Metagenome / Metatranscriptome Family F073314

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073314
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	47 residues
Representative Sequence	MRTFMIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKN
Number of Associated Samples	97
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.87 %
% of genes near scaffold ends (potentially truncated)	97.50 %
% of genes from short scaffolds (< 2000 bps)	92.50 %
Associated GOLD sequencing projects	90
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (70.000 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (43.333 % of family members)
Environment Ontology (ENVO)	Unclassified (60.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (45.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 59.57% β-sheet: 0.00% Coil/Unstructured: 40.43%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF01979	Amidohydro_1	13.33
PF00583	Acetyltransf_1	9.17
PF04392	ABC_sub_bind	6.67
PF14226	DIOX_N	5.83
PF00106	adh_short	3.33
PF13594	Obsolete Pfam Family	2.50
PF03401	TctC	1.67
PF01594	AI-2E_transport	1.67
PF02371	Transposase_20	1.67
PF04226	Transgly_assoc	0.83
PF07758	DUF1614	0.83
PF13409	GST_N_2	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	6.67
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	1.67
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	1.67
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.67
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	0.83
COG4089	Uncharacterized membrane protein	Function unknown [S]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	70.00 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	60.83 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	58.33 %
Unclassified	root	N/A	30.00 %

Name	Rank	Taxonomy	Distribution
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	36.67 %
Unclassified	root	N/A	30.00 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.50 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.67 %
Unclassified	root	N/A	30.00 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.67 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.67 %
Unclassified	root	N/A	30.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.17 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.67 %
Unclassified	root	N/A	30.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.17 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.83 %

Name	Rank	Taxonomy	Distribution
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	36.67 %
Unclassified	root	N/A	30.00 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4.17 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_100202917	Not Available	521	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10013882	All Organisms → cellular organisms → Bacteria → Proteobacteria	2213	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10144261	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	575	Open in IMG/M
3300005332\|Ga0066388_106004333	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	613	Open in IMG/M
3300005363\|Ga0008090_10073527	Not Available	631	Open in IMG/M
3300005363\|Ga0008090_10097804	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300005363\|Ga0008090_10133656	Not Available	617	Open in IMG/M
3300005536\|Ga0070697_100423227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1157	Open in IMG/M
3300005549\|Ga0070704_100573384	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	989	Open in IMG/M
3300005561\|Ga0066699_10708379	Not Available	717	Open in IMG/M
3300005764\|Ga0066903_101626417	Not Available	1226	Open in IMG/M
3300005764\|Ga0066903_104844624	All Organisms → cellular organisms → Bacteria → Proteobacteria	715	Open in IMG/M
3300006046\|Ga0066652_101533183	Not Available	616	Open in IMG/M
3300006796\|Ga0066665_11449467	Not Available	533	Open in IMG/M
3300006852\|Ga0075433_11075678	All Organisms → cellular organisms → Bacteria	700	Open in IMG/M
3300006854\|Ga0075425_101461615	Not Available	772	Open in IMG/M
3300009162\|Ga0075423_13115136	Not Available	508	Open in IMG/M
3300009176\|Ga0105242_10301445	All Organisms → cellular organisms → Bacteria → Proteobacteria	1463	Open in IMG/M
3300010047\|Ga0126382_11622257	Not Available	601	Open in IMG/M
3300010048\|Ga0126373_10994227	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	904	Open in IMG/M
3300010360\|Ga0126372_10894209	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	890	Open in IMG/M
3300010366\|Ga0126379_11104926	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	899	Open in IMG/M
3300010366\|Ga0126379_12948575	Not Available	569	Open in IMG/M
3300010366\|Ga0126379_12962382	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	568	Open in IMG/M
3300010376\|Ga0126381_100143582	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3122	Open in IMG/M
3300010398\|Ga0126383_12541395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	596	Open in IMG/M
3300010398\|Ga0126383_12895443	Not Available	560	Open in IMG/M
3300010863\|Ga0124850_1051665	Not Available	1286	Open in IMG/M
3300010868\|Ga0124844_1059703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1370	Open in IMG/M
3300010868\|Ga0124844_1067316	All Organisms → cellular organisms → Bacteria	1309	Open in IMG/M
3300012205\|Ga0137362_10453441	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1110	Open in IMG/M
3300012208\|Ga0137376_11072936	Not Available	689	Open in IMG/M
3300012361\|Ga0137360_10429241	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1117	Open in IMG/M
3300012582\|Ga0137358_10211324	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1324	Open in IMG/M
3300012951\|Ga0164300_11203855	Not Available	502	Open in IMG/M
3300012989\|Ga0164305_12056029	Not Available	522	Open in IMG/M
3300016294\|Ga0182041_10688548	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300016319\|Ga0182033_11144195	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	696	Open in IMG/M
3300016341\|Ga0182035_11306151	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	650	Open in IMG/M
3300016341\|Ga0182035_11757490	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	561	Open in IMG/M
3300016357\|Ga0182032_10775942	Not Available	809	Open in IMG/M
3300016371\|Ga0182034_10598472	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	930	Open in IMG/M
3300016371\|Ga0182034_10894514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	763	Open in IMG/M
3300016387\|Ga0182040_10419495	Not Available	1054	Open in IMG/M
3300016404\|Ga0182037_10638767	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	906	Open in IMG/M
3300016422\|Ga0182039_10709874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	887	Open in IMG/M
3300016422\|Ga0182039_10882883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	797	Open in IMG/M
3300016445\|Ga0182038_10647355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	916	Open in IMG/M
3300016445\|Ga0182038_11150245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	691	Open in IMG/M
3300021168\|Ga0210406_10850623	Not Available	690	Open in IMG/M
3300025915\|Ga0207693_10531043	Not Available	918	Open in IMG/M
3300026319\|Ga0209647_1268627	Not Available	571	Open in IMG/M
3300026320\|Ga0209131_1027799	All Organisms → cellular organisms → Bacteria	3337	Open in IMG/M
3300026514\|Ga0257168_1148608	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	522	Open in IMG/M
3300027643\|Ga0209076_1137696	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	686	Open in IMG/M
3300027874\|Ga0209465_10137080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1212	Open in IMG/M
3300027875\|Ga0209283_10102447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1873	Open in IMG/M
3300031231\|Ga0170824_108997531	Not Available	651	Open in IMG/M
3300031543\|Ga0318516_10233663	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1063	Open in IMG/M
3300031543\|Ga0318516_10796201	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	534	Open in IMG/M
3300031545\|Ga0318541_10349834	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	825	Open in IMG/M
3300031546\|Ga0318538_10189029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1097	Open in IMG/M
3300031573\|Ga0310915_11225264	Not Available	518	Open in IMG/M
3300031679\|Ga0318561_10052869	All Organisms → cellular organisms → Bacteria	2038	Open in IMG/M
3300031681\|Ga0318572_10367324	Not Available	854	Open in IMG/M
3300031681\|Ga0318572_10948028	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	511	Open in IMG/M
3300031682\|Ga0318560_10537220	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	633	Open in IMG/M
3300031713\|Ga0318496_10103908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1526	Open in IMG/M
3300031744\|Ga0306918_10611070	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	854	Open in IMG/M
3300031748\|Ga0318492_10271465	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	879	Open in IMG/M
3300031770\|Ga0318521_10320172	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	915	Open in IMG/M
3300031770\|Ga0318521_10392447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	826	Open in IMG/M
3300031770\|Ga0318521_10789280	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	578	Open in IMG/M
3300031771\|Ga0318546_10252164	Not Available	1215	Open in IMG/M
3300031771\|Ga0318546_10506270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	847	Open in IMG/M
3300031777\|Ga0318543_10494024	Not Available	548	Open in IMG/M
3300031782\|Ga0318552_10193909	All Organisms → cellular organisms → Bacteria	1027	Open in IMG/M
3300031793\|Ga0318548_10164938	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1082	Open in IMG/M
3300031796\|Ga0318576_10193018	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	957	Open in IMG/M
3300031805\|Ga0318497_10143799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1302	Open in IMG/M
3300031833\|Ga0310917_10236803	Not Available	1227	Open in IMG/M
3300031835\|Ga0318517_10219174	Not Available	858	Open in IMG/M
3300031894\|Ga0318522_10280577	All Organisms → cellular organisms → Bacteria	631	Open in IMG/M
3300031896\|Ga0318551_10299048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	905	Open in IMG/M
3300031897\|Ga0318520_10766494	Not Available	605	Open in IMG/M
3300031910\|Ga0306923_10386142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1594	Open in IMG/M
3300031910\|Ga0306923_10701543	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1126	Open in IMG/M
3300031910\|Ga0306923_11016425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	899	Open in IMG/M
3300031912\|Ga0306921_11521517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	730	Open in IMG/M
3300031941\|Ga0310912_10774996	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	741	Open in IMG/M
3300031942\|Ga0310916_11315637	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300031945\|Ga0310913_10460082	All Organisms → cellular organisms → Bacteria	903	Open in IMG/M
3300031954\|Ga0306926_10579812	All Organisms → cellular organisms → Bacteria	1371	Open in IMG/M
3300031981\|Ga0318531_10352042	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	666	Open in IMG/M
3300032035\|Ga0310911_10363168	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	836	Open in IMG/M
3300032039\|Ga0318559_10393893	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	646	Open in IMG/M
3300032041\|Ga0318549_10581312	Not Available	503	Open in IMG/M
3300032042\|Ga0318545_10359297	Not Available	525	Open in IMG/M
3300032043\|Ga0318556_10581425	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	584	Open in IMG/M
3300032044\|Ga0318558_10255816	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	862	Open in IMG/M
3300032051\|Ga0318532_10240248	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	643	Open in IMG/M
3300032054\|Ga0318570_10380513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	643	Open in IMG/M
3300032055\|Ga0318575_10362279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	735	Open in IMG/M
3300032059\|Ga0318533_10749893	All Organisms → cellular organisms → Bacteria	716	Open in IMG/M
3300032060\|Ga0318505_10071855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1526	Open in IMG/M
3300032063\|Ga0318504_10073785	All Organisms → cellular organisms → Bacteria	1486	Open in IMG/M
3300032063\|Ga0318504_10444030	Not Available	620	Open in IMG/M
3300032064\|Ga0318510_10128802	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	985	Open in IMG/M
3300032067\|Ga0318524_10138911	All Organisms → cellular organisms → Bacteria	1223	Open in IMG/M
3300032076\|Ga0306924_10675117	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1162	Open in IMG/M
3300032090\|Ga0318518_10324237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	790	Open in IMG/M
3300032180\|Ga0307471_100636730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1228	Open in IMG/M
3300032261\|Ga0306920_100085853	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4638	Open in IMG/M
3300032261\|Ga0306920_100109353	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4097	Open in IMG/M
3300032261\|Ga0306920_103911506	Not Available	542	Open in IMG/M
3300033289\|Ga0310914_10232699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1652	Open in IMG/M
3300033290\|Ga0318519_10105613	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1522	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	96.67%
Host-Associated	Host-Associated	3.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.67%
Plants	Host-Associated → Plants	3.33%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.33%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	88.33%
Loam	Environmental → Terrestrial → Soil → Loam	8.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	3.33%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.67%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.83%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	3.33%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	43.33%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	19.17%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	5.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	3.33%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.50%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005561	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_148	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009176	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG	Host-Associated	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010863	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (PacBio error correction)	Environmental	Open in IMG/M
3300010868	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (PacBio error correction)	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026320	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_40cm (SPAdes)	Environmental	Open in IMG/M
3300026514	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-B	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300027875	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032054	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f23	Environmental	Open in IMG/M
3300032055	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f23	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1002029171	3300000364	Soil	MRTFMIAATVVVLAVPAHAQMGHSKGGGKLGQKSDEQIAAEQQVKKNQENAYKDA
AF_2010_repII_A1DRAFT_100138824	3300000597	Forest Soil	MRTFMIAAIIAGLAVPAHAQMGSGKGGGKLGKKSDEQTAAEQQQKKNEENAYKDALK
AF_2010_repII_A1DRAFT_101442612	3300000597	Forest Soil	MIAAIIAVLAVPAHAQMGNGKGGGKLGQKSDEQTAAEQQQKKN
Ga0066388_1060043331	3300005332	Tropical Forest Soil	MRTFMIAAIIAVLAVPAHAQMGQGKGGGSGGKLGQKSDEQTATEQQQKKNEENAYK
Ga0008090_100735272	3300005363	Tropical Rainforest Soil	MRAFTIAAMIALLTVPAHAQMGRSKGGGGKLGQKSDEQIAAEQQKKK
Ga0008090_100978042	3300005363	Tropical Rainforest Soil	MRAFTIAAIIAVLTLPAHAQMGRSKGGGGKLGQKSDEQIAAEQQKKKNEENAYKDA
Ga0008090_101336562	3300005363	Tropical Rainforest Soil	MRTFMIAAIVAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYKDALKKIP
Ga0070697_1004232272	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MIAAIIAVLAVPAHAQMGQGKGGGGKLGQKSDEQTAAEQQQKKNEENAYKDALKKIPD
Ga0070704_1005733842	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MRTFMIAAIIAMLAVPAHAQMGQGKGGGSGGKLGQKSDEQTA
Ga0066699_107083791	3300005561	Soil	MRAFTIAAIIAVLAVPANAQMGHSKSGGGKLGKKSDEQIA
Ga0066903_1016264171	3300005764	Tropical Forest Soil	MRAFTIAVIIAVLAVPAHAQMGRGKGGGKLGQKSD
Ga0066903_1048446241	3300005764	Tropical Forest Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQ
Ga0066652_1015331831	3300006046	Soil	VCAETTEMRTFMIAATVVVLAVPAHAQMGHSKGGGKLGQKSDEQIAAEQQIKKNQENAYK
Ga0066665_114494671	3300006796	Soil	VCTETTEMRTFMIAATVVVLAVPAHAQMGHSKGGGKLGQKS
Ga0075433_110756782	3300006852	Populus Rhizosphere	MRAFTIAAIIAVLAVPANAQNVPILGGDGGRGKLGKKSDEQIAAEQ
Ga0075425_1014616151	3300006854	Populus Rhizosphere	MIAAIIAVLAVPANAQNIPILGGDGGRGKLGKKSDEQIAAEQ
Ga0075423_131151361	3300009162	Populus Rhizosphere	MIAAIIAMLAVPAHAQMGQGKGGGSGGKLGQKSDEQTATEQQQKKNEENAYKDAL
Ga0105242_103014452	3300009176	Miscanthus Rhizosphere	MRAFTIAAIIAALAVPANAQNIPILGGDGGRGKLGKKSDEQIAAEQQQKKNEDNAYKDAL
Ga0126382_116222571	3300010047	Tropical Forest Soil	MRAFTIAVIIAVLAVPAHAQMGRGKGGGKLGQKSDDQIAAQQQKKKNEENAYKDAAQENSRCA
Ga0126373_109942272	3300010048	Tropical Forest Soil	MRTFMIAAIVAGLAVPAHAQMGQGKGGGSGGKLGQKSDEQTAVEQQQKKNE
Ga0126372_108942092	3300010360	Tropical Forest Soil	MRTFMIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQT
Ga0126379_111049263	3300010366	Tropical Forest Soil	MRTFMIAAIVAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEE
Ga0126379_129485751	3300010366	Tropical Forest Soil	MIAAIIAVLAVPAHAQMGQGKGGGSGGKLGQKSDEQT
Ga0126379_129623822	3300010366	Tropical Forest Soil	MRTFMIAAIIAVLAVPAHAQMGNGKGGGKLGQKKRRAN
Ga0126381_1001435827	3300010376	Tropical Forest Soil	MRAFTIAAIIAVLTVPANAQNLNLMGGHGSDGKLGKKSDEQIAAEQQEKKNQENAYK
Ga0126383_125413952	3300010398	Tropical Forest Soil	MRTFMIAAIIAGLAVPAHAQMGSGKGGGKLGKKSDEQTAAEQQQKKNEENAYKDALKKIP
Ga0126383_128954433	3300010398	Tropical Forest Soil	MRTFMIAAIIAVLAVPAHAQMGHGKGDGKLGQKSDEQTAVEQQQKKNE
Ga0124850_10516651	3300010863	Tropical Forest Soil	MRTFMIAAIIAVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKDNDENAYKDALKKI
Ga0124844_10597031	3300010868	Tropical Forest Soil	MIAAIIAGLAVPAHAQIGHGKGGGKLGQKSDEQTAV
Ga0124844_10673163	3300010868	Tropical Forest Soil	MIAAIIAGLAVPAHAQIGHGKGGGKLGQKSDEQTA
Ga0137362_104534413	3300012205	Vadose Zone Soil	MLTSLRFLLLGSTEMRTLTIAAIIAVLAVPAHAQTGYSKSGGKLGQKSDEQIATEQQQKKNEENAYKDAI
Ga0137376_110729363	3300012208	Vadose Zone Soil	MRTFTRAAIITVLSMPAHAEKGYSKSGGKLGQKSDEQIAAERQKKKNEENEYNDALKKI
Ga0137360_104292412	3300012361	Vadose Zone Soil	MRTLTIAAIIAVLAVPAHAQTGYSKSGGKLGQKSDEQIATEQQQKKNEENAYKDAI
Ga0137358_102113241	3300012582	Vadose Zone Soil	MLAVPAHAQMGQGKGGGKLGKKSDEQTAVEQQQKKNEENAY
Ga0164300_112038552	3300012951	Soil	MRAFTIAAIIAVLAVPAHAQTGYSKSGGKLGQKSDEQIATEQQQRKNEENAYKDAIKK
Ga0164305_120560292	3300012989	Soil	MLAVPAHAQMGQGKGGGSGGKLGQKSDEQTATEQQQKKNEENAYK
Ga0182041_106885482	3300016294	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEEN
Ga0182033_111441952	3300016319	Soil	MRTFMIAAIIVGLAAPAHAQMGHGKGGGKLGQKSDEQTAVEQQQKKNEENAYKDALKKI
Ga0182035_113061512	3300016341	Soil	MRTFMIAAIIVGLAAPAHAQMGHGKGGGKLGQKSD
Ga0182035_117574902	3300016341	Soil	MRTFMIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKK
Ga0182032_107759423	3300016357	Soil	MRTFMIAAMIAVLAVPAHAQMGPGKGGGKLGQKSGE
Ga0182034_105984722	3300016371	Soil	MRTFVIAAIIAVLAMPAHAQMGPGKGGGKLGQKSGEQTAAEQQQKKNDENT
Ga0182034_108945141	3300016371	Soil	MRTFMIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYK
Ga0182040_104194951	3300016387	Soil	MRAFTIAAIIAVRTLPAHAQMGRSKGGGGKLGQKSDEQIAAE
Ga0182037_106387671	3300016404	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKN
Ga0182039_107098741	3300016422	Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNN
Ga0182039_108828831	3300016422	Soil	MIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNN
Ga0182038_106473552	3300016445	Soil	MRTFVIAAIIAVLAMPAHAQMGPGKGGGKLGQKSGEQTAAEQQQKKN
Ga0182038_111502452	3300016445	Soil	MRTFMIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKN
Ga0210406_108506231	3300021168	Soil	MRTYTIAAIIAVLAVPAHAQTGYSKSGGKLGQKSDEQIATEQQQKKNEENAYKDAIKK
Ga0207693_105310432	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRAFTIAAIIAALAVPANAQNIPILGGDGGRGKLGKKSDEQIAAEQQQKKNEDNAY
Ga0209647_12686271	3300026319	Grasslands Soil	MRAFTIAAIIAVLAVPANAQMGHSKSGGGKLGKKSDEQIAAEQQKKKNEENAY
Ga0209131_10277991	3300026320	Grasslands Soil	MRAFTIAAIIAVLAVPANAQMGHSKSGGGKLGKKSDEQIAAEQQ
Ga0257168_11486081	3300026514	Soil	MRTFMIAAIITMLAVPAHAQMGQGKGGGSGGKLGQKSDEQT
Ga0209076_11376961	3300027643	Vadose Zone Soil	MRTFMIAAIITMLAVPAHAQMGQGKGGGSGGKLGQKS
Ga0209465_101370801	3300027874	Tropical Forest Soil	MRTFMIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEE
Ga0209283_101024471	3300027875	Vadose Zone Soil	MIAAIIAVLAVPAHAQTGHGKGGGGKLGQKSDEQTAVEQQQKK
Ga0170824_1089975311	3300031231	Forest Soil	MRTFTIAAIIAVLAVPAHAQTGYSKSGGKLGQKSDEQI
Ga0170824_1238813632	3300031231	Forest Soil	MRAFTIAAIIAVLAVPANAQMGSSNGGSVPLVGGDGGRGKLGKKSDEQIA
Ga0318516_102336631	3300031543	Soil	MRTFMIAAIVAGLAVPAHAQMGHGKGGGKLGQKSDEQTAAEQQQKKNEENAYKDALKKI
Ga0318516_107962012	3300031543	Soil	MRTFVIAAIIAVLAMPAHAQMGPGKGGGKLGQKSGEQTA
Ga0318541_103498341	3300031545	Soil	MIAAIVAGLAVPAHAQMGHGKGGGKLGQKSDEQTAAEQQQKKNEENAY
Ga0318538_101890293	3300031546	Soil	MIAAIIVVLAVPAHAQMGHGKGGGKLGQKSDEQTAVE
Ga0310915_112252641	3300031573	Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKA
Ga0318561_100528695	3300031679	Soil	MRTFMIAAIIAGLAVPAHAQMGHDKGGGKLGQKSDEQTAAERQQKKNEENAY
Ga0318572_103673242	3300031681	Soil	LLGRKHVRPGLAVPAHAQMGHGKGGGKLGQKSDEQTAAEQQQKKNEENAY
Ga0318572_109480281	3300031681	Soil	MRTFVIAAIIAVLAMPAHAQMGPGKGGGKLGQKSGEQTAAEQ
Ga0318560_105372201	3300031682	Soil	MRTFMIAAIIVVLAVPAHAQMGHGKGGGKLGQKSDEQTAVEQQQKKNEENAY
Ga0318496_101039083	3300031713	Soil	MIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNNDENAYKDALKKI
Ga0306918_106110701	3300031744	Soil	MRTFIIAAIITVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKDNDENAYKD
Ga0318492_102714651	3300031748	Soil	MRTFMIAAIVAGLAVPAHAQMGHGKGGGKLGQKSDEQTAAEQQQKKNEENAYK
Ga0318521_103201722	3300031770	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAY
Ga0318521_103924471	3300031770	Soil	MIAAIIAVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKDN
Ga0318521_107892802	3300031770	Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNNDENAY
Ga0318546_102521641	3300031771	Soil	MRTFMIAAMIAVLAVPAHAQMGPGKGGGKLGQKSGEQTAAEQQQKKNDENTYKDAL
Ga0318546_105062702	3300031771	Soil	MRTFMIAAIVAGLAVPAHAQMGHGKGGGKLGQKSDEQTAAE
Ga0318543_104940241	3300031777	Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNND
Ga0318552_101939091	3300031782	Soil	MRTFMIAAIIAGLAVPAHAQMGHDKGGGKLGQKSDEQT
Ga0318548_101649382	3300031793	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYKDALKKIPD
Ga0318576_101930182	3300031796	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYKDA
Ga0318497_101437992	3300031805	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYK
Ga0310917_102368033	3300031833	Soil	MRTFMIAAMIAVLAVPAHAQMGPGKGGGKLGQKSHEQ
Ga0318517_102191742	3300031835	Soil	LLGRKHVRPGLAVPAHAQMGHGKGGGKLGQKSDEQTAAEQQQKKNEENAYK
Ga0318522_102805771	3300031894	Soil	MRTFMIAAIIAGLAVPAHAQMGHDKGGGKLGQKSDEQTA
Ga0318551_102990482	3300031896	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQLM
Ga0318520_107664942	3300031897	Soil	MRTFMIAAIIAVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKNNDEN
Ga0306923_103861423	3300031910	Soil	MIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNNE
Ga0306923_107015431	3300031910	Soil	MRTFMIAAIVAGLAVPAHAQIGHGKGGGKLGQKSDEQTAAEQQ
Ga0306923_110164251	3300031910	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYKD
Ga0306921_115215172	3300031912	Soil	MRTFMIAAIVAGLAVPAHAQMGHGKGGGKLGQKSDEQTAAEQQQKKNEENAYKDALKKIP
Ga0310912_107749961	3300031941	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQK
Ga0310916_113156372	3300031942	Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQK
Ga0310913_104600823	3300031945	Soil	MIAAIIAVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKDND
Ga0310910_105598391	3300031946	Soil	MVEMRAFAIAAIIAVLTVPAHAQNLNLMGGHGGGGKLGQK
Ga0306926_105798123	3300031954	Soil	MIAAIIAVLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKN
Ga0318531_103520421	3300031981	Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNNDENAYKDALKKIP
Ga0310911_103631681	3300032035	Soil	MRTFIIAAIITVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKNNDEN
Ga0318559_103938931	3300032039	Soil	MRTFVIAAIIAVLAVPAHAQMGPGKGGGKLGQKSGEQTAAEQQQKKNDENTYKDAL
Ga0318549_105813121	3300032041	Soil	MRAFTIAAIIAVLTLPAHAQMGRSKGGGGKLVQKSDEQIAAEQQKKKNEENAYKD
Ga0318545_103592972	3300032042	Soil	MRTFMIAAIIVVLAVPAHAQMGHGKGGGKLGQKSDEQTAVEQQQKKN
Ga0318556_105814251	3300032043	Soil	MIAAIIAVLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEE
Ga0318558_102558161	3300032044	Soil	MIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEE
Ga0318532_102402482	3300032051	Soil	MRTFVIAAIIAVLAVPAHAQMGPGKGGGKLGQKSGEQTAAEQQQKKNDENTY
Ga0318570_103805132	3300032054	Soil	MRTFMIAAIIVVLAVPAHAQMGHGKGGGKLGQKSDEQTAVEQQ
Ga0318575_103622791	3300032055	Soil	MIAAIIAVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKDNDENAYKD
Ga0318533_107498931	3300032059	Soil	MRTFMIAAIIAGLAVPAHAQMGHDKGGGKLGQKSDEQTAAERQQK
Ga0318505_100718552	3300032060	Soil	LLGRKHVRPGLAVPAHAQMGHGKGGGKLGQKSDEQTAAEQQQKKNEENAYKDALKKIP
Ga0318504_100737851	3300032063	Soil	MIAAIIAGLAVPVHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYKDA
Ga0318504_104440302	3300032063	Soil	MRAFMIAAIITVLAVPANAQMGGHSKGGGKLGQKSDEQLAAEQQKKKNEENAYK
Ga0318510_101288022	3300032064	Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNNDEN
Ga0318524_101389113	3300032067	Soil	MRTFMIAAIIAVLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQ
Ga0306924_106751172	3300032076	Soil	MIAAIIAVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKDNDEN
Ga0318518_103242371	3300032090	Soil	MIAAIIVVLAVPAHAQMGHGKGGGKLGQKSDEQTAVEQQQKKNEENAYKDALKKI
Ga0318540_101828041	3300032094	Soil	MRAFTIAAIIAVLTLPAHAQMGRSKGGGGKLGQKSDEQIAAE
Ga0307471_1006367302	3300032180	Hardwood Forest Soil	MRTFMIAAIIAVLAVPAHAQMGHSKGGSKLGQKSDEQIAA
Ga0306920_1000858531	3300032261	Soil	MRTFMIAAIIAVLAVPAYAQMGHSKGGGKLGQKSDEQKAAEQQKKDND
Ga0306920_1001093536	3300032261	Soil	MIAAIIAVLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYKD
Ga0306920_1039115062	3300032261	Soil	MRTFMIAAIIAGLAVPAHAQMGNGKGGGKLGKKSDEQTAAEQQQKKNEENAYKD
Ga0310914_102326991	3300033289	Soil	MIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKAAEQQKKNNDENAYKD
Ga0318519_101056131	3300033290	Soil	MIAAIIAVLAVPAHAQMGHSKGGGKLGQKSDEQKA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073314

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences