Metagenome / Metatranscriptome Family F072646

Basic Information
Family ID	F072646
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	68 residues
Representative Sequence	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESETKRKNDRS
Number of Associated Samples	95
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	91.74 %
% of genes near scaffold ends (potentially truncated)	27.27 %
% of genes from short scaffolds (< 2000 bps)	84.30 %
Associated GOLD sequencing projects	89
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.72

Most Common Taxonomy
Group	Unclassified (53.719 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (24.793 % of family members)
Environment Ontology (ENVO)	Unclassified (38.017 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.587 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 56.99% β-sheet: 0.00% Coil/Unstructured: 43.01%
Feature Viewer

Powered by Feature Viewer

SCOP family	SCOP domain	Representative PDB	TM-score
a.7.4.1: Smac/diablo	d1g73a_	1g73	0.78357
a.25.1.0: automated matches	d4cyba_	4cyb	0.75683
a.25.1.0: automated matches	d5hjfa_	5hjf	0.74273
a.25.1.1: Ferritin	d1zuja1	1zuj	0.73901
a.25.1.1: Ferritin	d1jiga_	1jig	0.7343

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF00166	Cpn10	9.92
PF01458	SUFBD	6.61
PF01841	Transglut_core	5.79
PF00118	Cpn60_TCP1	4.96
PF06305	LapA_dom	4.96
PF00571	CBS	1.65
PF00106	adh_short	0.83
PF01594	AI-2E_transport	0.83
PF13565	HTH_32	0.83
PF00011	HSP20	0.83
PF01145	Band_7	0.83
PF00694	Aconitase_C	0.83
PF00534	Glycos_transf_1	0.83
PF14020	DUF4236	0.83
PF07040	DUF1326	0.83
PF12833	HTH_18	0.83
PF00440	TetR_N	0.83
PF09917	DUF2147	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	9.92
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	6.61
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	4.96
COG3771	Lipopolysaccharide assembly protein YciS/LapA, DUF1049 family	Cell wall/membrane/envelope biogenesis [M]	4.96
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.83
COG5588	Uncharacterized conserved protein, DUF1326 domain	Function unknown [S]	0.83

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
All Organisms	root	All Organisms	46.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
cellular organisms	root	All Organisms → cellular organisms	46.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.28 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	7.44 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	6.61 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
Spartobacteria	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria	4.13 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
Chthoniobacterales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales	4.13 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
Chthoniobacteraceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae	4.13 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
Chthoniobacter	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter	4.13 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.72 %
Chthoniobacter flavus	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4.13 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16911026	All Organisms → cellular organisms → Bacteria	1250	Open in IMG/M
3300001081\|JGI12662J13196_1014042	Not Available	659	Open in IMG/M
3300001108\|JGI12647J13326_104745	Not Available	548	Open in IMG/M
3300001164\|JGI11823J13286_1001486	All Organisms → cellular organisms → Bacteria	1520	Open in IMG/M
3300001867\|JGI12627J18819_10005524	All Organisms → cellular organisms → Bacteria	4820	Open in IMG/M
3300002245\|JGIcombinedJ26739_100286493	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	1532	Open in IMG/M
3300002245\|JGIcombinedJ26739_100510795	All Organisms → cellular organisms → Bacteria	1079	Open in IMG/M
3300002245\|JGIcombinedJ26739_101468723	Not Available	576	Open in IMG/M
3300002680\|Ga0005483J37271_117322	All Organisms → cellular organisms → Bacteria	773	Open in IMG/M
3300002681\|Ga0005471J37259_109984	Not Available	552	Open in IMG/M
3300002906\|JGI25614J43888_10013999	All Organisms → cellular organisms → Bacteria	2585	Open in IMG/M
3300002910\|JGI25615J43890_1062745	Not Available	629	Open in IMG/M
3300002917\|JGI25616J43925_10000151	All Organisms → cellular organisms → Bacteria	22015	Open in IMG/M
3300004118\|Ga0058886_1373296	Not Available	1267	Open in IMG/M
3300004135\|Ga0058884_1390559	All Organisms → cellular organisms → Bacteria	1936	Open in IMG/M
3300004631\|Ga0058899_10055333	Not Available	1204	Open in IMG/M
3300004631\|Ga0058899_10126108	All Organisms → cellular organisms → Bacteria	1037	Open in IMG/M
3300004631\|Ga0058899_11565021	Not Available	599	Open in IMG/M
3300005435\|Ga0070714_101547808	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005467\|Ga0070706_102169022	Not Available	502	Open in IMG/M
3300005549\|Ga0070704_101291111	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300005602\|Ga0070762_10222956	Not Available	1162	Open in IMG/M
3300006028\|Ga0070717_11143789	Not Available	709	Open in IMG/M
3300006173\|Ga0070716_101800997	All Organisms → cellular organisms → Bacteria	507	Open in IMG/M
3300006175\|Ga0070712_101083721	Not Available	695	Open in IMG/M
3300006176\|Ga0070765_100617382	Not Available	1022	Open in IMG/M
3300006797\|Ga0066659_10525975	Not Available	952	Open in IMG/M
3300006893\|Ga0073928_10001469	All Organisms → cellular organisms → Bacteria	45097	Open in IMG/M
3300006893\|Ga0073928_10003833	All Organisms → cellular organisms → Bacteria	23089	Open in IMG/M
3300007255\|Ga0099791_10251875	Not Available	838	Open in IMG/M
3300007788\|Ga0099795_10137830	Not Available	990	Open in IMG/M
3300009137\|Ga0066709_100642659	All Organisms → cellular organisms → Bacteria	1518	Open in IMG/M
3300010159\|Ga0099796_10121093	Not Available	1005	Open in IMG/M
3300011120\|Ga0150983_10944113	Not Available	1091	Open in IMG/M
3300011120\|Ga0150983_13658205	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300011120\|Ga0150983_14968305	Not Available	631	Open in IMG/M
3300011120\|Ga0150983_15637854	Not Available	511	Open in IMG/M
3300011120\|Ga0150983_15691745	All Organisms → cellular organisms → Bacteria → PVC group	918	Open in IMG/M
3300011120\|Ga0150983_16241009	Not Available	594	Open in IMG/M
3300011404\|Ga0153951_1096521	Not Available	550	Open in IMG/M
3300011411\|Ga0153933_1064566	Not Available	785	Open in IMG/M
3300012169\|Ga0153990_1057441	Not Available	883	Open in IMG/M
3300012202\|Ga0137363_10086355	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2350	Open in IMG/M
3300012203\|Ga0137399_10509944	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1009	Open in IMG/M
3300012203\|Ga0137399_10765911	Not Available	813	Open in IMG/M
3300012210\|Ga0137378_10053253	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	3645	Open in IMG/M
3300012361\|Ga0137360_10268144	All Organisms → cellular organisms → Bacteria	1408	Open in IMG/M
3300012362\|Ga0137361_10879455	Not Available	813	Open in IMG/M
3300012683\|Ga0137398_10444377	Not Available	886	Open in IMG/M
3300012923\|Ga0137359_11363079	Not Available	597	Open in IMG/M
3300012923\|Ga0137359_11726126	Not Available	513	Open in IMG/M
3300012925\|Ga0137419_10477492	Not Available	986	Open in IMG/M
3300012925\|Ga0137419_11513389	All Organisms → cellular organisms → Bacteria	569	Open in IMG/M
3300012927\|Ga0137416_10489002	All Organisms → cellular organisms → Bacteria	1058	Open in IMG/M
3300012930\|Ga0137407_10213264	All Organisms → cellular organisms → Bacteria	1737	Open in IMG/M
3300012944\|Ga0137410_10483254	All Organisms → cellular organisms → Bacteria	1010	Open in IMG/M
3300015264\|Ga0137403_10086352	All Organisms → cellular organisms → Bacteria	3163	Open in IMG/M
3300016445\|Ga0182038_11726185	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300020582\|Ga0210395_11196937	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300020583\|Ga0210401_10051868	All Organisms → cellular organisms → Bacteria	3871	Open in IMG/M
3300020583\|Ga0210401_10372955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1289	Open in IMG/M
3300021046\|Ga0215015_10611101	All Organisms → cellular organisms → Bacteria	1800	Open in IMG/M
3300021168\|Ga0210406_10033267	All Organisms → cellular organisms → Bacteria	4635	Open in IMG/M
3300021171\|Ga0210405_10126383	Not Available	2020	Open in IMG/M
3300021178\|Ga0210408_10243244	Not Available	1433	Open in IMG/M
3300021180\|Ga0210396_10129205	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2277	Open in IMG/M
3300021402\|Ga0210385_11265564	Not Available	566	Open in IMG/M
3300021474\|Ga0210390_10162309	Not Available	1885	Open in IMG/M
3300021475\|Ga0210392_10298080	Not Available	1155	Open in IMG/M
3300022557\|Ga0212123_10001470	All Organisms → cellular organisms → Bacteria	65280	Open in IMG/M
3300022557\|Ga0212123_10001887	All Organisms → cellular organisms → Bacteria	54523	Open in IMG/M
3300024288\|Ga0179589_10087696	Not Available	1250	Open in IMG/M
3300025929\|Ga0207664_11219903	All Organisms → cellular organisms → Bacteria	670	Open in IMG/M
3300025939\|Ga0207665_11314705	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300026285\|Ga0209438_1203492	Not Available	529	Open in IMG/M
3300026304\|Ga0209240_1000285	All Organisms → cellular organisms → Bacteria	21060	Open in IMG/M
3300026319\|Ga0209647_1001886	All Organisms → cellular organisms → Bacteria	17359	Open in IMG/M
3300026319\|Ga0209647_1020159	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	4144	Open in IMG/M
3300026319\|Ga0209647_1073214	All Organisms → cellular organisms → Bacteria	1725	Open in IMG/M
3300026359\|Ga0257163_1055428	Not Available	634	Open in IMG/M
3300026490\|Ga0257153_1077640	All Organisms → cellular organisms → Bacteria	668	Open in IMG/M
3300027502\|Ga0209622_1006861	All Organisms → cellular organisms → Bacteria	1857	Open in IMG/M
3300027548\|Ga0209523_1023214	Not Available	1220	Open in IMG/M
3300027616\|Ga0209106_1153784	Not Available	512	Open in IMG/M
3300027651\|Ga0209217_1185004	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300027667\|Ga0209009_1160843	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	571	Open in IMG/M
3300027681\|Ga0208991_1016337	All Organisms → cellular organisms → Bacteria	2232	Open in IMG/M
3300027684\|Ga0209626_1187285	Not Available	549	Open in IMG/M
3300027727\|Ga0209328_10020149	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Spartobacteria → Chthoniobacterales → Chthoniobacteraceae → Chthoniobacter → Chthoniobacter flavus	2036	Open in IMG/M
3300027727\|Ga0209328_10102485	Not Available	875	Open in IMG/M
3300027884\|Ga0209275_10720890	Not Available	574	Open in IMG/M
3300027889\|Ga0209380_10227068	Not Available	1096	Open in IMG/M
3300027908\|Ga0209006_11376719	Not Available	541	Open in IMG/M
3300029636\|Ga0222749_10554586	Not Available	626	Open in IMG/M
3300030803\|Ga0074037_1651181	All Organisms → cellular organisms → Bacteria	1127	Open in IMG/M
3300030849\|Ga0075393_10677287	All Organisms → cellular organisms → Bacteria	1038	Open in IMG/M
3300030852\|Ga0075389_11379851	Not Available	744	Open in IMG/M
3300030852\|Ga0075389_11459992	Not Available	535	Open in IMG/M
3300030853\|Ga0075372_11283336	Not Available	627	Open in IMG/M
3300030855\|Ga0075374_11357241	Not Available	590	Open in IMG/M
3300030923\|Ga0138296_1609314	Not Available	820	Open in IMG/M
3300030937\|Ga0138302_1373852	Not Available	548	Open in IMG/M
3300030962\|Ga0138297_1070743	Not Available	515	Open in IMG/M
3300030970\|Ga0075381_11330123	Not Available	736	Open in IMG/M
3300031057\|Ga0170834_100109294	Not Available	1182	Open in IMG/M
3300031057\|Ga0170834_102713602	Not Available	1351	Open in IMG/M
3300031122\|Ga0170822_10105245	Not Available	558	Open in IMG/M
3300031122\|Ga0170822_13632133	Not Available	774	Open in IMG/M
3300031128\|Ga0170823_12546701	Not Available	839	Open in IMG/M
3300031231\|Ga0170824_112332327	All Organisms → cellular organisms → Bacteria	1187	Open in IMG/M
3300031231\|Ga0170824_114023345	Not Available	858	Open in IMG/M
3300031231\|Ga0170824_127381132	Not Available	591	Open in IMG/M
3300031715\|Ga0307476_10472253	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300031715\|Ga0307476_11227638	All Organisms → cellular organisms → Bacteria	548	Open in IMG/M
3300031718\|Ga0307474_10605382	All Organisms → cellular organisms → Bacteria	863	Open in IMG/M
3300031754\|Ga0307475_10309609	Not Available	1268	Open in IMG/M
3300031754\|Ga0307475_10397632	Not Available	1107	Open in IMG/M
3300031754\|Ga0307475_10842576	All Organisms → cellular organisms → Bacteria	726	Open in IMG/M
3300031823\|Ga0307478_11613846	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300031962\|Ga0307479_11514171	Not Available	628	Open in IMG/M
3300032180\|Ga0307471_103700248	Not Available	541	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.52%
Host-Associated	Host-Associated	2.48%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.21%
Aquatic	Environmental → Aquatic	3.31%
Fungi	Host-Associated → Fungi	2.48%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.21%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.31%
Mycelium	Host-Associated → Fungi → Mycelium	2.48%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	59.50%
Loam	Environmental → Terrestrial → Soil → Loam	34.71%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.31%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	2.48%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	33.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	28.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	16.53%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	9.09%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.61%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.31%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	2.48%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	24.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.01%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	15.70%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	7.44%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	7.44%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	6.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.96%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.31%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.31%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.65%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001108	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3	Environmental	Open in IMG/M
3300001164	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M1	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300002680	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF132 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002681	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF120 (Metagenome Metatranscriptome, Counting Only)	Environmental	Open in IMG/M
3300002906	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002917	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_100cm	Environmental	Open in IMG/M
3300004118	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF208 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011404	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ035 MetaG	Host-Associated	Open in IMG/M
3300011411	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ017 MetaG	Host-Associated	Open in IMG/M
3300012169	Attine ant fungus gardens microbial communities from North Carolina, USA - TSNC074 MetaG	Host-Associated	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012210	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_60_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026359	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-A	Environmental	Open in IMG/M
3300026490	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A	Environmental	Open in IMG/M
3300027502	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027548	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027616	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM1_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027667	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030803	Metatranscriptome of forest soil microbial communities from Dalarna County, Sweden - Site 2 - Mineral C3 (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030849	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FB4 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030852	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB2 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030853	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030855	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA9 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300030923	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A3_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030937	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_spring Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030962	Forest soil microbial communities from Spain - ITS-tags Site 9-Mixed-thinned forest site A4_MS_autumn Metatranscriptome (Eukaryote Community Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300030970	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB1 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031122	Oak Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_02003510	2088090014	Soil	MIAKQRGEGAHLLDALWFRTSGDVANLKRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVMN
JGI12662J13196_10140421	3300001081	Forest Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGPKIVEHEISEMIEYLEESKTKETTGAREARLVIN*
JGI12647J13326_1047451	3300001108	Forest Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGPKIVEHEISEMIEYLEESKTKETTGXRXARLVIN*
JGI11823J13286_10014862	3300001164	Forest Soil	MIAKQRGEGAHLLDALWFRASGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGGSKARLEIN*
JGI12627J18819_100055242	3300001867	Forest Soil	MIAKQRGEGAHLLDALWLRSLGDVTSLRRLRFQCRNIGQMIAEHEISEMIEYLEESETKKPAAASKS*
JGIcombinedJ26739_1002864933	3300002245	Forest Soil	MIAKQRGEGAHLLDALWFRASCDVANLRRLHLHRRNIGHKIVEHEISEMIDYLEETKTKKRQLLGKPD*
JGIcombinedJ26739_1005107952	3300002245	Forest Soil	MIAKQRGEGAHLLDALWFRTSGNVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGTRKARLVIN*
JGIcombinedJ26739_1014687232	3300002245	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRKLRFQCRNIGQMIAEHEIAEMIEYLEERARQKEKAPGVSKS*
Ga0005483J37271_1173222	3300002680	Forest Soil	MIAKQRGEGAHLLDALWLRALGDVTGLRTLRFRCRDIGQMIAEHEISEMIEYLEESKTTR
Ga0005471J37259_1099841	3300002681	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRFQCQNVGQMIAEHEISEMIEYLEESETKRKTRRASKLDR*
JGI25614J43888_100139994	3300002906	Grasslands Soil	MIAKQRGEGAHLLDALWFRMSGDVANLRTLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVIKLSRVSGXRGTKWKSTVK*
JGI25615J43890_10627451	3300002910	Grasslands Soil	MIAKQRGEGAHLLDALWFRTSGDVAKLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVMN*
JGI25616J43925_1000015116	3300002917	Grasslands Soil	MIAKQRGEGAHLLDAFWLRTLGDVTSLRRLGFQCQNIGQKIAEHEISEMIEYLEESETKRKKRQEIES*
Ga0058886_13732962	3300004118	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFECRNIGQKIAEHEISEMIEYLEESEKKRKKRQQLES*
Ga0058884_13905592	3300004135	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESEKKRAKRQQVES*
Ga0058899_100553331	3300004631	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDLPNLRRLGFQCRNIGQKIAEHEISEMIEYLEETKTKRKNDRSWEASVLSGK*
Ga0058899_101261081	3300004631	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESKTKREKRQELEG*
Ga0058899_115650211	3300004631	Forest Soil	MITKQRGEGAHLLDAFWLRTLGDVTSLRTLRYQCRNSGQMIAEHEISEMIESLETETKRKSDRSLVS*
Ga0070714_1015478082	3300005435	Agricultural Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRFQCQNVGQMIAEHEISEMIEYLEES
Ga0070706_1021690221	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MIAKQRGEGAHLLDALWFRTSGDVANLKRLHLHCRNIGHKIVEHEISEMIEYLEESKTK*
Ga0070704_1012911112	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MIAKQRGEGAHLLDALWFRTSADVTSLRRLHLHCRNLGHKIVEHEISEMIEYLEESKTKETTGARKARPKIN*
Ga0070762_102229562	3300005602	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNVGQKIAEHEISEMIEYLERERDKKKKTTGAGRLDG*
Ga0070717_111437892	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVIN*
Ga0070716_1018009971	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRDIGHKIVEHEISEMIEYLEESKTKEMTGARKPD*
Ga0070712_1010837212	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRFQCQNVGQMIAEHEISEMIEYLEASETKRKTRRASKLDR*
Ga0070765_1006173822	3300006176	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLERERDKK
Ga0066659_105259752	3300006797	Soil	MIAKQRGEGAHLGAHLLDAFWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVMN*
Ga0073928_1000146932	3300006893	Iron-Sulfur Acid Spring	MIAKQRGEGAHLLDALWLRTLGDVTSLRSLGFQCRNIGQKIAEHEISEMIEYLEESETKRKSDRNWRPRPVIN*
Ga0073928_1000383313	3300006893	Iron-Sulfur Acid Spring	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRYQCRNIGQMIAEHEISEMIEYLEESKTKRKNGRSLGS*
Ga0099791_102518752	3300007255	Vadose Zone Soil	MIMIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVMN*
Ga0099795_101378302	3300007788	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGGSES*
Ga0066709_1006426593	3300009137	Grasslands Soil	MISEQRGEGAHLLDALWFRTSGDVANLKRLHLHCRNIGQKIVEHEISEMIEYLEETKTKETTGARKARLVHQV*
Ga0099796_101210931	3300010159	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLSRLHLHCRNIGQRIVEHEISEMIEYLEETKTKETTGA
Ga0150983_109441132	3300011120	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEES
Ga0150983_136582051	3300011120	Forest Soil	MIAKQRGEGAHLLDALWLRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTK*
Ga0150983_149683051	3300011120	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTGLRRLGFQCRNIGQKIAEHEISEMIEYLEESKTKRQKRQELES*
Ga0150983_156378541	3300011120	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLERERDKKKRTTGAGSLDG*
Ga0150983_156917452	3300011120	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTTLRRLGFQCRDIGQKIAEQEISQMIEYLEESKTKRQKRQEPES*
Ga0150983_162410091	3300011120	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESEKKNDRGWKARPVIN*
Ga0153951_10965212	3300011404	Attine Ant Fungus Gardens	MIAKQRGEGAHLLDALWLRSLGDVTGLRRLRFQCRNTGQMIAEHEISEMIEYLEESETKKPAAASKC*
Ga0153933_10645662	3300011411	Attine Ant Fungus Gardens	MITKQRGEGAHLLDALWLRALGDVAGLRRLRLRCRDIGQMIAEHEIAEMIEYLEESKIKRKNDRSLDS*
Ga0153990_10574412	3300012169	Attine Ant Fungus Gardens	MIAKQRGEGAHLLDALWFRMSGDVANLRRLHLHSRDIGHKIVEHEISEMIEYLEESKTKEMTGARKPD*
Ga0137363_100863553	3300012202	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGQKIVEHEISEMIEYLEETKTKETTGARKARLVMN*
Ga0137399_105099441	3300012203	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLSRLHLHCRNIGQKIVEHEISEMIEYLEETKTKETTGARKTRLVIN*
Ga0137399_107659111	3300012203	Vadose Zone Soil	MIMIAKQRGEGAHLLDALWFRASGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVIS*
Ga0137378_100532531	3300012210	Vadose Zone Soil	LLGYERAKNDMIAKQRGEGAHLLDALWFRTSGDVANLKRLHLHCRNIGQKIVEHEISEMIEYLEETKTKETTGARKARLVMN*
Ga0137360_102681442	3300012361	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLKRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVMN*
Ga0137361_108794551	3300012362	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEETKTKETTGARKTRLVP*
Ga0137398_104443772	3300012683	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGAQKARLVMN*
Ga0137359_113630791	3300012923	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVMN*
Ga0137359_117261261	3300012923	Vadose Zone Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESETKRKNDRS*
Ga0137419_104774921	3300012925	Vadose Zone Soil	MIMIAKQRGEGAHLLDALWFRASGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEETKTKETTGARKARLVIN*
Ga0137419_115133891	3300012925	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVASLRRLHLHCRNIGHKIVEHEVSEMIEYLEESKTKETTGGSKARLEIN*
Ga0137416_104890022	3300012927	Vadose Zone Soil	MIMIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGGSKARLEIN*
Ga0137407_102132642	3300012930	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLKRLYLHCRNIGQKIVEHEISEMIEYLEETKTKETTGARKARLVMN*
Ga0137410_104832542	3300012944	Vadose Zone Soil	MIAKQKGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGQKIVEHEISEMIEYLEESKTKETTGARKARLVIN*
Ga0137403_100863523	3300015264	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVANLKRLHLHCRNIGQKIVEHEISEMIEYLEETKTKETTGARKARLVMN*
Ga0182038_117261851	3300016445	Soil	MIMKQRGEGAHLLDALWLRMSGDVANLRRLQLHCRSIGQKIVEHEISDMIEYLEESPGKRDAICSKTGLVKE
Ga0210395_111969371	3300020582	Soil	SIGARSDMIAKQRGEGAHLLDALWLRALGDVTGLRTLRFRCRDIGQMIAEHEISEMIEYLEESKTTR
Ga0210401_100518683	3300020583	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRFQCQNVGQMIAEHEISEMIEYLEESETKRKTRRASKLDR
Ga0210401_103729552	3300020583	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLERERDKKKRTTGAGSLDG
Ga0215015_106111012	3300021046	Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVIN
Ga0210406_100332671	3300021168	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESEKKNDRG
Ga0210405_101263832	3300021171	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRFQCQNVGQMIAEHEISEMIEYLEASETKR
Ga0210408_102432442	3300021178	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESEKKNDRGWKARPVIN
Ga0210396_101292051	3300021180	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRFQCQNVGQMIAEHEISEMIEYLEASETKRKTRRASKLDR
Ga0210385_112655641	3300021402	Soil	MIAKQRGEGAHLLDALWLRALGDVTGLRTLRFRCRDIGQMIAEHEISEMIEYLERERDKKKRTTGAGSLDG
Ga0210390_101623091	3300021474	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRFQCQNVGQMIAEHEISEMIE
Ga0210392_102980802	3300021475	Soil	MIAKQRGEGAHLLDALWLRALGDVTGLRTLRFRCRDIGQMIAEHEISEMIEYLEESETKRKTRRASKLDR
Ga0212123_1000147024	3300022557	Iron-Sulfur Acid Spring	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRYQCRNIGQMIAEHEISEMIEYLEESKTKRKNGRSLGS
Ga0212123_1000188721	3300022557	Iron-Sulfur Acid Spring	MIAKQRGEGAHLLDALWLRTLGDVTSLRSLGFQCRNIGQKIAEHEISEMIEYLEESETKRKSDRNWRPRPVIN
Ga0179589_100876961	3300024288	Vadose Zone Soil	MIAKQRGEGAHLLDALWFRTSGDVAKLRRLHLHCRNIGHKIVEHEISEMIEYLEQSKTKETTGARKPRLVIN
Ga0207664_112199032	3300025929	Agricultural Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLRFQCQNVGQMIAEHEISEMIEYLEESETKRKTR
Ga0207665_113147051	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRDIGHKIVEHEISEMIEYLEESKTKEMTGARKPD
Ga0209438_12034921	3300026285	Grasslands Soil	MIAKQRGEGAHLLDALWFRTSGDVAKLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVMN
Ga0209240_100028521	3300026304	Grasslands Soil	MIAKQRGEGAHLLDAFWLRTLGDVTSLRRLGFQCQNIGQKIAEHEISEMIEYLEESETKRKKRQEMES
Ga0209647_100188614	3300026319	Grasslands Soil	MIAKQRGEGAHLLDAFWLRTLGDVTSLRRLGFQCQNIGQKIAEHEISEMIEYLEESETKRKKRQEIES
Ga0209647_10201593	3300026319	Grasslands Soil	MIAKQRGEGAHLLDALWFRMSGDVANLRTLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVIKLSRVSGERGTKWKSTVK
Ga0209647_10732143	3300026319	Grasslands Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESETKRKNDRS
Ga0257163_10554281	3300026359	Soil	MIMIAKQRGEGAHLLDALWFRTSGDVANIGPKIVEHEISEMIEYLEESKTKETTGAREARLVIN
Ga0257153_10776402	3300026490	Soil	MIAKQRGEGAHLLDALWFRTSGDVAKLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGARKARLVIN
Ga0209622_10068612	3300027502	Forest Soil	MIAKQRGEGAHLLDALWLRSLGDVTSLRRLRFQCRNTGQMIAEHEISEMIEYLEESETKKPTAASKS
Ga0209523_10232142	3300027548	Forest Soil	MIAKQRGEGAHLLDALWLRSLGDVTSLRRLRFQCRNIGQMIAEHEISEMIEYLEESETKRKTRRASKLDR
Ga0209106_11537841	3300027616	Forest Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGA
Ga0209217_11850042	3300027651	Forest Soil	MIAKQRGEGAHLLDALWFRASCDVANLRRLHLHRRNIGHKIVEHEISEMIDYLEETKTKKRQLLGKPD
Ga0209009_11608431	3300027667	Forest Soil	VQRSIGARSDMIAKQRGEAAHLLDALWLRTLGDVTSLRTLRFQCRNVGQMIAEHEISEMIEYLEETKTNETKGARKARLVH
Ga0208991_10163372	3300027681	Forest Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGGSKARLEIN
Ga0209626_11872851	3300027684	Forest Soil	MIAKQRGEGAHLLDALWFRTSGDVANLRRLHLHCRNIGPKIVEHEISEMIEYLEE
Ga0209328_100201491	3300027727	Forest Soil	KQRGEGAHLLDALWFRASCDVANLRRLHLHRRNIGHKIVEHEISEMIDYLEETKTKKRQLLGKPD
Ga0209328_101024851	3300027727	Forest Soil	MIAKQRGEGAHLLDALWFRTSGNVANLRRLHLHCRNIGHKIVEHEISEMIEYLEESKTKETTGTRKARLVIN
Ga0209275_107208902	3300027884	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNVGQKIAEHEISEMIEYLERERDKKKKTTGAGRLDG
Ga0209380_102270681	3300027889	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEETKTKRKNDRSWEASVLSGK
Ga0209006_113767192	3300027908	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRKLRFQCRNIGQMIAEHEIAEMIEYLEERARQKEK
Ga0222749_105545861	3300029636	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESEKKRAKRQQVES
Ga0074037_16511813	3300030803	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESETKRKKRQEL
Ga0075393_106772873	3300030849	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRSIGQKIAEHEISEMIEYLEESEKKK
Ga0075389_113798512	3300030852	Soil	MIARQRGEGAHLLDALWLRTLGDVTSLRRLGFRCRNIGQKIAEHEISEMIEYLE
Ga0075389_114599921	3300030852	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRSIGQKIAEHEISEMIEYLEESETKRKKRQGR
Ga0075372_112833362	3300030853	Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRSLRFQCRNIGQKIAEHEISEMIEYLEE
Ga0075374_113572411	3300030855	Soil	MIARQRGEGAHLLDALWLRTLGDVTSLRRLGFRCRNIGQKIAEHEISEMIE
Ga0138296_16093142	3300030923	Soil	MIARQRGEGAHLLDALWLRTLGDVTSLRRLGFRCRNIGQKIAEHEISEMIEYLEESDTKRKNDRSSKARAVI
Ga0138302_13738521	3300030937	Soil	MIARQRGEGAHLLDALWLRTLGDVTSLRRLGFRCRNIGQKIAEHEISEMIEYLEQ
Ga0138297_10707431	3300030962	Soil	MIAQQRGEGAHLLDALWLRTLGDVTSLKRLRFQCGNIGQMIAEHEISEMIEYLEETETKSKNEQSLES
Ga0075381_113301231	3300030970	Soil	MIARQRGEGAHLLDALWLRTLGDVTSLRRLGFRCRNIGQKIAEHEISEMIEYLEQS
Ga0170834_1001092941	3300031057	Forest Soil	MIARQRGEGAHLLDALWLRTLGDVTSLRRLGFRCRNIGQKIAEHEISEMIEYLEQSETKRKKRARNLPRSGWRRA
Ga0170834_1027136022	3300031057	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFKCRNIGQKIAEHEISEMIEYLEESETKRKKTTGAGRLDG
Ga0170822_101052451	3300031122	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVSSLRRLGFQCRNIGQKIAEHEISEMIEYLEESETKRKKRQGR
Ga0170822_136321332	3300031122	Forest Soil	MIARQRGEGAHLLDALWLRTLGDVTSLRRLGFRCRNIGQKIAEHEISEMIEYLEQSE
Ga0170823_125467011	3300031128	Forest Soil	MIARQRGEGAHLLDALWLRTLGDVTSLRRLGFRCRNIGQKIAEHEISEMIEYLEQSETKRKKRARNLPRSGW
Ga0170824_1123323273	3300031231	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRSLRFQCRNIGQKIAEHEISEMIEYLEESEKKRKKTTAAR
Ga0170824_1140233451	3300031231	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRSIGQKIAEHEISEMIEYLEESEKK
Ga0170824_1273811321	3300031231	Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFKCRNIGQKIAEHEISEMI
Ga0307476_104722532	3300031715	Hardwood Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLDENEKKKEKTTAARKLDR
Ga0307476_112276382	3300031715	Hardwood Forest Soil	SDMIAKQRGEGAHLLDALWLRSLGDVTSLRRLRFQCRNIGQMIAEHEISEMIEYLEESETKKPAAASKS
Ga0307474_106053822	3300031718	Hardwood Forest Soil	GARSDMIAKQRGEGAHLLDALWLRSLGDVTSLRRLRFQCRNIGQMIAEHEISEMIEYLEERETKKPAAASKS
Ga0307475_103096091	3300031754	Hardwood Forest Soil	MIANQRGEGAHLLDALWLCALGDVTNLRRLRLQCRKIGQKIAEHEISEMIEYLEASKTKR
Ga0307475_103976321	3300031754	Hardwood Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRSIGQKIAEHEISEMIEYLEESKTKR
Ga0307475_108425762	3300031754	Hardwood Forest Soil	MIAKQRGEGAHLLDALWLRSLGDVTSLRRLRFQCRNIGQMIAEHEISEMIEYLEERETKKPAAASRS
Ga0307478_116138461	3300031823	Hardwood Forest Soil	MIAKQRGEGAHLLDALWLRSLGDVTSLRRLRFQCRNIGQMIAEHEISEMIEYLEERETKKPAAASKS
Ga0307479_115141711	3300031962	Hardwood Forest Soil	MIAKQRGEGAHLLDALWLRTLGDVTSLRRLGFQCRNIGQKIAEHEISEMIEYLEESDTKRKNDRS
Ga0307471_1037002482	3300032180	Hardwood Forest Soil	MIAKQRGEGAHLLDALWLRALGDVTGLRTLRFRCRDIGQMIAEHEISEMIEYLEESK

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.72
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.72
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072646

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign