Metagenome / Metatranscriptome Family F072709

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072709
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	59 residues
Representative Sequence	KDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQSVFDRFFGAQRR
Number of Associated Samples	83
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	16.53 %
% of genes near scaffold ends (potentially truncated)	80.99 %
% of genes from short scaffolds (< 2000 bps)	95.87 %
Associated GOLD sequencing projects	79
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (62.810 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (28.099 % of family members)
Environment Ontology (ENVO)	Unclassified (40.496 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (56.198 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF04226	Transgly_assoc	19.83
PF04228	Zn_peptidase	16.53
PF04011	LemA	9.09
PF01758	SBF	4.13
PF16868	NMT1_3	4.13
PF04536	TPM_phosphatase	4.13
PF06078	DUF937	4.13
PF01593	Amino_oxidase	3.31
PF13548	DUF4126	1.65
PF04317	DUF463	1.65
PF13505	OMP_b-brl	0.83
PF08734	GYD	0.83
PF02515	CoA_transf_3	0.83
PF12840	HTH_20	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	19.83
COG2321	Predicted metalloprotease	General function prediction only [R]	16.53
COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	Cell wall/membrane/envelope biogenesis [M]	9.09
COG3753	Uncharacterized conserved protein YidB, DUF937 family	Function unknown [S]	4.13
COG3106	Ras-like GTP-binding stress-induced protein YcjX, DUF463 family	Signal transduction mechanisms [T]	1.65
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.83
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	62.81 %
Unclassified	root	N/A	37.19 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	62.81 %
Unclassified	root	N/A	37.19 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	62.81 %
Unclassified	root	N/A	37.19 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	52.89 %
Unclassified	root	N/A	37.19 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.19 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	33.06 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.65 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.19 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	22.31 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	0.83 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	0.83 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.19 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.61 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	5.79 %
Blastochloridaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae	1.65 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %
Chitinophagia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.19 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	5.79 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.31 %
Blastochloris	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	1.65 %
Chitinophagales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales	0.83 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.83 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.19 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.79 %
Blastochloris	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	1.65 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.83 %
Chitinophagaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae	0.83 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.83 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.19 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.79 %
Blastochloris	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	1.65 %
unclassified Chitinophagaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae	0.83 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.83 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.83 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	37.19 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	5.79 %
Blastochloris	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	1.65 %
Chitinophagaceae bacterium	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	0.83 %
Bradyrhizobium sp. Tv2a-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	0.83 %
Afipia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	0.83 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.83 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100242096	Not Available	558	Open in IMG/M
3300000789\|JGI1027J11758_12864650	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	566	Open in IMG/M
3300004079\|Ga0055514_10214664	Not Available	554	Open in IMG/M
3300005147\|Ga0066821_1001173	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1244	Open in IMG/M
3300005163\|Ga0066823_10044039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	786	Open in IMG/M
3300005217\|Ga0069005_10089787	All Organisms → cellular organisms → Bacteria → Proteobacteria	746	Open in IMG/M
3300005332\|Ga0066388_101134051	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1328	Open in IMG/M
3300005332\|Ga0066388_106431477	All Organisms → cellular organisms → Bacteria → Proteobacteria	592	Open in IMG/M
3300005468\|Ga0070707_101551942	All Organisms → cellular organisms → Bacteria → Proteobacteria	629	Open in IMG/M
3300005713\|Ga0066905_101579296	All Organisms → cellular organisms → Bacteria → Proteobacteria	600	Open in IMG/M
3300005764\|Ga0066903_107630399	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	557	Open in IMG/M
3300005764\|Ga0066903_108591412	Not Available	520	Open in IMG/M
3300006041\|Ga0075023_100316292	Not Available	648	Open in IMG/M
3300006172\|Ga0075018_10471409	Not Available	650	Open in IMG/M
3300006172\|Ga0075018_10702589	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300006172\|Ga0075018_10730020	All Organisms → cellular organisms → Bacteria → Proteobacteria	538	Open in IMG/M
3300006847\|Ga0075431_101510315	All Organisms → cellular organisms → Bacteria → Proteobacteria	630	Open in IMG/M
3300009147\|Ga0114129_11305282	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	899	Open in IMG/M
3300009147\|Ga0114129_12146472	All Organisms → cellular organisms → Bacteria → Proteobacteria	673	Open in IMG/M
3300009700\|Ga0116217_10555471	Not Available	718	Open in IMG/M
3300009792\|Ga0126374_10149915	Not Available	1411	Open in IMG/M
3300009824\|Ga0116219_10374037	Not Available	797	Open in IMG/M
3300010043\|Ga0126380_10577138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	880	Open in IMG/M
3300010046\|Ga0126384_10012296	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5366	Open in IMG/M
3300010046\|Ga0126384_10545166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
3300010046\|Ga0126384_12149220	Not Available	536	Open in IMG/M
3300010047\|Ga0126382_11615193	Not Available	602	Open in IMG/M
3300010047\|Ga0126382_11682036	Not Available	592	Open in IMG/M
3300010047\|Ga0126382_11721070	Not Available	586	Open in IMG/M
3300010047\|Ga0126382_12067653	All Organisms → cellular organisms → Bacteria → Proteobacteria	544	Open in IMG/M
3300010048\|Ga0126373_11606482	Not Available	715	Open in IMG/M
3300010358\|Ga0126370_12596570	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	506	Open in IMG/M
3300010359\|Ga0126376_10008443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6306	Open in IMG/M
3300010359\|Ga0126376_10273064	All Organisms → cellular organisms → Bacteria → Proteobacteria	1453	Open in IMG/M
3300010359\|Ga0126376_10994892	All Organisms → cellular organisms → Bacteria → Proteobacteria	838	Open in IMG/M
3300010359\|Ga0126376_12867227	All Organisms → cellular organisms → Bacteria → Proteobacteria	532	Open in IMG/M
3300010360\|Ga0126372_11371180	Not Available	738	Open in IMG/M
3300010362\|Ga0126377_10700913	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Afipia	1065	Open in IMG/M
3300010362\|Ga0126377_10997821	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	903	Open in IMG/M
3300010362\|Ga0126377_11716329	Not Available	703	Open in IMG/M
3300010366\|Ga0126379_11231392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	855	Open in IMG/M
3300010366\|Ga0126379_12360680	Not Available	632	Open in IMG/M
3300010366\|Ga0126379_13210257	Not Available	547	Open in IMG/M
3300010376\|Ga0126381_100824855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1332	Open in IMG/M
3300010376\|Ga0126381_101110165	Not Available	1142	Open in IMG/M
3300010376\|Ga0126381_103407905	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	626	Open in IMG/M
3300010376\|Ga0126381_104065721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	569	Open in IMG/M
3300010398\|Ga0126383_10620591	Not Available	1154	Open in IMG/M
3300011084\|Ga0138562_1049741	Not Available	740	Open in IMG/M
3300011089\|Ga0138573_1293327	Not Available	559	Open in IMG/M
3300012363\|Ga0137390_11504543	Not Available	614	Open in IMG/M
3300012951\|Ga0164300_10579761	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300012960\|Ga0164301_11817085	Not Available	513	Open in IMG/M
3300012971\|Ga0126369_11884720	All Organisms → cellular organisms → Bacteria → Proteobacteria	686	Open in IMG/M
3300012984\|Ga0164309_11271576	Not Available	621	Open in IMG/M
3300012987\|Ga0164307_11210130	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Blastochloridaceae → Blastochloris	626	Open in IMG/M
3300014320\|Ga0075342_1149857	Not Available	636	Open in IMG/M
3300015372\|Ga0132256_101038527	All Organisms → cellular organisms → Bacteria → Proteobacteria	935	Open in IMG/M
3300015374\|Ga0132255_104601875	All Organisms → cellular organisms → Bacteria → Proteobacteria	584	Open in IMG/M
3300016270\|Ga0182036_11775929	All Organisms → cellular organisms → Bacteria → Proteobacteria	522	Open in IMG/M
3300016294\|Ga0182041_10262221	Not Available	1413	Open in IMG/M
3300016294\|Ga0182041_10752221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	868	Open in IMG/M
3300016319\|Ga0182033_10127162	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1929	Open in IMG/M
3300016422\|Ga0182039_10071764	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2452	Open in IMG/M
3300016422\|Ga0182039_10818951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	827	Open in IMG/M
3300021560\|Ga0126371_10992039	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	982	Open in IMG/M
3300021560\|Ga0126371_13605267	All Organisms → cellular organisms → Bacteria	522	Open in IMG/M
3300026507\|Ga0257165_1076878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	613	Open in IMG/M
3300026824\|Ga0207723_118071	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300027003\|Ga0207722_1024460	All Organisms → cellular organisms → Bacteria	660	Open in IMG/M
3300027011\|Ga0207740_1034122	All Organisms → cellular organisms → Bacteria	612	Open in IMG/M
3300027045\|Ga0207726_1024933	All Organisms → cellular organisms → Bacteria	888	Open in IMG/M
3300031544\|Ga0318534_10793666	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300031545\|Ga0318541_10295619	Not Available	902	Open in IMG/M
3300031545\|Ga0318541_10328417	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Chitinophagia → Chitinophagales → Chitinophagaceae → unclassified Chitinophagaceae → Chitinophagaceae bacterium	854	Open in IMG/M
3300031545\|Ga0318541_10732518	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300031546\|Ga0318538_10113936	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1407	Open in IMG/M
3300031561\|Ga0318528_10145320	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1261	Open in IMG/M
3300031573\|Ga0310915_10041373	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2936	Open in IMG/M
3300031573\|Ga0310915_10232151	Not Available	1296	Open in IMG/M
3300031573\|Ga0310915_10691627	Not Available	720	Open in IMG/M
3300031679\|Ga0318561_10819383	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300031713\|Ga0318496_10231488	All Organisms → cellular organisms → Bacteria	1018	Open in IMG/M
3300031719\|Ga0306917_10268603	Not Available	1311	Open in IMG/M
3300031736\|Ga0318501_10119252	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1334	Open in IMG/M
3300031768\|Ga0318509_10221638	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1054	Open in IMG/M
3300031771\|Ga0318546_10236721	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1254	Open in IMG/M
3300031781\|Ga0318547_10141104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1411	Open in IMG/M
3300031796\|Ga0318576_10244685	All Organisms → cellular organisms → Bacteria	846	Open in IMG/M
3300031805\|Ga0318497_10103631	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1529	Open in IMG/M
3300031833\|Ga0310917_10188047	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1377	Open in IMG/M
3300031833\|Ga0310917_10268092	All Organisms → cellular organisms → Bacteria → Proteobacteria	1151	Open in IMG/M
3300031879\|Ga0306919_10147060	Not Available	1715	Open in IMG/M
3300031879\|Ga0306919_11494685	All Organisms → cellular organisms → Bacteria → Proteobacteria	509	Open in IMG/M
3300031879\|Ga0306919_11519228	Not Available	504	Open in IMG/M
3300031896\|Ga0318551_10195991	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300031910\|Ga0306923_10832718	Not Available	1016	Open in IMG/M
3300031912\|Ga0306921_11884031	Not Available	640	Open in IMG/M
3300031941\|Ga0310912_10307325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1228	Open in IMG/M
3300031945\|Ga0310913_10074064	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2262	Open in IMG/M
3300031945\|Ga0310913_11259907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	514	Open in IMG/M
3300031946\|Ga0310910_10517376	Not Available	947	Open in IMG/M
3300031946\|Ga0310910_11409725	Not Available	536	Open in IMG/M
3300031947\|Ga0310909_10213706	Not Available	1606	Open in IMG/M
3300031947\|Ga0310909_10474388	Not Available	1050	Open in IMG/M
3300031947\|Ga0310909_11434288	Not Available	552	Open in IMG/M
3300031947\|Ga0310909_11583656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	520	Open in IMG/M
3300031954\|Ga0306926_10356306	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1808	Open in IMG/M
3300031954\|Ga0306926_12951264	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	509	Open in IMG/M
3300032044\|Ga0318558_10680418	Not Available	514	Open in IMG/M
3300032054\|Ga0318570_10456838	Not Available	583	Open in IMG/M
3300032059\|Ga0318533_10142337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Tv2a-2	1692	Open in IMG/M
3300032076\|Ga0306924_11412035	All Organisms → cellular organisms → Bacteria → Proteobacteria	742	Open in IMG/M
3300032090\|Ga0318518_10051289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1963	Open in IMG/M
3300032180\|Ga0307471_100862494	Not Available	1073	Open in IMG/M
3300032180\|Ga0307471_103635833	Not Available	546	Open in IMG/M
3300032180\|Ga0307471_103648492	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	545	Open in IMG/M
3300032261\|Ga0306920_103359488	All Organisms → cellular organisms → Bacteria → Proteobacteria	595	Open in IMG/M
3300033433\|Ga0326726_11808837	Not Available	595	Open in IMG/M
3300034090\|Ga0326723_0303600	Not Available	717	Open in IMG/M
3300034149\|Ga0364929_0101305	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.87%
Host-Associated	Host-Associated	4.13%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.74%
Aquatic	Environmental → Aquatic	4.13%
Plants	Host-Associated → Plants	4.13%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.26%
Sediment	Environmental → Aquatic → Sediment	3.31%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.31%
Peat	Environmental → Terrestrial → Peat	1.65%
Marine	Environmental → Aquatic → Marine	0.83%
Floodplain	Environmental → Terrestrial → Floodplain	0.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.34%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.48%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.65%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	43.80%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.88%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.44%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.48%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.65%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.65%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.65%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.10%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	24.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.22%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.44%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	3.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	3.31%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.31%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.48%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.65%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.65%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.65%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	1.65%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004079	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_TuleC_D2	Environmental	Open in IMG/M
3300005147	Soil and rhizosphere microbial communities from Laval, Canada - mgLMC	Environmental	Open in IMG/M
3300005163	Soil and rhizosphere microbial communities from Laval, Canada - mgHMB	Environmental	Open in IMG/M
3300005217	Wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - WestPond_CattailC_D2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009700	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011084	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 47 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300011089	Peat soil microbial communities from Weissenstadt, Germany - Metatranscriptome 58 (Metagenome Metatranscriptome) (version 2)	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300014320	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026507	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-12-B	Environmental	Open in IMG/M
3300026824	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 27 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027011	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 29 (SPAdes)	Environmental	Open in IMG/M
3300027045	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 40 (SPAdes)	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033433	Lab enriched peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF15MN	Environmental	Open in IMG/M
3300034090	Peat soil microbial communities from Michigan Hollow, Ithaca, NY, United States - MHF00N	Environmental	Open in IMG/M
3300034149	Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1002420961	3300000364	Soil	GRQGQSPELKDLSDLTKKLGVMGGAGTAVFGDHFEVGQDVDKRHVDNIQNVFDRFFGTQRR*
JGI1027J11758_128646502	3300000789	Soil	IFGGGVSGGPAQMPQGRQRQSPGMKDLSDLSKQLGSKGGAGAAVFGDHFEVGRDVDKSHADNIQSVFDQFFSAQRR*
Ga0055514_102146642	3300004079	Natural And Restored Wetlands	APQRAPQRGPSPELKDLSDLSKQLGVMGGVGSAVFGDQFEVGRDVRREHLDSIQSVFDRFFGTRR*
Ga0066821_10011731	3300005147	Soil	SKQLGVMGGAGAAVFGDHFETGRDVEKGHVDNIESVFDRFFGAQRRE*
Ga0066823_100440391	3300005163	Soil	KDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKGHVDNIESMFDRFFGAQRRE*
Ga0069005_100897871	3300005217	Natural And Restored Wetlands	GGPGRAPQRAPQRGPSPELKDLSDLSKQLGVMGGVGSAVFGDQFEVGRDVRQEHLDSIQSVFDRFFGTRR*
Ga0066388_1011340511	3300005332	Tropical Forest Soil	TKKLGVMGGAGAAVFGDHFEVGRDVDKSHAANIKSVFDRFMGAQRR*
Ga0066388_1064314772	3300005332	Tropical Forest Soil	RQLGVMGGAGAAVFGDRFEVGRKVEQGHLDNIQSVFANFLGAQRR*
Ga0070707_1015519422	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	GPAQMPQGRQGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFEAGRDVEKEHIDNIQSVFDRFFGAQRRE*
Ga0066905_1015792961	3300005713	Tropical Forest Soil	KDLSDLSKQLGVMGGAGAAVFGDHFEAGQDVEQKHIDNIQNVFDRFFGAQGR*
Ga0066903_1076303991	3300005764	Tropical Forest Soil	QGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHLDNIQSVFDRFFGAQRRE
Ga0066903_1085914121	3300005764	Tropical Forest Soil	GGPAGAPQPRVPSPELKDLSNMTKQLGVVDDVGAAVFGDRLEVGRDVEQRHLESIQDVFDRFFGPQRR*
Ga0075023_1003162922	3300006041	Watersheds	MKDLSDRTKQLGVMGGAGATVFGDNFEVGRDVDKSHVDNIQSVFDR
Ga0075018_104714091	3300006172	Watersheds	LSKQLGVMGGAGAAVFGDHFEAGRDVEKEHIDNIQSVFDRFFGAQRRE*
Ga0075018_107025891	3300006172	Watersheds	QMPQGRQGQSPQMKDLSDRSKQLGVMGSAGAAVFGDHFEPGHDVDQSHIDNIQNVFDRFFGAQQR*
Ga0075018_107300201	3300006172	Watersheds	GRQGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKGHVDNIESVFDRFFGAQRRE*
Ga0075431_1015103152	3300006847	Populus Rhizosphere	IKDLSDLSKQLGVMGGAGAAVFGDHFESGRDVEKEHIDNIESVFDRFFGAQRRE*
Ga0114129_113052821	3300009147	Populus Rhizosphere	PQGRQGQSPHIKDLSDLSKQLGVMGGAGAAVFGDHFESGREVEKEHVDNIQNVFDRFFGAHRRE*
Ga0114129_121464722	3300009147	Populus Rhizosphere	LSDLSKQLGVMGGAGAAVFGDHFESGRDVEKEHIDNIESVFDRFFGAQRRE*
Ga0116217_105554712	3300009700	Peatlands Soil	MKDLSELTKQLGVMGGAGAAVFGDRLEHGQNVDQSHLDNIQGILDRFYGADR
Ga0126374_101499151	3300009792	Tropical Forest Soil	MKDLSDLSKQLGVMDDGVGAAVFGDRFEVGRDVEQRHLDSIESVFDRFSGTPRR*
Ga0116219_103740371	3300009824	Peatlands Soil	QAPNPPMKDLSELTKQLGVMGGAGAAVFGDRLEHGQNVDQSHLDNIQGILDRFYGADRR*
Ga0126380_105771382	3300010043	Tropical Forest Soil	MKDLSDLSRQLGVMGGAGAAVFGDHFEPGREVEKKHLDNIQNVFDRFFGAETR*
Ga0126384_100122965	3300010046	Tropical Forest Soil	MKDLSDLSKQLGVMGGAGAAVFGEHFEPGRDAGQKHLDNIQNVFDRFFGAEGR*
Ga0126384_105451663	3300010046	Tropical Forest Soil	QGRQGQSPRTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKGHVDNIESVFDRFFGAQRRE*
Ga0126384_121492202	3300010046	Tropical Forest Soil	MPQGRQGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQSVFDRFFGAQRR*
Ga0126382_116151932	3300010047	Tropical Forest Soil	MKDLSDLSKQLGVMGGAGAAVFGDRFEVGREVEQGHLDNIQGVFD
Ga0126382_116820361	3300010047	Tropical Forest Soil	MKDLSDLSKQLGVVGGVGEAVFGDRFEVGRDVNEAHLDSIQGVLDRFFNAQRR*
Ga0126382_117210702	3300010047	Tropical Forest Soil	GAVGGPAQMPPGRQGQSPQIKDLSDLSRQLGVMGGAGAAVFGDHFEAGRDVDQSHVDNIQGVFDRFFGAQRR*
Ga0126382_120676532	3300010047	Tropical Forest Soil	LGGAGGAAPAPRSGPSPQMKDLSDLSRQLGVMGGAGAAVFGDRFEIGREVEQGHLDNIQSVFANFFGAQRR*
Ga0126373_116064822	3300010048	Tropical Forest Soil	MKDLSDLSRQLGVMGGAGAAVFGDHFEPGREVEKNHLDNIQNVFDRFFGAETR*
Ga0126370_125965701	3300010358	Tropical Forest Soil	LSRQLGVICGAGAAVFGDHFKPGREVEKKHLDNIQNVFDRFFGAETR*
Ga0126376_100084434	3300010359	Tropical Forest Soil	MKDLSDLSKQLGVMGGAGAAVFGEHFEPGRDAGQKHLDKIQNVFDRFFGAEGR*
Ga0126376_102730641	3300010359	Tropical Forest Soil	PPRSGQSPQMKDLSDLSWQLGVMGGAGAAVFGDRFEVGREVEQGHLDNIQSVFANFLGAQRR*
Ga0126376_109948922	3300010359	Tropical Forest Soil	KDLSDKSKQLGVMGGAGATVFGDHFEVGRDVDKSHADNLQSVFDRFSDAQRR*
Ga0126376_128672272	3300010359	Tropical Forest Soil	PAQMPQGRQGPSPQLKDLSDLSKKLGVMGGAGAAVFGDHLEPGREVEKKHLDNIQDVFDRFFGVQGR*
Ga0126372_113711801	3300010360	Tropical Forest Soil	QSPSTKDLSDLSRQLGVRGGAGEAVFGDRLEVGRDVAQDHLDSILSVLDRFFGAQRR*
Ga0126377_107009133	3300010362	Tropical Forest Soil	QMKDLSDLSKQLGVMGGAGAAVFGEHFEPGRDAGQKHLDKIQNVFDRFFGAEGR*
Ga0126377_109978212	3300010362	Tropical Forest Soil	MPQGRQASSPQMKDLSDLSKQLGVMGGAGAAVFGEHFEPGRDAGQKHVDNIQNVFDRFFGAEGR*
Ga0126377_117163292	3300010362	Tropical Forest Soil	AWQSPQMKHSSDLSKQLGVMGGVGAAVFGDRFEVGRDVEQDHLDNIQGVFDRLVTQRRLLPARDPEK*
Ga0126379_112313923	3300010366	Tropical Forest Soil	SPQLKDLSDLSKQLGVMGGAGAAVFGDRFEVGRDVEQGHLDNIQGVFANFFGAQRR*
Ga0126379_123606801	3300010366	Tropical Forest Soil	MPQGRQGQSPHTKDLSDLSKQLGVTGGAGAAVFGDHFETGRDVEKGHVDNIESVFDRFFGAQRRE*
Ga0126379_132102571	3300010366	Tropical Forest Soil	KDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQSVFDRFFGAQRR*
Ga0126381_1008248552	3300010376	Tropical Forest Soil	LSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHLDNIQSVFDRFFGAQRRE*
Ga0126381_1011101653	3300010376	Tropical Forest Soil	ASSPQMKDLSDLSKQLGVMGGAGAAVFGEHFEPGRDAGQKHLDKIQNVFDRFFGAEGR*
Ga0126381_1034079052	3300010376	Tropical Forest Soil	SPQLKDLSDLSRQLGVMGGAGAAVFGDHFEAGQDVEQSHVDNIQNVFDSFFGRQKR*
Ga0126381_1040657211	3300010376	Tropical Forest Soil	ASSPQMKDLSDLSKQLGVMGGAGAAVFGEHFEPGRDAGQKHVDNIQNVFDRFFGAEGR*
Ga0126383_106205912	3300010398	Tropical Forest Soil	MPQGRQGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHLDNIQSVFDRFFGAQRRE*
Ga0138562_10497411	3300011084	Peatlands Soil	MKDLSELTKQLGVMGGAGAAVFGDRFEHGQNVDQSHLDNIQGILDRSSGADRR*
Ga0138573_12933271	3300011089	Peatlands Soil	PTPIPTQAPNPPMKDLSELTKQLGVMGGAGAAVFGDRFEHGQNVDQSHLDNIQGILDRSSGADRR*
Ga0137390_115045431	3300012363	Vadose Zone Soil	MPQGRQGQSPQIKDLSDLSKQLGVMGGVGAAVFGDHFEAGRDVEKEHIDNIQSVFDRFFGAQRRE*
Ga0164300_105797612	3300012951	Soil	QGRQGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKGHVDNIESLFDRFFGAQRRE*
Ga0164301_118170852	3300012960	Soil	AQMPQRRQGQSPELKDLSDLTKKLGVMGGAGAAVFGDRFEVGRDVDKSHVDNLQSVFDRFFGAQRR*
Ga0126369_118847203	3300012971	Tropical Forest Soil	QMPQGRQGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHLDNIQSVFDRFFGAQQR*
Ga0164309_112715762	3300012984	Soil	GQSPQITDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKGHVDNIESVFDRFFGAQRRE*
Ga0164307_112101302	3300012987	Soil	SDLSRQLGVMGDAGAAVFGDHFEAGRDVEQSHVDSIQNVFDRLFGTQNR*
Ga0075342_11498572	3300014320	Natural And Restored Wetlands	GGGPGRAPQQRGPSPQAPSPQMKDLSDLSKQLGVMGGAGQAVFGERFEVGRDVEQEHLQSIQSVFDRFFGPQQR*
Ga0132256_1010385271	3300015372	Arabidopsis Rhizosphere	QSPQLKDLSDLTRQLGVTGGAGTAVFGDHLEPGRDIEQVHVDNIQSVFDRFFGTQKR*
Ga0132255_1046018752	3300015374	Arabidopsis Rhizosphere	KDLSDLSRQLGVMGGAGAAVFGDRFEVGRKVEQGHLDNIQSVFANFLGAQRR*
Ga0182036_117759292	3300016270	Soil	QGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHLDNIQSVFDRFFGAQQR
Ga0182041_102622213	3300016294	Soil	MKDLSDLTRQLGVMGGAGAAVFGDHFEIGREVEKKHLDNIQNVFDRFFGVQGR
Ga0182041_107522211	3300016294	Soil	MKDLSDRTRQLGIMGGAGAAVFGDHFEVGRDVEQRHVDDLQRVFERFFSAGAR
Ga0182033_101271621	3300016319	Soil	PSPPMKDLSDRSKHLGLMGGVGAAVFGDHFEAGRDVDQSHVNSIQRVLDRYFGAQQR
Ga0182039_100717642	3300016422	Soil	MKDLSDRSKHLGLMGGVGAAVFGDHFEAGRDVDQSHVDSIQRVLDRYFGAQQC
Ga0182039_108189512	3300016422	Soil	RPGGSPKLKDLSDLTRQLGVMGGAGAVVFGDHFEAGQDVEQSHVDNIQNVFDSFFGRQKR
Ga0126371_109920391	3300021560	Tropical Forest Soil	QGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFETGRAVEKEHLDSIQSVFDRFFGAQQR
Ga0126371_136052671	3300021560	Tropical Forest Soil	QAPSPPMKDLSDLSKQLNRMGGAGAALFGDRFEHGQDVEQDHLDSIQGVFDRFFGAPRR
Ga0257165_10768781	3300026507	Soil	VGGPAQMPQGRQGQSPQIKDLSDLSKQLGAMGGAGAAVFGDHFEAGRDVEKEHIDNIQSVFDRFFGAQRRE
Ga0207723_1180712	3300026824	Tropical Forest Soil	PSPPMKDLSDLSKQLNRMGGAGAALFGDQFEHGQEVEQDHLDNVQGIFDRFFGAQRR
Ga0207722_10244601	3300027003	Tropical Forest Soil	PMKDLSDLSKQLNRMGGAGAALFGDQFEHGQEVEQDHLDNVQGIFDRFFGAQRR
Ga0207740_10341222	3300027011	Tropical Forest Soil	LSKQLNRMGGAGAALFGDQFEHGQEVEQDHLDNVQGIFDRFFGAQRR
Ga0207726_10249331	3300027045	Tropical Forest Soil	GRQAPAPPMKDLSDLSKQLNRMGGAGAALFGDQFEHGQEVEQDHLDNVQGIFDRFFGAQR
Ga0318534_107936661	3300031544	Soil	SPPMKDLSDLSKQLNRMGGAGAALFGDQFEHGQDVEQDHLDNIQGVFDRFFGAPRR
Ga0318541_102956191	3300031545	Soil	PQGRQGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQGVFERFFGAQRR
Ga0318541_103284172	3300031545	Soil	QSPQMKDLSDLTRQMGGAGAAVFGDQFEVGRDVEKSQLERFRTVFDQFQAGRSR
Ga0318541_107325181	3300031545	Soil	RQGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIESVFDRFFGARRH
Ga0318538_101139361	3300031546	Soil	DLSDLSKQLNRMGGAGAALFGDQFEHGQDVEQDHLDNIQGVFDRFFGAPRR
Ga0318528_101453203	3300031561	Soil	MKDLSDLTRQLGVMGGAGAAVFGDHFEIGREVEKKHLDNIQNVFDRFF
Ga0310915_100413734	3300031573	Soil	GPSPPMKDLSDRSKHLGLMGGVGAAVFGDHFEAGRDVDQSHVDSIQRVLDRYFGAQQC
Ga0310915_102321513	3300031573	Soil	MKDLSDLTRQLGVMGGAGAAVFGDHFEPGREVEKKHLDNIQNVFDRFFGVQGR
Ga0310915_106916271	3300031573	Soil	DLSKKLGVMGGAGAAVFGDHLEVGRDVDKSHLDNLQSVFGQFTGAQRR
Ga0318561_108193832	3300031679	Soil	MKDLSDLSKQLNRMGGAGAALFGDQFEHGQDVEQDHLDNIQGVFDRFFGAPRR
Ga0318496_102314883	3300031713	Soil	GRQAPSPPMKDLSDLSKQLNRMGGAGAALFGDQFEHGQDVEQDHLDNIQGVFDRFFGAPR
Ga0306917_102686032	3300031719	Soil	LSDLSKTLGVMGGAGAAVFGDHFEVGQDVDKGHVANIRSVFERFMSAQRR
Ga0318501_101192523	3300031736	Soil	MSPPMKDLSDLSKQLNRMGGAGAALFGDQFEHGQDVEQDHLDNIQGVFDRFFGAPRR
Ga0318509_102216382	3300031768	Soil	PGQQGPSPPMKDLSDRSKHLGLMGGVGAAVFGDHFEAGRDVDQSHVDSIQRVLDRYFGAQQC
Ga0318546_102367212	3300031771	Soil	GPSPPMKDLSDRSKHLGLMGGVGAAVFGDHFEAGRDVDQSHVNSIQRVLDRYFGAQQC
Ga0318547_101411041	3300031781	Soil	MPQGRQASPPAKDLSDLSKQLGLMGGAGAALFGGRLDHGQDVDRSHLDNIQSVFDRFFTAQQ
Ga0318576_102446851	3300031796	Soil	SPPAKDLSDLSKQLGLMGGAGAALFGGRLDHGQDVDRSHLDNIQSVFDRFFTAQQ
Ga0318497_101036311	3300031805	Soil	SKQLNRMGGAGAALFGDQFEHGQDVEQDHLDNIQGVFDRFFGAPRR
Ga0310917_101880471	3300031833	Soil	SDLSKQLGLMGGAGAALFGGRLDHGQDVDRSHLDNIQSVFDRFFTAQQ
Ga0310917_102680922	3300031833	Soil	VGGPAQMPQGRQGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQGVFERFFGAQRR
Ga0306919_101470601	3300031879	Soil	GPTQTPQGRQGQSPQMKDLSDLTRQLGVMGGAGAAVFGDHFEIGREVEKKHLDNIQNVFDRFFGVQGR
Ga0306919_114946851	3300031879	Soil	PGQMPQGQQGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQSVFDSFFGAKRRE
Ga0306919_115192281	3300031879	Soil	ATRGPAQMPQGRSGGSPQLKDLSDLSRQLGVMGGAGAAVFGDHFDAGQDVEQSHVDNIQNVFDSFFGRQKL
Ga0318551_101959911	3300031896	Soil	VQMPQQRQAPSPPMKDLSDLSKQLNRMGGAGAALFGDQFEHGQDVEQDHLDNIQGVFDRFFGAPRR
Ga0306923_108327181	3300031910	Soil	MKDLSDLSKTLGVMGGAGAAVFGDHFEVGQDVDKSHVANIQNVFERFMSAQRR
Ga0306921_118840312	3300031912	Soil	MKDLSDLSKTLGVMGGAGAAVFGDHFEVGQDVDKGHVANIRSVFERFMSAQRR
Ga0310912_103073253	3300031941	Soil	QMPQGRQGQSPQIKDLSDLGKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQSVFDRFFGAQRRE
Ga0310913_100740644	3300031945	Soil	MKDLSDLTRQLGVMGGAGAAVFGDHFEPGREVEKKHLDNIQNVFDRFFGAETR
Ga0310913_112599071	3300031945	Soil	KDLSDLTKQLGVMGGAGAAVFGDHFEVGRDVEKSHLESIQTVLDQFQAGRPR
Ga0310910_105173762	3300031946	Soil	MPQGRQGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQSVFDRFFGAQRR
Ga0310910_114097251	3300031946	Soil	VGGPGQMPQGQQGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQSVFDRFFDAQRR
Ga0310909_102137062	3300031947	Soil	MKDLSDLTRQLGVMGGAGAAVFGNHFEPGREVEKKHLDNIQNVFDRFFGVQGR
Ga0310909_104743882	3300031947	Soil	GGRQSPQMKDLSDLTRQMGGAGAAVFGDQFEVGRDVEKSQLERFRTVFDQFQAGRSR
Ga0310909_114342881	3300031947	Soil	MKDLSDLSKTLGVMGGAGAAVFGDHFEVGQDVDKSHVANIQ
Ga0310909_115836561	3300031947	Soil	GGAVSGPTQMPQGRQGQSPQMKDLSDLSRQLGVMGGAGAAVFGDHFEPGREVEKKHLDNIQNVFDRFFGAETS
Ga0306926_103563061	3300031954	Soil	SRERPHPDAAQGQSPQMKDLSDLTRQLGVMGGAGAAVFGDHFEPGREVEKKHLDNIQNVFDRFFGVQGR
Ga0306926_129512642	3300031954	Soil	SVQMPQGRQSPQMKDLSDRTKQLGLMEGVGQAVFGEQIEHGQDVEQSHLDNIQSVFDHFIGVTRR
Ga0318558_106804181	3300032044	Soil	PTQMPQGRQGQSPQMKDLSDLTRQLGVMGGAGAAVFGNHFEPGREVEKKHLDNIQNVFDRFFGVQGR
Ga0318570_104568382	3300032054	Soil	LAGGQAQTSPGQQGPSPPMKDLSDRSKHLGLMGGVGAAVFGDHFEAGRDVDQSHVDSIQRVLDRYFGAQQC
Ga0318533_101423373	3300032059	Soil	AQMPQGRQGQSPQTKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQGVFERFFGAQRR
Ga0306924_114120353	3300032076	Soil	RQGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKEHIDNIQSVFDSFFGAKRR
Ga0318518_100512891	3300032090	Soil	SDLSKQLNRMGGAGAALFGDQFEHGQDVEQDHLDNIQGVFDRFFGAPRR
Ga0307471_1008624942	3300032180	Hardwood Forest Soil	PAQMPQGRQAPSPQIKDLSDLSKQLGVMGGAGAAVFGEHFEPGRDAGQKHLDNIQNVFDRFFGAEGR
Ga0307471_1036358331	3300032180	Hardwood Forest Soil	FGGAVGGSAQTPQGRQGQSRELRDLSDLTRHLCVIGGAGAAVFGDHFEVGRDVDKRHVDNLQSLFDRFFGAQRP
Ga0307471_1036484922	3300032180	Hardwood Forest Soil	GAAGSPAGVPQRPVPSPQMKNLSDLSKQLGVMGGVGAAVFGERLEAGREVEQDHLDNIQSVFDRFFGR
Ga0306920_1033594881	3300032261	Soil	AVGGPAQMPQGRQGQSPQIKDLSDLSKQLGVMGGAGAAVFGDHFETGRDVEKGHVDKIESVFDRFFGAQRRE
Ga0326726_118088371	3300033433	Peat Soil	KDLSDLTRQLGVMGGAGAAVFGDKLEHGQNVDQSHLDNIQDILDRSYGADRR
Ga0326723_0303600_416_577	3300034090	Peat Soil	MKDLSDLTRQLGVMGGAGAAVFGDKLEHGQNVDQSLLDNIQGILDRPYGAERR
Ga0364929_0101305_2_145	3300034149	Sediment	LSKKLGAAGGVGAAVFGDRFEHGREVDQGHLDNIQSVFDQFFGAKRR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072709

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences