Metagenome Family F073401

Basic Information
Family ID	F073401
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	67 residues
Representative Sequence	LDGSKRSVMHWILATFLLCLSCSSRRIARELGVHGRTSYRWCWWLRNAALSYEMERQLEGTVEADDLYH
Number of Associated Samples	79
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	15.38 %
% of genes near scaffold ends (potentially truncated)	8.33 %
% of genes from short scaffolds (< 2000 bps)	9.17 %
Associated GOLD sequencing projects	78
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.40

Most Common Taxonomy
Group	Unclassified (90.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (30.833 % of family members)
Environment Ontology (ENVO)	Unclassified (32.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.667 % of family members)

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 63.92% β-sheet: 0.00% Coil/Unstructured: 36.08%
Feature Viewer

Powered by Feature Viewer

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF12762	DDE_Tnp_IS1595	9.17
PF02371	Transposase_20	5.00
PF12760	Zn_Tnp_IS1595	3.33
PF13613	HTH_Tnp_4	2.50
PF01609	DDE_Tnp_1	1.67
PF04014	MazE_antitoxin	1.67
PF04392	ABC_sub_bind	0.83
PF13412	HTH_24	0.83
PF00856	SET	0.83
PF10370	DUF2437	0.83
PF13586	DDE_Tnp_1_2	0.83
PF01656	CbiA	0.83
PF15738	YafQ_toxin	0.83
PF13714	PEP_mutase	0.83
PF13401	AAA_22	0.83
PF00589	Phage_integrase	0.83
PF00239	Resolvase	0.83
PF00076	RRM_1	0.83
PF02796	HTH_7	0.83
PF03706	LPG_synthase_TM	0.83
PF01610	DDE_Tnp_ISL3	0.83
PF01548	DEDD_Tnp_IS110	0.83
PF13340	DUF4096	0.83
PF03400	DDE_Tnp_IS1	0.83
PF01844	HNH	0.83
PF13495	Phage_int_SAM_4	0.83
PF00561	Abhydrolase_1	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3547	Transposase	Mobilome: prophages, transposons [X]	5.83
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	1.67
COG3293	Transposase	Mobilome: prophages, transposons [X]	1.67
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	1.67
COG5421	Transposase	Mobilome: prophages, transposons [X]	1.67
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	1.67
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	1.67
COG0392	Predicted membrane flippase AglD2/YbhN, UPF0104 family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1662	Transposase and inactivated derivatives, IS1 family	Mobilome: prophages, transposons [X]	0.83
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.83
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83
COG3464	Transposase	Mobilome: prophages, transposons [X]	0.83

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
All Organisms	root	All Organisms	10.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
cellular organisms	root	All Organisms → cellular organisms	10.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	10.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	7.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	7.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	90.00 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	7.50 %

Scaffold	Taxonomy	Length	IMG/M Link
3300005468\|Ga0070707_100666120	All Organisms → cellular organisms → Bacteria	1003	Open in IMG/M
3300005985\|Ga0081539_10316186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	666	Open in IMG/M
3300006844\|Ga0075428_100037599	All Organisms → cellular organisms → Bacteria	5327	Open in IMG/M
3300006847\|Ga0075431_100882641	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300009100\|Ga0075418_12065538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	621	Open in IMG/M
3300010043\|Ga0126380_11412210	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	612	Open in IMG/M
3300010047\|Ga0126382_10453933	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1017	Open in IMG/M
3300010362\|Ga0126377_10513657	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1232	Open in IMG/M
3300010398\|Ga0126383_10115851	Not Available	2430	Open in IMG/M
3300012206\|Ga0137380_11056684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	693	Open in IMG/M
3300012359\|Ga0137385_11274406	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	597	Open in IMG/M
3300012930\|Ga0137407_11188348	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	724	Open in IMG/M
3300012971\|Ga0126369_12477598	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	604	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	73.33%
Host-Associated	Host-Associated	26.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	70.83%
Plants	Host-Associated → Plants	26.67%
Aquatic	Environmental → Aquatic	2.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	70.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	20.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Sediment	Environmental → Aquatic → Sediment	1.67%
Freshwater	Environmental → Aquatic → Freshwater	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	65.00%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	20.00%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.17%
Loam	Environmental → Terrestrial → Soil → Loam	2.50%
Sand	Environmental → Terrestrial → Soil → Sand	2.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.67%
Lake	Environmental → Aquatic → Freshwater → Lake	0.83%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	52.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	20.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	2.50%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	2.50%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.67%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	30.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	17.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	2.50%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	1.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.67%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.67%
Sediment	Environmental → Aquatic → Freshwater → Lake → Sediment → Sediment	0.83%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.83%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005186	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005446	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_135	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300005985	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2	Host-Associated	Open in IMG/M
3300006034	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_105	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300009803	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_40_50	Environmental	Open in IMG/M
3300009810	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_20_30	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010326	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaG	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010364	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09212015	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300011416	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT551_2	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300012359	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_80_16 metaG	Environmental	Open in IMG/M
3300012360	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012975	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_11112015	Environmental	Open in IMG/M
3300013296	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG	Host-Associated	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300026023	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026535	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT150D86 (HiSeq)	Environmental	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300027954	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S3_50_60 (SPAdes)	Environmental	Open in IMG/M
3300028592	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Cellulose_Day30	Environmental	Open in IMG/M
3300030006	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300032397	Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G11_0	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1031329562	3300000955	Soil	LLHQSKRSLAHWILATFLLCLACSSRRIARELGVHIRTSYRWCWWLRNAALSYEMERQLEGTVEADD
JGI1027J12803_1035073794	3300000955	Soil	SLVHWILATFLLCLSCSSRRIARELGVHILTSYRWCWWLRNAALSYEVDRPLAFR*
JGI1027J12803_1095149102	3300000955	Soil	NDLTEPLLHRSTRPLAYWILATFLLCLACSSRCIAREVGVHIRTSSCWSWWLRNAALSYEMHRQLE
Ga0066676_108177621	3300005186	Soil	LPYWILATFLLCLSCSSRRIARELGVHISTSYRWCWWLRNTAISYERTGCGFCKWA*
Ga0070708_1008682572	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MSEAHHTIKRDKLNQSKRPLAYWILATFLLCLACSSRRIAREVGVHVRTSYRWCWWLRNAALSYEMGRQLAGTVEADDLYHT
Ga0066686_105062901	3300005446	Soil	LDGSKRSVMHWILATFLLCLSCASRRIAKELGVHVRTGYRWCWWLRNAALSYELGRQ*
Ga0070707_1006661201	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSEAHHTIKRDKLNQSKRPLAYWILATFLLCLACSSRRIAREVGVHVRTSYRWCWWLRNAALSYEMGRQLAGTVEADDLYHTAGNKGQAKGGGKK
Ga0066705_105662992	3300005569	Soil	MHWILATFLLCLSCSSRRITRELGVHMRTGYRWCWWLRNAALSYEMERQLEGTVEADDLYHTAGHKESREMLGVTAKLR*
Ga0066903_1001118084	3300005764	Tropical Forest Soil	MFLSRYSTLLHRNQRSLSHWILATFLVCLACSSRRIAREVGIHIRTSYRWCWWLRNAALSYEMQRQLD
Ga0068858_1022187811	3300005842	Switchgrass Rhizosphere	DTLLHRSQRSLPYWILAAFLLCLACSSRCIARELGIHIRTSYRWCWWLRNAALSYEMERQVEGTVEADDL*
Ga0081540_100729811	3300005983	Tabebuia Heterophylla Rhizosphere	MLATFLLCLSCSSRRIAREVGVHVRTSYRWCWWLRNAALSYEIGRQLDGTVEADDLYHTAGHKGQAKQGGTKS*
Ga0081539_103161861	3300005985	Tabebuia Heterophylla Rhizosphere	LCLSCASRRVAKELGGHIRTGYQWCWWLRNAALSYEMGRQLAGTVEADDMP*
Ga0066656_104333341	3300006034	Soil	LLDGSKRSVMHWILATFLLCLSCVSRRIAKELGVHIRTGYRWCWWLRNAALSYELGRQ*
Ga0079222_107687062	3300006755	Agricultural Soil	LLCLSCSSRRIARELGVHIRTGYRWCWWLRNAALSYEIGRRLKGTVEADELYHTAGHKGQAKVAMLNQRSRASRA*
Ga0075428_1000375994	3300006844	Populus Rhizosphere	MPWMLATFLLCLSCSSRRIAREVGVHMRTGYRWCWWLRNAALSYEMERQLGGTVEADDL*
Ga0075421_1011318621	3300006845	Populus Rhizosphere	LHQSQRPLAYWILTTFLRCLACSSRRIAREVGIHIRTSYRWCWWLRNAALSYEMHRQLDGTVEADDLYHTGVG*
Ga0075430_1010276251	3300006846	Populus Rhizosphere	MHDSKRSLPHWILATFLLCLACSPWRLAREVGLHDRTSYRWCWWPRNVALSYKMLRQLVGTV
Ga0075430_1017264732	3300006846	Populus Rhizosphere	CLACSSRRIARELGIHIRTSYRWCWWLRNAALSYEMERQVEGTVEAVM*
Ga0075431_1000849972	3300006847	Populus Rhizosphere	MPWILATFLLCLSCSSRRIAREVGVHMRTGYRWCWWLRNAALSYEMERQLGGTVEADDL*
Ga0075431_1008826413	3300006847	Populus Rhizosphere	VAYWILATFLLCLSCSSRRIARELGVQSRTSYRWCWWLRNAAVSYETDRQLEGTVEADELYHTAGQKGQAKQGGTK
Ga0075433_108345871	3300006852	Populus Rhizosphere	MLATFLLCLACSSRRIAREVGVHIRTSYRWRWWLRSAALSYEMERQLEGTVEADDLYHTAGQKGQAKQ
Ga0075420_1008663843	3300006853	Populus Rhizosphere	MLATFLLCLACSSRRIAREVGVHIRTSYRWRWWLRSAALSYEMERQLEGTVEADDLYHTAGQKGQA
Ga0075419_109201123	3300006969	Populus Rhizosphere	MLATFLLCLACSSRRIAREVGVHIRTSYRWCWWLRNAALSYELERQLEGTVEADDLYHTAGQKGQ
Ga0099793_103588032	3300007258	Vadose Zone Soil	LHQSKRPLSYWILATFLLCLACSSRRIAREVGVHISTSYRWCWWLRNAALSYEMERQLEETVEADELYHTAGNK
Ga0099830_108420082	3300009088	Vadose Zone Soil	LHQSQRPLAYWIFATFLLCLACSSRRIAREVGVHIRTSYRWCWGLRHAALSYEMERQLAGTVEADDLYHTAGQKGQAKQGGK
Ga0099827_103945162	3300009090	Vadose Zone Soil	MRGSGQKTPHWILATFLLCLACSSRRIAREVGIHIRTSYRWCWWLRNAALSYEMQRQLEGTVE
Ga0111539_111318312	3300009094	Populus Rhizosphere	HWILATFLLCLACSSRRIAREVGLHIRTSYRWCWWLRNAALSYEMHRQLEGTVEADDLYHTARVNRTKVRKVS*
Ga0075418_102935913	3300009100	Populus Rhizosphere	LDGSKRSMMHWMLATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYE
Ga0075418_104395273	3300009100	Populus Rhizosphere	LSYWLLATFLLCLACSSRRIARELGIHIRTSYRWCWWLRNAALSYEMERQVEGTVEAVM*
Ga0075418_120655381	3300009100	Populus Rhizosphere	MHWILATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYEIGRKLDGTGEADELYHTAGHKGQAKTGGTKSLGRKPR
Ga0075418_126446261	3300009100	Populus Rhizosphere	MGTLLDGSKRSVMHWILATFLLCLLCASRRIAWGLGVHICTGYRWCWWLRNAALSYEI
Ga0075418_128025921	3300009100	Populus Rhizosphere	MHWILATFLLCLSCSSRRIARELGVHRRTGYRWCWWLRNAALSYEMERQLAGTVEADDLY
Ga0066709_1011532134	3300009137	Grasslands Soil	LHQSKRSLPYWILATFLLCLSCSSRRIARELGVHIRTSYRWCWWLRNTALSYETDRQLAGTVEADDLYHT
Ga0114129_114768162	3300009147	Populus Rhizosphere	SVMHWILTTFLLCLACSSRRIARELGIRVHTSYRWCWWLRNTALPYETDRQVAGTVEADDMP*
Ga0111538_122956402	3300009156	Populus Rhizosphere	GSKRSVMHWILATFLLCLSCSSRRIARELGVHLRTSYRWCWWLRNAALSYEAHRQLAGTVEADDMP*
Ga0111538_128914531	3300009156	Populus Rhizosphere	LDGSKRSLAHWILATFLLCLACSSRRIAREVGVHVRTSYRWCWWLRNAALSYEMHRQLEGTVEADDLYHTAGNK
Ga0075423_100451436	3300009162	Populus Rhizosphere	LLHQTQRSLSHWILATFLLCLACSSRRIAREVGLHIRTSYRWCWWLRNAALSYEMHRQLEGTVEADD
Ga0075423_115847072	3300009162	Populus Rhizosphere	LDGSKRSLAHWILATFLLCLACSSRRIAREVGVHVRTSYRWCWWLRNAALSYEMERQLEGTVEADDLYHT
Ga0126374_104021341	3300009792	Tropical Forest Soil	ILATFLLCLACSSRRIARELGVHLRTGYRWCWWLRNAAMSYEMGRQVEGTVEADDL*
Ga0105065_10424012	3300009803	Groundwater Sand	VFNDLTKTLLSQSKRSLPHWIVATFLLCLSCSSRRTAKELGIHVSTSYRWCWWLRNAALSYELDRQLEGCVEADELYHTAG
Ga0105088_11165011	3300009810	Groundwater Sand	MLAQSKRSLPHWILATFLLCLSCSSRRIARELGVHIRTSYRWCWWLRNAAVSYETDRHVEGT
Ga0126380_106944551	3300010043	Tropical Forest Soil	LCLACSSRRIARELGVHVRTSYRWCWWLRNAALAYEMHRQLEGTVEADDLYHTAGNKGQAKGGGKKSLGRQPCG
Ga0126380_114122101	3300010043	Tropical Forest Soil	MRSLVYWILATFLLCLSCSSRRIARELGMHGRTSYRWCWWLRNTAISYEADRQLAGIVEADDLYHTAGQKGQAKHGGKKALG
Ga0126380_116763951	3300010043	Tropical Forest Soil	LDGSKRSVMHWILATFLLCLSCSSRRIAREVGVHMRTGYRWCWWLRNAALSYEMTRQL
Ga0126384_100328831	3300010046	Tropical Forest Soil	LDGSKRLVMHWILATFLLCLSCASQRIAKELGGHVRTGYRWGWWLRNAALTYELGRQLAGTVEADD
Ga0126384_112022641	3300010046	Tropical Forest Soil	LRIEFNDLTGTLLDGSKRSLMHWILATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYEIGRQLAGTVEADD
Ga0126384_115373531	3300010046	Tropical Forest Soil	VYWILATFLLCLSCSSRRIARELGIHSRTSYRWCWWLRNTAVSYETDRQLEGTV
Ga0126384_117830141	3300010046	Tropical Forest Soil	HWILAAFLLCLSCSSRRIARELGVHGRTSYRWCWWLRNAALSYEMERQLAGTVEADELYHTAGQKGQV*
Ga0126384_119148091	3300010046	Tropical Forest Soil	LDGSKRSVMHWIFATFLLCLSCSSHRIAREVGVHIRTSYRWCWWLRNAALSYEMERQLAGTVEADDLYHTAGQKGQAKQG
Ga0126384_121252311	3300010046	Tropical Forest Soil	MRSVMHWILATFLLCLACSSRRVAKELGVHIRTSYRWCWGLRNAAISYETDRQLEGTVEADDLYHTAGQKG*
Ga0126384_122029831	3300010046	Tropical Forest Soil	LDGSKRSVMHWILATFLLCLSCSSRRIARELGVHGRTSYRWCWWLRNAALSYEMERQLEGTVEADDLYH
Ga0126382_104539333	3300010047	Tropical Forest Soil	LDGSKRSVMHWILATFLLCLSCSSRRITKELGVHVRTGYRWCWWLRNAALSYEMERQLEGTVEADDLYHTAG
Ga0126382_105538802	3300010047	Tropical Forest Soil	LHQSQRPLAYWILATFLVCLACSSRRIAREVGVHVRTSYRWCWWLRNAALSYEMQRQLEGTVEADD
Ga0134065_103032362	3300010326	Grasslands Soil	MMHQSKRSLPHWVLATFLLCLACSSRRMAREVGVHIRTSSRWCWWLRNAALSYEMHRHLEGTVAADDLYHPAGNKGQAKQGGK
Ga0126370_103656651	3300010358	Tropical Forest Soil	MHWMLATFLLCLACSSRRVAKELGVHIRTSYRWCWWLRNAALSYEMGRQLEGTVEADDLSHTAGQKGQAPQGGKKAL
Ga0126376_102598273	3300010359	Tropical Forest Soil	LLLCLACASRRIARELGIPVRTGYRWCWWLRNAAVSYAMHRQLAGTVEADALYQTAGNKGQAKQGGKKALGHRPRGR
Ga0126376_118693072	3300010359	Tropical Forest Soil	VYWILTTFLLCLACSSRRIAREVGVHIRTSYRWCWWLRNAALFYEMQRQVDGTVEADDLYHTAGQKGQAKHGGKK
Ga0126376_119529671	3300010359	Tropical Forest Soil	TLFHRRQRSLADWSLATFLWCLSCSSRRIARELGGQSRTSYRWGWRLRHAAVS*
Ga0126376_130857411	3300010359	Tropical Forest Soil	LDGSKRSVMHWILATFLLCLSCSSRRIAREVGVHMRTGYRWCWWLRNAALSYEMTRQLEGTVEADELYHTAGQKGQATQG
Ga0126378_133266361	3300010361	Tropical Forest Soil	LLLCLACASRRIARELGIPVRTGYRWCWWLRNAAVSYAIHRQLAGTVEADA
Ga0126377_105051471	3300010362	Tropical Forest Soil	MPTGTLLDGSKRSLMHWMLATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNATLSYEIGRQLDG
Ga0126377_105136574	3300010362	Tropical Forest Soil	LDGSKRSVMHWILATFLLCLSCSSRRIARELGVQVRTGYRWCWWLRNAALSYEIGRKLAGTVEADDLSHTAGHKGQA
Ga0126377_106586061	3300010362	Tropical Forest Soil	WIFATFLLCLSCSSHRIAREVGVHIRTSYRWCWWLRNASLSYEMERQLEGTVEADDMP*
Ga0126377_108516801	3300010362	Tropical Forest Soil	MLATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYEIGRQLDGTVEADDLSQTAGNKGQAKQGGKKALGR
Ga0126377_124340562	3300010362	Tropical Forest Soil	LDGSKRSVMHWMLATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYEMARQLEGTVEA
Ga0134066_103259091	3300010364	Grasslands Soil	MMHQSKRSLPHWVLATFLLCLACSSRRMAREVGVHIRTSSRWCWWLRNAALSYEMHRHLEGTVAADDLYHPAGNKGQAK
Ga0126379_108482461	3300010366	Tropical Forest Soil	LDGSKRSLVHWLLATFLLCLACSSRRIAREVGVHVQTSYRWCWGLRNAALSY
Ga0126379_112515971	3300010366	Tropical Forest Soil	MLATFLLCLSCASRRIARERGVHSRSSYRWGWWLRNTAVSYEMHRQLDGTVEADDL
Ga0126381_1034111011	3300010376	Tropical Forest Soil	LDGSKRSVMHWMLATFLLCLACSSRRVAKELGVHIRTSYRWCWWLRNAALSYEMGRKLAGTVEADDLYHTAGH
Ga0126383_101158512	3300010398	Tropical Forest Soil	LDGSNRSLRHWILATFLLCLSCASRRIAKEVGVHIRTSYRWCWWLRNAALSYEVQRQVDGTVEADDMP*
Ga0126383_102086151	3300010398	Tropical Forest Soil	LDGSKRSVMHWILATFLLCLSCSSRRIAREVGVHGRTGYRWCWWLRNAALSYEVGRKLAGTVE
Ga0126383_115445941	3300010398	Tropical Forest Soil	LDGSKRSVMHWILATFLLCLSCASRRIARELGVHVRTGYRWCWWLRNAA
Ga0137422_11155971	3300011416	Soil	LPHWILATFLLCLACSSRRIAREIGVHIRTSYRWCWWLRNTALSYEMHRQLEGTVEADDLYCVFHAKAATDSR*
Ga0137388_103542453	3300012189	Vadose Zone Soil	LHWSKRPLSYWILATFLLCLACSSRRIAREVGVQSRTSYRWCWWLRNTAMSYETDRRLEGTVEADDLYHTAGSKGQA
Ga0137399_115517401	3300012203	Vadose Zone Soil	MHRSKRPLSYWILATFLLCLSCSSRRIARELGIHSRTSYRWCWWLRNTAVSYETDRRLEGTVEADDLYHTAGSKGQAK
Ga0137380_105804331	3300012206	Vadose Zone Soil	MLHQSRRSLPHWILATFLLCLACSSRRIAREVGVHIRTSYRWCWWLRNAALSYEMQRQLEGTVEADDLYHTAGNKGQAKQGGKKALG
Ga0137380_110566841	3300012206	Vadose Zone Soil	LAQSKRSLGHWILATFLLCLSCSSRRIARELGVHIPTSYRWCWWLRNTAISYETDRQVEGTVEADELYHIAGSKGQAKHGGTKHLGR
Ga0137377_119205201	3300012211	Vadose Zone Soil	MLHQSKRSLPHWILATFLLCLACSSRRIAREVGVHIRTSYRWCWWLRNAALSYEMERQLEGTVEADELYHTAGNKGQAKQGGKKAL
Ga0137384_107543232	3300012357	Vadose Zone Soil	MLHQSKRSLPHWILATFLLCLACSSRRIAREVGVHIRTSYRWCWWLRNAALSYEMQRQLEGTVEADE
Ga0137385_100834064	3300012359	Vadose Zone Soil	MSNDLTGTLLDGSKRSLAHWILATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYEIGR
Ga0137385_112288532	3300012359	Vadose Zone Soil	MLHQSRRSLPHWILATFLLCLACSSRRIAREVGVHIRTSYRWCWWLRNAALSYEMQRQLEGTVEADE
Ga0137385_112744061	3300012359	Vadose Zone Soil	LCLACSSRRIARELGIHIRTSYRWCWWLRNAALSYEMQRQLDGTVEADDLYHTAGNKGQAKQGGKKLLGSRARVRKKKREP
Ga0137375_113379501	3300012360	Vadose Zone Soil	MHRSKRPLSYWILATFLLCLSCSSRRIARELGVHSRTSYRWCWWLRNTAVSYETDRRLEGTVEADDLYHTA
Ga0137360_117446761	3300012361	Vadose Zone Soil	LAQSKRSLGHWILATFLLCLSCASRRIARELGVHIPTSSRWCWWLRNAALSYEMERQLEGTVEA
Ga0137397_103367581	3300012685	Vadose Zone Soil	MIETIASNTLLAQSKQSLPHWILATFLLCLSCSSRRIARELGVHIRTSYRWCWWLRNAALSYEMHRQLEGTVELDDLYH
Ga0137397_104165591	3300012685	Vadose Zone Soil	LLAQSKRSLGHWILATFLLCLACSSRRIARELGVHIRTSYRWCWWLRNAALSYEMQRQLEGTVEADDLYHTAGQ
Ga0137359_115203711	3300012923	Vadose Zone Soil	MLHQRKRSLSHWILGTFLLCLWCSSRRMARELGVHVRTGYRWCWWLRHAALSY
Ga0137359_116844431	3300012923	Vadose Zone Soil	MLAQSTWALPHGILATFRLCLSCSARRIARELGVHIRTSDHWCWWLRNAAVSYETDRHLKGTVEADEL*
Ga0137407_111883481	3300012930	Vadose Zone Soil	MHQSKRSLPHWILATFLLCLACSSRRIAREIGVHIRTSYRWCWWLRNAALSYEMERQLEGTVEADELY
Ga0126375_104011812	3300012948	Tropical Forest Soil	LCLACSSRRIAREVGVHIRTSYRWCWWLRNAALSYEMHRQLAGMVEADDLYHTAGQKGQAKHSGKKHIPMD*
Ga0126375_104504042	3300012948	Tropical Forest Soil	LHQSQRPLAYWILATFLLCLACSSRRIAREVGVHVRTSYRWCWWLRNAALSYEMQRQLEGTVE
Ga0126375_109819351	3300012948	Tropical Forest Soil	TLLDGSKRSLMHWILATFLLCLSCSSRRIAREVGVHRRTGSRWCWWLRNAALSYEMERQLAGTVEAG*
Ga0126375_121009781	3300012948	Tropical Forest Soil	TFNDLTNMLLARSKRSLPHWILATFLLCLLCSSRRIARELGVHIRTSYRWCWWLCNAAVSYETDRHLEGTIEADELYHTAG*
Ga0164302_108155001	3300012961	Soil	MMHQSKRSLPHWVLATFLLCLACSSRRMAREVGVHIRTSYRWCWWLRNAALSYEMHRQLEGTVEADDLYHTAGNK
Ga0126369_114275511	3300012971	Tropical Forest Soil	MLATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYEIGRQLDGTVEADDLSQTAGNKGQAKQGGKKA
Ga0126369_123691551	3300012971	Tropical Forest Soil	LDGSKRSVVHWILATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYEIGRKLEGTVEADDL
Ga0126369_124775981	3300012971	Tropical Forest Soil	MHWILATFLLCLSCSSRRIARELGVHGRTGYRWCWWLRNAALSYEMERQLEG
Ga0134110_103225741	3300012975	Grasslands Soil	MHWILATFLLCLSCSSRRIARELGVYGRTSYRWSWWLRNTALSYETDRQLAGTVEADDLYHTA
Ga0157374_112961361	3300013296	Miscanthus Rhizosphere	LDGSKRSLAHWRLATFLLCLACSSRRIAREVGVHVRTSYRWCWWLRNAALSYEMHRQLEGTV
Ga0163162_101064614	3300013306	Switchgrass Rhizosphere	MHGMLATFLLCLSCASRRMARELGVHGRTSYRWCWWLRNAALSSERHRQLDGTVETDDL*
Ga0157379_120626581	3300014968	Switchgrass Rhizosphere	MHWMLATFLLCLSCSSRRIARELGAQTRTGYRWCWWLRNTALSYEMERQLEGTVEADELYHTAGQKGQAKQ
Ga0137403_101280933	3300015264	Vadose Zone Soil	LLAQSKRSLAHWLLAAFLLCLSCASRRIAREVGVHIRTSYRWCWWRRNTAVSYETGRQLEGTVEADDLYHTAGNKG
Ga0132256_1001582496	3300015372	Arabidopsis Rhizosphere	NDLTGTLLDGSKRSLMHWILATFLLCLSCSSRRIAREVGVHRRTGYRWCWWLRNAALSYEMERQ*
Ga0132255_1044561671	3300015374	Arabidopsis Rhizosphere	MHGMLATFLLCLSCASRRMARELGVHGRTSYRWCWWLRNAALSSERHRQLDGTVEADDL*
Ga0132255_1050939491	3300015374	Arabidopsis Rhizosphere	LDGSKRSVMHWILATFLLCLSCSSRRIARELGVHGRTSYRWCWWLRNAALSYEMERQVEGTVEADD
Ga0182033_101833331	3300016319	Soil	LTGTLLDGSKRSVMHWILATFLLCLSCSSRRIARELGVHGRTSYRWCWWLRNAALSYEMERQLEGTVEADDMP
Ga0182033_114253801	3300016319	Soil	MHWILATFLLCLACSSRRIAKELGVHIRTGYRWCWWLRNAALSYELGRQLEGTVEADDLYHTAGNKGQAQGGGKKALGRR
Ga0207677_107911672	3300026023	Miscanthus Rhizosphere	MHGMLATFLLCLSCASRRMARELGVHGRTSYRWCWWLRNAALSSERHRQLDGTVETDDL
Ga0256867_100249162	3300026535	Soil	MMHQSKRSLLHWILATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRNAALSYEMGRKLDGTVEADDMP
Ga0209481_100186803	3300027880	Populus Rhizosphere	MPWMLATFLLCLSCSSRRIAREVGVHMRTGYRWCWWLRNAALSYEMERQLGGTVEADDL
Ga0209069_102991712	3300027915	Watersheds	MASREHLLDGSKRSVMHGILATFLLCLSCSSRRIARELGVHVRTGYRWCWWLRHA
Ga0209859_10231563	3300027954	Groundwater Sand	LHQSKRSLPHWILATFLLCLACSSRRIAREGGLHIRTSYRWCWWLRNAALSYEMHRQ
Ga0247822_106430651	3300028592	Soil	LLCLSCSSRRIAKELGVHVRTGYRWCWWLRNAALSYEIGRQLAGTVEADDMP
Ga0299907_103914092	3300030006	Soil	MHWIVDTFLLCLSCSSRRLEKELGVHIRTGYRWCWWLRNAALFYEMERRLEGTVEADDMP
Ga0307469_123089861	3300031720	Hardwood Forest Soil	GTLLDGSKRSVMHGILATFLLCLSCASRRIAKELGVHVRTGYRWCWWLRKAALSYELGRQ
Ga0310900_115402072	3300031908	Soil	CLACSSRRIARELGVHIRTGYRWCWWLRNAALSYEMKRQLEGTVEADDLYGECSGYVFMV
Ga0310906_106230352	3300032013	Soil	DTLLHRSKRPVLHWILATFLLCLSCSSRRIARELGLHSRTSYRWCWWLRNAALSYVTGCK
Ga0307415_1016859292	3300032126	Rhizosphere	TFLLCLACSSRRVAKELGVHIRTSYRWCWWLRNAALSYEMGRKLAGTVEADDLYHTAGHKGQATHGEKK
Ga0315287_126725411	3300032397	Sediment	MCIPCSCLRIRRELGIHIKTAYRWCWWFRNVALSYEVSRQLEGIVEADE
Ga0335083_107671132	3300032954	Soil	PSWILATFLVCLACSSRRIARALGVHGRTSYRWCWWLRNAALSSEMHRQLAGTVAADDL

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.40
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.40
Powered by PDBe Molstar

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073401

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign