Metagenome / Metatranscriptome Family F073212

Basic Information
Family ID	F073212
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	79 residues
Representative Sequence	AYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDANDDGTFDIGAKKVYANVSIPCSH
Number of Associated Samples	107
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.28

Most Common Taxonomy
Group	Unclassified (100.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (14.167 % of family members)
Environment Ontology (ENVO)	Unclassified (30.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (43.333 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 18.37% Coil/Unstructured: 81.63%
Feature Viewer

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Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00149	Metallophos	21.67
PF02463	SMC_N	7.50
PF13385	Laminin_G_3	5.83
PF00754	F5_F8_type_C	5.00
PF00535	Glycos_transf_2	4.17
PF07995	GSDH	1.67
PF04138	GtrA	1.67
PF01658	Inos-1-P_synth	0.83
PF08281	Sigma70_r4_2	0.83
PF06470	SMC_hinge	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2133	Glucose/arabinose dehydrogenase, beta-propeller fold	Carbohydrate transport and metabolism [G]	1.67
COG1196	Chromosome segregation ATPase Smc	Cell cycle control, cell division, chromosome partitioning [D]	0.83
COG1260	Myo-inositol-1-phosphate synthase	Lipid transport and metabolism [I]	0.83

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	100.00 %

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	65.83%
Host-Associated	Host-Associated	34.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	54.17%
Plants	Host-Associated → Plants	33.33%
Aquatic	Environmental → Aquatic	11.67%
Human	Host-Associated → Human	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	54.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	12.50%
Sediment	Environmental → Aquatic → Sediment	6.67%
Freshwater	Environmental → Aquatic → Freshwater	4.17%
Marine	Environmental → Aquatic → Marine	0.83%
Digestive System	Host-Associated → Human → Digestive System	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	40.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	6.67%
Sand	Environmental → Terrestrial → Soil → Sand	6.67%
Loam	Environmental → Terrestrial → Soil → Loam	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.83%
Sediment	Environmental → Aquatic → Freshwater → Sediment	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	2.50%
Lake	Environmental → Aquatic → Freshwater → Lake	1.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.67%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	25.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	10.00%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	6.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.67%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	6.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.33%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	2.50%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	1.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	14.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	10.00%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	6.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.00%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.33%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.50%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.50%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	2.50%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.50%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.67%
Natural And Restored Wetlands	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	1.67%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Unplanted Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000041	Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 old rhizosphere	Host-Associated	Open in IMG/M
3300000550	Amended soil microbial communities from Kansas Great Prairies, USA - BrdU amended with acetate total DNA F2.4 TB clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300002099	Soil microbial communities from Manhattan, Kansas, USA - Sample 400um MDA	Environmental	Open in IMG/M
3300003380	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM	Host-Associated	Open in IMG/M
3300003392	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM	Host-Associated	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005331	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG	Host-Associated	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005441	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG	Environmental	Open in IMG/M
3300005457	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG	Host-Associated	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005616	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009157	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015	Environmental	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300009553	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG	Host-Associated	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300009813	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_10_20	Environmental	Open in IMG/M
3300009817	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_10_20	Environmental	Open in IMG/M
3300009822	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_30_40	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012501	Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610	Environmental	Open in IMG/M
3300012892	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1	Environmental	Open in IMG/M
3300012903	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S134-311R-1	Environmental	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012916	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S213-509R-2	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012972	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014265	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2	Environmental	Open in IMG/M
3300014326	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG	Host-Associated	Open in IMG/M
3300015358	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaG	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300017656	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_11112015	Environmental	Open in IMG/M
3300018000	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_5_coex	Environmental	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018053	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_60_b1	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018075	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b1	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019869	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U3m2	Environmental	Open in IMG/M
3300019997	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2	Environmental	Open in IMG/M
3300020003	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2	Environmental	Open in IMG/M
3300021078	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_coex redo	Environmental	Open in IMG/M
3300021412	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2m1	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022737	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5	Environmental	Open in IMG/M
3300022901	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4	Environmental	Open in IMG/M
3300023071	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5	Environmental	Open in IMG/M
3300023072	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S151-409C-6	Environmental	Open in IMG/M
3300023102	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S184-509B-5	Environmental	Open in IMG/M
3300025792	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2 (SPAdes)	Environmental	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300026045	Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2 (SPAdes)	Environmental	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026324	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)	Environmental	Open in IMG/M
3300027032	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30 (SPAdes)	Environmental	Open in IMG/M
3300027462	Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes)	Host-Associated	Open in IMG/M
3300027490	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_0_10 (SPAdes)	Environmental	Open in IMG/M
3300027560	Soil and rhizosphere microbial communities from Laval, Canada - mgLPC (SPAdes)	Environmental	Open in IMG/M
3300027722	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015 (SPAdes)	Environmental	Open in IMG/M
3300027799 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_0_MG	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300027957	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N1_10_20 (SPAdes)	Environmental	Open in IMG/M
3300027995 (restricted)	Sediment microbial communities from Lake Towuti, South Sulawesi, Indonesia - Sediment_Towuti_2014_1_MG	Environmental	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030829	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032012	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D3	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M
3300032421	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NN3	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID	Sample Taxon ID	Habitat	Sequence
ARcpr5oldR_0102932	3300000041	Arabidopsis Rhizosphere	ACPGFNIVINANGFKPNSTVAVKFVGSDSKIPLYTSFDTNSTGGFNDVTFADDLKADHYKLYFGDDANNDGIFDIGTKRVYGNVTVIENTTSQQCEGD*
F24TB_107591981	3300000550	Soil	NANGFKPNSTVAVKFVTSDSKIPLYTQFDTNSTGGFNDVTFADDLKEGHYKLYLGDDANGDGTFDIGAKRIYANVTIPCAK*
JGI11643J11755_117699782	3300000787	Soil	GYFETNSTGGFNDVTFADDLKQDHYKLYFADDVNTDGTFDIGAKRIYSNVTIPCGQ*
JGI11643J12802_123126452	3300000890	Soil	IPLYGYFETNNTGGFNDVTFADDLKEDKYKLYFADDANSDGAFDIGAKRVYANV
JGI24808J26613_10191612	3300002099	Soil	SKIPLYTKFQTNSTGGFSEVTFADDLKEDKYKLYLADDSNDDGAFDIGAKRVYANITIPCP*
JGI26144J50225_1005712	3300003380	Arabidopsis Thaliana Rhizosphere	EPGFNIVINANGFTPNGTVAWKFVGSDSKILXYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDVNTDGTFDIGAKRIYSNVTIPCGQ*
JGI26134J50242_1031461	3300003392	Arabidopsis Thaliana Rhizosphere	SDSKILLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDVNTDGTFDIGAKRIYSNVTIPCGQ*
Ga0063356_1011913951	3300004463	Arabidopsis Thaliana Rhizosphere	TVAYKFVDSNSKIPLYGYFETNQTGGFNDVTFADDLLPGKYKLYFADDANSDGVFDIGAKRIYANISIPCQ*
Ga0062592_1001497711	3300004480	Soil	YGYFETNSTGGFNDVTFADDLKQDHYKLYFADDVNTDGTFDIGAKRIYSNVTIPCGQ*
Ga0062591_1004535551	3300004643	Soil	NGFKPNSIVDVKFVGSDSKIPLYTKFETNSTGGFRDMTFADDLKEGKYKLYLGDDSNDDQVFDIGAKRIYANITIPCP*
Ga0058862_101232541	3300004803	Host-Associated	PGFNMVINANGFAPNSNVNWKLVNSESQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDADNNNKFDLGAPTTYANITIPCT*
Ga0066676_106105751	3300005186	Soil	CPGFNVVINANGFKPNSTVAVKFVTSNSTIPLYTQFDTNSTGGFKEPTFADDLKADHYKVYLGDDSNSDNQFDIGAKKVYANLTVYENATTLQCEKKGEE*
Ga0065705_100002291	3300005294	Switchgrass Rhizosphere	GFNIVINANGFKPNSTVAVKFVTSDSKIPLYTQFDTNSTGGFNDVTFADDLKEGHYKLYLGDDANGDGTFDIGAKRIYANVTIPCAK*
Ga0065707_103715242	3300005295	Switchgrass Rhizosphere	GNDSKIPLYGYFETNNTGGFNDVTFADDLKQDKYKLYFADDANSDGAFDIGAKRVYANVSIPCQ*
Ga0070670_1005457282	3300005331	Switchgrass Rhizosphere	GSDSKIPLYTKFETNSTGGFTEVTFADDLKEDKYKLYLGDDSDGDGAFDIGAKRIYANVTIPCP*
Ga0068869_1007694622	3300005334	Miscanthus Rhizosphere	FNIVINANGFKPKSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKQDHYRLYFADDANDDGTFDIGAKRVYANVSIPCPN*
Ga0068869_1015031701	3300005334	Miscanthus Rhizosphere	KIPLYGYFETNSTGGFNDITFADDLKPDHYKLYFADDADNDNVFDIGSKRIYANVTIPCPK*
Ga0070661_1006633722	3300005344	Corn Rhizosphere	FNIVINANGFKPNSIVDVKFVGSDSKIPLYTKFETNSTGGFRDMTFADDLKEGKYKLYLGDDSNDDQVFDIGAKRIYANITIPCP*
Ga0070659_1013470162	3300005366	Corn Rhizosphere	DSKIPLYGYFETNSTGGFNDVTFADDLKPDKYKLYFGDDANSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSAN*
Ga0070700_1011378081	3300005441	Corn, Switchgrass And Miscanthus Rhizosphere	GPAEPGFNIVINANGFKANSNVAYKFVGSDSKIPLYGYFETNNTGGFNDVTFADDLKEDKYKLYFADDANSDGAFDIGAKKVYANVSIPCQK*
Ga0070662_1003728602	3300005457	Corn Rhizosphere	PLYTKFETNSTGGFRDMTFADDLKEGKYKLYLGDDSNDDQVFDIGAKRIYANITIPCP*
Ga0070698_1002912151	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	WKLVNSKSQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDAGAPTTYANITIPCP*
Ga0070696_1011364282	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	IVINANGFKPKSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDANDDGTFDIGAKKVYANVSIPCSH*
Ga0070664_1009632062	3300005564	Corn Rhizosphere	FNMVINANGFAPDSNVNWKLVNSKSQIPLYGYFQTNSTGGFNDVTFADDLKADNYKMYFGTDANNDNKFDVGAPTTYANITIPCP*
Ga0070664_1010775531	3300005564	Corn Rhizosphere	HEPGFNIVINANGFMPNSTVAYKFVTSDSKIPLYGYFETNSTGGFNDITFADDLKPDHYKLYFADDADNDNVFDIGSKRIYANVTIPCPK*
Ga0070702_1001533481	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	IVDVKFVGSDSKIPLYTKFETNSTGGFRDMTFADDLKEGKYKLYLGDDSNDDQVFDIGAKRIYANITIPCP*
Ga0070702_1010205131	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	QIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDVGAPTTYANITIPCS
Ga0068852_1003103461	3300005616	Corn Rhizosphere	ANGFKGNSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKPDKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTANMSAN*
Ga0068862_1019460311	3300005844	Switchgrass Rhizosphere	PLYTKFETNSTGGFTEVTFADDLKEDKYKLYLGDDSDGDGAFDIGAKRIYANVTIPCP*
Ga0075428_1027112912	3300006844	Populus Rhizosphere	VINANGFKANSNVAYKFVGSDSKIPLYGYFETNNTGGFNDVTFADDLKQDKYKMYFADDANSDGAFDIGAKKVYANVSIPCQK*
Ga0075421_1006625391	3300006845	Populus Rhizosphere	HEPGFNIVMNANGFMPNSTVAYKFVTSESKIPLYGYFETNSTGGFNDVTFADDLKEGNYKLYFGDDANNDNVFDVGAKRIYANVTIPCPQQ*
Ga0075430_1003009651	3300006846	Populus Rhizosphere	KITLYGYFETNSSGGFNDVTFADDLKEDKYKLYFADDANSDGTFDIGAKKIYANVSIPCQQ*
Ga0075430_1016760521	3300006846	Populus Rhizosphere	EPGFNIVINANGFKGNSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKADKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSAS*
Ga0068865_1004977941	3300006881	Miscanthus Rhizosphere	GPAEPGFNIVINANGFKGNSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKADKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSAN*
Ga0075424_1027243852	3300006904	Populus Rhizosphere	CGPADPGFNMVINANGFAPNSNVNWKLVNSKSQIPLYGYFQTNSTGGFNDVTFADDLKADNYKMYFGTDANNDNKFDAGAPTTYANITIPCP*
Ga0075419_110383322	3300006969	Populus Rhizosphere	GFKPNSTVDYKFVDSESKIPLYGYFETNNTGGFNEVTFADDLKDGNYKMYFADDANNDNVFDIGAKRIYANVTIPCPN*
Ga0111539_118604052	3300009094	Populus Rhizosphere	GFKPNSTVAVKFVTSNSTIPLYTQFDTNSTGGFNDVTFADDLKEGHYKLYLGDDANGDGTFDIGAKRIYANITIPCAK*
Ga0105243_115244342	3300009148	Miscanthus Rhizosphere	GFAPNSNVNWKLVNSKSQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDVGASTTYANITIPCS*
Ga0111538_104583432	3300009156	Populus Rhizosphere	EPGFNIVINANGFKPNSTVAYKFVGSDSKITLYGYFETNSSGGFNDVTFADDLKEDKYKLYFADDANSDGAFDIGAKKIYANVSIPCQQ*
Ga0111538_125523812	3300009156	Populus Rhizosphere	PGFNIVINANGFKPNSTVAVKFVGSDSKIPLYTSFDTNSTGGFNDVTFADDLKADHYKLYFGDDANNDGIFDIGTKRVYANVTVIENATSQQCEGD*
Ga0105092_100521941	3300009157	Freshwater Sediment	MNVNGFMPNSTVAYKFVTSESKIPLYGYFETNSTGGFNDVTFADDLKEGNYKLYFADDANNDNVFDIGSKRIYANVTIPCPN*
Ga0105242_103073051	3300009176	Miscanthus Rhizosphere	KLVNSEAQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDVGAPTTYANITIPCH*
Ga0105249_112391561	3300009553	Switchgrass Rhizosphere	TCGPAEPGFNIVINANGFKANSNVAYKFVGSDSKIPLYGYFETNNTGGFNDVTFADDLKEDKYKLYFADDANSDGAFDIGAKKVYANVSIPCQK*
Ga0105065_10000615	3300009803	Groundwater Sand	GVKFVGSDSKIPLYTQFDTNSTGGFNDVTFADDLKADHYKLYLADDSNSDGVFDIGAKRVYANVTIPCEK*
Ga0105084_10489651	3300009811	Groundwater Sand	NGNVAWKFVGSDSKIPLYGYFKTNSTGGFNDVTFADDLKPDHYKMYFADDVNSDGTFDIGAARVYANVTIPCEK*
Ga0105057_10268241	3300009813	Groundwater Sand	DTNNTGGFNDVTFADDLKADHYKLYLADDANSDGIFDVGAKRVYANVTIPCEK*
Ga0105062_10676812	3300009817	Groundwater Sand	KFVDSDSKIPLYGYFATNSTGGFNEVTYADDLKEDHYKMYFADDVNSDGTFDIGAARVYANVTIPCEK*
Ga0105066_10940542	3300009822	Groundwater Sand	PLFGYFETNTTGEFNDVTFADDLKEDHYKLYFADDANNDRAFDIGAKRIYANVTIPCEK*
Ga0134128_103422512	3300010373	Terrestrial Soil	EPGFNIVINANGFKPNSIVDVKFVGSDSKIPLYTKFETNSTGGFRDMTFADDLKEGKYKLYLGDDSNDDQVFDIGAKRIYANITIPCP*
Ga0134127_110496881	3300010399	Terrestrial Soil	TKFETNSTGGFRDMTFADDLKEGKYKLYLGDDSNDDQVFDIGAKRIYANITIPCP*
Ga0134122_107354872	3300010400	Terrestrial Soil	AYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDANDDGTFDIGAKKVYANVSIPCSH*
Ga0134121_113242621	3300010401	Terrestrial Soil	GSDSKIPLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDANDDGTFDIGAKRVYANVSIPCPN*
Ga0134123_119736092	3300010403	Terrestrial Soil	KSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDANDDGTFDIGAKKVYANVSIPCSH*
Ga0105246_106109862	3300011119	Miscanthus Rhizosphere	KLVNSKSQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDAGAPTTYANITIPCP*
Ga0157351_10045301	3300012501	Unplanted Soil	SDSKIPLYTSFDTNNTGGFNDVTFADDLKADHYKLYFGDDANNDGIFDIGTKRVYANVTIIENATLQQCEGG*
Ga0157294_100833621	3300012892	Soil	FNIVINANGFTPNGTVAWKFVGSDSKILLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDVNTDGTFDIGAKRIYSNVTIPCGQ*
Ga0157289_101634772	3300012903	Soil	CGPAEPGFNIVINANGFKGNSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKADKYKLYFGDDANSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSPN*
Ga0157308_100813102	3300012910	Soil	VINANGFKSNSTVAVKFVGSDSKIPLYTKFETNSTGGFTEVTFADDLNEDKYKLYLGDDSDGDGAFDIGAKRIYANVTIPCP*
Ga0157310_101954341	3300012916	Soil	GPAEPGFNIVINANGFKGNSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKADKYKLYFGDDANSDGTFDIGAKRVYANVSIPCEGNQNNPTGNTSADSE*
Ga0164299_113810711	3300012958	Soil	NMVINANGFAPNSNVNWKLVNSESQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDVGAPTTYANITIPCS*
Ga0134077_104787741	3300012972	Grasslands Soil	KPNSTVAVKFVTSNSTIPLYTQFDTNSTGGFNEVTFADDLKADLYKVYLGDDSNGDKQFDLGTKKVYANLTVYENATTLQCEKNGEK*
Ga0164306_111584241	3300012988	Soil	PKVDISPTQGPACPGFNIVINANGFKPNSTVAVKFVGSDSKIPLYTSFDTNSTGGFNDVTFADDLKADHYKLYFGDDANNDGIFDIGTKRVYANVTVIENATSQQCEGD*
Ga0157378_109438161	3300013297	Miscanthus Rhizosphere	AEIPLYGYFQTNITGGFNDVTFADDLKADSYKMYFGTDANNDNKFDAGAPTTYANITIPCP*
Ga0075314_10395821	3300014265	Natural And Restored Wetlands	PHEPGFNIVINANGFIPNSTVAWKFVDSNSKIPLYGYFGTNSTGGFNDVTFADDLREGNYKMYFADDANNDNVFDIGAKRIYANVSIPCPN*
Ga0157380_109813231	3300014326	Switchgrass Rhizosphere	STVAVKFVGSDSKIPLYTSFDTNSTGGFNDVTFADDLKADHYKLYFGDDANNDGIFDIGTKRVYANVTVIENATSQQCEGD*
Ga0134089_102846202	3300015358	Grasslands Soil	NANGFAANSTIGWKLVGSDSKIPLYGYFESNSTGGFNDVTFADDLKEDHYKMYFANDVNNDGTFDIGAARVYANLTLPCEK*
Ga0132256_1009171251	3300015372	Arabidopsis Rhizosphere	VDSHNQIPLYGYFQTNSTGGFNDVTFADDVKSDHYKMVFGTDSNNDNKFDVGTPIAYANVTIPCP*
Ga0132257_1009540401	3300015373	Arabidopsis Rhizosphere	GFNMVINANGFAPNSNVNWKLVNSKSQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDAGAPTTYANITIPCP*
Ga0132255_1023864372	3300015374	Arabidopsis Rhizosphere	CGPAEPGFNIVINANGFKGNSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKPDKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSAN*
Ga0134112_101414292	3300017656	Grasslands Soil	GPADPGFNVVINANGFAANSTIGWKLVGSDSKIPLYGYFESNSTGGFNDVTFADDLKEDHYKMYFANDVNNDGTFDIGAARVYANLTLPCEK
Ga0184604_102243741	3300018000	Groundwater Sediment	AQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDVGAPTTYANITIPC
Ga0184608_104568141	3300018028	Groundwater Sediment	AEPGFNIVINANGFKANSTVGWKFVGSDSKIPLYTQFDSNSTGGFNDVTFADDLKPDHYKLYLGDDTNADGAFDIGTKLVSTNITIPCEK
Ga0184626_100217402	3300018053	Groundwater Sediment	SDSKITLYGYFESNSTGGFNDVTFADDLKEDHYKLYFADDANDDGTFDIGAKRIYANVTIPCENESQTVPSNSSGN
Ga0184626_101433712	3300018053	Groundwater Sediment	MQSVRYLAFISGVFVGSDSKIPLYSNFETNSTGGFNDVTFADDLKADHYKMYFADDANNNGAFDIGAKRVYANVTIRCEK
Ga0184618_101678702	3300018071	Groundwater Sediment	FNIVMNANGFKSKSTVAYKFVGSDSKITLYGYFETNSTGGFNDVTFADDLKDDHYKLYFADDANDDGTFDIGAKRIYANVTIPCENESAAVPSNSSGN
Ga0184635_101167281	3300018072	Groundwater Sediment	TCDPAEPGFNIVISTNGFAPNGTVAWKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKPDHYKMYFADDVNSDGTFDIGAARVYAKVTVPYKQ
Ga0184632_103954551	3300018075	Groundwater Sediment	PLYGYFETNSTGGFNDVTFADYLKPDHYKMYLADDVNSDGTFDIGAARVYTKVTVLCKQ
Ga0190268_108015732	3300018466	Soil	NIVMNVNGFMPNSTVAYKFVTSESKIPLYGYFETNSTGGFNDVTFADDLKEGNYKLYFGDDANNDNVFDVGAKRIYANVTIPCPQQ
Ga0190273_114990722	3300018920	Soil	DSKIPLYGYFDTNSTGGFNDVTFADDLKADKYKLYFGEDDNNDGTFDIGAKRVYANVSIPCEK
Ga0193705_10300201	3300019869	Soil	CGPQDPGFNIVMNANGFKPNSTVAYKFVGSDSKITLYGYFDTNSTGGFNDVTFADDLKEDHYKLYFADDANSDGTFDIGAKRIYANVTIPCENESAAVPSNSSGN
Ga0193711_10063541	3300019997	Soil	GSDSKIPLYTQYDTNNTGGFNDVTFADDLKEDHYKLYFADDANSDGAFDIGAKRVYANVSIPCE
Ga0193739_10578322	3300020003	Soil	MDYSRKLVFSGALFAFAIFGLCGPHEPGFNIVFNANGFTPNGTVAWKFVDSENKIPLYGYYETNSTGGFNDVTFADDLKNGEYKLYFADDVNNDNVFDVGAKRVYANVTIPCPGQL
Ga0210381_101420311	3300021078	Groundwater Sediment	ADPGFNMVLNANGFAPNSNVNWKLVNSEAQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDVGAPTTYANITIPCP
Ga0193736_10230781	3300021412	Soil	DSKIPLYGYFETNSTGGFNDVTFADDLKQDKYKLYFGDDANSDGTFDIGAKRIYANVSIPCGN
Ga0193736_10350882	3300021412	Soil	IPNSTVAYKFVTSESKIPLYGYFETNSTGGFNDVTFADDLKEGNYKLYFGDDANNDNVFDVGAKRIYANVTIPCPQ
Ga0193736_10609191	3300021412	Soil	KANSTVSWKFVTSDNKIPLYGYYETNNTGGFNEVTFADDLKEDNYRLYFADDADSDTVFDIGAKKVYANVTIPCAR
Ga0222623_100597662	3300022694	Groundwater Sediment	VAYKFVGSDSKITLYGYFETNSTGGFNDVTFADDLKEDHYKLYFADDANDDGTFDIGAKRIYANVTIPCENESAAVPSNSSGN
Ga0247747_10028712	3300022737	Soil	YFETNSTGGFNDVTFADDLKQDHYKLYFADDVNTDGTFDIGAKRIYSNVTIPCGQ
Ga0247788_10921272	3300022901	Soil	AEPGFNIVINANGFTPNGTVAWKFVGSDSKILLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDVNTDGTFDIGAKRIYSNVTIPCGQ
Ga0247752_10301872	3300023071	Soil	AYKFVGNDSKIPLYGYFETNSTGGFNDVTFADDLKADKYKLYFGDDANSDGTFDIGAKRVYANVSIPCEGNQNNPTGNTSADSE
Ga0247799_10083761	3300023072	Soil	DSKIPLYTKFETNSTGGFTEVTFADDLKEDKYKLYLGDDSDGDGAFDIGAKRIYANVTIPCP
Ga0247799_10324111	3300023072	Soil	CGPAEPGFNIVINANGFTPNGTVAWKFVGSDSKILLYGYFETNSTGGFNDVTFADDLKQDHYKLYFADDVNTDGTFDIGAKRIYSNVTIPCGQ
Ga0247754_11126921	3300023102	Soil	FKSNSTVAVKFVGSDSKIPLYTKFETNSTGGFTEVTFADDLNEDKYKLYLGDDSDGDGAFDIGAKRIYANVTIPCP
Ga0210143_10098741	3300025792	Natural And Restored Wetlands	SKIPLYGYFETNSTGGFNDVTFADDLKEDNYKLYFADDANNDNVFDIGAKRIYANVTIPCPN
Ga0207707_105839981	3300025912	Corn Rhizosphere	DSKIPLYGYFETNSTGGFNDVTFADDLKPDKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSAN
Ga0208535_10293781	3300026045	Natural And Restored Wetlands	PGFNIVINANGFIPNSTVAWKFVDSNSKIPLYGYFGTNSTGGFNDVTFADDLREGNYKMYFADDANNDNVFDIGAKRIYANVSIPCPN
Ga0207698_107810052	3300026142	Corn Rhizosphere	GSDSKIPLYGYFETNSTGGFNDVTFADDLKPDKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTANMSAN
Ga0209470_11899312	3300026324	Soil	VDVKFVGSDSKIPLFTMFDTNSTGGFNEVTFADDLKADHYKLYLGDDANSDNQFDIGAKKAYANVTVYENATTLQCEKNGEK
Ga0209877_10000618	3300027032	Groundwater Sand	GVKFVGSDSKIPLYTQFDTNSTGGFNDVTFADDLKADHYKLYLADDSNSDGVFDIGAKRVYANVTIPCEK
Ga0210000_10447572	3300027462	Arabidopsis Thaliana Rhizosphere	FAEPKVDISPICGPSEPGFNIVIEANGFKPNNTVDVKFVGSDSKIPLYTKFQTNSTGGFSEVTFADDLKEDKYKLYLADDSNDDGAFDIGAKRIYANITIPCP
Ga0209899_10619023	3300027490	Groundwater Sand	VKFVGSDSKIPLYTQFDTNNTGGFNDVTFADDLKADHYKLYLADDANSDGIFDVGAKRVYANVTIPCEK
Ga0207981_10014562	3300027560	Soil	FNIVINANGFKPNSTVAVKFVTSDSKIPLYTQFDTNSTGGFNDVTFADDLKEGHYKLYLGDDANGDGTFDIGAKRIYANLTIPCAK
Ga0209819_100824242	3300027722	Freshwater Sediment	GFIPNSTVAYKFVTSDSKIPLYGYFETNSTGGFNDVTFADDLKEGNYKLYFADDANNDNVFDIGSKRIYANVTIPCPN
(restricted) Ga0233416_103211852	3300027799	Sediment	VDSNSKIPLYGYFETNSTGGFNDVTFADDLKEGNYKLYFADDTNNDNVFDIGSKRVYANLTIPCPS
Ga0207428_109944121	3300027907	Populus Rhizosphere	KGNSTVAYKFVGSDSKIPLYGYFETNSTGGFNDVTFADDLKADKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSAN
Ga0209382_106753442	3300027909	Populus Rhizosphere	SKILLYGYFETNQTGGFNDVTFADDLRPDKYKLYFADDANSDGVFDIGAKRIYANVSIPC
Ga0209382_112818771	3300027909	Populus Rhizosphere	VAWKFVDSESKIPLYGYYKTNSTGGFNDVTFADDLKNGNYKLYFADDVNNDNVFDIGAKRVFVNVTIPCPVQL
Ga0209857_10612622	3300027957	Groundwater Sand	ANGFKPNSNVGVKFVGSDSKIPLYTQFDTNSTGGFNDVTFADDLKADHYKLYLADDSNSDGIFDIGAKRVYANVTIPCEK
(restricted) Ga0233418_103888832	3300027995	Sediment	ANGFAPNSTVAYKFVDSNSKIPLYGYFETNSTGGFNDVTFADDLKEGNYKLYFADDTNNDNVFDIGSKRVYANLTIPCPS
Ga0268265_105856851	3300028380	Switchgrass Rhizosphere	NVAYKFVGSDSKIPLYGYFETNNTGGFNDVTFADDLKEDKYKMYFADDANSDGAFDIGAKKVYANVSIPCQK
Ga0268265_115075081	3300028380	Switchgrass Rhizosphere	NVVINANGFKSNSTVAVKFVGSDSKIPLYTKFETNSTGGFTEVTFADDLKEDKYKLYLGDDSDGDGAFDIGAKRIYANVTIPCP
Ga0307312_104109571	3300028828	Soil	SDSKIPLYGYFETNSTGGFNDVTFADDLKPDHYKLYFADDVNSDGTFDIGAARVYAKVTVPYKQ
Ga0308203_10886101	3300030829	Soil	QFDSNSTGGFNDVTFADDLKPDHYKLYLGDDTNADGAFDIGTKLVSTNITIPCEK
Ga0310900_106104131	3300031908	Soil	GFNIVINANGFKGNSTVAYKFVGTDSKIPLYGYFETNSTGGFNDVTFADDLKPDKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSAN
Ga0310900_112223991	3300031908	Soil	SEAQIPLYGYFQTNSTGGFNDVTFADDLKADSYKMYFGTDANNDNKFDVDAPTTYANITIPCS
Ga0310902_100965311	3300032012	Soil	FKSNSTVAVKFVGSDSKIPLYTKFETNSTGGFTEVTFADDLKEDKYKLYLGDDSDGDGAFDIGAKRIYANVTIPCP
Ga0310902_109362581	3300032012	Soil	EPGFNIVINANGFKANSNVAYKFVGSDSKIPLYGYFETNNTGGFNDVTFADDLKEDKYKMYFADDTNSDGAFDIGAKKVYANVSIPCQK
Ga0310890_109423161	3300032075	Soil	YKFVGSDSKIPLYGYFETNNTGGFNDVTFADDLKEDKYKMYFADDANSDGAFDIGAKKVYANVSIPCQK
Ga0310895_105781852	3300032122	Soil	DSKIPLYGYFETNSTGGFNDVTFADDLKPDKYKLYFADDVNSDGTFDIGAKRVYANVSIPCEGNQNNQTGNMSAS
Ga0310812_103621261	3300032421	Soil	NGFKPNSTVAVKFVGSDSKIPLYTSFDTNSTGGFNDVTFADDLKADHYKLYFGDDANNDGIFDIGTKRVYANVTVIENATSQQCEGD

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.28
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.28
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073212

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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