Metagenome Family F073302

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073302
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	51 residues
Representative Sequence	MKTILMLIVGLMLAGCGSMENHVRNHGVASTSRPPLPDPGDTIAVDTICACP
Number of Associated Samples	89
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	50.00 %
% of genes from short scaffolds (< 2000 bps)	79.17 %
Associated GOLD sequencing projects	84
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.27

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (88.333 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil (15.833 % of family members)
Environment Ontology (ENVO)	Unclassified (29.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (58.333 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 16.25% β-sheet: 0.00% Coil/Unstructured: 83.75%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.27
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.27
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF12680	SnoaL_2	1.67
PF00211	Guanylate_cyc	1.67
PF13649	Methyltransf_25	1.67
PF07366	SnoaL	1.67
PF09476	Pilus_CpaD	0.83
PF13564	DoxX_2	0.83
PF04199	Cyclase	0.83
PF13847	Methyltransf_31	0.83
PF12695	Abhydrolase_5	0.83
PF04430	DUF498	0.83
PF01042	Ribonuc_L-PSP	0.83
PF00383	dCMP_cyt_deam_1	0.83
PF00892	EamA	0.83
PF07609	DUF1572	0.83
PF00156	Pribosyltran	0.83
PF12127	FloA	0.83
PF03459	TOBE	0.83
PF03544	TonB_C	0.83
PF13415	Kelch_3	0.83
PF12706	Lactamase_B_2	0.83
PF04978	DUF664	0.83
PF01427	Peptidase_M15	0.83
PF01978	TrmB	0.83
PF00672	HAMP	0.83
PF05935	Arylsulfotrans	0.83
PF13884	Peptidase_S74	0.83
PF01757	Acyl_transf_3	0.83
PF13964	Kelch_6	0.83
PF00069	Pkinase	0.83
PF04519	Bactofilin	0.83
PF12704	MacB_PCD	0.83
PF00487	FA_desaturase	0.83
PF07690	MFS_1	0.83
PF08734	GYD	0.83
PF01391	Collagen	0.83
PF12867	DinB_2	0.83
PF03466	LysR_substrate	0.83
PF13185	GAF_2	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.33
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	1.67
COG0251	Enamine deaminase RidA/Endoribonuclease Rid7C, YjgF/YER057c/UK114 family	Defense mechanisms [V]	0.83
COG0810	Periplasmic protein TonB, links inner and outer membranes	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1398	Fatty-acid desaturase	Lipid transport and metabolism [I]	0.83
COG1504	Uncharacterized conserved protein, DUF498 domain	Function unknown [S]	0.83
COG1664	Cytoskeletal protein CcmA, bactofilin family	Cytoskeleton [Z]	0.83
COG1878	Kynurenine formamidase	Amino acid transport and metabolism [E]	0.83
COG2173	D-alanyl-D-alanine dipeptidase	Cell wall/membrane/envelope biogenesis [M]	0.83
COG3239	Fatty acid desaturase	Lipid transport and metabolism [I]	0.83
COG3737	Uncharacterized protein, contains Mth938-like domain	Function unknown [S]	0.83
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.83

NCBI Taxonomy

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Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	89.17 %
Unclassified	root	N/A	10.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	89.17 %
Unclassified	root	N/A	10.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	88.33 %
Unclassified	root	N/A	10.83 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.83 %

Name	Rank	Taxonomy	Distribution
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	50.83 %
Unclassified	root	N/A	10.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	2.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.67 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.83 %
Candidatus Thermoplasmatota	phylum	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota	0.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	50.83 %
Unclassified	root	N/A	10.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.83 %
Thermoplasmata	class	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	42.50 %
Unclassified	root	N/A	10.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.83 %
Thermoplasmatales	order	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.50 %
Unclassified	root	N/A	10.83 %
unclassified Thermoplasmatales	no rank	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales	0.83 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → environmental samples	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	42.50 %
Unclassified	root	N/A	10.83 %
uncultured Sphingomonadales bacterium HF0500_24B12	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → environmental samples → uncultured Sphingomonadales bacterium HF0500_24B12	0.83 %
Thermoplasmatales archaeon Gpl	species	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon Gpl	0.83 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.83 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.83 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10022412	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1728	Open in IMG/M
3300000890\|JGI11643J12802_11018771	All Organisms → cellular organisms → Bacteria	1361	Open in IMG/M
3300000956\|JGI10216J12902_111297645	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	549	Open in IMG/M
3300003324\|soilH2_10376771	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1190	Open in IMG/M
3300003911\|JGI25405J52794_10031929	All Organisms → cellular organisms → Bacteria	1096	Open in IMG/M
3300004156\|Ga0062589_101081156	All Organisms → cellular organisms → Bacteria	757	Open in IMG/M
3300004157\|Ga0062590_101737947	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	637	Open in IMG/M
3300004479\|Ga0062595_100187536	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1261	Open in IMG/M
3300004479\|Ga0062595_100396903	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	986	Open in IMG/M
3300005093\|Ga0062594_101358369	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	718	Open in IMG/M
3300005175\|Ga0066673_10008178	All Organisms → cellular organisms → Bacteria	4351	Open in IMG/M
3300005179\|Ga0066684_10737175	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → environmental samples → uncultured Sphingomonadales bacterium HF0500_24B12	657	Open in IMG/M
3300005181\|Ga0066678_10091718	All Organisms → cellular organisms → Bacteria	1822	Open in IMG/M
3300005289\|Ga0065704_10500767	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	667	Open in IMG/M
3300005295\|Ga0065707_10510622	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	750	Open in IMG/M
3300005332\|Ga0066388_100199435	All Organisms → cellular organisms → Bacteria	2621	Open in IMG/M
3300005332\|Ga0066388_103008758	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	861	Open in IMG/M
3300005332\|Ga0066388_103028712	All Organisms → cellular organisms → Bacteria → Acidobacteria	859	Open in IMG/M
3300005332\|Ga0066388_106495724	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	589	Open in IMG/M
3300005332\|Ga0066388_108339681	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	517	Open in IMG/M
3300005354\|Ga0070675_101517804	All Organisms → cellular organisms → Bacteria → Proteobacteria	618	Open in IMG/M
3300005366\|Ga0070659_100903930	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	772	Open in IMG/M
3300005446\|Ga0066686_10879836	Not Available	590	Open in IMG/M
3300005535\|Ga0070684_100806863	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005548\|Ga0070665_100069134	All Organisms → cellular organisms → Bacteria	3539	Open in IMG/M
3300005552\|Ga0066701_10053688	All Organisms → cellular organisms → Bacteria	2223	Open in IMG/M
3300005559\|Ga0066700_10062588	All Organisms → cellular organisms → Bacteria	2330	Open in IMG/M
3300005576\|Ga0066708_10640120	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	678	Open in IMG/M
3300005617\|Ga0068859_102921940	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	523	Open in IMG/M
3300005764\|Ga0066903_100830640	All Organisms → cellular organisms → Bacteria	1658	Open in IMG/M
3300005764\|Ga0066903_101583659	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1241	Open in IMG/M
3300005764\|Ga0066903_101965424	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1122	Open in IMG/M
3300005764\|Ga0066903_102535095	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	993	Open in IMG/M
3300005764\|Ga0066903_104607219	Not Available	734	Open in IMG/M
3300005764\|Ga0066903_105273024	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005764\|Ga0066903_105285562	All Organisms → cellular organisms → Bacteria	683	Open in IMG/M
3300005764\|Ga0066903_106376399	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300005764\|Ga0066903_106586656	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005764\|Ga0066903_106594605	All Organisms → cellular organisms → Bacteria	604	Open in IMG/M
3300005764\|Ga0066903_106835822	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300005764\|Ga0066903_107799003	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	550	Open in IMG/M
3300005764\|Ga0066903_108705056	Not Available	516	Open in IMG/M
3300005764\|Ga0066903_109001325	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	505	Open in IMG/M
3300005937\|Ga0081455_10012919	All Organisms → cellular organisms → Bacteria	8283	Open in IMG/M
3300005937\|Ga0081455_10384001	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	980	Open in IMG/M
3300005985\|Ga0081539_10010021	All Organisms → cellular organisms → Bacteria	7799	Open in IMG/M
3300006797\|Ga0066659_11533425	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	558	Open in IMG/M
3300006871\|Ga0075434_100682835	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1045	Open in IMG/M
3300006914\|Ga0075436_100644067	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	782	Open in IMG/M
3300007255\|Ga0099791_10424989	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	641	Open in IMG/M
3300009156\|Ga0111538_11633637	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	812	Open in IMG/M
3300009162\|Ga0075423_11236423	Not Available	797	Open in IMG/M
3300009792\|Ga0126374_10432176	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300009792\|Ga0126374_11071929	Not Available	637	Open in IMG/M
3300010043\|Ga0126380_11128458	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	670	Open in IMG/M
3300010046\|Ga0126384_11979167	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	557	Open in IMG/M
3300010047\|Ga0126382_11198774	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300010320\|Ga0134109_10092665	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1044	Open in IMG/M
3300010361\|Ga0126378_13002228	All Organisms → cellular organisms → Bacteria	538	Open in IMG/M
3300010366\|Ga0126379_10008530	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7059	Open in IMG/M
3300010366\|Ga0126379_11926494	Not Available	694	Open in IMG/M
3300010366\|Ga0126379_12593305	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	605	Open in IMG/M
3300010371\|Ga0134125_12391605	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	574	Open in IMG/M
3300010376\|Ga0126381_100070321	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	4364	Open in IMG/M
3300010376\|Ga0126381_101073545	All Organisms → cellular organisms → Bacteria	1163	Open in IMG/M
3300010398\|Ga0126383_10541545	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300010398\|Ga0126383_12326751	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	621	Open in IMG/M
3300012200\|Ga0137382_10175055	All Organisms → cellular organisms → Bacteria	1466	Open in IMG/M
3300012204\|Ga0137374_10151132	All Organisms → cellular organisms → Bacteria	2073	Open in IMG/M
3300012285\|Ga0137370_10002864	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	7520	Open in IMG/M
3300012362\|Ga0137361_10039085	All Organisms → cellular organisms → Bacteria	3835	Open in IMG/M
3300012507\|Ga0157342_1039539	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	626	Open in IMG/M
3300012510\|Ga0157316_1037046	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	619	Open in IMG/M
3300012923\|Ga0137359_10385844	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	1243	Open in IMG/M
3300012927\|Ga0137416_10872080	All Organisms → cellular organisms → Bacteria	799	Open in IMG/M
3300012929\|Ga0137404_10005797	All Organisms → cellular organisms → Bacteria	8349	Open in IMG/M
3300012930\|Ga0137407_10018557	All Organisms → cellular organisms → Bacteria	5162	Open in IMG/M
3300012944\|Ga0137410_11328039	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	623	Open in IMG/M
3300012948\|Ga0126375_10840837	Not Available	731	Open in IMG/M
3300012951\|Ga0164300_11066717	Not Available	525	Open in IMG/M
3300012989\|Ga0164305_10343585	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300013296\|Ga0157374_10462237	All Organisms → cellular organisms → Bacteria	1271	Open in IMG/M
3300013296\|Ga0157374_11865170	Not Available	627	Open in IMG/M
3300013297\|Ga0157378_10527614	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1183	Open in IMG/M
3300014969\|Ga0157376_12985995	Not Available	512	Open in IMG/M
3300015371\|Ga0132258_10059723	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	8775	Open in IMG/M
3300015371\|Ga0132258_13571143	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1064	Open in IMG/M
3300015372\|Ga0132256_100080552	All Organisms → cellular organisms → Bacteria	3115	Open in IMG/M
3300015372\|Ga0132256_100796720	Not Available	1061	Open in IMG/M
3300015373\|Ga0132257_101508567	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300016341\|Ga0182035_10183026	All Organisms → cellular organisms → Bacteria	1642	Open in IMG/M
3300016341\|Ga0182035_10923019	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	771	Open in IMG/M
3300016357\|Ga0182032_10036463	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	3063	Open in IMG/M
3300016357\|Ga0182032_11459030	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	593	Open in IMG/M
3300018433\|Ga0066667_11345864	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	625	Open in IMG/M
3300019362\|Ga0173479_10586607	Not Available	580	Open in IMG/M
3300019886\|Ga0193727_1124902	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	731	Open in IMG/M
3300022756\|Ga0222622_10746292	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	713	Open in IMG/M
3300025315\|Ga0207697_10029283	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2253	Open in IMG/M
3300025930\|Ga0207701_10052331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	3751	Open in IMG/M
3300025933\|Ga0207706_10997363	Not Available	704	Open in IMG/M
3300026023\|Ga0207677_11258840	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	678	Open in IMG/M
3300026316\|Ga0209155_1023735	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	2542	Open in IMG/M
3300026326\|Ga0209801_1136674	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1042	Open in IMG/M
3300026550\|Ga0209474_10098318	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1975	Open in IMG/M
3300026861\|Ga0207503_1010232	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	578	Open in IMG/M
3300028379\|Ga0268266_11399116	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	675	Open in IMG/M
3300028784\|Ga0307282_10028057	All Organisms → cellular organisms → Bacteria	2413	Open in IMG/M
3300028819\|Ga0307296_10043373	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2373	Open in IMG/M
3300031573\|Ga0310915_11193863	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	526	Open in IMG/M
3300031716\|Ga0310813_10165346	All Organisms → cellular organisms → Bacteria	1792	Open in IMG/M
3300031770\|Ga0318521_10177348	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1222	Open in IMG/M
3300031912\|Ga0306921_12350974	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	557	Open in IMG/M
3300031946\|Ga0310910_10276764	All Organisms → cellular organisms → Archaea → Candidatus Thermoplasmatota → Thermoplasmata → Thermoplasmatales → unclassified Thermoplasmatales → Thermoplasmatales archaeon Gpl	1317	Open in IMG/M
3300031946\|Ga0310910_10349767	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	1168	Open in IMG/M
3300031954\|Ga0306926_10083607	All Organisms → cellular organisms → Bacteria	3889	Open in IMG/M
3300031962\|Ga0307479_10124606	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2516	Open in IMG/M
3300032013\|Ga0310906_10738552	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	691	Open in IMG/M
3300032261\|Ga0306920_100061667	All Organisms → cellular organisms → Bacteria	5471	Open in IMG/M
3300032261\|Ga0306920_101209118	All Organisms → cellular organisms → Bacteria	1091	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	76.67%
Host-Associated	Host-Associated	23.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.83%
Plants	Host-Associated → Plants	23.33%
Aquatic	Environmental → Aquatic	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	75.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	12.50%
Rhizoplane	Host-Associated → Plants → Rhizoplane	10.83%
Sediment	Environmental → Aquatic → Sediment	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	57.50%
Loam	Environmental → Terrestrial → Soil → Loam	18.33%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	7.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	28.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	11.67%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	7.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.67%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.33%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.67%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	15.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	9.17%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	8.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	3.33%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.33%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	3.33%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	2.50%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.67%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	0.83%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000890	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300003911	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005175	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005181	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127	Environmental	Open in IMG/M
3300005289	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2	Host-Associated	Open in IMG/M
3300005295	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005354	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG	Host-Associated	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005548	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG	Host-Associated	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005617	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2	Host-Associated	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_11112015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010371	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-1	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012507	Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610	Host-Associated	Open in IMG/M
3300012510	Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.9.old.080610	Host-Associated	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013297	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG	Host-Associated	Open in IMG/M
3300014969	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300022756	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1	Environmental	Open in IMG/M
3300025315	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Host-Associated	Open in IMG/M
3300025930	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026316	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122 (SPAdes)	Environmental	Open in IMG/M
3300026326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)	Environmental	Open in IMG/M
3300026550	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145 (SPAdes)	Environmental	Open in IMG/M
3300026861	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A5a-12 (SPAdes)	Environmental	Open in IMG/M
3300028379	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028819	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100224124	3300000597	Forest Soil	MMAATIKGAEMKTILMLTVGLMLAGCGSMENHVRNHGAPPTSAGPLAGPGDRIAGETICACP*
JGI11643J12802_110187714	3300000890	Soil	MKTILILTVGLMLAGCGSTEKHVRNHGAPPTSAGPLAGPGDRVAVD
JGI10216J12902_1112976452	3300000956	Soil	MKTILMLIIGLMMLAGCGSMKNHVRNHDVTSSSRPVLQHDGERIAVDMNALALEIDS
soilH2_103767712	3300003324	Sugarcane Root And Bulk Soil	MKTILMLIVGLILAGCGSTDTHVRNDNAPPTSAGALAGPGDRIAGETICACP*
JGI25405J52794_100319292	3300003911	Tabebuia Heterophylla Rhizosphere	MKTILMLTVGLMLAGCGSMENHVRNHTVASTSRAPLPDRGNGIAVDTICACP*
Ga0062589_1010811561	3300004156	Soil	MKTILMLTVGLMLAGCGSTENHVRNHGVASTFPEYDRGDRIAIDTICACP*
Ga0062590_1017379471	3300004157	Soil	MKTILMLIVGLMLAGCGSMDNHVRNHGVASTSRLALQDRGNGIAVDTICACP*
Ga0062595_1001875361	3300004479	Soil	MKTILILIVGLMLAACGSMENHVRNPGVVSTFPEYDRGDRIAIDTICA
Ga0062595_1003969032	3300004479	Soil	MKTILMLTVGLMLAACGSMQNDVRNHGGVSTSQYAELPDPGNTVAVDTICMCP*
Ga0062594_1013583691	3300005093	Soil	VRPQSTRKAQMKTILMSIVGLMLAGCGSMENHVQNVNVPAPLPDPGDTIAVNTICACP*
Ga0066673_100081785	3300005175	Soil	MKTILMLTVGLMLAGCGSTENHVRNNGVASTFPEYDRGDRIAIDTICACP*
Ga0066684_107371751	3300005179	Soil	MKTILVLTVGLMLGGCGSMENHVRNNGVASSFPEYDRGDRIAIDTICACP*
Ga0066678_100917185	3300005181	Soil	MKTILMLTVGLILAGCGSTENHVRNNGVVSTFPEYDRGDRIAIDTIALALDD
Ga0065704_105007671	3300005289	Switchgrass Rhizosphere	MKTILMLTVGLMLTGCGSMENHGRNHGFPPTSAGPLAGPGD
Ga0065707_105106221	3300005295	Switchgrass Rhizosphere	MKTILMLTVGLMLTGCGSIENHGRNHGFPPTSAGPLAGPGDRIAVDTICACP*
Ga0066388_1001994354	3300005332	Tropical Forest Soil	MKTILMLTIGLMLAGCGSMKNDVRNHGAPPTSAGPLAGPGDRIAVDTICACP*
Ga0066388_1030087582	3300005332	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMEISRAPRAPLPDPGNTIAVDTICACP*
Ga0066388_1030287123	3300005332	Tropical Forest Soil	MKTILVLTIGLMLAGCGSMENHVGNQGAPPTSAGPLAGPGDRIAV
Ga0066388_1064957241	3300005332	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMKNDARNHGVASTSRIALPDRGETIAVDIICACP*
Ga0066388_1083396811	3300005332	Tropical Forest Soil	MKTILMLIVGLMLAGCGSMENNARNHGGASTSSNTTAVDRICACP*
Ga0070675_1015178042	3300005354	Miscanthus Rhizosphere	MKTILMLIVGLMLAGCGSMENQLRNHGVASTSQPPLPDPGDTIAVDTIC
Ga0070659_1009039302	3300005366	Corn Rhizosphere	MKTILMSTVGLILAGCGSTENHVRNHGVGAPPTSGGPLAGPGDRIAL
Ga0066686_108798361	3300005446	Soil	GLMLAGCGSMENHVRNHGVASTPVPDPGDWIAVDTIALALDD*
Ga0070684_1008068631	3300005535	Corn Rhizosphere	MLTVGLMLAGCGSMENHGRNNNFPPTSAGPLAGPGDRIAGETI
Ga0070665_1000691342	3300005548	Switchgrass Rhizosphere	MKTILMLTVGLMLAGCGSMENHGRNNNFPPTSAGPLAGPGDRIAGETICACP*
Ga0066701_100536884	3300005552	Soil	MKTILMLIVGLMLAGCGSMENHVRNDGVASTSQLPLPDPGNTIAVDTICACP*
Ga0066700_100625882	3300005559	Soil	MKTILMLIVGLMLAGCGSMENHVRNHGVASTSRPPLPDPGDTIAVDTICACP*
Ga0066708_106401203	3300005576	Soil	VGLMLAGCGSMENHGRNHGFTPTSAGPLAGTGDRIAVDTNALALDD*
Ga0068859_1029219402	3300005617	Switchgrass Rhizosphere	MKTILMLTVGLMLAGCGSMENHVRNHGGASTSRFAELPDPGNTVAVDTICACP*
Ga0066903_1008306402	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMEQPMVFEKHGAPPTSAGNLAGPGDRIAVDTICACF*
Ga0066903_1015836591	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMENDVRNHGVASTSRIALPDRAKKTSNQAVQRTAVDTLCACP
Ga0066903_1019654241	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSTENHIRNHGVASTFPEYDRGDRIAIDTICACP*
Ga0066903_1025350952	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMEKPMAFEKHGAPPTSAGNLAGPGDRIAVDTICACP*
Ga0066903_1046072192	3300005764	Tropical Forest Soil	MKTILIIAVGLMLAGCGSMHKDVQFYGGSLTSAEGLAGPGDRIAVDTICACP*
Ga0066903_1052730241	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSTENHVRNHGVASTFPEYDRGDRIAIDTI
Ga0066903_1052855622	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSTENHVRKHGGASTSQYAELPDPGNTVAVDTICACP*
Ga0066903_1063763992	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMENHGRNHGFPPTSAGPLAGPGDRI
Ga0066903_1065866561	3300005764	Tropical Forest Soil	MKTILMFTVGLMLAGCGSMEISRPSRVPLPDPGNTIAVDTICACP*
Ga0066903_1065946051	3300005764	Tropical Forest Soil	CGDNQGQHKMKTILMLTVVGLMLAGCGSTENHVRNNGVGVASTSAGPLAGPGDRIAVDTICACP*
Ga0066903_1068358221	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMENHVRDHGAPPTSAGPLAGPGDRIAVDTICACP*
Ga0066903_1077990031	3300005764	Tropical Forest Soil	MLTVGLMLAGCGSMENDVQNHGAPPTSAGPLAGPGDRIAVDTIALALDE*
Ga0066903_1087050561	3300005764	Tropical Forest Soil	VGLMLAGCGSMENDGRNHGVASTSRFVLPDRGNTIAVDTIALALDD*
Ga0066903_1090013252	3300005764	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMENDVRNHGVASTSRFALPDRGNTIAVNTICACP*
Ga0081455_100129191	3300005937	Tabebuia Heterophylla Rhizosphere	MKTILMLTVGLMLAGCGSMENHGRNNGFPPTSAGPLAGPGDRIAVD
Ga0081455_103840012	3300005937	Tabebuia Heterophylla Rhizosphere	MKTILMLTVGLMLAGCGSMENHVRNHGAPPTSAGPLAGPGDRIAVDTICACP*
Ga0081539_100100211	3300005985	Tabebuia Heterophylla Rhizosphere	MKTILMLTVGLMLAGCGSMQNNVQSHSAPPTSAGALAGPGDRIAVNTICACP*
Ga0066659_115334251	3300006797	Soil	MKTILMLTVGLILAGCGSTENHVRNNGVVSTFPEYDRGDRIAIDTICACP*
Ga0075434_1006828352	3300006871	Populus Rhizosphere	IVGLMLAGCGSMENHVRNVNLPAPLPDPGDTIAVDTICACP*
Ga0075436_1006440671	3300006914	Populus Rhizosphere	MKTILMLIVGLMLAGCGSMENHLRDHGVASTSRPPLPDPGDTIAVDTNALALDD*
Ga0099791_104249891	3300007255	Vadose Zone Soil	MKTILMLTVGLILAGCGSTENHVRNNGVVSTFPEYDRGDRIA
Ga0111538_116336373	3300009156	Populus Rhizosphere	MLIVGLMLAGCGSMENHVRNQGVASTSAGPLAGPGDRIAVD
Ga0075423_112364232	3300009162	Populus Rhizosphere	MKTILMLIVGLMLAGCGSMENHLRDHGVASTSRPPLPDPGDTIAVDTICA
Ga0126374_104321762	3300009792	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMESHDFDHGFPPTSAGPLAGTGDRIAVDTICACP*
Ga0126374_110719291	3300009792	Tropical Forest Soil	MKTILMLTVGLILAGCGSMENHGQNHGFPPTSAGPLA
Ga0126380_111284581	3300010043	Tropical Forest Soil	AQMKTILMLTVGLMLAGCGSMENDVRNHGVASTSRIPLPDRGDTIAVDTICACP*
Ga0126384_119791671	3300010046	Tropical Forest Soil	QMKTILMLTVGLMLAGCGSMANDVQNHRAASTSRFTLPEGAKSIAVDTICACP*
Ga0126382_111987742	3300010047	Tropical Forest Soil	MVNDAATIKGDPQMKTILTLTVGLMLAGCGSMENDVRNHGVASTSRFALPDRGNTIAVDTICACP*
Ga0134109_100926651	3300010320	Grasslands Soil	MKTIVMLTVGLMLAGCGSMENHVRNHGAASTFPEYDRGNRIAV
Ga0126378_130022281	3300010361	Tropical Forest Soil	MKTTLMLTVGLMLAGCGSIENDVQNNGAPPTSAGSLAGPG
Ga0126379_100085307	3300010366	Tropical Forest Soil	MKTILMLTVGLILAGCGSMENHGQNHGFPPTSAGPLAGPGDRIAVDTICVCP*
Ga0126379_119264942	3300010366	Tropical Forest Soil	MKTILMWIVGLMLAGCGSMGNHVRNDGVASTSRPPLPHPGDTIAVDT
Ga0126379_125933052	3300010366	Tropical Forest Soil	IAQMKTILMLTVALMLAGCGSMENHVRNQGVASTPLPDRGDWIAVDTICACP*
Ga0134125_123916051	3300010371	Terrestrial Soil	AQMKTILMLIVGLMLAGCGSMENHVRNHGVASTSRFALQDRGNGIAVDTICACP*
Ga0126381_1000703212	3300010376	Tropical Forest Soil	MLTVGLMLAGCGSTENHVRNNGVASTSAGPLAGPGDRIAVDTICACP*
Ga0126381_1010735453	3300010376	Tropical Forest Soil	MYVVWKPELIFDCRMVNNAATIKESTMKTLLMLTVAVMLAGCGSTENHVRNHGVASTFPEYDRGDRIAIDTICACP*
Ga0126383_105415452	3300010398	Tropical Forest Soil	MKTILMLTVGLMLAGCGSMENDGRNNAFPPTSAGPLAGPGDRIAVDTICACP*
Ga0126383_123267511	3300010398	Tropical Forest Soil	RRAQMKTILMLTVGLMLAGCGSMENDVRNHGVASTSRIALPDPGNGIAVDTICACP*
Ga0137382_101750553	3300012200	Vadose Zone Soil	MKIILMLIVGLMLADCGSMENHVRNHGVASTSRPFLQDRGNGIAVDTICACP*
Ga0137374_101511323	3300012204	Vadose Zone Soil	MKTILMLIVGLMLADCGSMENNVRNHGVASTSGPASQDRGNRIAVDTICACP*
Ga0137370_100028644	3300012285	Vadose Zone Soil	MKTILMLTVGLMLAGCGSMKNDVRNHGVASTSRIALPDRGNGIAVDAICACP*
Ga0137361_100390851	3300012362	Vadose Zone Soil	RKAQMKTILMLTVGLMLAGCGSTENHVRNNGVASTFPEYDRGDRIAIDTICACP*
Ga0157342_10395393	3300012507	Arabidopsis Rhizosphere	MKTILMLTVGLMLAGCGSTENHVRNHGVASTFPEYDRGDRIAIDTICA
Ga0157316_10370462	3300012510	Arabidopsis Rhizosphere	MANDPAMINQEAQMKTILMLIVGLMLGGCGSMEKHVRNQGVASTPVQDRGDWIAVDTICACP*
Ga0137359_103858441	3300012923	Vadose Zone Soil	MAKDSATIKGAHKMKTILMLTVGLMLAGCRSMENDVRNHGGASTSQFAELPDPGNTVAVDTICACP*
Ga0137416_108720804	3300012927	Vadose Zone Soil	WQMIRPQSTRKAQMKTTLMLIVGMMLAGCGSTENHVRNHGVASTSRIAMQDRGNGIAVDTICACP*
Ga0137404_100057972	3300012929	Vadose Zone Soil	MKTILMLTVGLMLAGCGSMENQGRNDGFPPTSAGPLAGPGDRIAVDTICACP*
Ga0137407_100185572	3300012930	Vadose Zone Soil	MKTILMLIVGLMLAGCGSMENHVRNHGVASTSRPALPDRGNGIAVDTICACP*
Ga0137410_113280391	3300012944	Vadose Zone Soil	KAQMKTILMLIVGLMLAGCGSMENHVRNHGVASTSRPALQDRGNGIAVDTICACP*
Ga0126375_108408371	3300012948	Tropical Forest Soil	MKTILILTVGLMLAGCGSTENDVRNHSVASTSRIALPDRGNGIAVDTI
Ga0164300_110667171	3300012951	Soil	MKTLLMLTVGLMLAGCGSTENHVRTHGVASTFPEYDRGDRIAIDTICACP*
Ga0164305_103435852	3300012989	Soil	MKTLLMLTVGLMLAGCGSTENHVRNHGVASTFPEYDRGDRIAIDTICACP*
Ga0157374_104622372	3300013296	Miscanthus Rhizosphere	MKTILMLTVGLMLAACGSMQNDVRNHGGVSTSQYAELPDTGNTVAVDTLCM*
Ga0157374_118651701	3300013296	Miscanthus Rhizosphere	MVRPQSTRKAQMKTILILIVGLMLAACGSMENHVRNPGVVSTFPEYDRGDRIAIDTICACP*
Ga0157378_105276142	3300013297	Miscanthus Rhizosphere	KAQMKTILMLIVGLMLAGCGSMENHVRNHGVASTSRFALQDRGNGIAVDTICACP*
Ga0157376_129859951	3300014969	Miscanthus Rhizosphere	MKTILMLTVGLMLAGCGSMENHGRNNNFPPTSAGPLAGPGDRIAGETI
Ga0132258_1005972314	3300015371	Arabidopsis Rhizosphere	MLALGLMLAGCGSTENHVQKHGVASRSQYAELPDPGNTVAVDTICACP*
Ga0132258_135711431	3300015371	Arabidopsis Rhizosphere	MKTILMLTVGLMLAGCGSTGNHVRNQGGASTPVQDRGDWIAVD
Ga0132256_1000805526	3300015372	Arabidopsis Rhizosphere	MKTILMLTVGLMLAGCGSTENHVRNHGFPPTSAGPLAGPGDRIAVDTVCACP*
Ga0132256_1007967203	3300015372	Arabidopsis Rhizosphere	MKTILMLALGLMLAGCGSMENHVQNHGVASRSQFAELPDPGNTVAVDTICACP*
Ga0132257_1015085671	3300015373	Arabidopsis Rhizosphere	MKTILMLTVGLMLAGCGSMENHGGNNRYPPTSAGPLAGPG
Ga0182035_101830264	3300016341	Soil	MKTILMLIVGLMLAGCGSMENHVRNQGVASTPVQDRGDWIAVD
Ga0182035_109230191	3300016341	Soil	MKTILMLTVGLMLASCGSTENHVRNHGAASTFPEYDRGDRIAIDTICACP
Ga0182032_100364632	3300016357	Soil	MKTILMLTVGLMLAGCGSTENHVRNHGVASTFPEYDRGDRIAIDTICACP
Ga0182032_114590301	3300016357	Soil	AQMKTILMLTVGLMLAGCGSTENHVRNHGVASTFPEYDRRDRIAIDTICACP
Ga0066667_113458641	3300018433	Grasslands Soil	MKTILMLIVGLMLAGCGSMENHVRNHGVASTSRPPLPDPGDTIA
Ga0173479_105866071	3300019362	Soil	MKTLLMLTVGLMLAGCGSTENYVRNHGVASTFPEYDRGDRIAIDTICACP
Ga0193727_11249021	3300019886	Soil	MKTILMLTVGLMLAGCGSMENHGRNHGFSPTSAGPLAGPGDRIA
Ga0222622_107462921	3300022756	Groundwater Sediment	RPQSTVKAQMKTILMLIVGLMLAGCGSMENHVRNHGVASTSRFALQDRGNGIAVDTICAC
Ga0207697_100292836	3300025315	Corn, Switchgrass And Miscanthus Rhizosphere	MKTILMLIVGLMLAGCGSMDNHVRNHGVASTSRLALQDRGNGIAVDTIC
Ga0207701_100523315	3300025930	Corn, Switchgrass And Miscanthus Rhizosphere	MKTILILIVGLMLAACGSMENHVRNPGVVSTFPEYDRGDRIAIDTICACP
Ga0207706_109973631	3300025933	Corn Rhizosphere	MVRPQSTRKAQMKTILILIVGLMLAACGSMENHVRNPGVVSTFPEYDRGDRIAIDTICAC
Ga0207677_112588401	3300026023	Miscanthus Rhizosphere	MLTVGLMLAGCGSMENHGRNNNFPPTSAGPLAGPGDR
Ga0209155_10237353	3300026316	Soil	MKTILMLTVGLMLAGCGSTENHVRNNGVASTFPEYDRGDRIAIDTICACP
Ga0209801_11366741	3300026326	Soil	MKTILMLIVGLMLAGCGSMENHVRNHGVASTSRPPLPDPGDTIAVDTICAC
Ga0209474_100983181	3300026550	Soil	MKTILMLTVGLMLAGCGSMENHGRNHGFTPTSAGPLAGTGDRIAVDTICACP
Ga0207503_10102321	3300026861	Soil	MKTILMLIVALMLAGCGSMENHVPTSGPDSYDRGNRIAVDTICACP
Ga0268266_113991161	3300028379	Switchgrass Rhizosphere	MKTILMLTVGLMLAGCGSMENHGRNNNFPPTSAGPLAGPGDRI
Ga0307282_100280574	3300028784	Soil	MANDLATINGKAQMKTILMLIVGLMLAGCGSMENHVRNHAVASTSRPALQDRGNGIAVDTICACP
Ga0307296_100433735	3300028819	Soil	MLIVGLMLAGCGSMKNHVRNHGVASTSRPALQDRGNGIAVDTICAC
Ga0310915_111938631	3300031573	Soil	MKTILMLTVGLMLAGCGSMENHVRNHGAPPTSAGPLAGPGDRIAVDTICAC
Ga0310813_101653462	3300031716	Soil	MKTILMLTVGLMLAACGSMQNDVRNHGGVSTSQYAELPDPGNTVAVDTICMCP
Ga0318521_101773483	3300031770	Soil	MKTILMLTVGLMLAGCGSMENHGRNHGFPPTSAGPLAGFGDRIA
Ga0306921_123509741	3300031912	Soil	FTRAKGHHKTTLMLTVGLMLAGCGSMENDVRNHRVASTSRIALPDPGNTIAVDTICACP
Ga0310910_102767641	3300031946	Soil	TVGLMLTGCGSMENDVRNHGVASTSRIAVGDPGNTIAVDTICACP
Ga0310910_103497671	3300031946	Soil	QMKTILVLTVGLMLAGCGSMKNDVQNNGAPPTSAGPLAGPGDRIAVDTICACP
Ga0306926_100836072	3300031954	Soil	MKTILMLTVGLMLAGCGSMENHVRNHGFPPTSAGPLAGFGDRMAVDTICACP
Ga0307479_101246061	3300031962	Hardwood Forest Soil	MLIVGLMLAGCGSMENHGRNHGFPPTSAGPLAGPGDRIAVDT
Ga0310906_107385522	3300032013	Soil	MLIVGLMLAGCGSMENHVRNHGAPPTSAGPLAGPGDR
Ga0306920_1000616676	3300032261	Soil	MKTILMLTVGLMLAGCGSMENHVRNHGFPPTSAGPLAGFGDRMAV
Ga0306920_1012091183	3300032261	Soil	MKTILMLTVGLMLTGCGSMENDVRNHGVASTSRIAVGDPGNTIAVDTICA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073302

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences