Metagenome / Metatranscriptome Family F073620

Basic Information
Family ID	F073620
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	41 residues
Representative Sequence	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPYLES
Number of Associated Samples	100
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.17 %
% of genes near scaffold ends (potentially truncated)	90.00 %
% of genes from short scaffolds (< 2000 bps)	90.83 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.56

Most Common Taxonomy
Group	Bacteria (91.667 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (21.667 % of family members)
Environment Ontology (ENVO)	Unclassified (33.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (40.833 % of family members)

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 35.82% β-sheet: 2.99% Coil/Unstructured: 61.19%
Feature Viewer

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Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF03358	FMN_red	6.67
PF05368	NmrA	5.00
PF08281	Sigma70_r4_2	5.00
PF00106	adh_short	3.33
PF13561	adh_short_C2	2.50
PF02566	OsmC	2.50
PF13564	DoxX_2	1.67
PF02954	HTH_8	1.67
PF00248	Aldo_ket_red	1.67
PF14534	DUF4440	1.67
PF02678	Pirin	1.67
PF02738	MoCoBD_1	1.67
PF01047	MarR	1.67
PF00107	ADH_zinc_N	0.83
PF00440	TetR_N	0.83
PF13602	ADH_zinc_N_2	0.83
PF14552	Tautomerase_2	0.83
PF06537	DHOR	0.83
PF12852	Cupin_6	0.83
PF13185	GAF_2	0.83
PF13460	NAD_binding_10	0.83
PF01638	HxlR	0.83
PF08240	ADH_N	0.83
PF06779	MFS_4	0.83
PF10604	Polyketide_cyc2	0.83
PF02515	CoA_transf_3	0.83
PF01197	Ribosomal_L31	0.83
PF00561	Abhydrolase_1	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	2.50
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	2.50
COG1741	Redox-sensitive bicupin YhaK, pirin superfamily	General function prediction only [R]	1.67
COG0254	Ribosomal protein L31	Translation, ribosomal structure and biogenesis [J]	0.83
COG1733	DNA-binding transcriptional regulator, HxlR family	Transcription [K]	0.83
COG1804	Crotonobetainyl-CoA:carnitine CoA-transferase CaiB and related acyl-CoA transferases	Lipid transport and metabolism [I]	0.83
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	91.67 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	91.67 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	91.67 %
Unclassified	root	N/A	8.33 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	21.67 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	12.50 %
Unclassified	root	N/A	8.33 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	7.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %

Name	Rank	Taxonomy	Distribution
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	10.83 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	9.17 %
Unclassified	root	N/A	8.33 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	7.50 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	1.67 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	0.83 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	9.17 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	9.17 %
Unclassified	root	N/A	8.33 %
Candidatus Rokubacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	7.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.83 %
Pseudomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	9.17 %
Unclassified	root	N/A	8.33 %
unclassified Candidatus Rokubacteria	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria	7.50 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	7.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.83 %
Pseudomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae	0.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.33 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7.50 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	7.50 %
Paraburkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia	1.67 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.83 %
Pseudomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas	0.83 %
Collimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas	0.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.33 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	7.50 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
Paraburkholderia phenazinium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia phenazinium	0.83 %
unclassified Collimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas	0.83 %
Paraburkholderia solitsugae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia solitsugae	0.83 %
unclassified Pseudomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas	0.83 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	8.33 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	7.50 %
Candidatus Rokubacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	7.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1.67 %
Collimonas sp. OK412	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK412	0.83 %
Pseudomonas sp. LAMO17WK12:I5	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. LAMO17WK12:I5	0.83 %
Paraburkholderia phenazinium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia phenazinium	0.83 %
Paraburkholderia solitsugae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia solitsugae	0.83 %
Burkholderia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	0.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	0.83 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000955\|JGI1027J12803_100397414	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	617	Open in IMG/M
3300000955\|JGI1027J12803_103999553	All Organisms → cellular organisms → Bacteria → Proteobacteria	2867	Open in IMG/M
3300000955\|JGI1027J12803_109270839	All Organisms → cellular organisms → Bacteria → Acidobacteria	583	Open in IMG/M
3300001082\|JGI12664J13189_1008894	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	621	Open in IMG/M
3300001867\|JGI12627J18819_10413802	All Organisms → cellular organisms → Bacteria → Proteobacteria	549	Open in IMG/M
3300002910\|JGI25615J43890_1004186	All Organisms → cellular organisms → Bacteria	2173	Open in IMG/M
3300002912\|JGI25386J43895_10094310	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300004480\|Ga0062592_100856860	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Burkholderia	813	Open in IMG/M
3300005330\|Ga0070690_100812068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	726	Open in IMG/M
3300005347\|Ga0070668_101456901	Not Available	625	Open in IMG/M
3300005434\|Ga0070709_10802733	All Organisms → cellular organisms → Bacteria	739	Open in IMG/M
3300005538\|Ga0070731_10144887	All Organisms → cellular organisms → Bacteria	1575	Open in IMG/M
3300005538\|Ga0070731_10564707	All Organisms → cellular organisms → Bacteria	758	Open in IMG/M
3300005541\|Ga0070733_10716884	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300005586\|Ga0066691_10825573	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300005591\|Ga0070761_10919082	All Organisms → cellular organisms → Bacteria	553	Open in IMG/M
3300005843\|Ga0068860_100607939	All Organisms → cellular organisms → Bacteria	1099	Open in IMG/M
3300005921\|Ga0070766_11234100	All Organisms → cellular organisms → Bacteria	518	Open in IMG/M
3300006028\|Ga0070717_11482341	All Organisms → cellular organisms → Bacteria	616	Open in IMG/M
3300006358\|Ga0068871_100565536	All Organisms → cellular organisms → Bacteria	1031	Open in IMG/M
3300006797\|Ga0066659_11206883	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	632	Open in IMG/M
3300006844\|Ga0075428_101440083	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	722	Open in IMG/M
3300006847\|Ga0075431_101589928	Not Available	611	Open in IMG/M
3300006893\|Ga0073928_10072368	All Organisms → cellular organisms → Bacteria → Proteobacteria	2987	Open in IMG/M
3300006969\|Ga0075419_11238053	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Pseudomonadales → Pseudomonadaceae → Pseudomonas → unclassified Pseudomonas → Pseudomonas sp. LAMO17WK12:I5	552	Open in IMG/M
3300007255\|Ga0099791_10198752	All Organisms → cellular organisms → Bacteria	945	Open in IMG/M
3300009038\|Ga0099829_10586692	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300009094\|Ga0111539_12443966	All Organisms → cellular organisms → Bacteria	606	Open in IMG/M
3300009147\|Ga0114129_11018238	All Organisms → cellular organisms → Bacteria	1042	Open in IMG/M
3300009156\|Ga0111538_10153030	All Organisms → cellular organisms → Bacteria	2930	Open in IMG/M
3300009156\|Ga0111538_11459996	All Organisms → cellular organisms → Bacteria	862	Open in IMG/M
3300009162\|Ga0075423_12995721	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	517	Open in IMG/M
3300009645\|Ga0116106_1267222	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	544	Open in IMG/M
3300010046\|Ga0126384_10768872	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300010134\|Ga0127484_1069086	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300010304\|Ga0134088_10401492	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	668	Open in IMG/M
3300010400\|Ga0134122_11155105	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	771	Open in IMG/M
3300011270\|Ga0137391_10456802	All Organisms → cellular organisms → Bacteria	1086	Open in IMG/M
3300011271\|Ga0137393_11075557	All Organisms → cellular organisms → Bacteria	684	Open in IMG/M
3300012198\|Ga0137364_11071762	Not Available	607	Open in IMG/M
3300012202\|Ga0137363_11054031	All Organisms → cellular organisms → Bacteria	691	Open in IMG/M
3300012203\|Ga0137399_11539710	All Organisms → cellular organisms → Bacteria → Proteobacteria	552	Open in IMG/M
3300012203\|Ga0137399_11747324	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	510	Open in IMG/M
3300012205\|Ga0137362_10773222	All Organisms → cellular organisms → Bacteria	823	Open in IMG/M
3300012206\|Ga0137380_10278546	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1502	Open in IMG/M
3300012207\|Ga0137381_11464117	Not Available	575	Open in IMG/M
3300012211\|Ga0137377_10386915	Not Available	1336	Open in IMG/M
3300012212\|Ga0150985_121854802	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	616	Open in IMG/M
3300012351\|Ga0137386_10901185	Not Available	633	Open in IMG/M
3300012685\|Ga0137397_10334368	All Organisms → cellular organisms → Bacteria	1129	Open in IMG/M
3300012917\|Ga0137395_10885633	All Organisms → cellular organisms → Bacteria	646	Open in IMG/M
3300012922\|Ga0137394_10473576	All Organisms → cellular organisms → Bacteria → Proteobacteria	1065	Open in IMG/M
3300012930\|Ga0137407_10099041	All Organisms → cellular organisms → Bacteria	2494	Open in IMG/M
3300012930\|Ga0137407_10482592	All Organisms → cellular organisms → Bacteria → Acidobacteria	1156	Open in IMG/M
3300012930\|Ga0137407_12268927	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	519	Open in IMG/M
3300012944\|Ga0137410_10198020	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1554	Open in IMG/M
3300012944\|Ga0137410_10296433	All Organisms → cellular organisms → Bacteria	1280	Open in IMG/M
3300012944\|Ga0137410_11038465	All Organisms → cellular organisms → Bacteria → Proteobacteria	699	Open in IMG/M
3300013100\|Ga0157373_11442060	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Collimonas → unclassified Collimonas → Collimonas sp. OK412	524	Open in IMG/M
3300014168\|Ga0181534_10017933	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	3606	Open in IMG/M
3300017792\|Ga0163161_12006973	All Organisms → cellular organisms → Bacteria	515	Open in IMG/M
3300018013\|Ga0187873_1135033	All Organisms → cellular organisms → Bacteria	951	Open in IMG/M
3300018034\|Ga0187863_10265208	All Organisms → cellular organisms → Bacteria	954	Open in IMG/M
3300018044\|Ga0187890_10225305	All Organisms → cellular organisms → Bacteria	1059	Open in IMG/M
3300018052\|Ga0184638_1245832	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	617	Open in IMG/M
3300018429\|Ga0190272_12260168	All Organisms → cellular organisms → Bacteria	585	Open in IMG/M
3300020034\|Ga0193753_10001814	All Organisms → cellular organisms → Bacteria	17706	Open in IMG/M
3300020061\|Ga0193716_1066403	All Organisms → cellular organisms → Bacteria	1634	Open in IMG/M
3300020170\|Ga0179594_10007150	All Organisms → cellular organisms → Bacteria	2948	Open in IMG/M
3300020581\|Ga0210399_10009911	All Organisms → cellular organisms → Bacteria	7450	Open in IMG/M
3300020582\|Ga0210395_11302833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia solitsugae	532	Open in IMG/M
3300020583\|Ga0210401_11612516	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300021073\|Ga0210378_10214676	Not Available	733	Open in IMG/M
3300021181\|Ga0210388_11471870	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	570	Open in IMG/M
3300021407\|Ga0210383_10745637	All Organisms → cellular organisms → Bacteria	840	Open in IMG/M
3300021420\|Ga0210394_10878052	All Organisms → cellular organisms → Bacteria	781	Open in IMG/M
3300021432\|Ga0210384_11615397	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	554	Open in IMG/M
3300021433\|Ga0210391_10517745	All Organisms → cellular organisms → Bacteria → Proteobacteria	937	Open in IMG/M
3300021433\|Ga0210391_11443062	All Organisms → cellular organisms → Bacteria	528	Open in IMG/M
3300022557\|Ga0212123_10399985	All Organisms → cellular organisms → Bacteria	921	Open in IMG/M
3300022557\|Ga0212123_10567268	All Organisms → cellular organisms → Bacteria	723	Open in IMG/M
3300022694\|Ga0222623_10349542	All Organisms → cellular organisms → Bacteria	565	Open in IMG/M
3300022712\|Ga0242653_1003402	All Organisms → cellular organisms → Bacteria	1640	Open in IMG/M
3300023030\|Ga0224561_1004352	All Organisms → cellular organisms → Bacteria	1001	Open in IMG/M
3300024288\|Ga0179589_10377563	Not Available	647	Open in IMG/M
3300025910\|Ga0207684_10712755	All Organisms → cellular organisms → Bacteria	852	Open in IMG/M
3300025910\|Ga0207684_11571897	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	533	Open in IMG/M
3300025916\|Ga0207663_10219810	All Organisms → cellular organisms → Bacteria	1382	Open in IMG/M
3300025935\|Ga0207709_10252353	All Organisms → cellular organisms → Bacteria	1289	Open in IMG/M
3300026330\|Ga0209473_1093990	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	1255	Open in IMG/M
3300026361\|Ga0257176_1047182	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	675	Open in IMG/M
3300026557\|Ga0179587_10279867	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	1072	Open in IMG/M
3300026557\|Ga0179587_10766992	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300027692\|Ga0209530_1175365	All Organisms → cellular organisms → Bacteria	596	Open in IMG/M
3300027729\|Ga0209248_10033541	All Organisms → cellular organisms → Bacteria	1595	Open in IMG/M
3300027889\|Ga0209380_10104409	All Organisms → cellular organisms → Bacteria	1639	Open in IMG/M
3300027889\|Ga0209380_10454243	All Organisms → cellular organisms → Bacteria	749	Open in IMG/M
3300027895\|Ga0209624_10738580	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	648	Open in IMG/M
3300027895\|Ga0209624_10764379	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	636	Open in IMG/M
3300028047\|Ga0209526_10045196	All Organisms → cellular organisms → Bacteria → Proteobacteria	3098	Open in IMG/M
3300028381\|Ga0268264_11015811	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	836	Open in IMG/M
3300028906\|Ga0308309_10237436	All Organisms → cellular organisms → Bacteria	1519	Open in IMG/M
3300030760\|Ga0265762_1004813	All Organisms → cellular organisms → Bacteria	2416	Open in IMG/M
3300030760\|Ga0265762_1018348	All Organisms → cellular organisms → Bacteria	1277	Open in IMG/M
3300030813\|Ga0265750_1079519	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	544	Open in IMG/M
3300031234\|Ga0302325_12471091	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	621	Open in IMG/M
3300031525\|Ga0302326_12000721	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	749	Open in IMG/M
3300031715\|Ga0307476_10147749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Paraburkholderia → Paraburkholderia phenazinium	1686	Open in IMG/M
3300031715\|Ga0307476_10647638	All Organisms → cellular organisms → Bacteria	783	Open in IMG/M
3300031718\|Ga0307474_10801034	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	745	Open in IMG/M
3300031740\|Ga0307468_100592086	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium	903	Open in IMG/M
3300031740\|Ga0307468_101074937	Not Available	715	Open in IMG/M
3300031740\|Ga0307468_101462623	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300031754\|Ga0307475_10922186	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300031820\|Ga0307473_10612847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	753	Open in IMG/M
3300031823\|Ga0307478_10731817	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	828	Open in IMG/M
3300031852\|Ga0307410_10940318	All Organisms → cellular organisms → Bacteria	742	Open in IMG/M
3300031962\|Ga0307479_11364732	Not Available	668	Open in IMG/M
3300031962\|Ga0307479_11781406	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	568	Open in IMG/M
3300032180\|Ga0307471_100492244	All Organisms → cellular organisms → Bacteria → Proteobacteria	1373	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	85.83%
Host-Associated	Host-Associated	14.17%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	75.83%
Plants	Host-Associated → Plants	14.17%
Aquatic	Environmental → Aquatic	10.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.17%
Rhizosphere	Host-Associated → Plants → Rhizosphere	10.00%
Freshwater	Environmental → Aquatic → Freshwater	5.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	3.33%
Thermal Springs	Environmental → Aquatic → Thermal Springs	2.50%
Sediment	Environmental → Aquatic → Sediment	1.67%
Peat	Environmental → Terrestrial → Peat	1.67%
Roots	Host-Associated → Plants → Roots	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	60.00%
Loam	Environmental → Terrestrial → Soil → Loam	14.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.00%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	2.50%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	1.67%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	33.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	19.17%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.00%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	4.17%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	2.50%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	21.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.00%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	4.17%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	2.50%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	2.50%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.50%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.67%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.83%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	0.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300002910	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm	Environmental	Open in IMG/M
3300002912	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 10_02_2013_1_40cm	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005541	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1	Environmental	Open in IMG/M
3300005586	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009645	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_40	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010134	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Met_40_2_8_1 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012206	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_100_16 metaG	Environmental	Open in IMG/M
3300012207	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_115_16 metaG	Environmental	Open in IMG/M
3300012211	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_40_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012351	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300014168	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG	Environmental	Open in IMG/M
3300017792	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG	Host-Associated	Open in IMG/M
3300018013	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300020034	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H1c2	Environmental	Open in IMG/M
3300020061	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U2c1	Environmental	Open in IMG/M
3300020170	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300022712	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025935	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026330	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133 (SPAdes)	Environmental	Open in IMG/M
3300026361	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NL-03-B	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027692	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030760	Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030813	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031525	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_3	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031820	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.56
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.56
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NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073620

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI1027J12803_1003974142	3300000955	Soil	MKNARGLLEEFTAASFRDPKEAAAMFTEDGAFEMPYLE
JGI1027J12803_1039995531	3300000955	Soil	MSMKNAKELMLEFTASSFRDPQKAAEMFAEDGAFEMPYLASFGVPSEYK
JGI1027J12803_1092708391	3300000955	Soil	MKNARQLLEEFIATSFRHPKQAASMFTTDGTFEMPYLED
JGI12664J13189_10088941	3300001082	Forest Soil	MKNAKELMLEYTAYSFRDPKKAAEMFAENGAFELP
JGI12627J18819_104138021	3300001867	Forest Soil	MKNARQLLEEFIATSFRDPKQAASMFTADVTFEMPYLENLGFRPVDR
JGI25615J43890_10041862	3300002910	Grasslands Soil	MKNARQLLEEFIATSFRDPKQAASMFTADGTFEMPYLEDLGLQPIYRG*
JGI25386J43895_100943102	3300002912	Grasslands Soil	MKNAKELLEEFTAASFRDPKKAAEMFAEDGAFEMPYLESL
Ga0062592_1008568602	3300004480	Soil	MKNAKELLLEFTAFSLRDLEKAAAMFGEEGAFEMPYLEGLGVQGR*
Ga0070690_1008120681	3300005330	Switchgrass Rhizosphere	MKNAKELLEEYTATSFRDPKKAAEMFSEDGAFEMPYLESFGMP
Ga0070668_1014569011	3300005347	Switchgrass Rhizosphere	MKSARELLEEFTAASFRDPKKAAEMFTEHGAFEMPYLESLGV
Ga0070709_108027332	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MKNAKELMLEYTAFSFRDPKKAAEMFAEDGAFELPYLATF
Ga0070731_101448873	3300005538	Surface Soil	MKNAKELMLEYTAFSFREPKKAAEMFAEDGAFELPYLATF
Ga0070731_105647072	3300005538	Surface Soil	MKNARELMLEYTAFSFRDPKKAAEMFAEDGAFELPYLATF
Ga0070733_107168841	3300005541	Surface Soil	MKNAKELMIEYTAFSLREPKKAAEMFAEDGAFELPYLA
Ga0066691_108255731	3300005586	Soil	MSRKNAKELMLEFIAFSFRDTKKAAEMFAEDGAFEM
Ga0070761_109190822	3300005591	Soil	MKNARELMLEYTAFSLRDPKKAAEMFAEDGAFELPYLA
Ga0068860_1006079393	3300005843	Switchgrass Rhizosphere	MKNARELLEEFTGTSFRDPRKAAEMFAEDGAFEMP
Ga0070766_112341002	3300005921	Soil	MKNAKELMLEYTAFSFREPKKAAEMFAEDGAFELPYLATFG
Ga0070717_114823412	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MKNAKELMLGYTAFSFREPKKAAEMFAEDGAFELPYLATFG
Ga0068871_1005655361	3300006358	Miscanthus Rhizosphere	MKNAKELMLEYTAFSFREPKKAAEMFADDGAFELPYLATFGL
Ga0066659_112068831	3300006797	Soil	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPYLESVGVP
Ga0075428_1014400831	3300006844	Populus Rhizosphere	MKNAKELLEEFTAASFRDPKQAAEMFTDDGAFEMPYLESFG
Ga0075431_1015899281	3300006847	Populus Rhizosphere	MKNAKELLEEFTAASFRDPKQAAEMFTDDGAFEMPYLESFGLPGRYE
Ga0073928_100723684	3300006893	Iron-Sulfur Acid Spring	MKKAKELLLEFTALAMRDAEKTADMFTEDGAFEMPYLATFG*
Ga0075419_112380531	3300006969	Populus Rhizosphere	MKNAKELLEEFTAASFRDPKQAAEMFTDDGAFEMPYLESFGIPG
Ga0099791_101987522	3300007255	Vadose Zone Soil	MKTAKELLEEFTAASFRDPKQAAEMFTDDGAFEMPYLESFGLPGRYEG
Ga0099829_105866922	3300009038	Vadose Zone Soil	MARNRRIAMKNAKELMLEYTAFSIRDPKKAAEMFAEDGAFEM
Ga0111539_124439662	3300009094	Populus Rhizosphere	MKNAKELLEEFTAASFRDPKQAAEMFTDDGAFEMPYLESFGIPGRY
Ga0114129_110182383	3300009147	Populus Rhizosphere	MKNAKELLEEFTAASFRDPKKAAEMFSEDGAFEMPYLESFGIPGRYE
Ga0111538_101530301	3300009156	Populus Rhizosphere	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPYLESFGLPGRYEGR
Ga0111538_114599961	3300009156	Populus Rhizosphere	MKNAKELLEEFTAASFRDPKEAAEMFTEDGAFEMPYLESLG
Ga0075423_129957212	3300009162	Populus Rhizosphere	MKNARELLEEFTATSFRDPKKAAEMFADDGAFEMPYLESLGVPG
Ga0116106_12672222	3300009645	Peatland	MVRNRRISMKNAKELMLEYTAFSFREPKKAAEMFAEDGAFELP
Ga0126384_107688722	3300010046	Tropical Forest Soil	LKNARQLLEEFTASSFRDTKKSSEMFAEDGAFEMPY
Ga0127484_10690861	3300010134	Grasslands Soil	MKNAKELLEEFTAASFRDPKKAAEMFSEDGAFEMPYLESVGVPGRYEGREA
Ga0134088_104014921	3300010304	Grasslands Soil	MKSAKELLEEFTAASFRDPKKAAQMFTKDGAFEMPYLESLGVP
Ga0134122_111551051	3300010400	Terrestrial Soil	MKNARELLEEFTASSFRDPKKAAEMFAEDGAFEMPY
Ga0137391_104568022	3300011270	Vadose Zone Soil	MKKAKELMLEFTALAIRDPQKTAEMFTKDGAFEMPYLAAFGYPTQYKGHEA
Ga0137393_110755571	3300011271	Vadose Zone Soil	MKNARELLEEFTAASFRDPKKAAEMFTDDGAFEMP
Ga0137364_110717621	3300012198	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMP*
Ga0137363_110540311	3300012202	Vadose Zone Soil	MVRNRRRSMKNAKELMLEYTAFSLRDPKKAAEMFVEDGAFE
Ga0137399_115397102	3300012203	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKKAAEMFSEDGAFEMPYLESFG
Ga0137399_117473241	3300012203	Vadose Zone Soil	MEEGSHMKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPYLE
Ga0137362_107732221	3300012205	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKQAAEMFTDDGAFEMPYLESFGLPGRYEGREAIEG
Ga0137380_102785461	3300012206	Vadose Zone Soil	MSMKNAKELMLEFTASSFKDPKQAAEMFAEDGAFEMPYLATF
Ga0137381_114641171	3300012207	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKKAAEMFTDDGAFEMPYLESFGIPGR
Ga0137377_103869151	3300012211	Vadose Zone Soil	MKNARLLLEEFIATSFRDPKQAASMFTAGGTFEIPYLE
Ga0150985_1218548021	3300012212	Avena Fatua Rhizosphere	MKNARELLEEFTAASFRDPKKAAEMFTEGGAFEMPYLESVGLPGRKK
Ga0137386_109011851	3300012351	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKQAAEMFTDDGAFEMPYLE
Ga0137397_103343683	3300012685	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKKSAEMFTEDGAFEMPYLESFGFPGRYEG
Ga0137395_108856331	3300012917	Vadose Zone Soil	MKTAKELLEEFTAASFRDPKKAAEMFSEDGAFEMPYLESVGVPGRYQGRDAIEG
Ga0137394_104735763	3300012922	Vadose Zone Soil	MKNAKELLEEFAAASFRDPKKAAEMFSEDGAFEMPYLESF
Ga0137407_100990411	3300012930	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKKAAKMFTDDGAFEMPY
Ga0137407_104825923	3300012930	Vadose Zone Soil	MVRNRRVSMKNTKELMLEYTAFSFRDPKTAAEMFAEDGAF
Ga0137407_122689271	3300012930	Vadose Zone Soil	MKNARELLEEFTATSFRDPKKAAEMFTEDGAFEMPYLESLGVP
Ga0137410_101980201	3300012944	Vadose Zone Soil	MKNAKELLEEFAAASFRDPKKAAEMFSEDGAFEMPYLESFGLPGRYE
Ga0137410_102964332	3300012944	Vadose Zone Soil	MKNARELLEEFTASSFRDPKKAAEMFAEDGAFEIPYLESVGVPGRY
Ga0137410_110384653	3300012944	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKKAAEMFSEDGAFEMPYLESFGLPGRYE
Ga0157373_114420601	3300013100	Corn Rhizosphere	MKNAKELMLEFTASSFRNPQKAAEMFAEDGAFEMPYLAS
Ga0181534_100179336	3300014168	Bog	MKNARQLLEEFTAGSFRDPQQAAAMFAEDGVLEMP*
Ga0163161_120069731	3300017792	Switchgrass Rhizosphere	MKGSQMKNAKELLEEFTAASFRDPKQAAEMFTEDGAFEMPYLESFGIPGRY
Ga0187873_11350331	3300018013	Peatland	MKNAKELMLEYTAFSFREPKKAAEMFAEDGAFELPYLST
Ga0187863_102652081	3300018034	Peatland	MKNAKELMLEYTAYSFRDPKKAAEMFAENGAFELPYLAT
Ga0187890_102253052	3300018044	Peatland	MKNAKELMLEYTALSFKDPKRAAEMFTEDGAFEMPYLAALGL
Ga0184638_12458322	3300018052	Groundwater Sediment	MKNAKELLEEFTAASFRDPKKAAEMFADDGAFEMPYLES
Ga0190272_122601682	3300018429	Soil	MKGSHMKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEIPYLESVG
Ga0193753_100018141	3300020034	Soil	MKNAKELMLEYTAFSFRDPKKAAEMFTEDGAFEMPYLATFG
Ga0193716_10664033	3300020061	Soil	MKNAKELMLEYTAFSFRDPKKAAEMFTEDGAFEMSYLATF
Ga0179594_100071501	3300020170	Vadose Zone Soil	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPY
Ga0210399_1000991112	3300020581	Soil	MKNAKELMLEFTASSFRDPQKAAEMFAEDGAFEMPY
Ga0210395_113028332	3300020582	Soil	MKNAKELTLECTAFSFRDPKKAAEMFAEDGAFELPYLATWGDPLR
Ga0210401_116125162	3300020583	Soil	MKNAKELMLEYTAFSFRDPKKAAEMFAEDGAFELPYRATFGLPTEYR
Ga0210378_102146762	3300021073	Groundwater Sediment	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPYLESFG
Ga0210388_114718701	3300021181	Soil	MKNARELMLEYTAFSFREPKKAAEMFAEDGAFELPYLATFGL
Ga0210383_107456371	3300021407	Soil	MKNAKELMLEYTAFSFREPKKAVAMFAEDGAFELPYLATFG
Ga0210394_108780522	3300021420	Soil	MKNAKELMLEYTAFSFRDPKKAAEMFTADGAFEMPYLASFGLPP
Ga0210384_116153971	3300021432	Soil	MKNAKELMLEYTAYSFRDPKKAAEMFAEDGAFELPYL
Ga0210391_105177453	3300021433	Soil	MKNAKELMLEYTAFSFRDPKKAAEMFAEDGAFELPYLA
Ga0210391_114430622	3300021433	Soil	MKNAKELMLEYTVFSFRDPKKAAEMFAEDGAFELPYLATFEIG
Ga0212123_103999852	3300022557	Iron-Sulfur Acid Spring	MKNARQLLEEFIATSFRDPKQAASMFTADGTFEMPYLEDLGFQPIYR
Ga0212123_105672682	3300022557	Iron-Sulfur Acid Spring	MKKAKELLLEFTALAMRDAEKTADMFTEDGAFEMPYLAT
Ga0222623_103495421	3300022694	Groundwater Sediment	MKNAKELLEEFTAASFRDPKQAAEMFTDDGAFEMPYL
Ga0242653_10034023	3300022712	Soil	MKNAKELMLEYTASSIRDPKKAAEMFAEDGAFEMPYLTTFGI
Ga0224561_10043521	3300023030	Soil	MKNAKELMLEYTAFSFREPKKAAEMFAEDGAFELPYLAT
Ga0179589_103775632	3300024288	Vadose Zone Soil	MKNARQLLEEFIATSFRDPKQAASMFTADGTFEMPYLEDLGLQPIYRG
Ga0207684_107127552	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKNARQLLEEFIATSFRDPKQAASMFTADGTFEMADLED
Ga0207684_115718972	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MKNARELLEEFTSASFRDPKKAAEMFTEDGAFEMPYLESLDVPGRY
Ga0207663_102198103	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MKNAKELMLEYTGFSLRDPKKAAEMFAEDGAFELPYLAT
Ga0207709_102523534	3300025935	Miscanthus Rhizosphere	MKNAKELLEEFTAASFRDPKEAAEMFTEDGAFEMPYL
Ga0209473_10939901	3300026330	Soil	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPYLES
Ga0257176_10471821	3300026361	Soil	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPYL
Ga0179587_102798672	3300026557	Vadose Zone Soil	MKNARELLEEFTASSFRDPKKAAEMFAEDGAFEMPYLESV
Ga0179587_107669922	3300026557	Vadose Zone Soil	MKSAKELLEEFTASSFRDPRKAAEMVIEDGAFEMPYLESFGIPGRYERS
Ga0209530_11753651	3300027692	Forest Soil	MKTAKELMLEYTAYSFRDPKKAAEMFAEDGAFEMP
Ga0209248_100335413	3300027729	Bog Forest Soil	MKNAKELMLEYTAFSFKDPKTAAEMFAEDGAFELPYLAT
Ga0209380_101044091	3300027889	Soil	MKNAKELMLEYTAFSFRDPKKAAEMFGEDGAFELPYLATF
Ga0209380_104542432	3300027889	Soil	MKNAKELMLEYTAFSFRDPKKAAEMFTEDGAFEMPYLASFGLPPR
Ga0209624_107385801	3300027895	Forest Soil	MKNAKELMLEYTAFSFGNPKKAAEMFAEDGAFELPY
Ga0209624_107643793	3300027895	Forest Soil	MKKAKELLLEFTALAMRDAEKTADMFTEDGAFEMPI
Ga0209526_100451963	3300028047	Forest Soil	MKNARQLLEEFIATSFRDAKQAASMFTADGTFEMPYL
Ga0268264_110158111	3300028381	Switchgrass Rhizosphere	MKNARELLEEFTGTSFRDPRKAAEMFAEDGAFEMPYLE
Ga0308309_102374363	3300028906	Soil	MKNAKELMLEYTAYSFRDPKKAAEMFAEDGAFELPYLAT
Ga0265762_10048136	3300030760	Soil	LEYTAFSFRDLKKAAEMFAEDGAFELPYLATFGLPTQYRG
Ga0265762_10183483	3300030760	Soil	MKNAKELMLEYSAFSFRDPKKAAEMFAEDGAFELPYLATF
Ga0265750_10795192	3300030813	Soil	MKNAKELMLEYSAFSFRDPKKAAEMFAEDGAFELPYLATFG
Ga0302325_124710912	3300031234	Palsa	MKNAKELMLEYTAFSFREPKKAAEMFAEDGAFELPYL
Ga0302326_120007211	3300031525	Palsa	MKNAKELMLEYTAFSFREPKKAAEMFAEDGAFELPY
Ga0307476_101477493	3300031715	Hardwood Forest Soil	MKNAKELMLEYTAFSFRDPKKAAEMFAEDGAFELPYLATFG
Ga0307476_106476382	3300031715	Hardwood Forest Soil	VKKAKELMLEFTALAIKDPQKTAEMFTEDGAFEMPYLAAFGYPTQYK
Ga0307474_108010341	3300031718	Hardwood Forest Soil	MKNARELMIEYTAFSLRDPKKAAEMFAEDGAFELPYLATFG
Ga0307468_1005920861	3300031740	Hardwood Forest Soil	MKTARELREEFTAASFRDPRKAAEMFTEHGAFEMPYL
Ga0307468_1010749372	3300031740	Hardwood Forest Soil	MKNARALLEEFTAASFRDPKKAAEMFTEDGAFEMPYL
Ga0307468_1014626231	3300031740	Hardwood Forest Soil	MKNAKELLEEFTAASFRDPKKAAEMFTEDGAFEMPYLESFGSPGRYEG
Ga0307475_109221864	3300031754	Hardwood Forest Soil	MTNARHILEEFTASLFVDPKKAAKCLLQDGAFEMPYLD
Ga0307473_106128472	3300031820	Hardwood Forest Soil	MKDARVLLEEFTAASFRDPKKAAEMFSEDGAFEMPY
Ga0307478_107318173	3300031823	Hardwood Forest Soil	MKNAKELMLEYTAYSFRDPKKAAEMFAEDGAFELPYLATF
Ga0307410_109403181	3300031852	Rhizosphere	MKNAKELLEEFTAASFRDPKQAAEMFTEDGAFEMPYLESFG
Ga0307479_113647321	3300031962	Hardwood Forest Soil	MTNARQILEEFTASSFLDPKKAAKCLLQDGAFEMPYLDSLRFPWRYGNN
Ga0307479_117814061	3300031962	Hardwood Forest Soil	VKKAKELMLEFTALAIKDPQKTAEMFTEDGAFEMPYLAAFGYPTQYKGQEA
Ga0307471_1004922442	3300032180	Hardwood Forest Soil	MKNAKDLLEEFTASSFRDPKKAAEMFTEDGAFEMPYLESFGFPGRYAGREA

Hidden Markov Model


Click on a Sequence Logo column to get its information.
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