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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Family ID | F073293 |
| Family Type | Metagenome / Metatranscriptome |
| Number of Sequences | 120 |
| Average Sequence Length | 44 residues |
| Representative Sequence | LSGGVYLESQEDVARYIRAFALLRAAALSPADSARLLSVLRV |
| Number of Associated Samples | 109 |
| Number of Associated Scaffolds | 120 |
| Quality Assessment | |
|---|---|
| Transcriptomic Evidence | Yes |
| Most common taxonomic group | Unclassified |
| % of genes with valid RBS motifs | 0.00 % |
| % of genes near scaffold ends (potentially truncated) | 15.00 % |
| % of genes from short scaffolds (< 2000 bps) | 13.33 % |
| Associated GOLD sequencing projects | 104 |
| AlphaFold2 3D model prediction | Yes |
| 3D model pTM-score | 0.51 |
| Hidden Markov Model |
|---|
| Powered by Skylign |
| Most Common Taxonomy | |
|---|---|
| Group | Unclassified (94.167 % of family members) |
| NCBI Taxonomy ID | N/A |
| Taxonomy | N/A |
| Most Common Ecosystem | |
|---|---|
| GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.333 % of family members) |
| Environment Ontology (ENVO) | Unclassified (31.667 % of family members) |
| Earth Microbiome Project Ontology (EMPO) | Unclassified (52.500 % of family members) |
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| Predicted Topology & Secondary Structure | |||||
|---|---|---|---|---|---|
| Classification: | Globular | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 42.86% β-sheet: 0.00% Coil/Unstructured: 57.14% | Feature Viewer |
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| Powered by Feature Viewer | |||||
| Structure Viewer | |
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| Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.51 |
| Powered by PDBe Molstar | |
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| Pfam ID | Name | % Frequency in 120 Family Scaffolds |
|---|---|---|
| PF00440 | TetR_N | 6.67 |
| PF00069 | Pkinase | 5.00 |
| PF07690 | MFS_1 | 4.17 |
| PF13672 | PP2C_2 | 0.83 |
| PF00106 | adh_short | 0.83 |
| PF13463 | HTH_27 | 0.83 |
| PF00171 | Aldedh | 0.83 |
| PF11716 | MDMPI_N | 0.83 |
| COG ID | Name | Functional Category | % Frequency in 120 Family Scaffolds |
|---|---|---|---|
| COG0515 | Serine/threonine protein kinase | Signal transduction mechanisms [T] | 20.00 |
| COG0014 | Gamma-glutamyl phosphate reductase | Amino acid transport and metabolism [E] | 0.83 |
| COG1012 | Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase | Lipid transport and metabolism [I] | 0.83 |
| COG4230 | Delta 1-pyrroline-5-carboxylate dehydrogenase | Amino acid transport and metabolism [E] | 0.83 |
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| Name | Rank | Taxonomy | Distribution |
| Unclassified | root | N/A | 94.17 % |
| All Organisms | root | All Organisms | 5.83 % |
| Visualization |
|---|
| Powered by ApexCharts |
| Scaffold | Taxonomy | Length | IMG/M Link |
|---|---|---|---|
| 3300003219|JGI26341J46601_10070255 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces | 1060 | Open in IMG/M |
| 3300004080|Ga0062385_11010533 | Not Available | 559 | Open in IMG/M |
| 3300005435|Ga0070714_101294682 | Not Available | 711 | Open in IMG/M |
| 3300006059|Ga0075017_100115823 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia | 1880 | Open in IMG/M |
| 3300009038|Ga0099829_10547615 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 961 | Open in IMG/M |
| 3300010401|Ga0134121_13119802 | Not Available | 511 | Open in IMG/M |
| 3300017974|Ga0187777_11218849 | Not Available | 551 | Open in IMG/M |
| 3300018085|Ga0187772_10828050 | Not Available | 669 | Open in IMG/M |
| 3300018431|Ga0066655_10620026 | Not Available | 730 | Open in IMG/M |
| 3300026295|Ga0209234_1242764 | Not Available | 589 | Open in IMG/M |
| 3300027047|Ga0208730_1001286 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 2109 | Open in IMG/M |
| 3300027869|Ga0209579_10481994 | Not Available | 673 | Open in IMG/M |
| 3300030525|Ga0210273_1164983 | Not Available | 602 | Open in IMG/M |
| 3300031544|Ga0318534_10061854 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 2110 | Open in IMG/M |
| 3300031778|Ga0318498_10091608 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Treboniaceae → Trebonia → Trebonia kvetii | 1375 | Open in IMG/M |
| 3300032008|Ga0318562_10290586 | Not Available | 950 | Open in IMG/M |
| 3300032783|Ga0335079_11831727 | Not Available | 589 | Open in IMG/M |
| 3300032954|Ga0335083_10510808 | All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | 1004 | Open in IMG/M |
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| Habitat | Taxonomy | Distribution |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 43.33% |
| Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 10.00% |
| Bog Forest Soil | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil | 5.00% |
| Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 4.17% |
| Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 3.33% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 3.33% |
| Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil | 3.33% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 2.50% |
| Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 2.50% |
| Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 2.50% |
| Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 2.50% |
| Tropical Peatland | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland | 2.50% |
| Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 2.50% |
| Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 1.67% |
| Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 1.67% |
| Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.83% |
| Sediment | Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Sediment → Sediment | 0.83% |
| Watersheds | Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds | 0.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 0.83% |
| Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.83% |
| Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 0.83% |
| Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 0.83% |
| Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 0.83% |
| Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 0.83% |
| Agricultural Soil | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil | 0.83% |
| Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.83% |
| Visualization |
|---|
| Powered by ApexCharts |
| Taxon OID | Sample Name | Habitat Type | IMG/M Link |
|---|---|---|---|
| 3300003219 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 | Environmental | Open in IMG/M |
| 3300004080 | Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3 | Environmental | Open in IMG/M |
| 3300004091 | Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3 | Environmental | Open in IMG/M |
| 3300005185 | Soil and rhizosphere microbial communities from Laval, Canada - mgHPB | Environmental | Open in IMG/M |
| 3300005434 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG | Environmental | Open in IMG/M |
| 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Environmental | Open in IMG/M |
| 3300006059 | Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012 | Environmental | Open in IMG/M |
| 3300006800 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109 | Environmental | Open in IMG/M |
| 3300009038 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG | Environmental | Open in IMG/M |
| 3300010379 | Sb_50d combined assembly | Environmental | Open in IMG/M |
| 3300010401 | Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1 | Environmental | Open in IMG/M |
| 3300010880 | Boreal forest soil eukaryotic communities from Alaska, USA - C5-1 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300010937 | Fumarole sediment microbial communities, Furnas, Sao Miguel, Azores. Combined Assembly of Gp0156138, Gp0156139 | Environmental | Open in IMG/M |
| 3300012350 | Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_60_16 metaG | Environmental | Open in IMG/M |
| 3300012361 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG | Environmental | Open in IMG/M |
| 3300014201 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG | Environmental | Open in IMG/M |
| 3300016270 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 | Environmental | Open in IMG/M |
| 3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
| 3300017932 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4 | Environmental | Open in IMG/M |
| 3300017937 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_4 | Environmental | Open in IMG/M |
| 3300017955 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_2 | Environmental | Open in IMG/M |
| 3300017974 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG | Environmental | Open in IMG/M |
| 3300018007 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_5 | Environmental | Open in IMG/M |
| 3300018046 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10 | Environmental | Open in IMG/M |
| 3300018085 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG | Environmental | Open in IMG/M |
| 3300018431 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104 | Environmental | Open in IMG/M |
| 3300018482 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118 | Environmental | Open in IMG/M |
| 3300019260 | Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaT (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300020150 | Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_20_MG | Environmental | Open in IMG/M |
| 3300021088 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M | Environmental | Open in IMG/M |
| 3300021181 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O | Environmental | Open in IMG/M |
| 3300021404 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O | Environmental | Open in IMG/M |
| 3300021407 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O | Environmental | Open in IMG/M |
| 3300021433 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O | Environmental | Open in IMG/M |
| 3300021474 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O | Environmental | Open in IMG/M |
| 3300021475 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O | Environmental | Open in IMG/M |
| 3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
| 3300022513 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O (Metagenome Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300022709 | Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300025906 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) | Environmental | Open in IMG/M |
| 3300026295 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 08_20_2013_1_20cm (SPAdes) | Environmental | Open in IMG/M |
| 3300026498 | Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A | Environmental | Open in IMG/M |
| 3300027047 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF042 (SPAdes) | Environmental | Open in IMG/M |
| 3300027064 | Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF003 (SPAdes) | Environmental | Open in IMG/M |
| 3300027684 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes) | Environmental | Open in IMG/M |
| 3300027824 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes) | Environmental | Open in IMG/M |
| 3300027825 | Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027869 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
| 3300027905 | Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes) | Environmental | Open in IMG/M |
| 3300028781 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E2_3 | Environmental | Open in IMG/M |
| 3300029951 | III_Palsa_N1 coassembly | Environmental | Open in IMG/M |
| 3300029999 | I_Palsa_E3 coassembly | Environmental | Open in IMG/M |
| 3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
| 3300030053 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_2 | Environmental | Open in IMG/M |
| 3300030058 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E3_1 | Environmental | Open in IMG/M |
| 3300030520 | III_Palsa_N2 coassembly | Environmental | Open in IMG/M |
| 3300030524 | II_Palsa_N3 coassembly | Environmental | Open in IMG/M |
| 3300030525 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO143-VCO037SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030586 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO144-ARE041SO (Eukaryote Community Metatranscriptome) (v2) | Environmental | Open in IMG/M |
| 3300030626 | Metatranscriptome of forest soil microbial communities from Boreal Montmorency Forest, Quebec, Canada - FO410-VDE110SO (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030738 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada VDE Co-assembly | Environmental | Open in IMG/M |
| 3300030740 | Forest Soil Metatranscriptomes Boreal Montmorency Forest, Quebec, Canada ARE Co-assembly | Environmental | Open in IMG/M |
| 3300030836 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZU4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030853 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OA8 Emin (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300030934 | Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - OB3 Emin (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031044 | Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSU4 (Metagenome Metatranscriptome) | Environmental | Open in IMG/M |
| 3300031057 | Oak Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031231 | Coassembly Site 11 (all samples) - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031446 | Fir Summer Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031469 | Fir Spring Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
| 3300031525 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3 | Environmental | Open in IMG/M |
| 3300031543 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20 | Environmental | Open in IMG/M |
| 3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
| 3300031546 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23 | Environmental | Open in IMG/M |
| 3300031681 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20 | Environmental | Open in IMG/M |
| 3300031708 | FICUS49499 Metagenome Czech Republic combined assembly | Environmental | Open in IMG/M |
| 3300031736 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21 | Environmental | Open in IMG/M |
| 3300031765 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 | Environmental | Open in IMG/M |
| 3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
| 3300031778 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24 | Environmental | Open in IMG/M |
| 3300031782 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20 | Environmental | Open in IMG/M |
| 3300031792 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23 | Environmental | Open in IMG/M |
| 3300031793 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21 | Environmental | Open in IMG/M |
| 3300031805 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23 | Environmental | Open in IMG/M |
| 3300031819 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21 | Environmental | Open in IMG/M |
| 3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
| 3300031835 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21 | Environmental | Open in IMG/M |
| 3300031846 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19 | Environmental | Open in IMG/M |
| 3300031879 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2) | Environmental | Open in IMG/M |
| 3300031946 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172 | Environmental | Open in IMG/M |
| 3300031947 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H | Environmental | Open in IMG/M |
| 3300032008 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f18 | Environmental | Open in IMG/M |
| 3300032039 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21 | Environmental | Open in IMG/M |
| 3300032042 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26 | Environmental | Open in IMG/M |
| 3300032043 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24 | Environmental | Open in IMG/M |
| 3300032054 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23 | Environmental | Open in IMG/M |
| 3300032060 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18 | Environmental | Open in IMG/M |
| 3300032065 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20 | Environmental | Open in IMG/M |
| 3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
| 3300032067 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 | Environmental | Open in IMG/M |
| 3300032068 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21 | Environmental | Open in IMG/M |
| 3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
| 3300032756 | Forest Soil Metatranscriptomics Site 2 Humus Litter Mineral Combined Assembly | Environmental | Open in IMG/M |
| 3300032783 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.3 | Environmental | Open in IMG/M |
| 3300032898 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_2.1 | Environmental | Open in IMG/M |
| 3300032954 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2 | Environmental | Open in IMG/M |
| 3300033158 | Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1 | Environmental | Open in IMG/M |
| 3300033289 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108 | Environmental | Open in IMG/M |
| Geographical Distribution | |
|---|---|
| Zoom: | Powered by OpenStreetMap |
| ⦗Top⦘ |
| Protein ID | Sample Taxon ID | Habitat | Sequence |
| JGI26341J46601_100702551 | 3300003219 | Bog Forest Soil | LEALSGGVYLESQEDVARYIRAFALLRSAALSAADSMRLLSGLSA* |
| Ga0062385_110105331 | 3300004080 | Bog Forest Soil | GGVYLESQEDVARYIRAFALLRAAALSAADSLRLLSCLSV* |
| Ga0062387_1016876681 | 3300004091 | Bog Forest Soil | EALSGGVYLESQADVARYIRAFALLRASALSPADSVLLLRGLGGL* |
| Ga0066811_10279911 | 3300005185 | Soil | GGVYLESQEDVARYIRAFALLRAAALSAADSARLLSTYGS* |
| Ga0070709_112699423 | 3300005434 | Corn, Switchgrass And Miscanthus Rhizosphere | YLEGLSGGVYLEGQTDIANYVRAFTLLRSSALTVTETARMLRETAR* |
| Ga0070714_1012946822 | 3300005435 | Agricultural Soil | VYLEALSGGVYLESQEDVARYIRAFALLRSAALSPAESVRLLGTLGTAGRRT* |
| Ga0075017_1001158231 | 3300006059 | Watersheds | ALSGGVYLESQEDVARYIRAFALLRAAALSAADSMRLLSGLSV* |
| Ga0066660_111868891 | 3300006800 | Soil | PSLGVVRLDALSGGVYLDSQEHLARYMRAFVLLRASALSVADTARLLRGLST* |
| Ga0099829_105476153 | 3300009038 | Vadose Zone Soil | SGGVYLESQEDLARYIRAFSLLRASALSAADSARLLSGLRV* |
| Ga0136449_1002450571 | 3300010379 | Peatlands Soil | ALSGGVYLESQEDVARYIRAFALLRAAALSAADSMRLLSGLGV* |
| Ga0134121_131198022 | 3300010401 | Terrestrial Soil | PDAPSLGVVYLEALSGGVYLESQQDVARYIRAFALLREAALSTADSARLLSTYGVKGPTEPRA* |
| Ga0126350_113464291 | 3300010880 | Boreal Forest Soil | LEALSGGVYLESQADVARYIRAFALLRASALSAGDSAHLLRGLVA* |
| Ga0137776_11946473 | 3300010937 | Sediment | LSGGVYLESQEDVARYIRAFALLRAAALSAVDSARLLSNLGIQGA* |
| Ga0137372_107340662 | 3300012350 | Vadose Zone Soil | YLESQEDVARYIRAFALLRAAALSAADSARLLSGLRG* |
| Ga0137360_110320322 | 3300012361 | Vadose Zone Soil | GVVYLEALSGGVYLESQADVARYIRAFALLRASALSAADSARLLRGLIP* |
| Ga0181537_100600962 | 3300014201 | Bog | GVYLESQADVARYIRAFALLRASALSAADSVRLLRELAGLA* |
| Ga0182036_108977132 | 3300016270 | Soil | YLESQSDVARYIRAFALLGASALSPRDSTRLLRRLAA |
| Ga0182035_106979132 | 3300016341 | Soil | ESQADVARYIRAFTLLRASALSPGASDRLLRSLAR |
| Ga0182035_110326961 | 3300016341 | Soil | LGVVYLEALSGGVYLESQEDVARYIRAFALLRAAALNAADSARLLSALRF |
| Ga0187814_100539353 | 3300017932 | Freshwater Sediment | ESPAAVARYVRAFALLRASALSPAGSDRMLRSLAR |
| Ga0187809_104057811 | 3300017937 | Freshwater Sediment | VYLESQADVARYVRAFALLRASALSLADSDRLLRSLAR |
| Ga0187817_106506403 | 3300017955 | Freshwater Sediment | ESQTDVVRHIRAFALLRAAALSPADSARLLRGLAA |
| Ga0187777_112188492 | 3300017974 | Tropical Peatland | EALSGGVYLESQSDVARYVRAFALLRAAALSPGDSARLLRRLAA |
| Ga0187805_103983372 | 3300018007 | Freshwater Sediment | ALSGGVYLEDQTDVARYIRAFALLRAAALSPADSVHLLRNLSP |
| Ga0187851_101513103 | 3300018046 | Peatland | LEALSGGVYLESQEDVTRYIRAFALLRSAALSPAESTKLLGTLPTSTGAN |
| Ga0187772_108280501 | 3300018085 | Tropical Peatland | GVYLESQSDVARYVRAFGLLRAAALSPAGSARLLRGLAA |
| Ga0066655_106200261 | 3300018431 | Grasslands Soil | FPEAPSLGVVYLEALSGGVYLESQQDVARYIRAFALLRGAALSTADSARLLSTYGAKGLG |
| Ga0066669_104206621 | 3300018482 | Grasslands Soil | YLESQEDVARYIRAFALLRAAALSAADSARLLSGLQI |
| Ga0181506_12732782 | 3300019260 | Peatland | YLESQQDVARYIRAFALLRSSALTTAESSRLFREMSGC |
| Ga0187768_10019346 | 3300020150 | Tropical Peatland | QADVARYVRAFALLRAAALSPADSAHLLRSMATTSGPAAG |
| Ga0210404_105042861 | 3300021088 | Soil | GVYLEGQADVARYIRAFALLRAAALSPADSARLLRDLAA |
| Ga0210388_110618971 | 3300021181 | Soil | GGVYLEGQEDVARYIRAFALLRAAALSAADSMRLLSGHSV |
| Ga0210389_100777651 | 3300021404 | Soil | LEALSGGVYLESQADVASYVRAFALLRASALTEVDTARLLREKVS |
| Ga0210383_110471121 | 3300021407 | Soil | ESQEDVARYIRAFALLRAAALSPADSMRLLSGHSV |
| Ga0210391_108716071 | 3300021433 | Soil | YLESQEDVARYIRAFALLRAAALSPADSMRLLSGHSV |
| Ga0210390_112568531 | 3300021474 | Soil | SGGVYLESQEDVACYSRAFALLRAAALSPADSMRLLSGHSV |
| Ga0210392_102688341 | 3300021475 | Soil | ALSGGVYLESQEDVARYIRAFALVRAAALSAAESARLLSGLRI |
| Ga0210409_102259291 | 3300021559 | Soil | GGVYLESQEDVARYIRAFALVRAAALSAAESARLLSGLRI |
| Ga0242667_10415992 | 3300022513 | Soil | YLESQQDVARYIRAFALLRSSALSMAETARLLGEMAVAS |
| Ga0222756_10693101 | 3300022709 | Soil | GVYLESQQDVARYIRAFALLRSSALSTAETARLLGEMAVAS |
| Ga0207699_104200043 | 3300025906 | Corn, Switchgrass And Miscanthus Rhizosphere | VYLEALSGGVYLESQEDVARYTRAFALLRAAALSAADSARLLSGLGIQGSPCSGASGQRA |
| Ga0209234_12427641 | 3300026295 | Grasslands Soil | LESQEDVARYIRAFALLRAAALSAADSARLLSGLQI |
| Ga0257156_10980722 | 3300026498 | Soil | PSLGVVYLEALPGGVYLESQQDVARYIRAFALLRAAALSAADSARLLSTYGSKGPSV |
| Ga0208730_10012864 | 3300027047 | Forest Soil | LEGQAEVARYIRAFALLRAAALSPADSVRLLQDLAT |
| Ga0208724_10138261 | 3300027064 | Forest Soil | GVYLESQADVARYIRAFALLRAAALSPADSTRLLGDLAT |
| Ga0209626_12180321 | 3300027684 | Forest Soil | PDAPSLGVVYLEALSGGVYLESQQDVARYIRAFALLRRAALSTADSARLLSTYGAKGLSV |
| Ga0209040_100066879 | 3300027824 | Bog Forest Soil | SLGVVYLEALSGGVYLESQEDVARYIRAFALLRSAALSAADTMRLLSGLSA |
| Ga0209039_100019571 | 3300027825 | Bog Forest Soil | PSLGVVYLEALSGGVYLESQEDVARYIRAFALLRSAALSAADSMRLLSGLSA |
| Ga0209039_103613642 | 3300027825 | Bog Forest Soil | GVYLESQEDVARYIRAFALLRAAALSAADSMRLLSGLSA |
| Ga0209274_100607643 | 3300027853 | Soil | ALSGGIYLESQEEVARYVRAFALLRAGALSPAESARLLRNLTG |
| Ga0209579_104819941 | 3300027869 | Surface Soil | SGGVYLENQADVARYVRAFALLRAAALSPGDSTRLLQDLAT |
| Ga0209415_107798572 | 3300027905 | Peatlands Soil | GGVYLESQDDVARYIRAFALLRASALGAADSVSLLRGLIQAG |
| Ga0302223_100707491 | 3300028781 | Palsa | GGVYLESQADVARYIRAFALLRASALSAADSVRLLRDLGGL |
| Ga0302223_102437232 | 3300028781 | Palsa | LGVVYVEALSGGVYLESQTDVARYIRAFALLRASALSAADSVRLLRGLGGLA |
| Ga0311371_110353961 | 3300029951 | Palsa | EALSGGVYLESQADVARYIRAFALLRASALSAADSVRLLRDLGGL |
| Ga0311339_106209542 | 3300029999 | Palsa | YVEALSGGVYLESQADVARYIRAFALLRASALSAADSARLLRSLGGLA |
| Ga0311338_102571792 | 3300030007 | Palsa | GVYLESQADVARYIRAFALLRASALSAADSVLLLRGLGGL |
| Ga0311338_116204921 | 3300030007 | Palsa | GIYLESQADVARYIRAFALLRASALSPADSRQLLRRLAG |
| Ga0302177_106553942 | 3300030053 | Palsa | ESQADVARYIRAFALLRASALSAADSVRLLRDLGGL |
| Ga0302177_107247331 | 3300030053 | Palsa | GVYLESQADVARYIRAFALLRASALSAADSVRLLRGLGGL |
| Ga0302179_101307801 | 3300030058 | Palsa | VEALSGGVYLESQADVARYIRAFALLRASALSVADSVRLLRDLGGLA |
| Ga0311372_100823105 | 3300030520 | Palsa | SQADVARYIRAFALLRASALSAADSVRLLRDLGGL |
| Ga0311357_112600361 | 3300030524 | Palsa | ESQADVARYIRAFALLRASALSAADSVRLLRGLGGL |
| Ga0210273_11649831 | 3300030525 | Soil | LEAPSGGIYLENQADVARYIRAFALLRAAALSPADSAHLLRGLLA |
| Ga0265393_11839032 | 3300030586 | Soil | VYLETQADVTRYIRAFALLRAAALSPADSARLLRDLAT |
| Ga0210291_120038382 | 3300030626 | Soil | LGIVYLEALTGGVYLESQQDVARYIRAFALLRSSALSTAETARLLGEMAAS |
| Ga0265462_121942101 | 3300030738 | Soil | PSLGVVYLEALSGGVYLEGQEGAGRYVGAFALVRAAALSPAESARLLRNLTG |
| Ga0265460_125865782 | 3300030740 | Soil | VYLESQADVARYIRAFALLRAAALSPADSARLLRDLAT |
| Ga0265767_1154082 | 3300030836 | Soil | GMYLESQQDVARYIRAFALLSSSALTVAESSRLLGEMSGC |
| Ga0075372_107291341 | 3300030853 | Soil | ALSGGVYLESQVDVANYIRAFALLRAAALTTRETAGRLSELAG |
| Ga0075391_101335801 | 3300030934 | Soil | GVYLESQVDVANYIRAFALLRAAALTTRETAGLLSELAG |
| Ga0265747_1103541 | 3300031044 | Soil | VVYLEALTGGMYLESQQDVARYIRAFALLSSSALTVAESSRLLGEMSGC |
| Ga0170834_1127251573 | 3300031057 | Forest Soil | APSLGVVYLEALSGGVYLESQVDVANYIRAFALLRAAALTTRETAGLLSELAG |
| Ga0170824_1208966191 | 3300031231 | Forest Soil | PASLAIVRFPDAPSLGVVYLEALSGGVYLESQVDVANYIRAFALLRAAALTTRETAGRLSELAG |
| Ga0170820_102414551 | 3300031446 | Forest Soil | VRFPDAPSLGVVYLEALSGGVYLESQVDVANYIRAFALLRAAALTTRETAGRLSELAG |
| Ga0170819_171288921 | 3300031469 | Forest Soil | IFVFRHYLESQVDVANYIRAFALLRAAALTTRETAGRLSELAG |
| Ga0302326_116868592 | 3300031525 | Palsa | GGASLEGRDALARYGHAFALLRAAALSPADSGQLLRDMAAALPRA |
| Ga0318516_107766812 | 3300031543 | Soil | SGGVYLESQSDVARYIRAFALLGASALSPRDSTRLLRRLAA |
| Ga0318534_100236745 | 3300031544 | Soil | VYLESQDDVARYLRAFALLRVAALSPADSDRMLRGLAR |
| Ga0318534_100618541 | 3300031544 | Soil | SGGVYLESPSDVARYIRAFALLRAAALSPGDSVRLLQRLAA |
| Ga0318538_102600031 | 3300031546 | Soil | LGVVYLDAPSGGVSVESQADVARYIRAFTLLRASALSPGASDRLLRSLAR |
| Ga0318572_102912761 | 3300031681 | Soil | RTDVTGGVYLDSPEDVARYVRAFTLLRAAALSASDSARLLSGLRV |
| Ga0310686_1166734283 | 3300031708 | Soil | VYLESQADVARYVRAFALLRASALSPAASVRLLRDLIP |
| Ga0318501_104054372 | 3300031736 | Soil | EALSGGVYLESQEDVDRYIRAFALLRAAALSPADSARLLSVLRV |
| Ga0318554_104702871 | 3300031765 | Soil | QEDVARYIRAFALLRAAALSAADSAQLLSNLRIQGT |
| Ga0318546_102440683 | 3300031771 | Soil | VYLEALSGGVYLERQEDIARYIRAFALLRAAALSAAESATWLTGLLV |
| Ga0318498_100916081 | 3300031778 | Soil | LSGGVYLESQEDVARYIRAFALLRAAALSPADSARLLSVLRV |
| Ga0318552_104551512 | 3300031782 | Soil | LEALTGGVYLDSPEDVARYVRAFTLLRAAALSASDSARLLSGLRV |
| Ga0318529_100118345 | 3300031792 | Soil | LSGGVYLESQSDVARYIRAFALLGAAALSPCDSTRLLRRLAA |
| Ga0318548_101416891 | 3300031793 | Soil | EALSGGVYLESQSDVARYIRAFVLLGAAALSPRESTRLLRRLAA |
| Ga0318497_103738001 | 3300031805 | Soil | SGGVYLESQEDVARYIRAFALLRAAALSAADSAQLLSNLRIQGT |
| Ga0318568_108014011 | 3300031819 | Soil | VYLEALSGGVYLESQEDVARYIRAFALLRAAALSAADSARLLSNLPIRGA |
| Ga0307478_116841461 | 3300031823 | Hardwood Forest Soil | VYLESQSDVARYIRAFALLRAAALSPAASARLLRSRTP |
| Ga0318517_100267891 | 3300031835 | Soil | EDVARYIRAFALLRAAALSAADSAQLLSNLRIQGT |
| Ga0318512_106975911 | 3300031846 | Soil | DVTGGVYLDSPEDVARYVRAFTLLRAAALSASDSARLLSGLRV |
| Ga0306919_115295551 | 3300031879 | Soil | PDAPSLGVVYLEALSGGVYLESQEDVARYIRAFALLRSAALSAAESARWLSGLRV |
| Ga0310910_104685381 | 3300031946 | Soil | LESQEDVARYIRAFALLRAAALSAADSAQLLSNLRIQGT |
| Ga0310909_105963492 | 3300031947 | Soil | SLGVVYLDAPSGGVSVESQADVARYIRAFTLLRASALSPGASDRLLRSLAR |
| Ga0318562_102905861 | 3300032008 | Soil | VYLEALSGGVYLESQEDVARYIRAFALLRAAALSAADSARLLANVRIQGDLRI |
| Ga0318562_104343381 | 3300032008 | Soil | LGVVYLEALSGGVYLESQEDVARYIRAFALLRSAALSAAESARWLSGLRV |
| Ga0318559_101057393 | 3300032039 | Soil | YLESPSDVARYIRAFALLRAAALSPGDSVRLLQRLAA |
| Ga0318559_103141271 | 3300032039 | Soil | VYLESQDDVTRYLRAFALLRVAALSPADSDRMLRGLAR |
| Ga0318545_101687322 | 3300032042 | Soil | RSGGVYLESQSDVARYIRAFALLGAAALSPCDSTRLLRRLAA |
| Ga0318556_104907591 | 3300032043 | Soil | LSGGVYLESPSDVARYIRAFTLLRAAALNPADSARLLRRLAA |
| Ga0318556_105972351 | 3300032043 | Soil | VYLESQSDVTRYIRGFALLRAAALSPGDSGRLLRRLAA |
| Ga0318570_102866991 | 3300032054 | Soil | YLESQDDVARYLRAFALLRVAALSPADSDRMLRGLAR |
| Ga0318505_102797062 | 3300032060 | Soil | PDAPSLGVVYLEALSGGVYLESQEDVARYIRAFALLRAAALNAADSARLLSALRF |
| Ga0318513_101819401 | 3300032065 | Soil | GVYLESQEDVARYIRAFALLRAAALSAADSARLLSNLPIRGA |
| Ga0318513_101993683 | 3300032065 | Soil | LEALSGGVYLESQEDVARYIRAFALLRAAALSAADSAQLLSNLRIQGT |
| Ga0318514_104440941 | 3300032066 | Soil | RFPDSPSLGVVYLDAPSGGVSVESQADVARYIRAFTLLRASALSPGASDRLLRSLAR |
| Ga0318524_107196001 | 3300032067 | Soil | GVVYLEALSGGVYLESQEDVARYIRAFALLRAAALNAADSARLLSALRF |
| Ga0318553_102755881 | 3300032068 | Soil | GGVYLESQEDVARYIRAFALLRAAALSAADSAQLLSNLRIQGT |
| Ga0311301_120013402 | 3300032160 | Peatlands Soil | YLEGQEDVARYIRAFALLRAAALSAADSMRLLSGLSV |
| Ga0315742_130725441 | 3300032756 | Forest Soil | LEALSGGVYLENQADVAQYIRAFAMLQASALTTTETARLLREVAQG |
| Ga0335079_118317271 | 3300032783 | Soil | EALSGGVYLESQEDVARYIRAFALLRAAALSAADSARLLSNLWIPGA |
| Ga0335072_112161752 | 3300032898 | Soil | SLDGPDALARYDRAFALLRAAALSPADSAALLRDMAAALPRT |
| Ga0335083_105108083 | 3300032954 | Soil | GGVYLESQEDVARYIRAFALLRTAALSAADSARLLSNLGFQGA |
| Ga0335077_105689693 | 3300033158 | Soil | VRLEALSGGVYLDRPEDVARHIRAFTLLRAAALSASDSARLLSGLRV |
| Ga0310914_105434281 | 3300033289 | Soil | VSGGVYLESQDDVTRYLRAFALLRVAALSPADSDRMLRGLAR |
| Ga0310914_107021781 | 3300033289 | Soil | FPDSPSLGVVYLDAPSGGVSVESQADVARYIRAFTLLRASALSPGASDRLLRSLAR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |