Metagenome / Metatranscriptome Family F072714

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072714
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	48 residues
Representative Sequence	MTIQMPVDDKVLAADTQTTTPPLYQRVLIAVADADQVGPVVELARR
Number of Associated Samples	95
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	100.00 %
% of genes near scaffold ends (potentially truncated)	100.00 %
% of genes from short scaffolds (< 2000 bps)	93.39 %
Associated GOLD sequencing projects	93
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.30

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (97.521 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (46.281 % of family members)
Environment Ontology (ENVO)	Unclassified (54.545 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (46.281 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 40.54% β-sheet: 0.00% Coil/Unstructured: 59.46%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.30
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.30
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF01381	HTH_3	19.01
PF00196	GerE	3.31
PF01244	Peptidase_M19	0.83
PF04909	Amidohydro_2	0.83
PF13560	HTH_31	0.83
PF02423	OCD_Mu_crystall	0.83
PF02558	ApbA	0.83
PF13344	Hydrolase_6	0.83

COG ID	Name	Functional Category	% Frequency in 121 Family Scaffolds
COG2355	Zn-dependent dipeptidase, microsomal dipeptidase homolog	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG2423	Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin family	Amino acid transport and metabolism [E]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	97.52 %
Unclassified	root	N/A	2.48 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	97.52 %
Unclassified	root	N/A	2.48 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	97.52 %
Unclassified	root	N/A	2.48 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	97.52 %
Unclassified	root	N/A	2.48 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	97.52 %
Unclassified	root	N/A	2.48 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	2.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000156\|NODE_c0391411	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	741	Open in IMG/M
3300005180\|Ga0066685_11003604	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	551	Open in IMG/M
3300005187\|Ga0066675_10113006	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1813	Open in IMG/M
3300005436\|Ga0070713_100951008	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	827	Open in IMG/M
3300005436\|Ga0070713_101977661	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	565	Open in IMG/M
3300005569\|Ga0066705_10274999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1068	Open in IMG/M
3300005764\|Ga0066903_105135682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
3300006028\|Ga0070717_10372497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1279	Open in IMG/M
3300006172\|Ga0075018_10273472	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	825	Open in IMG/M
3300006175\|Ga0070712_100319261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1262	Open in IMG/M
3300006175\|Ga0070712_100978938	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	731	Open in IMG/M
3300006804\|Ga0079221_11526747	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	537	Open in IMG/M
3300006804\|Ga0079221_11594225	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	528	Open in IMG/M
3300006904\|Ga0075424_101178595	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	816	Open in IMG/M
3300006954\|Ga0079219_12272547	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300009523\|Ga0116221_1111116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1207	Open in IMG/M
3300010046\|Ga0126384_10648551	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	930	Open in IMG/M
3300010046\|Ga0126384_12180239	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	533	Open in IMG/M
3300010047\|Ga0126382_10006160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5450	Open in IMG/M
3300010048\|Ga0126373_12503496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300010048\|Ga0126373_13323536	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	500	Open in IMG/M
3300010359\|Ga0126376_11137796	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	791	Open in IMG/M
3300010360\|Ga0126372_11690742	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	674	Open in IMG/M
3300010360\|Ga0126372_13195068	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	509	Open in IMG/M
3300010361\|Ga0126378_10481813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1355	Open in IMG/M
3300010362\|Ga0126377_11171585	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	838	Open in IMG/M
3300010371\|Ga0134125_10816313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1026	Open in IMG/M
3300010373\|Ga0134128_12969213	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	522	Open in IMG/M
3300012971\|Ga0126369_10612581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1160	Open in IMG/M
3300013306\|Ga0163162_10645180	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1183	Open in IMG/M
3300015374\|Ga0132255_102377428	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	809	Open in IMG/M
3300016270\|Ga0182036_11376136	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	590	Open in IMG/M
3300016319\|Ga0182033_11140063	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	697	Open in IMG/M
3300016319\|Ga0182033_11918619	Not Available	539	Open in IMG/M
3300016357\|Ga0182032_11120544	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	675	Open in IMG/M
3300016422\|Ga0182039_11103188	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	715	Open in IMG/M
3300017943\|Ga0187819_10018529	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4026	Open in IMG/M
3300017973\|Ga0187780_10159950	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1564	Open in IMG/M
3300017995\|Ga0187816_10409945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	603	Open in IMG/M
3300017999\|Ga0187767_10146680	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	703	Open in IMG/M
3300017999\|Ga0187767_10255035	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300018012\|Ga0187810_10041673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1713	Open in IMG/M
3300018058\|Ga0187766_10817149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	652	Open in IMG/M
3300018433\|Ga0066667_10792875	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	804	Open in IMG/M
3300021372\|Ga0213877_10286694	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	555	Open in IMG/M
3300021478\|Ga0210402_11183630	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	692	Open in IMG/M
3300024290\|Ga0247667_1027632	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1085	Open in IMG/M
3300025915\|Ga0207693_11006654	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	636	Open in IMG/M
3300025915\|Ga0207693_11179641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	578	Open in IMG/M
3300025928\|Ga0207700_11190862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	680	Open in IMG/M
3300025929\|Ga0207664_11515127	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300025949\|Ga0207667_11982673	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M
3300026023\|Ga0207677_10322377	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1284	Open in IMG/M
3300027787\|Ga0209074_10427282	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300027867\|Ga0209167_10650653	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	577	Open in IMG/M
3300028379\|Ga0268266_12194626	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	524	Open in IMG/M
3300028875\|Ga0307289_10183496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	861	Open in IMG/M
3300029636\|Ga0222749_10811646	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	512	Open in IMG/M
3300031543\|Ga0318516_10222439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1091	Open in IMG/M
3300031544\|Ga0318534_10275481	Not Available	970	Open in IMG/M
3300031561\|Ga0318528_10641232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	569	Open in IMG/M
3300031561\|Ga0318528_10657334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	561	Open in IMG/M
3300031564\|Ga0318573_10137296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1276	Open in IMG/M
3300031640\|Ga0318555_10632160	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	579	Open in IMG/M
3300031679\|Ga0318561_10283052	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	906	Open in IMG/M
3300031679\|Ga0318561_10512617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	660	Open in IMG/M
3300031680\|Ga0318574_10169496	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1246	Open in IMG/M
3300031681\|Ga0318572_10579581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	668	Open in IMG/M
3300031681\|Ga0318572_10621088	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	644	Open in IMG/M
3300031682\|Ga0318560_10638223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	576	Open in IMG/M
3300031724\|Ga0318500_10236800	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	882	Open in IMG/M
3300031736\|Ga0318501_10224559	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	988	Open in IMG/M
3300031736\|Ga0318501_10307652	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	847	Open in IMG/M
3300031736\|Ga0318501_10644988	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	582	Open in IMG/M
3300031748\|Ga0318492_10522172	Not Available	631	Open in IMG/M
3300031764\|Ga0318535_10425492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	592	Open in IMG/M
3300031768\|Ga0318509_10025327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2835	Open in IMG/M
3300031771\|Ga0318546_10164226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1503	Open in IMG/M
3300031777\|Ga0318543_10358610	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	653	Open in IMG/M
3300031792\|Ga0318529_10497946	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
3300031792\|Ga0318529_10514467	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556	Open in IMG/M
3300031793\|Ga0318548_10099867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1388	Open in IMG/M
3300031797\|Ga0318550_10267153	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	830	Open in IMG/M
3300031797\|Ga0318550_10271697	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	822	Open in IMG/M
3300031798\|Ga0318523_10003723	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	5550	Open in IMG/M
3300031798\|Ga0318523_10280978	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	831	Open in IMG/M
3300031819\|Ga0318568_10721011	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	619	Open in IMG/M
3300031823\|Ga0307478_11153781	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	646	Open in IMG/M
3300031845\|Ga0318511_10263000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	775	Open in IMG/M
3300031846\|Ga0318512_10579293	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	572	Open in IMG/M
3300031859\|Ga0318527_10316379	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	665	Open in IMG/M
3300031879\|Ga0306919_10772125	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	739	Open in IMG/M
3300031879\|Ga0306919_11482874	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	511	Open in IMG/M
3300031880\|Ga0318544_10371749	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	556	Open in IMG/M
3300031893\|Ga0318536_10227315	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	949	Open in IMG/M
3300031893\|Ga0318536_10679928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	513	Open in IMG/M
3300031897\|Ga0318520_10146217	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1367	Open in IMG/M
3300031897\|Ga0318520_10362975	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	880	Open in IMG/M
3300031946\|Ga0310910_10637296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	844	Open in IMG/M
3300031947\|Ga0310909_10444539	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1088	Open in IMG/M
3300031947\|Ga0310909_10782053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	789	Open in IMG/M
3300031954\|Ga0306926_10487858	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1515	Open in IMG/M
3300031954\|Ga0306926_10724878	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1204	Open in IMG/M
3300031954\|Ga0306926_10885261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1070	Open in IMG/M
3300031981\|Ga0318531_10215057	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	867	Open in IMG/M
3300031981\|Ga0318531_10567091	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514	Open in IMG/M
3300032001\|Ga0306922_10898275	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	920	Open in IMG/M
3300032001\|Ga0306922_10935147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	898	Open in IMG/M
3300032008\|Ga0318562_10689122	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	588	Open in IMG/M
3300032039\|Ga0318559_10133232	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1121	Open in IMG/M
3300032042\|Ga0318545_10373851	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	514	Open in IMG/M
3300032043\|Ga0318556_10043519	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2146	Open in IMG/M
3300032052\|Ga0318506_10411850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	599	Open in IMG/M
3300032063\|Ga0318504_10141542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1103	Open in IMG/M
3300032065\|Ga0318513_10375269	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	693	Open in IMG/M
3300032066\|Ga0318514_10187883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1080	Open in IMG/M
3300032180\|Ga0307471_103100100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	589	Open in IMG/M
3300032261\|Ga0306920_100367912	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2138	Open in IMG/M
3300033289\|Ga0310914_10077763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2809	Open in IMG/M
3300033289\|Ga0310914_10126022	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2235	Open in IMG/M
3300033290\|Ga0318519_10912362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	543	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.21%
Host-Associated	Host-Associated	4.96%
Engineered	Engineered	0.83%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.91%
Plants	Host-Associated → Plants	4.96%
Aquatic	Environmental → Aquatic	3.31%
Solid Waste	Engineered → Solid Waste	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.91%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.31%
Freshwater	Environmental → Aquatic → Freshwater	2.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.65%
Sediment	Environmental → Aquatic → Sediment	0.83%
Grass	Engineered → Solid Waste → Grass	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.34%
Loam	Environmental → Terrestrial → Soil → Loam	8.26%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.31%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.48%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%
Composting	Engineered → Solid Waste → Grass → Composting	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.68%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.05%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	7.44%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	3.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.31%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.48%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%
Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	46.28%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.74%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	9.09%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.61%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.31%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.31%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.48%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.48%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.65%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.65%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.83%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.83%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Sugar Cane Bagasse Incubating Bioreactor	Engineered → Solid Waste → Grass → Composting → Bioreactor → Sugar Cane Bagasse Incubating Bioreactor	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000156	Sugar cane bagasse incubating bioreactor microbial communities from Sao Carlos, Brazil, that are aerobic and semianaerobic	Engineered	Open in IMG/M
3300005180	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_134	Environmental	Open in IMG/M
3300005187	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009523	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_8_FC metaG	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300021372	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R01	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300024290	Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK08	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027787	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032008	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
NODE_03914111	3300000156	Sugar Cane Bagasse Incubating Bioreactor	MTSKMPVDDKVLAGETQTTTQTAWQHALIAVADADQVGP
Ga0066685_110036041	3300005180	Soil	MTIQMPVDHEVLAADMQTTTPPLYQRVLIAVADADQVGPVAELA
Ga0066675_101130061	3300005187	Soil	MTSKMPVDEKVLAGDTQMTTDTQTTPQPAWQRALIAVADADQVGPVVELARRADVGEARVLHLNL
Ga0070713_1009510082	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTIKMPADNKMLAANTQATTPPLYQRVLIAVADADQVGPVVELARRAGVREARVLH
Ga0070713_1019776611	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MTIQVPVGDEVLAAGMQTATPPLYQRVLIAVADADQVGPVVELARRAGV
Ga0066705_102749991	3300005569	Soil	MTIQVPVDKEVLAADMQTTTPPLYQRVLIAVADADQVGPVVEL
Ga0066903_1051356822	3300005764	Tropical Forest Soil	MTSKMPVDDKVLAADTQTTTPPAWQRALIAVADADQVGPVVELARR
Ga0070717_103724972	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MTIQMPVHDKVLAADTQTTTPPLYQRVLIAVADASQVGPVAELARRAGVREARVLHLNLRES
Ga0075018_102734721	3300006172	Watersheds	MTIQVPVDKELLAADVQTATPPLYHRVLIAVADAD
Ga0070712_1003192611	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTSKMPVDDKVLAGDTQNTTPPLYQRVLIAIADASQVGPIAELARRAGVREARVLHLNL
Ga0070712_1009789381	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MTIQMPADDKVLAADTQTTTPPLYQRVLIAVADADQVGPV
Ga0079221_115267472	3300006804	Agricultural Soil	MTIQMPVHDKVLAADTQTTTPPLYQRVLIAVADASQVGPVAELARRAGVREARVLHLN
Ga0079221_115942251	3300006804	Agricultural Soil	MTIQVPADNEALAAGMQTTTPPLYQRVLIAVADAGQVGPV
Ga0075424_1011785952	3300006904	Populus Rhizosphere	MTIQVPVDEEVLAADMQTTTPPLYQRVLIAVADADQVGPVVELARRAGVREARVLHLNL
Ga0079219_122725472	3300006954	Agricultural Soil	MTSKMPVDDKALAGDTQNTQNTTPPLYQRVLIAIADASQVGPTAELA
Ga0116221_11111161	3300009523	Peatlands Soil	MTIQMPVDDKVLAADTQTTTPPLYQRVLIAVADADQVGPVVELARR
Ga0126384_106485511	3300010046	Tropical Forest Soil	MTIQTPARHTTPAAGTPTTTPPLYQRALLAVADADQVGPVVELARRAGV
Ga0126384_121802392	3300010046	Tropical Forest Soil	MTSKMPVDEKVLADDTQTTTPPAYQRVLIAVADASQIGPVVELARRTGVGEARVLHLNLRES
Ga0126382_100061601	3300010047	Tropical Forest Soil	MTIKMPVDDKVLAAQTQTTTPPLYQRVLIAVADAGQVGPVVELARRAGVREARVLHLN
Ga0126373_125034962	3300010048	Tropical Forest Soil	MTIQMPAHEKVLAADTQTTTPPLYHRVLIAVADADQVGPVVELARRAG
Ga0126373_133235361	3300010048	Tropical Forest Soil	MTIQMPVHDKVLSADTQTTTPPLYQRVLIAVADADQVGAVVELARRAGVREARVLHLNLR
Ga0126376_111377962	3300010359	Tropical Forest Soil	MTIQMPVHDKVLSADTQTTTPPLYQRVLIAVADADQVGPVVELARRA
Ga0126372_116907422	3300010360	Tropical Forest Soil	MTIQMPVDDKVLAADTQTTTPPLYQRVLIAVADADQVGPVVELARRAGVREARVLH
Ga0126372_131950682	3300010360	Tropical Forest Soil	MTIKMPVDDKVLAAQTQTTTPPLYQRVLIAVADAGQVGPVV
Ga0126378_104818132	3300010361	Tropical Forest Soil	MTSKMPVDEKVLEGDAHTTTPPAYKRALIAVADASQVGPLVELARRS
Ga0126377_111715851	3300010362	Tropical Forest Soil	MTIKMPVDDKALAADTQTTTPPLYQRVLIAVADADQVGPVVELARLAGVREARVLHLNL
Ga0134125_108163132	3300010371	Terrestrial Soil	MTIQVPVGDEVLAAGMQTATPPLYQRVLIAVADADQVGPVVELARRAGVRE
Ga0134128_129692132	3300010373	Terrestrial Soil	MTIKMLAVNKMLAANTQATTPPLYQRVLIAVADAD
Ga0126369_106125811	3300012971	Tropical Forest Soil	MTSKMVDEKVLADDTQTTTPPAYKRVLIAVADASQVGPVVELARRTGV
Ga0163162_106451802	3300013306	Switchgrass Rhizosphere	MTSKMPVDEKVLAGDTLTTTDTQTTTPPAWQRALIAVADADQVGPVVELARRA
Ga0132255_1023774281	3300015374	Arabidopsis Rhizosphere	MTIQVPADDEVLEAGLPTTTPLLYQRVLIAVADADQVGPVVEL
Ga0182036_113761361	3300016270	Soil	MTSTMPVDDKVLAVDTQIPAQTIYQRVLIAVADASQIGPVVELARR
Ga0182033_111400632	3300016319	Soil	MTSTMPVDDKVLAVDTQTPTQPINQRVLIAVADASQVGPLVELARQAG
Ga0182033_119186191	3300016319	Soil	MSSNTQMPVDDTAVAAGAQTTTPPLYQRVLIAVADAGQVGPAVELARQAGVREARALHLNLR
Ga0182032_111205441	3300016357	Soil	MTSKTPVDEKVLATDTQTTTPLLYQRVLIAVADAGQV
Ga0182039_111031881	3300016422	Soil	MTIQMPVDDKVLTADTQTTTPSLYQRVLIAVADAG
Ga0187819_100185291	3300017943	Freshwater Sediment	MTIQLPAEDKVLAADAPPLYQRVLIAVADAEQVGPVV
Ga0187780_101599502	3300017973	Tropical Peatland	MTSKMPVDEKVLAEDTQPAYPRVLIAVADASQVGPVVELARRSGVGEARVLHL
Ga0187816_104099452	3300017995	Freshwater Sediment	MTIHMPVDDKVLAADTQTTTPTLYQRVLIAVADAD
Ga0187767_101466801	3300017999	Tropical Peatland	MTSKMTVDEKVLAADPQTTTQPAYPRVLIAVADASQVGPVVELASRSGVGE
Ga0187767_102550352	3300017999	Tropical Peatland	MTSKMTVDDKVRAADTPTTTQPAYPRVLIAVADASQIGP
Ga0187810_100416731	3300018012	Freshwater Sediment	MTIHLPAEDKVLAADAPPLYQRVLIAVADADQVGPVVE
Ga0187766_108171492	3300018058	Tropical Peatland	MTSKMPVDEKVLASDTQTTTPSLYQRVLIAVADASQ
Ga0066667_107928752	3300018433	Grasslands Soil	MTSKMPVDEKVLAGDTQMTTDTQTTPQPAWQRALIAVADADQVGPVVELAR
Ga0213877_102866941	3300021372	Bulk Soil	MTIQMPVHDKVLAADTQATTPPLYQRVLIAVADADQVGPVAELARRAGVREARVLHLNL
Ga0210402_111836302	3300021478	Soil	MTSKMPVDDKVLATDTQTTTPPLYQRVLIAVADAGQVGPVVELARRAGVREASLL
Ga0247667_10276321	3300024290	Soil	MTSKMPVDDKVLVGETQNTTPPLYQRVLIAIADASQ
Ga0207693_110066542	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTIQMPADDKVLAADTQTTTPPLYQRVLIAVADADQVGPVVELAHRAGVRE
Ga0207693_111796412	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MTIKMPADNKMLAANTQATTPPLYQRVLIAVADADQVGPV
Ga0207700_111908622	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MTIKMPADNKMLAANTQATTPPLYQRVLIAVADADQVGPVVELARRAG
Ga0207664_115151272	3300025929	Agricultural Soil	MTIQMPADDKVLAADTQTTTPPLYQRVLIAVADADQVGPVVELAHRAGVREARVLHLNLR
Ga0207667_119826732	3300025949	Corn Rhizosphere	MTSKMPVDEKAPAHETHITTQPTYQRALIAVADASQVGPVVELARRAGVG
Ga0207677_103223771	3300026023	Miscanthus Rhizosphere	MTSKMPVDDKVLVGETQNTTPPLYQRVLIAIADASQVGPVAELARRAGVREARVLHLNL
Ga0209074_104272822	3300027787	Agricultural Soil	MTIQMPVDDTVLTADPQTETPPLCQRVLVAVADAGQVGPVVELARR
Ga0209167_106506531	3300027867	Surface Soil	MTIQLPAEDKVLAADTPSLYQRVLIAVADADQVGPLVELARRAG
Ga0268266_121946261	3300028379	Switchgrass Rhizosphere	MTSKMPVDDKVLVGETQNTTPPLYQRVLIAIADASQVGPVAELARRAGGPAPL
Ga0307289_101834961	3300028875	Soil	MTIQVPADDEVLEAGLQTTTPPLYQRVLIAVADADQVGPVVELARRAGVREARVLHLN
Ga0222749_108116461	3300029636	Soil	MTIQMPVDHEVLAADMQTTTPPLYQRVLIAVADADQVGPV
Ga0318516_102224391	3300031543	Soil	MTSKMPVDDKVLAGDAHTTTPTAYKRALIAVADASHVG
Ga0318534_102754811	3300031544	Soil	MSSNTQMPVDDTAPAAGAQTTTPPLYQRVLIAVADAGQVGPAVELARQADAREARAAAEAPPGDPIWP
Ga0318528_106412321	3300031561	Soil	MTSKMPVDEKVLATDTQTTTPPLYQRVLIAVADASQVGPVVELA
Ga0318528_106573341	3300031561	Soil	MTIQMPVDDKVLTADTQITAPPLYQRVLIAVADAGQVGPVVELARRAGVREARVLHLN
Ga0318573_101372961	3300031564	Soil	MTSKMPVDDKVLEGDAHTTTPPAYKRALIAVADASQVGPLVGL
Ga0318555_106321601	3300031640	Soil	MTIQMPVDDKVLAADTPTTTPPLYQRVLITVADAGQVGPVVELARRAGVGEARV
Ga0318561_102830521	3300031679	Soil	MTINMPVDDKALAADTQTTPRSLYQRVLIAVADASQVGPMVELAQRAGVGEARVLHLNL
Ga0318561_105126172	3300031679	Soil	MTSKTPVDEKVLATDTQTTTPLLYQRVLIAVADAGQVGPVVELA
Ga0318574_101694961	3300031680	Soil	MTIQMPVDDRALTADPQITTPPLYQRVLIAVADAGQVG
Ga0318572_105795812	3300031681	Soil	MTSKMPVDDKVLEGDAHTTTPPAYKRALIAVADASQVGPLVGLARRS
Ga0318572_106210881	3300031681	Soil	MTINMPVDDKALAADSQTTTPTLYQRVLIAVADAGQVGPVV
Ga0318560_106382232	3300031682	Soil	MTSKTPVDEKVLATDTQTTTPLLYQRVLIAVADAGQVGPVVELARRAGVRE
Ga0318500_102368001	3300031724	Soil	MTSKTPVDDKVLATDTQTTTPPLYQRVLIAVADAGQVGPAVELA
Ga0318501_102245592	3300031736	Soil	MTSKMPVDEKVLASDTQTTTPTLYQRVLIAVADASQVGPVVELAR
Ga0318501_103076522	3300031736	Soil	MTSKMPVDDKVLAGDAHTTTPTAYKRALIAVADASQVGPLVELA
Ga0318501_106449881	3300031736	Soil	MTIQMPVDDRALTADPQITTPPLYQRVLIAVADAGQVGPVVERP
Ga0318492_105221721	3300031748	Soil	MSSNTQMPVDDTAVAAGAQTTTPPLYQRVLIAVADAGQVGPAVELARQAGVRE
Ga0318535_104254922	3300031764	Soil	MTSKMPVDDKVLAGDAHTTTPTAYKRALIAVADASQVG
Ga0318509_100253274	3300031768	Soil	MTNTMPVDDKVLSDTETTTQPLNQRVLIAVADANQVGPMVELARRAGVREALV
Ga0318546_101642261	3300031771	Soil	MTNTMPVDDKVLSDTETTTQPLNQRVLIAVADANQVGPMVELARRAGVREALVLHLN
Ga0318543_103586102	3300031777	Soil	MTIQMPVDDKVLTADTQITAPPLYQRVLIAVADAGQVGPVVELARRAGVR
Ga0318529_104979462	3300031792	Soil	MTNTMPVDDKVLSDTETTTQPLNQRVLIAVADANQVGP
Ga0318529_105144671	3300031792	Soil	MTIQMPVDDKVLTADTQITAPPLYQRVLIAVADAGQVGPVVELARRAGVREARVLHLNLR
Ga0318548_100998672	3300031793	Soil	MTIQMPVDDRALTADPQITTPPLYQRVLIAVADAGQVGPVVELARRAGVREARV
Ga0318550_102671532	3300031797	Soil	MTNTMPVDDKVLSDTETTTQPLNQRVLIAVADANQVGPMVELAR
Ga0318550_102716971	3300031797	Soil	MTSKMPVDDKVLATDTQTTTPPLYQRVLIAVADAGQVGP
Ga0318523_100037237	3300031798	Soil	MTNTMPVDDKVLSDTETTTQPLNQRVLIAVADANQ
Ga0318523_102809781	3300031798	Soil	MTIQMPVDDRALTADPQITTPPLYQRVLIAVADAGQVGPVVELARRAD
Ga0318568_107210111	3300031819	Soil	MTSKTPVDEKVLATDTQTTTPLLYQRVLIAVADAGQVG
Ga0307478_111537812	3300031823	Hardwood Forest Soil	MTIQLPAEDKVLAADAPPLYQRVLIAVADADQVGPVVELARRAGVHEARVLHL
Ga0318511_102630001	3300031845	Soil	MTSKTPVDEKVLATDTQTTTPLLYQRVLIAVADAGQVGPVVELAR
Ga0318512_105792932	3300031846	Soil	MTSKTPVDDKVLATDTQTTTPPLYQRVLIAVADAGQVGPVVELARRA
Ga0318527_103163791	3300031859	Soil	MTSRMPVDDKVLAADTQTTTPTLYQRVLIAVADASQVGPVVELARRAGVREARVLH
Ga0306919_107721251	3300031879	Soil	MTSKMPVDEKVLASDTQTTTPTLYQRVLIAVADASQVGPVVELA
Ga0306919_114828742	3300031879	Soil	MTINMPVDDKALAADTQTATQPIYQRVLIAVADAGQVGPMVELARR
Ga0318544_103717492	3300031880	Soil	MTSKMPVDEKVLATDTQTTTPPLYQRVLIAVADASQVGPVVELARRAGVREARV
Ga0318536_102273152	3300031893	Soil	MTSKMPVDEKVLATDTQTTTPPLYQRVLIAVADASQVGPVVELAR
Ga0318536_106799282	3300031893	Soil	MTINMPVDDKALAADTQTATQPIYQRVLIAVADAGQVGPMVELARRSGVG
Ga0318520_101462171	3300031897	Soil	MTSTMPVDDKVLAVDTQTPTQPINQRVLIAVADASQIGPVVELA
Ga0318520_103629751	3300031897	Soil	MTSKTPVDEKVLATDTQTTTPLLYQRVLIAVADAGQVGPVVELARRAGVREARVLQLN
Ga0310910_106372962	3300031946	Soil	MTSKMPVDDKVLEGDAHTTTPPAYKRALIAVADASQVGPLVGLARRSGVGEA
Ga0310909_104445391	3300031947	Soil	MTSKMPVDEKVLASDTQTTTPTLYQRVLIAVADASQVGPVVELARRAGVREARVLHLNLR
Ga0310909_107820532	3300031947	Soil	MTSKTPVDEKVLATDTQTTTPPLYQRVLIAVADASQVGPVVELARRAGVREARVLHLNLR
Ga0306926_104878582	3300031954	Soil	MTSKMPVDEKVLASDTQTTTPTLYQRVLIAVADASQVGPVVELARRAGVREA
Ga0306926_107248781	3300031954	Soil	MTIQMPVDDRALTADPQITTPPLYQRVLIAVADAGQV
Ga0306926_108852611	3300031954	Soil	MTSKMPVDDKVLAGDAHTTTPTAYKRALIAVADASQVGPLVEL
Ga0318531_102150572	3300031981	Soil	MTNTMPVDDKVLSDTETTTQPLNQRVLIAVADANQVGPMVELARRAGVREALVLHLNL
Ga0318531_105670912	3300031981	Soil	MTSKTPVDEKVLATDTQTTTPLLYQRVLIAVADAGQVGPVVELARRAGVREARV
Ga0306922_108982752	3300032001	Soil	MTSKMPVDDKVLAGDAHTTTPTAYKRALIAVADASQVGPLV
Ga0306922_109351472	3300032001	Soil	MTINMPVDDKALAADTQATPRSLYQRVLIAVADASQVGPM
Ga0318562_106891222	3300032008	Soil	MTTQMPVDDKVLAGDTHATTPPLYQRVLIAVADADQVG
Ga0318559_101332321	3300032039	Soil	MTSKMPVDDKVLAGDAHTTTPTAYKRALIAVADASQVGPLVELAR
Ga0318545_103738512	3300032042	Soil	MTIQMPVDDKVLTADTQTTTPSLYQRVLIAVADAGQVGPVVELARRAGVREARVLHLNLR
Ga0318556_100435194	3300032043	Soil	MTSKTPVDDKVLATDTQTTTPPLYQRVLIAVADAGQVGP
Ga0318506_104118501	3300032052	Soil	MTSKMPVDEKVLATDTQTTTPPLYQRVLIAVADASQVGPVVELARRAGVREARVLH
Ga0318504_101415422	3300032063	Soil	MTSKMPVDEKVLATDTQTTTPPLYQRVLIAVADAGQVGPVVELARRAGVRE
Ga0318513_103752692	3300032065	Soil	MTIQMPVDDKVLTADTQTTTPSLYQRVLIAVADAGPT
Ga0318514_101878832	3300032066	Soil	MTSKTPVDEKVLATDTQTTTPLLYQRVLIAVADAGQVGPVVELARRAGV
Ga0307471_1031001001	3300032180	Hardwood Forest Soil	MTIQVPVGDEVLAAGMPTTTPPLYQRVLIAVADAGQVGPVVELARRAGVREARVLHLNL
Ga0306920_1003679121	3300032261	Soil	MTSKTPVDDKVLATDTQTTTPPLYQRVLIAVADAGQVGPVVELARRAGVREARVLH
Ga0310914_100777634	3300033289	Soil	MTSKMPVDDKVLEGDAHTTTPPAYKRALIAVADASQVGPLVGLARRSGVGEARVLH
Ga0310914_101260221	3300033289	Soil	MTSTMPVDDKVLAVDTQTPTQPINQRVLIAVADASQIGPVVELARRAGVREARVLH
Ga0318519_109123621	3300033290	Soil	MTSKTPVDSKVLAADTQTTTPPLYQRVLIAVADASQVGP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072714

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences