Metagenome / Metatranscriptome Family F072803

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072803
Family Type	Metagenome / Metatranscriptome
Number of Sequences	121
Average Sequence Length	44 residues
Representative Sequence	VATAPKFRIDVDIHNLLMNSAPGPVRVPAPQGLTLPEPVFPQYPE
Number of Associated Samples	96
Number of Associated Scaffolds	121

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	97.46 %
% of genes near scaffold ends (potentially truncated)	92.56 %
% of genes from short scaffolds (< 2000 bps)	85.12 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (79.339 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.967 % of family members)
Environment Ontology (ENVO)	Unclassified (40.496 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.942 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 13.70% β-sheet: 0.00% Coil/Unstructured: 86.30%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 121 Family Scaffolds
PF09989	DUF2229	23.14
PF13620	CarboxypepD_reg	4.96
PF00587	tRNA-synt_2b	2.48
PF00005	ABC_tran	1.65
PF08281	Sigma70_r4_2	1.65
PF09411	PagL	1.65
PF09594	GT87	0.83
PF00072	Response_reg	0.83
PF00664	ABC_membrane	0.83
PF04073	tRNA_edit	0.83
PF03928	HbpS-like	0.83
PF04055	Radical_SAM	0.83
PF08308	PEGA	0.83
PF00326	Peptidase_S9	0.83
PF07228	SpoIIE	0.83
PF13590	DUF4136	0.83
PF04140	ICMT	0.83
PF01464	SLT	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	79.34 %
Unclassified	root	N/A	20.66 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	79.34 %
Unclassified	root	N/A	20.66 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	79.34 %
Unclassified	root	N/A	20.66 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	58.68 %
Unclassified	root	N/A	20.66 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	41.32 %
Unclassified	root	N/A	20.66 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	10.74 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	40.50 %
Unclassified	root	N/A	20.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.74 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	40.50 %
Unclassified	root	N/A	20.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.74 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	0.83 %

Name	Rank	Taxonomy	Distribution
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	37.19 %
Unclassified	root	N/A	20.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.74 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	0.83 %
Acidobacterium	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium	0.83 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	0.83 %

Name	Rank	Taxonomy	Distribution
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	37.19 %
Unclassified	root	N/A	20.66 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	10.74 %
Acidobacterium ailaaui	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	0.83 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.83 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000789\|JGI1027J11758_11820509	Not Available	507	Open in IMG/M
3300000955\|JGI1027J12803_102539886	All Organisms → cellular organisms → Bacteria	503	Open in IMG/M
3300000955\|JGI1027J12803_105740165	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300001141\|JGI12638J13249_100644	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1182	Open in IMG/M
3300001143\|JGI12687J13287_103026	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	536	Open in IMG/M
3300002245\|JGIcombinedJ26739_100690445	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	899	Open in IMG/M
3300003368\|JGI26340J50214_10027308	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1717	Open in IMG/M
3300005167\|Ga0066672_10016606	Not Available	3747	Open in IMG/M
3300005332\|Ga0066388_100000925	All Organisms → cellular organisms → Bacteria	15392	Open in IMG/M
3300005332\|Ga0066388_104025132	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300005434\|Ga0070709_10401897	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1023	Open in IMG/M
3300005563\|Ga0068855_101747044	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	633	Open in IMG/M
3300005586\|Ga0066691_10512152	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	716	Open in IMG/M
3300005602\|Ga0070762_10317540	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	986	Open in IMG/M
3300005713\|Ga0066905_100324643	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1219	Open in IMG/M
3300005921\|Ga0070766_10085323	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1845	Open in IMG/M
3300005921\|Ga0070766_10158825	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1390	Open in IMG/M
3300006052\|Ga0075029_100273440	All Organisms → cellular organisms → Bacteria	1072	Open in IMG/M
3300006163\|Ga0070715_10036195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2035	Open in IMG/M
3300006163\|Ga0070715_10209200	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	996	Open in IMG/M
3300006176\|Ga0070765_101797584	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	575	Open in IMG/M
3300006806\|Ga0079220_11510054	All Organisms → cellular organisms → Bacteria	577	Open in IMG/M
3300006903\|Ga0075426_10230227	All Organisms → cellular organisms → Bacteria	1347	Open in IMG/M
3300009623\|Ga0116133_1075135	Not Available	846	Open in IMG/M
3300010047\|Ga0126382_11244413	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	669	Open in IMG/M
3300010048\|Ga0126373_10907957	Not Available	945	Open in IMG/M
3300010048\|Ga0126373_11805522	Not Available	675	Open in IMG/M
3300010358\|Ga0126370_11013527	Not Available	759	Open in IMG/M
3300010358\|Ga0126370_12147446	Not Available	549	Open in IMG/M
3300010359\|Ga0126376_10226295	Not Available	1572	Open in IMG/M
3300010360\|Ga0126372_11136874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	802	Open in IMG/M
3300010360\|Ga0126372_12954355	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	527	Open in IMG/M
3300010361\|Ga0126378_10503615	Not Available	1326	Open in IMG/M
3300010362\|Ga0126377_11410136	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	770	Open in IMG/M
3300010376\|Ga0126381_100324519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2118	Open in IMG/M
3300010376\|Ga0126381_100864715	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1300	Open in IMG/M
3300010376\|Ga0126381_104995216	All Organisms → cellular organisms → Bacteria → Acidobacteria	509	Open in IMG/M
3300010397\|Ga0134124_13063481	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300010398\|Ga0126383_11202469	Not Available	848	Open in IMG/M
3300011120\|Ga0150983_11583025	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	594	Open in IMG/M
3300012363\|Ga0137390_11725251	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300012944\|Ga0137410_11827071	All Organisms → cellular organisms → Bacteria	537	Open in IMG/M
3300012971\|Ga0126369_10580356	Not Available	1189	Open in IMG/M
3300012971\|Ga0126369_10830767	All Organisms → cellular organisms → Bacteria	1007	Open in IMG/M
3300012971\|Ga0126369_12054132	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	659	Open in IMG/M
3300012971\|Ga0126369_13544594	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	511	Open in IMG/M
3300015373\|Ga0132257_100675482	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300016387\|Ga0182040_10933891	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	721	Open in IMG/M
3300016387\|Ga0182040_11740834	All Organisms → cellular organisms → Bacteria → Acidobacteria	533	Open in IMG/M
3300017948\|Ga0187847_10012695	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	5481	Open in IMG/M
3300017972\|Ga0187781_11332635	Not Available	530	Open in IMG/M
3300018007\|Ga0187805_10640663	Not Available	503	Open in IMG/M
3300018012\|Ga0187810_10410218	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	570	Open in IMG/M
3300018062\|Ga0187784_11690117	Not Available	501	Open in IMG/M
3300018085\|Ga0187772_10585207	All Organisms → cellular organisms → Bacteria	793	Open in IMG/M
3300018090\|Ga0187770_11793891	Not Available	502	Open in IMG/M
3300020583\|Ga0210401_10198296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1865	Open in IMG/M
3300020583\|Ga0210401_10517689	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1055	Open in IMG/M
3300020583\|Ga0210401_10850768	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	771	Open in IMG/M
3300020583\|Ga0210401_11609036	Not Available	507	Open in IMG/M
3300021170\|Ga0210400_10000524	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	42681	Open in IMG/M
3300021180\|Ga0210396_11012324	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300021180\|Ga0210396_11122405	Not Available	661	Open in IMG/M
3300021384\|Ga0213876_10043921	Not Available	2362	Open in IMG/M
3300021404\|Ga0210389_11033858	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300021405\|Ga0210387_10293603	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1429	Open in IMG/M
3300021406\|Ga0210386_11223149	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	634	Open in IMG/M
3300021420\|Ga0210394_10730068	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	867	Open in IMG/M
3300021420\|Ga0210394_11003001	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300021420\|Ga0210394_11280079	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300021475\|Ga0210392_10741139	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	732	Open in IMG/M
3300022525\|Ga0242656_1136621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	508	Open in IMG/M
3300022709\|Ga0222756_1004884	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1364	Open in IMG/M
3300022716\|Ga0242673_1132345	Not Available	510	Open in IMG/M
3300022717\|Ga0242661_1000038	All Organisms → cellular organisms → Bacteria	6495	Open in IMG/M
3300022724\|Ga0242665_10147589	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	740	Open in IMG/M
3300025916\|Ga0207663_10865084	All Organisms → cellular organisms → Bacteria	722	Open in IMG/M
3300025928\|Ga0207700_10502443	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1073	Open in IMG/M
3300025929\|Ga0207664_11161772	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300025939\|Ga0207665_10858582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	719	Open in IMG/M
3300025939\|Ga0207665_10905482	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	700	Open in IMG/M
3300026309\|Ga0209055_1002698	All Organisms → cellular organisms → Bacteria → Acidobacteria	11074	Open in IMG/M
3300026333\|Ga0209158_1055436	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1605	Open in IMG/M
3300026334\|Ga0209377_1293216	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	540	Open in IMG/M
3300026508\|Ga0257161_1051400	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	833	Open in IMG/M
3300026552\|Ga0209577_10772824	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	538	Open in IMG/M
3300027050\|Ga0209325_1007957	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1159	Open in IMG/M
3300027795\|Ga0209139_10063997	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1289	Open in IMG/M
3300027824\|Ga0209040_10218186	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	977	Open in IMG/M
3300027869\|Ga0209579_10400746	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	744	Open in IMG/M
3300027889\|Ga0209380_10002590	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	11512	Open in IMG/M
3300028906\|Ga0308309_11410395	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	597	Open in IMG/M
3300029636\|Ga0222749_10470553	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300030862\|Ga0265753_1049319	Not Available	743	Open in IMG/M
3300031564\|Ga0318573_10620739	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	582	Open in IMG/M
3300031680\|Ga0318574_10168213	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1251	Open in IMG/M
3300031718\|Ga0307474_10401970	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1066	Open in IMG/M
3300031753\|Ga0307477_10117097	All Organisms → cellular organisms → Bacteria → Acidobacteria	1856	Open in IMG/M
3300031754\|Ga0307475_10096239	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2304	Open in IMG/M
3300031792\|Ga0318529_10460628	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	592	Open in IMG/M
3300031833\|Ga0310917_11035306	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300031910\|Ga0306923_10296684	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidobacterium → Acidobacterium ailaaui	1847	Open in IMG/M
3300031942\|Ga0310916_10061396	Not Available	2910	Open in IMG/M
3300031954\|Ga0306926_10451533	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1583	Open in IMG/M
3300031962\|Ga0307479_11754440	All Organisms → cellular organisms → Bacteria	573	Open in IMG/M
3300031962\|Ga0307479_11878733	All Organisms → cellular organisms → Bacteria → Acidobacteria	549	Open in IMG/M
3300031981\|Ga0318531_10562638	All Organisms → cellular organisms → Bacteria → Acidobacteria	516	Open in IMG/M
3300032055\|Ga0318575_10455572	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	650	Open in IMG/M
3300032076\|Ga0306924_11097871	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	867	Open in IMG/M
3300032180\|Ga0307471_100086831	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2779	Open in IMG/M
3300032180\|Ga0307471_100492644	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1372	Open in IMG/M
3300032180\|Ga0307471_102731229	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300032261\|Ga0306920_100382372	Not Available	2093	Open in IMG/M
3300032783\|Ga0335079_10020061	All Organisms → cellular organisms → Bacteria → Acidobacteria	7662	Open in IMG/M
3300032828\|Ga0335080_10818510	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	961	Open in IMG/M
3300032829\|Ga0335070_10715162	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300032893\|Ga0335069_10317017	All Organisms → cellular organisms → Bacteria	1851	Open in IMG/M
3300032893\|Ga0335069_10468610	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.69%
Host-Associated	Host-Associated	3.31%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	90.08%
Aquatic	Environmental → Aquatic	6.61%
Plants	Host-Associated → Plants	3.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.08%
Freshwater	Environmental → Aquatic → Freshwater	5.79%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.65%
Sediment	Environmental → Aquatic → Sediment	0.83%
Roots	Host-Associated → Plants → Roots	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	64.46%
Loam	Environmental → Terrestrial → Soil → Loam	18.18%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.44%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.79%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.54%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	20.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	11.57%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	7.44%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.44%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.31%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	1.65%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.70%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.44%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.61%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.79%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	4.96%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.96%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	4.13%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	4.13%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.31%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.48%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.48%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	1.65%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.65%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.65%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Plant Roots	Host-Associated → Plants → Roots → Unclassified → Unclassified → Plant Roots	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001141	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M2	Environmental	Open in IMG/M
3300001143	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM3H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300005167	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300009623	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_19_10	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018007	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5	Environmental	Open in IMG/M
3300018012	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_5	Environmental	Open in IMG/M
3300018062	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021384	Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9	Host-Associated	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300022525	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-4-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022709	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022716	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022717	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-11-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026309	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)	Environmental	Open in IMG/M
3300026333	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140 (SPAdes)	Environmental	Open in IMG/M
3300026334	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141 (SPAdes)	Environmental	Open in IMG/M
3300026508	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-01-A	Environmental	Open in IMG/M
3300026552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 (SPAdes)	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032783	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300032893	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.1	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J11758_118205092	3300000789	Soil	MATAPKFRIDVDIHNLLMHSSPEPVKRPVPMGITLPEPIFPQYPAKLADAGAEAP
JGI1027J12803_1025398862	3300000955	Soil	MATAPKFRIDVDIHNLLMNSSREPVRPAAFNGLTLPEPVFPQYPEKL
JGI1027J12803_1057401652	3300000955	Soil	MATAPKFRIDVDIHNLLMNSNPGPVVVPQPKGAILPEPVFPRFPE
JGI12638J13249_1006441	3300001141	Forest Soil	MATAPKFRIDVDIHNLLMNTAQTPAKPVLVKGRKLPDPVFPRFP
JGI12687J13287_1030262	3300001143	Forest Soil	MATAPKFRIDVDIHNLLMNTAQAPAKPALVKGKRLPDPVFPRF
JGIcombinedJ26739_1006904452	3300002245	Forest Soil	MASAPKFRIDIDIHNLLMNSAPGPVAVPPPKGMKLPEPVFPRFP
JGI26340J50214_100273081	3300003368	Bog Forest Soil	VATAPKFRIDVDIHNLLMNSAPGPVRVPAPQGLTLPEPVFPQYPE
Ga0066672_100166062	3300005167	Soil	MATAPKFRIDVDIHNPLVNTAQTPAKPGLVMGRKLPDPVG*
Ga0066388_1000009251	3300005332	Tropical Forest Soil	MASAPKFRIDVDIHNLLMDSSRKPVRPAAVRGMTLPEPVFPRYPEKLTDPGPEIAP
Ga0066388_1040251322	3300005332	Tropical Forest Soil	MATSAPAKFRIDVSIHNLLMNSPTGTSTPPKPKGMTLPEPVFPQHP
Ga0070709_104018972	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MASAPKFRIDVDIHNLLMDSSRQVVKPAAAKGLTLPEPVFPQYPEKL
Ga0070735_100493513	3300005534	Surface Soil	VATAPKFRIDVDIHNLLMNSAGPVPVPSPLGWKLPDPIYPLHPERVNDPGPEVIP
Ga0068855_1017470442	3300005563	Corn Rhizosphere	MATVPKFRIDVDIHNLLMQPAPGPVPVPANGLNLPEPVFPQYPEK
Ga0066691_105121522	3300005586	Soil	MATAPKFRIDVDIHDLLMDSSREPARPAAVKGLTLPEPVFPQYPEKLVDPG
Ga0070762_103175402	3300005602	Soil	MASVPKFRIDVDIHNLLMNSAPGPVVVPPPKGMKLPE
Ga0066905_1003246432	3300005713	Tropical Forest Soil	VATAPKFRIDVDIHNLLMHSAPGPVAVPPPKGLKLPDPVFPRFPEKLAD
Ga0070766_100853231	3300005921	Soil	MATAPKFRIDVDIHDLLMDSSRQTVRPAAVKGLTLPEPVFPQCPDQLVDPGPEI
Ga0070766_101588251	3300005921	Soil	VATAPKFRIDVDIHNLLMHSAPGPVAVPAAKGMKLPDPVFPRFPEKLLDPGP
Ga0075029_1002734402	3300006052	Watersheds	MAVAPKFRIDVDIHNLLMHSAPGPVALPEPRGFSLPE
Ga0070715_100361951	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MASAPKFRIDVDIHNLLMDSSRQVVKPAAAKGLTLPEPVFPQYPEKLA
Ga0070715_102092001	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	VATVPKFRIDVDIHNLLMHSAPGPVAVPAAKGMELPDPVFPRFPEKLLDPGPD
Ga0070765_1017975841	3300006176	Soil	VATAPKFRIDVDIHNLLMNSAPGPVVAPPPKGWKLPDAVYP
Ga0079220_115100542	3300006806	Agricultural Soil	MATAPKFRIDVDIHNLLMNSSREPVRPAAPKGLTLPE
Ga0075426_102302273	3300006903	Populus Rhizosphere	MATAPKFRIDVDIHDLLMHSSPEPVKLPTPMGMTLPEPVF
Ga0116133_10751352	3300009623	Peatland	VATAPKFRIDVDIHNLLMHSAPGPVAVPVARGMKL
Ga0126382_112444131	3300010047	Tropical Forest Soil	VATAPKFRIDIDVHDLLTHSAAGPVAAPAGKGMKLPDPVFPRFPEKLL
Ga0126373_109079572	3300010048	Tropical Forest Soil	MATAPKFRIDVDIHNLLMDSSREPVRPAAVKGMTLPEPLFPQY
Ga0126373_118055221	3300010048	Tropical Forest Soil	MAAAPKFRIDVDIHNLLMDSSREPVRPAAVKGMTLPEPLFPQY
Ga0126370_110135272	3300010358	Tropical Forest Soil	MATAPKFRIDVDIHNLLMHASPEPVKPPAPKGVTLPEPVFP
Ga0126370_121474461	3300010358	Tropical Forest Soil	MATAPKFRIDVDIHNLLMDSSRQPVKPAAAKGLKFPEPVFP
Ga0126376_102262953	3300010359	Tropical Forest Soil	MATAPKFRIDVDIHNLLMHASPEPVKPPAPKGMTLPEPVFPQYP
Ga0126372_111368741	3300010360	Tropical Forest Soil	VATAPKFRIDVDIHNLLMHSPPAPVRVPGGKGAKLPN
Ga0126372_129543551	3300010360	Tropical Forest Soil	MATAPKFRIDVDIHNLLMHSAPGPVPVPAPRGMPLPDP
Ga0126378_103040021	3300010361	Tropical Forest Soil	MAAPQFRIDVDIHNLLMNRGSGPAKPAAHKGMVLPEPI
Ga0126378_105036153	3300010361	Tropical Forest Soil	MATVPKFRIDVDIHNLLMNTASGPAKLPADKAMLLPNPVFP
Ga0126377_114101361	3300010362	Tropical Forest Soil	VATAPKFRIDVDVHNLLMHSAPGPVRVPEGKGAKLPNPVFP
Ga0126381_1003245191	3300010376	Tropical Forest Soil	MATAPKFRIDVDIHTLLMDSSREPVKPVAAKGLTLPEAVFPQYPEKLAE
Ga0126381_1008647152	3300010376	Tropical Forest Soil	VATAPKFRIDVDIHNLLMHSAPGPVALPAAKNLKLPQPVFPRFPEKLADPGP
Ga0126381_1049952162	3300010376	Tropical Forest Soil	VATVPKFRIDVDIHNLLMHSAAGPGALPVPRGMKLPDPVFPRFPKK
Ga0134124_130634812	3300010397	Terrestrial Soil	MATAPKFRIDVDIHNLLMDSSRKPVKAAAARGLTLPE
Ga0126383_112024691	3300010398	Tropical Forest Soil	MATVPKFRIDVDIHNLLMHSSPAPVKIPEPKGLTLPEPVFPQFPDKL
Ga0150983_115830251	3300011120	Forest Soil	MATAPKFRIDVDIHNLLMNTAQTPAKPVLVKGRKL
Ga0137390_117252512	3300012363	Vadose Zone Soil	MATAPKFRIDVDIHYLLMDSSRRPVEPVAAKGLTLPEPVFPQYPEKLADPGPE
Ga0137410_118270712	3300012944	Vadose Zone Soil	MATAPKFRIDVDIHNLLMDSSRQSVQPAAAKGLTLPEPLFPQYPEKL
Ga0126369_105803561	3300012971	Tropical Forest Soil	MATAPKFRIDVDIHNLLMNSNPGPVLVPKPQGATLP
Ga0126369_108307672	3300012971	Tropical Forest Soil	MATAPKFRIDVDIHNLLMHTSPEPVKPPRTKGMSLPEPIFPRFPEKLADPG
Ga0126369_120541321	3300012971	Tropical Forest Soil	MATAPKFRIDVDIHNLLMRSKPDPVLVPKPKGLTLPEPV
Ga0126369_135445942	3300012971	Tropical Forest Soil	MAAAPKFRIDVDIHNLLMHSAQGPVLAPSPQGATLPEPVFPQDPEK
Ga0132257_1006754821	3300015373	Arabidopsis Rhizosphere	MATAPKFRIDVDIHNLLMNSNPGPVLVPKPKGASLPEPVFPRFPEKLADPG
Ga0182040_109338912	3300016387	Soil	VATAPKFRIDVDIHNLLMHSAPGPVAVPAAKGMKLP
Ga0182040_117408342	3300016387	Soil	VATAPKFRIDVDIHNLLMHSAPGPVALPAAKGLKLPDPVFPRYP
Ga0187847_100126956	3300017948	Peatland	MATVPKFRIDVDIHNLLTQVPTGPALVPKSKGMTLPQPVFPQYPE
Ga0187781_113326351	3300017972	Tropical Peatland	MATVPKFRIDVDIHNLLMNTGSGSAKLPADKGMALPDPVFPQYPELLS
Ga0187805_106406631	3300018007	Freshwater Sediment	MATAPKFRIDVDIHNLLMHKAPAPALVPIAKGMKLPEPVFPLFPEKLEDPGPA
Ga0187810_104102182	3300018012	Freshwater Sediment	VATAPKFRIDVDIHNLLMNSAPGPVAVPPPKGKKLPDPVFPRFPEKLRDPG
Ga0187784_116901172	3300018062	Tropical Peatland	MASAPKFRIDVDFHNLLMNTGSGSAKLPADRGMALPDPVFPQ
Ga0187772_105852071	3300018085	Tropical Peatland	MAAAPKFRIDVDIHNLLMSSATAPVALPEPKGLTLPEPVF
Ga0187770_117938911	3300018090	Tropical Peatland	METRGLMSTVPKFRIDVDIHNLLIDSHSRGPVPAAAMGLDLPTPPFPLHP
Ga0210401_101982963	3300020583	Soil	MATTPKFRIDVDIHSLLMDSSRQPVKPPAAKGLTLPEPV
Ga0210401_105176892	3300020583	Soil	MASVPKFRIDVDIHNLLMNSAPGPVVVPPPKGMKLPEPVF
Ga0210401_108507682	3300020583	Soil	MATAPKFRIDVDIHNLLMHSAPEPAKPAAIKGLTLPEPVFPQYPKKL
Ga0210401_116090362	3300020583	Soil	MASAPKFRIDVDIHNLLMNSAPGPVVVPPPMGMKLPEPVFPRFPE
Ga0210404_103325872	3300021088	Soil	MASVPKFRIDVDIHNLLMNSAPGPIMVPPPKGMKLPEPVFPRFPEKLSDPGPAVIP
Ga0210400_1000052432	3300021170	Soil	MATAPKFRIDVDIHNLLMNTAQTPAKPVLVKGRKLP
Ga0210396_110123242	3300021180	Soil	MATAPKFRIDVDIHNLLMDSSRQPVKPAAAKGLTLPEPVFPQYPEK
Ga0210396_111224051	3300021180	Soil	MATAPKFRIDVDIHNLLMHSAPEPAKPAAIKGLTLPEPVLP
Ga0213876_100439211	3300021384	Plant Roots	VATAPKFRIDVDIHNLLMKSAPGPVVVPPPKGWTLPEAEYPLHPERVNDPGP
Ga0210389_110338581	3300021404	Soil	MATAPKFRIDVDIHDLLMDSSREPVRPVTVKGLTLPEPVFPQY
Ga0210387_102936031	3300021405	Soil	VATAPKFRIDVDIHNLLTRSAAGPVVIPAPKGMTLPDPVFPRFPEKL
Ga0210386_112231491	3300021406	Soil	MATAPKFRIDVDIHNLLMHSAPGPVAVPAAKGMKL
Ga0210394_107300682	3300021420	Soil	VATAPKFRIDVDIHNLLMHSAPVAVPAAKGMKLPDPVFPLF
Ga0210394_110030012	3300021420	Soil	MATAPKFRIDVDIHDLLMDSSRQPVRPAAVKGLTLPEPVFPQYPDKLVDPGP
Ga0210394_112800791	3300021420	Soil	MAPRFRTDVDSHNLLMHFAPGPVAVPAVKATKLPDPAFPRFPE
Ga0210392_107411392	3300021475	Soil	MASVPKFRIDVDIHNLLMNSAPGPVAVPPPKGMKL
Ga0242656_11366212	3300022525	Soil	VATVPKFRIDVDIHNLLMNSAPGPVPVPLPKGMTLPEPVFPRFPEKLKDP
Ga0222756_10048841	3300022709	Soil	MASAPKFRIDVDIHNLLMNSAPGPVAVPPPRGMKLPEPVFPRFPEKLSDP
Ga0242673_11323451	3300022716	Soil	MASAPKFRIDVDIHNLLMNSAPGPVAVPPPKGMKL
Ga0242661_10000384	3300022717	Soil	MATAPKFRIDVDIHNLLMNTAQTPAKPVLVKGRKLPEPVFPRFPEKLLD
Ga0242665_101475891	3300022724	Soil	MATAPKFRIDVDIHNLLMNTAQAPAKPALVKGKRLPDPVFPRFPEKLLDP
Ga0207663_108650842	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MATVPKFRIDVDIHNLLMDSSRQPVKPADAKGLTLPEPVFP
Ga0207700_105024432	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MATAPKFRIDVDIHNLLMNSAPGPVLVPKPKGLALPEPV
Ga0207664_111617722	3300025929	Agricultural Soil	MATAPKFRIDVDIHNLLMDSSKRPVRPAAVNGMTPPEPVF
Ga0207665_108585821	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MATAPKFRIDVDVHNLLMQSPEPVRIPAPKGLTLPE
Ga0207665_109054822	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MATAPKFRIDVDIHNLLMNSAPAPVPMPPSKGLILPEP
Ga0209055_10026985	3300026309	Soil	MATAPKFRIDVDIHNPLVNTAQTPAKPGLVMGRKLPDPVG
Ga0209158_10554361	3300026333	Soil	MATAPKFRIDVDIHDLLMDSSREPARPAAVKGLTLPEPVFPQYP
Ga0209377_12932162	3300026334	Soil	MATAPKFRIDVDIHDLLMDSSREPARPAAVKGLTL
Ga0257161_10514001	3300026508	Soil	VATAPKFRIDVDIHNLLMHSARGPIEVPTARGMKLPDPVFPQFPEKLSD
Ga0209577_107728242	3300026552	Soil	MATAPKFRIDVDIHNLLMNTAQIPAKPVLVMGRKLPDPVGKH
Ga0209325_10079572	3300027050	Forest Soil	MASAPKFRIDVDIHNLLMNSAPGPIAVPAPKGMKLPEPVFPRFPEK
Ga0209139_100639972	3300027795	Bog Forest Soil	MATVPKFRIDVDIHSLLMQPSQGPPNIPAPKGLTLPEPVFPR
Ga0209040_102181861	3300027824	Bog Forest Soil	VATAPKFRIDVDIHNLLMNSAPGPVRVPAPKGLTLPEP
Ga0209579_104007462	3300027869	Surface Soil	MASAPKFRIDVDIHNLLMNSAPGPVAVPLPRGMKLPEPVFPRFPEK
Ga0209380_100025908	3300027889	Soil	MASAPKFRIDVDIHNLLMNSAPGPVAVPPPRGMKLPEPVFPRFPEKLSD
Ga0308309_114103952	3300028906	Soil	VATAPKFRIDVDIHNLLMNSAPGPVVAPPPKGWKLPDAVYPQHPERVN
Ga0222749_104705532	3300029636	Soil	MATTPKFRIDVDIHSLLMDSSRQPVKPAAAKGLTLPE
Ga0265753_10493192	3300030862	Soil	MATAPKFRIDVDIHNLLMDSWRKPVKPAVAKGLTLPEPTI
Ga0318573_106207391	3300031564	Soil	VATAPKFRIDVDIHNLLMHSAAGVPAPAPKGMQLPDPVF
Ga0318574_101682131	3300031680	Soil	VATAPKFRIDVDIHNLLMHSAAGVPAPAPKGMKLPDPVFPRFPRKLADPG
Ga0307474_104019701	3300031718	Hardwood Forest Soil	VATAPKFRIDVDIHNLLMKSAPGPVAVPSPLGWKLPEAVYPQHPERVNDPGPEVP
Ga0307477_101170971	3300031753	Hardwood Forest Soil	MATAPKFRIDIDIHNLLMRSGPVEVPKPKGMALPEPVFPR
Ga0307475_100962392	3300031754	Hardwood Forest Soil	MATAPKFRIDVDIHNLLMDSSRQPVKPAAAKGLTLPEPVFPQY
Ga0318529_104606282	3300031792	Soil	MATAPKFRIDVDIHNLLMNTAQAPAKPALVKGKRLPN
Ga0310917_110353062	3300031833	Soil	VATAPKFRIDVDIHNLLMHSAAGVPAPAPKGMQLPDPVFPRFPRKLAD
Ga0306923_102966843	3300031910	Soil	MATAPKFRIDVDIHNLLMHTSPEPVKPPLTKGMSLPEPIFPRFPEKLADPGPDQV
Ga0310916_100613962	3300031942	Soil	MASVPKFRIDVDIHNLLMNSAPGPVVVPPPKGMKLPEPVFPRFPEKLSDP
Ga0306926_104515332	3300031954	Soil	VATAPKFRIDVDIHNLLMRSAPGPVPLPAAKGMRLPDPVFPRFPEKLSDPGPTT
Ga0307479_117544402	3300031962	Hardwood Forest Soil	MATAPKFRIDVDIHNLLMDSSRQPVKPAAAQGLTLPEPVFPQFP
Ga0307479_118787332	3300031962	Hardwood Forest Soil	MASAPKFRIDVDIHNLLMNSAPGPMAVPAPKGMKLPEPVFPRFPEKLSDPGP
Ga0318531_105626382	3300031981	Soil	VATAPKFRIDVDIHNLLMHSAPGPVRVPEGKGAKLPNPVFPRFPQK
Ga0318575_104555721	3300032055	Soil	VATAPKFRIDVDIHNLLMHSAPGPVAVPRPMGKKLPEPVFPRFPEKLLDPG
Ga0306924_110978712	3300032076	Soil	MATAPKFRIDVDIHNLLMNSNPGPVLVPTPKGEILPEPVFPQFPEKLADPGPEK
Ga0307471_1000868311	3300032180	Hardwood Forest Soil	MATTPKFRIDVDIHSLLMDSSRQPVKPAAVKGLTLPEPVFPQYPEKLADPGPEL
Ga0307471_1004926441	3300032180	Hardwood Forest Soil	VATAPKFRIDVDIHNLLMHSAPAPVAVPAAKGMKHPDPVF
Ga0307471_1027312292	3300032180	Hardwood Forest Soil	MATAPKFRIDVDIHNLLMDSSRQPVKPAAAQGLTLPEP
Ga0306920_1003823722	3300032261	Soil	VATAPKFRIDVDIHNLLMHSAPGPVAVPRPMGKKLPEP
Ga0335079_100200613	3300032783	Soil	MATAPRFRIDVDIHNLLMNSNPGLVLVPKPKGSTKGFNSS
Ga0335080_108185101	3300032828	Soil	MTTTPKFRIDVDIHNLLTHAAQAPVKPALVMGKTLPDPVFPRFCEKLLDP
Ga0335070_107151621	3300032829	Soil	MAAAAPKFRIDVDIHNLLMNSAPGPVLVPEPKGFTLPDPVFPQYP
Ga0335069_103170171	3300032893	Soil	MAAAAPKFRIDVDIHNLLMNSAPGPVLVPEPKGFTLPDPV
Ga0335069_104686102	3300032893	Soil	MAAAAPKFRIDVDIHNLLMNSAPGPVLVPEPKGFTLP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072803

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences