Metagenome / Metatranscriptome Family F072907

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F072907
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	40 residues
Representative Sequence	PFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Number of Associated Samples	42
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	99.17 %
% of genes from short scaffolds (< 2000 bps)	82.50 %
Associated GOLD sequencing projects	28
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (57.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh (100.000 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.75% β-sheet: 0.00% Coil/Unstructured: 49.25%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF02397	Bac_transf	15.00
PF00589	Phage_integrase	7.50
PF01370	Epimerase	6.67
PF13727	CoA_binding_3	5.00
PF01041	DegT_DnrJ_EryC1	3.33
PF00535	Glycos_transf_2	3.33
PF03721	UDPG_MGDP_dh_N	3.33
PF00534	Glycos_transf_1	2.50
PF13579	Glyco_trans_4_4	1.67
PF02350	Epimerase_2	1.67
PF13692	Glyco_trans_1_4	1.67
PF11903	ParD_like	1.67
PF02899	Phage_int_SAM_1	1.67
PF00456	Transketolase_N	0.83
PF13561	adh_short_C2	0.83
PF01050	MannoseP_isomer	0.83
PF13439	Glyco_transf_4	0.83
PF16363	GDP_Man_Dehyd	0.83
PF04443	LuxE	0.83
PF00676	E1_dh	0.83
PF02780	Transketolase_C	0.83
PF08241	Methyltransf_11	0.83
PF02706	Wzz	0.83
PF02719	Polysacc_synt_2	0.83
PF14667	Polysacc_synt_C	0.83
PF13419	HAD_2	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2148	Sugar transferase involved in LPS biosynthesis (colanic, teichoic acid)	Cell wall/membrane/envelope biogenesis [M]	15.00
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	3.33
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	3.33
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	3.33
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	3.33
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	3.33
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	3.33
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	3.33
COG1104	Cysteine desulfurase/Cysteine sulfinate desulfinase IscS or related enzyme, NifS family	Amino acid transport and metabolism [E]	3.33
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	3.33
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	3.33
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	3.33
COG0381	UDP-N-acetylglucosamine 2-epimerase	Cell wall/membrane/envelope biogenesis [M]	1.67
COG0451	Nucleoside-diphosphate-sugar epimerase	Cell wall/membrane/envelope biogenesis [M]	1.67
COG0702	Uncharacterized conserved protein YbjT, contains NAD(P)-binding and DUF2867 domains	General function prediction only [R]	1.67
COG0707	UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase	Cell wall/membrane/envelope biogenesis [M]	1.67
COG1086	NDP-sugar epimerase, includes UDP-GlcNAc-inverting 4,6-dehydratase FlaA1 and capsular polysaccharide biosynthesis protein EpsC	Cell wall/membrane/envelope biogenesis [M]	1.67
COG4973	Site-specific recombinase XerC	Replication, recombination and repair [L]	1.67
COG4974	Site-specific recombinase XerD	Replication, recombination and repair [L]	1.67
COG0021	Transketolase	Carbohydrate transport and metabolism [G]	0.83
COG0567	2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes	Energy production and conversion [C]	0.83
COG1071	TPP-dependent pyruvate or acetoin dehydrogenase subunit alpha	Energy production and conversion [C]	0.83
COG1087	UDP-glucose 4-epimerase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1088	dTDP-D-glucose 4,6-dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1089	GDP-D-mannose dehydratase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1091	dTDP-4-dehydrorhamnose reductase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3206	Exopolysaccharide export protein/domain GumC/Wzc1	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3524	Capsule polysaccharide export protein KpsE/RkpR	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3765	LPS O-antigen chain length determinant protein, WzzB/FepE family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3944	Capsular polysaccharide biosynthesis protein YveK	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3959	Transketolase, N-terminal subunit	Carbohydrate transport and metabolism [G]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.50 %
Unclassified	root	N/A	42.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.50 %
Unclassified	root	N/A	42.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	57.50 %
Unclassified	root	N/A	42.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	30.83 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	5.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	17.50 %
Bathymodiolus heckerae thiotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	5.00 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2.50 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	1.67 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Bathymodiolus heckerae thiotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	5.00 %
Oceanospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales	1.67 %
Gammaproteobacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis	1.67 %
Thiotrichales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales	1.67 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1.67 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.83 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %
Pelagibacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Bathymodiolus heckerae thiotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	5.00 %
Candidatus Thioglobus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus	1.67 %
Piscirickettsiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae	1.67 %
Synechococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales	1.67 %
Pelagibacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae	0.83 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.83 %
Alcanivoracaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae	0.83 %
Hahellaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae	0.83 %
Burkholderiales genera incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Bathymodiolus heckerae thiotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	5.00 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → environmental samples	1.67 %
Prochlorococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae	1.67 %
Thiomicrorhabdus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrorhabdus	0.83 %
Sansalvadorimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Sansalvadorimonas	0.83 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.83 %
Ideonella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella	0.83 %
Alcanivorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax	0.83 %
unclassified Piscirickettsiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → unclassified Piscirickettsiaceae	0.83 %
Candidatus Pelagibacter	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Bathymodiolus heckerae thiotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	5.00 %
uncultured Candidatus Thioglobus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → environmental samples → uncultured Candidatus Thioglobus sp.	1.67 %
Prochlorococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus	1.67 %
Piscirickettsiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → unclassified Piscirickettsiaceae → Piscirickettsiaceae bacterium	0.83 %
Pseudomonas cavernicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas cavernicola	0.83 %
unclassified Sansalvadorimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Sansalvadorimonas → unclassified Sansalvadorimonas	0.83 %
unclassified Alcanivorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax	0.83 %
unclassified Candidatus Pelagibacter	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter	0.83 %
Ideonella livida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella livida	0.83 %
Thiomicrorhabdus chilensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrorhabdus → Thiomicrorhabdus chilensis	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.50 %
Bathymodiolus heckerae thiotrophic gill symbiont	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	5.00 %
Prochlorococcus marinus	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1.67 %
uncultured Candidatus Thioglobus sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → environmental samples → uncultured Candidatus Thioglobus sp.	1.67 %
Alcanivorax sp. CY1518	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. CY1518	0.83 %
Candidatus Pelagibacter sp. HTCC7211	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211	0.83 %
Sansalvadorimonas sp. 2012CJ34-2	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Sansalvadorimonas → unclassified Sansalvadorimonas → Sansalvadorimonas sp. 2012CJ34-2	0.83 %
Piscirickettsiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → unclassified Piscirickettsiaceae → Piscirickettsiaceae bacterium	0.83 %
Pseudomonas cavernicola	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas cavernicola	0.83 %
Ideonella livida	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella livida	0.83 %
Thiomicrorhabdus chilensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrorhabdus → Thiomicrorhabdus chilensis	0.83 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300016741\|Ga0182079_1102991	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300016746\|Ga0182055_1472618	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Alcanivoracaceae → Alcanivorax → unclassified Alcanivorax → Alcanivorax sp. CY1518	1196	Open in IMG/M
3300016771\|Ga0182082_1593371	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	698	Open in IMG/M
3300016781\|Ga0182063_1306287	All Organisms → cellular organisms → Bacteria	1479	Open in IMG/M
3300017818\|Ga0181565_10079166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → Pseudomonas cavernicola	2344	Open in IMG/M
3300017818\|Ga0181565_10142688	All Organisms → cellular organisms → Bacteria	1677	Open in IMG/M
3300017818\|Ga0181565_10179209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	1466	Open in IMG/M
3300017818\|Ga0181565_10231959	Not Available	1258	Open in IMG/M
3300017818\|Ga0181565_10261364	All Organisms → cellular organisms → Bacteria	1172	Open in IMG/M
3300017818\|Ga0181565_10268976	All Organisms → cellular organisms → Bacteria → Proteobacteria	1152	Open in IMG/M
3300017818\|Ga0181565_10568662	Not Available	730	Open in IMG/M
3300017818\|Ga0181565_10707058	Not Available	639	Open in IMG/M
3300017818\|Ga0181565_11026581	Not Available	510	Open in IMG/M
3300017949\|Ga0181584_10513454	Not Available	735	Open in IMG/M
3300017949\|Ga0181584_10584241	All Organisms → cellular organisms → Bacteria	678	Open in IMG/M
3300017949\|Ga0181584_10696747	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	607	Open in IMG/M
3300017949\|Ga0181584_10843096	Not Available	540	Open in IMG/M
3300017949\|Ga0181584_10888021	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiales genera incertae sedis → Ideonella → Ideonella livida	523	Open in IMG/M
3300017949\|Ga0181584_10894339	Not Available	521	Open in IMG/M
3300017951\|Ga0181577_10065376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2563	Open in IMG/M
3300017951\|Ga0181577_10291312	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	1062	Open in IMG/M
3300017951\|Ga0181577_10676762	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	630	Open in IMG/M
3300017952\|Ga0181583_10318994	Not Available	984	Open in IMG/M
3300017952\|Ga0181583_10655574	Not Available	627	Open in IMG/M
3300017956\|Ga0181580_10659739	Not Available	669	Open in IMG/M
3300017957\|Ga0181571_10009787	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Pelagibacterales → Pelagibacteraceae → Candidatus Pelagibacter → unclassified Candidatus Pelagibacter → Candidatus Pelagibacter sp. HTCC7211	7104	Open in IMG/M
3300017957\|Ga0181571_10013497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6013	Open in IMG/M
3300017957\|Ga0181571_10021188	All Organisms → cellular organisms → Bacteria	4707	Open in IMG/M
3300017957\|Ga0181571_10353961	All Organisms → cellular organisms → Bacteria → Proteobacteria	917	Open in IMG/M
3300017957\|Ga0181571_10802804	Not Available	558	Open in IMG/M
3300017958\|Ga0181582_10235548	Not Available	1227	Open in IMG/M
3300017962\|Ga0181581_10019612	All Organisms → cellular organisms → Bacteria	5024	Open in IMG/M
3300017962\|Ga0181581_10176522	Not Available	1426	Open in IMG/M
3300017962\|Ga0181581_10867689	Not Available	534	Open in IMG/M
3300017964\|Ga0181589_10041214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3497	Open in IMG/M
3300017964\|Ga0181589_10218768	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	1317	Open in IMG/M
3300017964\|Ga0181589_10230741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → environmental samples → uncultured Candidatus Thioglobus sp.	1275	Open in IMG/M
3300017964\|Ga0181589_10531298	Not Available	756	Open in IMG/M
3300017964\|Ga0181589_10800630	Not Available	584	Open in IMG/M
3300017964\|Ga0181589_10901080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Gammaproteobacteria incertae sedis → Candidatus Thioglobus → environmental samples → uncultured Candidatus Thioglobus sp.	543	Open in IMG/M
3300017968\|Ga0181587_10401278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	906	Open in IMG/M
3300017969\|Ga0181585_10193281	All Organisms → cellular organisms → Bacteria	1463	Open in IMG/M
3300017985\|Ga0181576_10029817	All Organisms → cellular organisms → Bacteria	3762	Open in IMG/M
3300017985\|Ga0181576_10533530	All Organisms → cellular organisms → Bacteria → Proteobacteria	717	Open in IMG/M
3300017985\|Ga0181576_10764184	Not Available	573	Open in IMG/M
3300017985\|Ga0181576_10826198	All Organisms → cellular organisms → Bacteria → Proteobacteria	547	Open in IMG/M
3300017986\|Ga0181569_10011708	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6498	Open in IMG/M
3300017986\|Ga0181569_10014372	All Organisms → cellular organisms → Bacteria → Proteobacteria	5810	Open in IMG/M
3300017986\|Ga0181569_10051327	All Organisms → cellular organisms → Bacteria	2957	Open in IMG/M
3300017986\|Ga0181569_10063901	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → Synechococcales → Prochlorococcaceae → Prochlorococcus → Prochlorococcus marinus	2630	Open in IMG/M
3300017986\|Ga0181569_10140100	All Organisms → cellular organisms → Bacteria	1716	Open in IMG/M
3300017986\|Ga0181569_10286552	Not Available	1143	Open in IMG/M
3300017986\|Ga0181569_10731515	Not Available	653	Open in IMG/M
3300018049\|Ga0181572_10068267	All Organisms → cellular organisms → Bacteria	2349	Open in IMG/M
3300018049\|Ga0181572_10444611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → unclassified Piscirickettsiaceae → Piscirickettsiaceae bacterium	805	Open in IMG/M
3300018049\|Ga0181572_10730454	Not Available	594	Open in IMG/M
3300018049\|Ga0181572_10784929	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	568	Open in IMG/M
3300018418\|Ga0181567_10639564	Not Available	684	Open in IMG/M
3300018421\|Ga0181592_10200471	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Thiotrichales → Piscirickettsiaceae → Thiomicrorhabdus → Thiomicrorhabdus chilensis	1492	Open in IMG/M
3300018421\|Ga0181592_10456735	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	891	Open in IMG/M
3300018421\|Ga0181592_10469529	Not Available	875	Open in IMG/M
3300018421\|Ga0181592_10517932	Not Available	821	Open in IMG/M
3300018421\|Ga0181592_10581227	Not Available	763	Open in IMG/M
3300018424\|Ga0181591_10298956	Not Available	1228	Open in IMG/M
3300018424\|Ga0181591_10556560	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300018424\|Ga0181591_10991963	Not Available	571	Open in IMG/M
3300018426\|Ga0181566_10039817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	3661	Open in IMG/M
3300018426\|Ga0181566_10216164	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1413	Open in IMG/M
3300018426\|Ga0181566_10414484	Not Available	956	Open in IMG/M
3300018426\|Ga0181566_10427092	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300018426\|Ga0181566_10880759	Not Available	607	Open in IMG/M
3300018426\|Ga0181566_11068161	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	542	Open in IMG/M
3300018428\|Ga0181568_10603671	Not Available	865	Open in IMG/M
3300018428\|Ga0181568_10972739	Not Available	647	Open in IMG/M
3300018428\|Ga0181568_11397987	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	520	Open in IMG/M
3300019266\|Ga0182061_1348412	Not Available	621	Open in IMG/M
3300019277\|Ga0182081_1655072	Not Available	515	Open in IMG/M
3300020168\|Ga0181588_10121721	All Organisms → cellular organisms → Bacteria	1329	Open in IMG/M
3300020207\|Ga0181570_10019101	All Organisms → cellular organisms → Bacteria	4338	Open in IMG/M
3300020207\|Ga0181570_10258337	Not Available	892	Open in IMG/M
3300020207\|Ga0181570_10270638	All Organisms → cellular organisms → Bacteria	865	Open in IMG/M
3300020207\|Ga0181570_10327830	Not Available	758	Open in IMG/M
3300020207\|Ga0181570_10395851	Not Available	663	Open in IMG/M
3300020207\|Ga0181570_10519677	Not Available	543	Open in IMG/M
3300022935\|Ga0255780_10397523	Not Available	614	Open in IMG/M
3300022939\|Ga0255754_10120628	All Organisms → cellular organisms → Bacteria	1405	Open in IMG/M
3300022939\|Ga0255754_10324077	Not Available	718	Open in IMG/M
3300022939\|Ga0255754_10457909	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300023081\|Ga0255764_10103295	All Organisms → cellular organisms → Bacteria	1574	Open in IMG/M
3300023081\|Ga0255764_10190062	Not Available	1025	Open in IMG/M
3300023081\|Ga0255764_10371210	Not Available	629	Open in IMG/M
3300023081\|Ga0255764_10497992	All Organisms → cellular organisms → Bacteria	504	Open in IMG/M
3300023084\|Ga0255778_10123238	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300023084\|Ga0255778_10397324	Not Available	596	Open in IMG/M
3300023084\|Ga0255778_10431269	Not Available	559	Open in IMG/M
3300023087\|Ga0255774_10003515	All Organisms → cellular organisms → Bacteria	11495	Open in IMG/M
3300023087\|Ga0255774_10016830	All Organisms → cellular organisms → Bacteria → Proteobacteria	4747	Open in IMG/M
3300023087\|Ga0255774_10118370	All Organisms → cellular organisms → Bacteria → Proteobacteria	1487	Open in IMG/M
3300023087\|Ga0255774_10143506	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1306	Open in IMG/M
3300023087\|Ga0255774_10380872	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	642	Open in IMG/M
3300023087\|Ga0255774_10423753	Not Available	591	Open in IMG/M
3300023105\|Ga0255782_10176556	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Oceanospirillales → Hahellaceae → Sansalvadorimonas → unclassified Sansalvadorimonas → Sansalvadorimonas sp. 2012CJ34-2	1075	Open in IMG/M
3300023110\|Ga0255743_10278561	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	875	Open in IMG/M
3300023115\|Ga0255760_10092658	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	1843	Open in IMG/M
3300023115\|Ga0255760_10113441	Not Available	1602	Open in IMG/M
3300023115\|Ga0255760_10175595	All Organisms → cellular organisms → Bacteria → Proteobacteria	1174	Open in IMG/M
3300023115\|Ga0255760_10306332	Not Available	780	Open in IMG/M
3300023116\|Ga0255751_10249308	Not Available	957	Open in IMG/M
3300023116\|Ga0255751_10434708	Not Available	639	Open in IMG/M
3300023117\|Ga0255757_10292110	All Organisms → cellular organisms → Bacteria → Proteobacteria	800	Open in IMG/M
3300023119\|Ga0255762_10101421	Not Available	1722	Open in IMG/M
3300023119\|Ga0255762_10330376	Not Available	779	Open in IMG/M
3300023119\|Ga0255762_10500467	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → Bathymodiolus heckerae thiotrophic gill symbiont	570	Open in IMG/M
3300023175\|Ga0255777_10063225	All Organisms → cellular organisms → Bacteria → Proteobacteria	2466	Open in IMG/M
3300023175\|Ga0255777_10262639	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	997	Open in IMG/M
3300023175\|Ga0255777_10523842	All Organisms → cellular organisms → Bacteria → Proteobacteria	607	Open in IMG/M
3300023176\|Ga0255772_10039730	All Organisms → cellular organisms → Bacteria → Proteobacteria	3393	Open in IMG/M
3300023176\|Ga0255772_10077877	All Organisms → cellular organisms → Bacteria	2164	Open in IMG/M
3300023180\|Ga0255768_10575555	Not Available	551	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	100.00%

Habitat	Taxonomy	Distribution
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	100.00%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	100.00%

Habitat	Taxonomy	Distribution
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	100.00%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300016741	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071410CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016746	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101401AT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016771	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412BT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016781	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101409CT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017818	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017949	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017951	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101413BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017952	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017957	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017958	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017962	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017964	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017967	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017968	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017969	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071407BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017985	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300017986	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018049	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018418	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101403AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018421	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018424	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018426	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018428	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101404AT metaG (megahit assembly)	Environmental	Open in IMG/M
3300019266	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 101407AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019277	Metatranscriptome of coastal salt marsh microbial communities from the Groves Creek Marsh, Georgia, USA - 071412AT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020168	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409BT metaG (spades assembly)	Environmental	Open in IMG/M
3300020207	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101406AT metaG (spades assembly)	Environmental	Open in IMG/M
3300022935	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405AT metaG	Environmental	Open in IMG/M
3300022939	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101412BT metaG	Environmental	Open in IMG/M
3300023081	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071406AT metaG	Environmental	Open in IMG/M
3300023084	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071405CT metaG	Environmental	Open in IMG/M
3300023087	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101407AT metaG	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300023110	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101405AT metaG	Environmental	Open in IMG/M
3300023115	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071410BT metaG	Environmental	Open in IMG/M
3300023116	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412BT metaG	Environmental	Open in IMG/M
3300023117	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071409AT metaG	Environmental	Open in IMG/M
3300023119	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101401AT metaG	Environmental	Open in IMG/M
3300023175	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101402AT metaG	Environmental	Open in IMG/M
3300023176	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071411BT metaG	Environmental	Open in IMG/M
3300023180	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071412AT metaG	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0182079_11029913	3300016741	Salt Marsh	GPFKDFNAIFEKYDEDKSAIVLINFLRYQQRVKIQSEMIA
Ga0182055_14726181	3300016746	Salt Marsh	PFKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0182082_15933711	3300016771	Salt Marsh	FNAIFEKYDEDKSAIVLINFLRHQQMMKIQLEMIA
Ga0182063_13062871	3300016781	Salt Marsh	PFKDFNAIFEKYDEDKSAIVLINFLRHQQMMKIQLEMIA
Ga0181565_100791661	3300017818	Salt Marsh	KGFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181565_101426881	3300017818	Salt Marsh	SGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0181565_101792091	3300017818	Salt Marsh	IKSGPFKDFNGIFERYDADQSAIILINFLRHQQKVKLKAEMIA
Ga0181565_102319591	3300017818	Salt Marsh	DFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0181565_102613641	3300017818	Salt Marsh	VLIKSGPFKDFNAIVEKYEADQSVIVLINFLRHQQRVKIQSEMIA
Ga0181565_102689763	3300017818	Salt Marsh	GFNAIFEKYDEDKSAIVLINFLRHQQPVKIQSEMIA
Ga0181565_105686622	3300017818	Salt Marsh	FIKSGPFKDFNAIFEKYDEDKSAIVLINFLRHQQMMKIQLEMIA
Ga0181565_107070582	3300017818	Salt Marsh	QEVLIKSGPLKDFNGIFEKYEADQSAIVLINFLRHHQQVKVKLEAIS
Ga0181565_110265811	3300017818	Salt Marsh	FIKSGPFKDFNGIFEKYDADQSAIVLINFLRHQQRVKIQSEMIT
Ga0181584_105134541	3300017949	Salt Marsh	FKGFNGVFEKYEADQSVIVLINFLRHQQRVKIQSKMIA
Ga0181584_105842411	3300017949	Salt Marsh	SGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0181584_106967471	3300017949	Salt Marsh	DEVFIKSGPFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181584_108430961	3300017949	Salt Marsh	EVFIKSGPFKDFNAIFEKYDEDKSAIVIINFLRYQQRVKIQSEMIA
Ga0181584_108880211	3300017949	Salt Marsh	GFNAIFEKYDKDKSAIVLINFVRHQQRVKIQSEMIA
Ga0181584_108943392	3300017949	Salt Marsh	SGPFKDFNAIFEKYDEDKSAIVLINFLRRQQRVKIQSEMIA
Ga0181577_100653767	3300017951	Salt Marsh	VLIKSGPFKDFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181577_102913122	3300017951	Salt Marsh	KSGPFKGFNAIFEKYDKDKSAIVLINFLRHQQWVKIQWEMIA
Ga0181577_106767622	3300017951	Salt Marsh	EEVFIKSGPFKDFNAIVEKYEADQSVIVLINFLRHQQQVKIQSEMIA
Ga0181583_103189943	3300017952	Salt Marsh	IKSGPFKDFNAIFEKYEADQSVIVLINFLRHQQRMKIQLEMIA
Ga0181583_106555742	3300017952	Salt Marsh	KDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIS
Ga0181580_106597392	3300017956	Salt Marsh	IKSGPFKDYNGIFEKYDADQSAIVLINFLRYQQRVKIQSEMIA
Ga0181571_100097879	3300017957	Salt Marsh	FKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKVIA
Ga0181571_100134979	3300017957	Salt Marsh	PFKGFNAIFVKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181571_100211881	3300017957	Salt Marsh	IKSGPFKDFNAIFEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0181571_103539611	3300017957	Salt Marsh	KGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181571_108028041	3300017957	Salt Marsh	FKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0181582_102355483	3300017958	Salt Marsh	FNAIFEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0181581_100196127	3300017962	Salt Marsh	FKDFKGVFDKYDEDNSAIVLINFLRHQQQVKIQSEMIA
Ga0181581_101765222	3300017962	Salt Marsh	FNGVFDKYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0181581_108676891	3300017962	Salt Marsh	DEVVIKSGPFKDFNAIFEKYDANQSATVLINFLRSQQKVNIKLDAIS
Ga0181589_100412146	3300017964	Salt Marsh	PFKDFNAIVEKYEADQSVIVLINFLRHQQRVKIQSEMIV
Ga0181589_102187681	3300017964	Salt Marsh	PFKGFNAIFEKYDVDKSAIVLINFLRHQQRVKIQSEVIA
Ga0181589_102307411	3300017964	Salt Marsh	VFIKSGPFKGFNGVFEKYDKDKSAIILINFLRHQQRVKIQSQMIA
Ga0181589_105312981	3300017964	Salt Marsh	KGEEVFIKSGPFKDFNAIFENYDEDKSAIILINFLRHQQRVKIQLEMIA
Ga0181589_108006302	3300017964	Salt Marsh	LHQKGEEVLIKSGPFKDFNGIFEKYDANKSAIVLINFFRHQQQIKIKAEMIS
Ga0181589_109010801	3300017964	Salt Marsh	KSGPFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181590_103349111	3300017967	Salt Marsh	KGEEVFIKSGPFMDFNVIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181587_104012783	3300017968	Salt Marsh	FKGFNAIFEKYNEDKSAIVLINFLRHQQRVKIQSEMIV
Ga0181585_101932811	3300017969	Salt Marsh	SGPFKDFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181576_100298171	3300017985	Salt Marsh	HQKGEEVFIKSGPFKDFNGVFEKYDVDNSAIVLINFLRNRQQVKIKADMIA
Ga0181576_105335301	3300017985	Salt Marsh	SGPFKDFNGIFENYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0181576_107641842	3300017985	Salt Marsh	LIKSGPLKDFNGIFEKYEADQSAIVLINFLRHHQQVKVKLEAIS
Ga0181576_108261982	3300017985	Salt Marsh	FKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSKMIA
Ga0181569_100117089	3300017986	Salt Marsh	EEVLIKSGPFKDFNAIVEKYEADQSVIVLINFLRCQQRVKIQSEMIA
Ga0181569_100143728	3300017986	Salt Marsh	FKDFNAIFEKYDEDKSAIVLINFLRHQQWVKIQSEMIA
Ga0181569_100513271	3300017986	Salt Marsh	SGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIS
Ga0181569_100639011	3300017986	Salt Marsh	FNAIFEKYDKDKSAIVLINFLRHQQQVKIQSEMIA
Ga0181569_101401001	3300017986	Salt Marsh	FKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181569_102865521	3300017986	Salt Marsh	KDFNGIFEKYDAEKSAIVLINFLRHQQRVKIQSEMIA
Ga0181569_107315153	3300017986	Salt Marsh	GEEVFIKSGPFKDFNGIFEKYEADQSAIVLINFLRHQKRLKIKAEMIA
Ga0181572_100682674	3300018049	Salt Marsh	SGPFKDFNAIVEKYEADQSVIVLINFLRHQQRVKIQSEMIA
Ga0181572_104446111	3300018049	Salt Marsh	FKGFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181572_107304541	3300018049	Salt Marsh	DFNAIVEKYDKDKSVIVLINFLRYQQRVKIQSEMIA
Ga0181572_107849291	3300018049	Salt Marsh	FKDFNAIVEKYEADQSVIVLINFLRHQQQVKIQSEMIA
Ga0181567_106395642	3300018418	Salt Marsh	PFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIHSEMIA
Ga0181592_102004711	3300018421	Salt Marsh	IKSGPFKDFNAIVEKYESDQSVIVLINFLRYQQRVKIQSEMIA
Ga0181592_104567353	3300018421	Salt Marsh	PFKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIRSEMIV
Ga0181592_104695292	3300018421	Salt Marsh	PFKDFNAIFEKYDEDKSAIVLINFLRHQQWVKIQSEMIA
Ga0181592_105179322	3300018421	Salt Marsh	FKGFNGVFDKYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0181592_105812271	3300018421	Salt Marsh	FKGFNAIFEKYDKEKSAIVLINFIRHQQRVKIQSNMIA
Ga0181591_102989561	3300018424	Salt Marsh	KDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0181591_105565601	3300018424	Salt Marsh	FSGVFDSYDANQSANVLINFLRHEQLVKIKADMIA
Ga0181591_109919631	3300018424	Salt Marsh	FKDFNAIFEKYEGDQSVIVLINFLRYRQRVKIQSEMIA
Ga0181566_100398171	3300018426	Salt Marsh	IKSGPFKGFYGIFDKYDTDQSVIVLINFIRHQQRVKIQSEMIT
Ga0181566_102161643	3300018426	Salt Marsh	FNAIFEKYEADQSVVVLINFLRYQQRVKIQSEMIA
Ga0181566_104144841	3300018426	Salt Marsh	PFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKVIA
Ga0181566_104270921	3300018426	Salt Marsh	GPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0181566_108807592	3300018426	Salt Marsh	GEEVFIKSVPFKDFNGIFEKYDTNQSAIVLINFLRNQQRVKIQSDMIA
Ga0181566_110681611	3300018426	Salt Marsh	KDFNAIVEKYEADQSVIVLINFLRHQQQVKIQSEMIA
Ga0181568_106036711	3300018428	Salt Marsh	SGPFKDFNAIFEKYNEDKSAIVLINFLRHQQLVKIQSEMIA
Ga0181568_109727391	3300018428	Salt Marsh	FKSFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181568_113979871	3300018428	Salt Marsh	KDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0182061_13484121	3300019266	Salt Marsh	KSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVQIQSEMIT
Ga0182081_16550721	3300019277	Salt Marsh	FKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKMIA
Ga0181588_101217211	3300020168	Salt Marsh	GPFKSFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181570_100191015	3300020207	Salt Marsh	KSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIS
Ga0181570_102583371	3300020207	Salt Marsh	PFKDFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0181570_102706381	3300020207	Salt Marsh	PFKGFNAIFEKYEADQSVIVLINFLRHQQRVKIQSEMIA
Ga0181570_103278302	3300020207	Salt Marsh	FNAIVEKYDADQSVIVLINFLRHQQRVKIQSEMIA
Ga0181570_103958512	3300020207	Salt Marsh	VFIKSGPFKGFNAIFEKYNEDKSVIVLINFLRHQQQVKIQSEMIA
Ga0181570_105196772	3300020207	Salt Marsh	PFKGFNGIFEKYGADQSAIILINFLRHRQRVKIKAEMIA
Ga0255780_103975231	3300022935	Salt Marsh	EEVFIKSGPFKDFNGVFEKYEADQSAIVLINFLRHQQRVKIQSEMIA
Ga0255754_101206284	3300022939	Salt Marsh	IKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIV
Ga0255754_103240773	3300022939	Salt Marsh	GPFKDFNAIFEKYNEDKSAIVLINFLRHQQLVKIQSEMIA
Ga0255754_104579092	3300022939	Salt Marsh	FKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255764_101032952	3300023081	Salt Marsh	QKGEEVFIKSGPFKDFKGIFEKYEADNAVIVLINFLRHQQRLKIKPDMII
Ga0255764_101900622	3300023081	Salt Marsh	FIKSGPFKDFNGVFDKYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0255764_103712101	3300023081	Salt Marsh	FNAIFEKYDGDKSAIVLINFLRHQQRVKIQTGMIA
Ga0255764_104979921	3300023081	Salt Marsh	EEVLIKSGPFKDFNAIFEKYNKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255778_101232381	3300023084	Salt Marsh	ILIKSGPFKDFNAIFRNYDADQSAIVLINFLRNKLQVRVKLDAIS
Ga0255778_103973242	3300023084	Salt Marsh	FNAIFEKYDKDKSAIVLINFLRHQQMVKIQSEMVA
Ga0255778_104312692	3300023084	Salt Marsh	SGPCKGFNGVFDKYDADQSAIVLINFLRHQQRVKIKAEMIA
Ga0255774_100035151	3300023087	Salt Marsh	IKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIS
Ga0255774_100168307	3300023087	Salt Marsh	FKDFNAIFEKYNEDKSAIVLINFLRHQQLVKIQSEMIA
Ga0255774_101183703	3300023087	Salt Marsh	IKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSEMIA
Ga0255774_101435061	3300023087	Salt Marsh	FIKSGPLKGFNAIFEKYDKDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255774_103808721	3300023087	Salt Marsh	FNAIFEKYDKDKSAIVLINFVRHQQRVKIQSEMIA
Ga0255774_104237531	3300023087	Salt Marsh	GFNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255782_101765561	3300023105	Salt Marsh	IKSGPFKDFNGIFEKYDADKSAIVLINFLRHQQRVKIQSEMIA
Ga0255743_102785613	3300023110	Salt Marsh	VLIKSGPFKDFNAIFEKYDEDKSAIVLINFLRYQQRVKIQSEMIA
Ga0255760_100926581	3300023115	Salt Marsh	GPFKGFNAIFEKYDKGKSAIVLINFLRHQQRVKVQSEMIA
Ga0255760_101134413	3300023115	Salt Marsh	FNAIFEKYDEDKSAIVLINFLRHQQQVKIQPEMIA
Ga0255760_101755951	3300023115	Salt Marsh	LIKSGPFKNFNAIFEKYDVDQSVIVLINFLRHQQRVKIQSEMIA
Ga0255760_103063321	3300023115	Salt Marsh	FKDFNAIFEKYDKDKSAIVLINFLRHQQMVKIQSEMVA
Ga0255751_102493081	3300023116	Salt Marsh	FIKSGPFKGFNGVFEKYDKDKSAIILINFLRHQQRVKIQSQMIA
Ga0255751_104347082	3300023116	Salt Marsh	FKDFNGVFEKYDEDKSVIVLINFLRHQQRVKIQSEMIA
Ga0255757_102921101	3300023117	Salt Marsh	FNGIFENYDADQSAIVLINFLRHQQRVKIQSEMIA
Ga0255762_101014211	3300023119	Salt Marsh	DFNGIFEKYDVDKSAIVLINFLRHHQQVKVKLEAIS
Ga0255762_103303763	3300023119	Salt Marsh	DFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKVIA
Ga0255762_105004672	3300023119	Salt Marsh	FKSFNGIFENYDADQSAIVLVNFLRHQQRVKIKAEMIG
Ga0255777_100632251	3300023175	Salt Marsh	FNAIFEKYDEDKSAIVLINFLRHQQRVKIQSEMIA
Ga0255777_102626391	3300023175	Salt Marsh	FKDFNAIFEKYDEDNSAIVLINFLRHLQRVKIQSEMIA
Ga0255777_105238423	3300023175	Salt Marsh	KSGPFKDFNAIVEKYEADQSVIVLVNFLRYQQRVKIQSEMIA
Ga0255772_100397305	3300023176	Salt Marsh	IKSGPFKDFNAIVEKYEADQSVIVLINFLRYQQRVKIQSKMIA
Ga0255772_100778773	3300023176	Salt Marsh	KSGPFKDFNAIFRNYDADQSAIVLINFLRNKLQVRVKLDAIS
Ga0255768_105755551	3300023180	Salt Marsh	EVFIKSGPFKDFNAIFEKYDADKSVIVLINFLRHQQRVKIQSEMIA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F072907

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences