Metagenome / Metatranscriptome Family F073745

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073745
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	127 residues
Representative Sequence	MSEPMRDPMRRQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Number of Associated Samples	88
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	86.67 %
% of genes near scaffold ends (potentially truncated)	27.50 %
% of genes from short scaffolds (< 2000 bps)	83.33 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.34

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.667 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (27.500 % of family members)
Environment Ontology (ENVO)	Unclassified (24.167 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (55.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 8.18% β-sheet: 10.69% Coil/Unstructured: 81.13%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.34
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.34
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00847	AP2	8.33
PF01724	DUF29	5.00
PF10258	PHAX_RNA-bd	4.17
PF00805	Pentapeptide	3.33
PF01381	HTH_3	3.33
PF12844	HTH_19	2.50
PF13560	HTH_31	1.67
PF01656	CbiA	0.83
PF00239	Resolvase	0.83
PF07508	Recombinase	0.83
PF02776	TPP_enzyme_N	0.83
PF14216	DUF4326	0.83
PF13359	DDE_Tnp_4	0.83
PF01979	Amidohydro_1	0.83
PF12759	HTH_Tnp_IS1	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	3.33
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.67
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
All Organisms	root	All Organisms	23.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
cellular organisms	root	All Organisms → cellular organisms	23.33 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	22.50 %
Archaea	superkingdom	All Organisms → cellular organisms → Archaea	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	4.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.33 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.67 %
Euryarchaeota	phylum	All Organisms → cellular organisms → Archaea → Euryarchaeota	0.83 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
Cyanobacteria/Melainabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group	3.33 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.67 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1.67 %
Methanomada group	clade	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group	0.83 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
Cyanobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	3.33 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	1.67 %
Nitrosomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales	1.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
Methanobacteria	class	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria	0.83 %
Planctomycetia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
Nitrosomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae	1.67 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	1.67 %
Methanobacteriales	order	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales	0.83 %
unclassified Cyanobacteria	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria	0.83 %
Gemmatales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales	0.83 %
Frankiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales	0.83 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.67 %
Nitrosomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas	1.67 %
Methanobacteriaceae	family	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae	0.83 %
Gemmataceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae	0.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.83 %
Frankiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae	0.83 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
unclassified Nitrosomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas	1.67 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.67 %
Frankia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia	0.83 %
Telmatocola	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Telmatocola	0.83 %
Methanobacterium	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium	0.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.83 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
Nitrosomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp.	1.67 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.67 %
unclassified Frankia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia	0.83 %
Telmatocola sphagniphila	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Telmatocola → Telmatocola sphagniphila	0.83 %
Methanobacterium	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium	0.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.83 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.67 %
Nitrosomonas sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp.	1.67 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.67 %
Frankia sp. DC12	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. DC12	0.83 %
Telmatocola sphagniphila	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Telmatocola → Telmatocola sphagniphila	0.83 %
Methanobacterium	genus	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium	0.83 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	0.83 %
Cyanobacteria bacterium 13_1_40CM_2_61_4	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_100798001	Not Available	645	Open in IMG/M
3300005332\|Ga0066388_101873271	Not Available	1070	Open in IMG/M
3300005844\|Ga0068862_100978790	Not Available	836	Open in IMG/M
3300005937\|Ga0081455_10062882	All Organisms → cellular organisms → Bacteria	3118	Open in IMG/M
3300006194\|Ga0075427_10090192	Not Available	562	Open in IMG/M
3300006844\|Ga0075428_100017229	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7983	Open in IMG/M
3300006844\|Ga0075428_100112077	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2971	Open in IMG/M
3300006844\|Ga0075428_100158350	Not Available	2458	Open in IMG/M
3300006844\|Ga0075428_101131305	Not Available	826	Open in IMG/M
3300006845\|Ga0075421_100585996	Not Available	1313	Open in IMG/M
3300006845\|Ga0075421_101687345	Not Available	686	Open in IMG/M
3300006846\|Ga0075430_101189323	Not Available	628	Open in IMG/M
3300006847\|Ga0075431_101202235	Not Available	721	Open in IMG/M
3300006853\|Ga0075420_100762199	Not Available	834	Open in IMG/M
3300006853\|Ga0075420_100773942	Not Available	827	Open in IMG/M
3300006854\|Ga0075425_100373957	Not Available	1641	Open in IMG/M
3300006854\|Ga0075425_102536634	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Frankiales → Frankiaceae → Frankia → unclassified Frankia → Frankia sp. DC12	567	Open in IMG/M
3300006871\|Ga0075434_102429705	Not Available	526	Open in IMG/M
3300006880\|Ga0075429_101392968	Not Available	611	Open in IMG/M
3300006969\|Ga0075419_10117389	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria → unclassified Cyanobacteria → Cyanobacteria bacterium 13_1_40CM_2_61_4	1720	Open in IMG/M
3300007255\|Ga0099791_10025382	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	2572	Open in IMG/M
3300009012\|Ga0066710_100125987	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Gemmatales → Gemmataceae → Telmatocola → Telmatocola sphagniphila	3503	Open in IMG/M
3300009012\|Ga0066710_104275803	Not Available	534	Open in IMG/M
3300009038\|Ga0099829_10212271	Not Available	1570	Open in IMG/M
3300009089\|Ga0099828_10193807	All Organisms → cellular organisms → Bacteria	1812	Open in IMG/M
3300009090\|Ga0099827_10403433	Not Available	1168	Open in IMG/M
3300009094\|Ga0111539_10379138	Not Available	1646	Open in IMG/M
3300009094\|Ga0111539_11784174	Not Available	713	Open in IMG/M
3300009100\|Ga0075418_10061984	All Organisms → cellular organisms → Bacteria	3993	Open in IMG/M
3300009100\|Ga0075418_11228439	Not Available	812	Open in IMG/M
3300009100\|Ga0075418_11259744	Not Available	801	Open in IMG/M
3300009137\|Ga0066709_100443606	All Organisms → cellular organisms → Bacteria	1813	Open in IMG/M
3300009147\|Ga0114129_10215071	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	2596	Open in IMG/M
3300009147\|Ga0114129_10264401	Not Available	2304	Open in IMG/M
3300009147\|Ga0114129_10822397	Not Available	1183	Open in IMG/M
3300009147\|Ga0114129_13389514	Not Available	513	Open in IMG/M
3300009156\|Ga0111538_10495092	Not Available	1549	Open in IMG/M
3300009156\|Ga0111538_13838205	Not Available	520	Open in IMG/M
3300009162\|Ga0075423_10473119	All Organisms → cellular organisms → Bacteria	1317	Open in IMG/M
3300009162\|Ga0075423_10865909	Not Available	957	Open in IMG/M
3300009792\|Ga0126374_11138985	Not Available	621	Open in IMG/M
3300010046\|Ga0126384_10348170	Not Available	1234	Open in IMG/M
3300010047\|Ga0126382_10643662	Not Available	880	Open in IMG/M
3300010047\|Ga0126382_11724427	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300010145\|Ga0126321_1319252	Not Available	1145	Open in IMG/M
3300010359\|Ga0126376_11475037	Not Available	708	Open in IMG/M
3300010366\|Ga0126379_10521930	Not Available	1263	Open in IMG/M
3300010398\|Ga0126383_10438814	Not Available	1352	Open in IMG/M
3300010398\|Ga0126383_10620106	All Organisms → cellular organisms → Archaea → Euryarchaeota → Methanomada group → Methanobacteria → Methanobacteriales → Methanobacteriaceae → Methanobacterium	1155	Open in IMG/M
3300010398\|Ga0126383_10853938	Not Available	995	Open in IMG/M
3300010403\|Ga0134123_11441336	Not Available	730	Open in IMG/M
3300011270\|Ga0137391_10540458	Not Available	983	Open in IMG/M
3300011271\|Ga0137393_11693608	Not Available	521	Open in IMG/M
3300012189\|Ga0137388_10207227	All Organisms → cellular organisms → Bacteria	1769	Open in IMG/M
3300012202\|Ga0137363_11267361	Not Available	625	Open in IMG/M
3300012202\|Ga0137363_11772724	Not Available	510	Open in IMG/M
3300012203\|Ga0137399_10814487	Not Available	786	Open in IMG/M
3300012204\|Ga0137374_10016888	All Organisms → cellular organisms → Bacteria	8360	Open in IMG/M
3300012204\|Ga0137374_10101873	All Organisms → cellular organisms → Bacteria	2704	Open in IMG/M
3300012362\|Ga0137361_10235743	Not Available	1664	Open in IMG/M
3300012362\|Ga0137361_11481014	Not Available	601	Open in IMG/M
3300012363\|Ga0137390_10710866	Not Available	967	Open in IMG/M
3300012917\|Ga0137395_10298085	Not Available	1142	Open in IMG/M
3300012922\|Ga0137394_10543182	Not Available	985	Open in IMG/M
3300012925\|Ga0137419_11233583	Not Available	627	Open in IMG/M
3300012930\|Ga0137407_10734261	Not Available	931	Open in IMG/M
3300012944\|Ga0137410_10201069	Not Available	1543	Open in IMG/M
3300012948\|Ga0126375_10260643	Not Available	1180	Open in IMG/M
3300012971\|Ga0126369_10090402	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2743	Open in IMG/M
3300013306\|Ga0163162_11739618	Not Available	712	Open in IMG/M
3300013308\|Ga0157375_10566367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp.	1297	Open in IMG/M
3300014968\|Ga0157379_10882505	Not Available	848	Open in IMG/M
3300015371\|Ga0132258_10869203	All Organisms → cellular organisms → Bacteria	2276	Open in IMG/M
3300015372\|Ga0132256_100050289	All Organisms → cellular organisms → Bacteria	3871	Open in IMG/M
3300015372\|Ga0132256_100221636	Not Available	1948	Open in IMG/M
3300016319\|Ga0182033_10098838	Not Available	2141	Open in IMG/M
3300016319\|Ga0182033_10250535	Not Available	1439	Open in IMG/M
3300016357\|Ga0182032_10110931	Not Available	1958	Open in IMG/M
3300016357\|Ga0182032_10230373	All Organisms → cellular organisms → Bacteria	1429	Open in IMG/M
3300016371\|Ga0182034_10115935	Not Available	1952	Open in IMG/M
3300016445\|Ga0182038_10391179	Not Available	1163	Open in IMG/M
3300021560\|Ga0126371_11998071	Not Available	697	Open in IMG/M
3300022195\|Ga0222625_1160988	Not Available	983	Open in IMG/M
3300022195\|Ga0222625_1500926	Not Available	946	Open in IMG/M
3300025936\|Ga0207670_10548237	Not Available	944	Open in IMG/M
3300026035\|Ga0207703_10146271	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Nitrosomonadales → Nitrosomonadaceae → Nitrosomonas → unclassified Nitrosomonas → Nitrosomonas sp.	2056	Open in IMG/M
3300026118\|Ga0207675_100138668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Cyanobacteria/Melainabacteria group → Cyanobacteria	2309	Open in IMG/M
3300027882\|Ga0209590_10187188	Not Available	1303	Open in IMG/M
3300027907\|Ga0207428_10141170	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1838	Open in IMG/M
3300027907\|Ga0207428_10356227	Not Available	1076	Open in IMG/M
3300027909\|Ga0209382_10142218	All Organisms → cellular organisms → Bacteria	2786	Open in IMG/M
3300027909\|Ga0209382_11403181	Not Available	702	Open in IMG/M
3300028381\|Ga0268264_10599465	Not Available	1085	Open in IMG/M
3300028792\|Ga0307504_10014275	All Organisms → cellular organisms → Bacteria	1863	Open in IMG/M
3300031546\|Ga0318538_10763559	Not Available	525	Open in IMG/M
3300031547\|Ga0310887_10376675	Not Available	830	Open in IMG/M
3300031573\|Ga0310915_11274401	Not Available	507	Open in IMG/M
3300031719\|Ga0306917_10124437	Not Available	1883	Open in IMG/M
3300031744\|Ga0306918_10124216	Not Available	1875	Open in IMG/M
3300031747\|Ga0318502_10948365	Not Available	524	Open in IMG/M
3300031890\|Ga0306925_11159307	Not Available	777	Open in IMG/M
3300031908\|Ga0310900_10731832	Not Available	795	Open in IMG/M
3300031910\|Ga0306923_10171556	All Organisms → cellular organisms → Bacteria	2477	Open in IMG/M
3300031910\|Ga0306923_11413047	Not Available	732	Open in IMG/M
3300031912\|Ga0306921_10638211	Not Available	1229	Open in IMG/M
3300031912\|Ga0306921_11236399	Not Available	830	Open in IMG/M
3300031954\|Ga0306926_10289861	Not Available	2027	Open in IMG/M
3300031954\|Ga0306926_11409183	Not Available	808	Open in IMG/M
3300032059\|Ga0318533_10985538	Not Available	618	Open in IMG/M
3300032066\|Ga0318514_10646381	Not Available	563	Open in IMG/M
3300032075\|Ga0310890_11014213	Not Available	668	Open in IMG/M
3300032075\|Ga0310890_11146795	Not Available	631	Open in IMG/M
3300032076\|Ga0306924_10554609	Not Available	1304	Open in IMG/M
3300032076\|Ga0306924_12122578	Not Available	575	Open in IMG/M
3300032205\|Ga0307472_101268560	Not Available	708	Open in IMG/M
3300032261\|Ga0306920_101559000	Not Available	941	Open in IMG/M
3300033289\|Ga0310914_10411123	Not Available	1225	Open in IMG/M
3300033290\|Ga0318519_10649629	Not Available	643	Open in IMG/M
3300034659\|Ga0314780_025328	Not Available	1046	Open in IMG/M
3300034660\|Ga0314781_076000	Not Available	642	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	63.33%
Host-Associated	Host-Associated	36.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	60.83%
Plants	Host-Associated → Plants	36.67%
Aquatic	Environmental → Aquatic	2.50%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	30.83%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Freshwater	Environmental → Aquatic → Freshwater	2.50%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	29.17%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.00%
Loam	Environmental → Terrestrial → Soil → Loam	2.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.67%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.67%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.17%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	29.17%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.67%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.00%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.67%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	27.50%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	17.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.00%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.00%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.00%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	3.33%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	2.50%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.67%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	0.83%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.83%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006880	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009156	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012204	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_100_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022195	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300025936	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes)	Environmental	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028381	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028792	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 19_S	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031908	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032075	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M
3300034659	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300034660	Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60R2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1007980011	3300000559	Soil	MSEPMRDPMRLQLPSGQRHPATALLPAAQQASHATPLPGHLCEQCLDAPAVAVVPAPWGGEMGICEACAGLPPAVPAASQAVVPACLICAEPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0066388_1018732713	3300005332	Tropical Forest Soil	MSEPMRNPMQRQLTSGRCIAPAALLPGAPSASTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAVCAGLPPTVPAAPRAVVPACLICAQPPGLDDDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL*
Ga0068862_1009787902	3300005844	Switchgrass Rhizosphere	MREPMRDPMRRPLTRGRRLPPAALLPGAPSASMEPSIPGHLCEACLDAPAVAFVPAPWGGEMGICTACAGLPPPAPDEDATAYMQHCFDTGHPLRPGALRVRPGVRI
Ga0081455_100628825	3300005937	Tabebuia Heterophylla Rhizosphere	MSEPRRDPRRRQLTSGRRSTAALLPGEPHPSTETSIPGHLCEVCLDAPAVALVPAPWGGEMGICAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRLGALRIRPGVRINLRGA*
Ga0075427_100901921	3300006194	Populus Rhizosphere	MSESMSDPMQRQLTSGRRSTPAALLPGAPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLLPAVLAATRAVVPGCLICVQPPGPDEDATAYVQHCFD
Ga0075428_1000172293	3300006844	Populus Rhizosphere	MSEPMRNPMRRQLTSGRHITPAALLPGAPSASPETSIPGHLCEVCLDAPAVAFVAAPWGGEMGVCAACAGRPPDVPAAHRDVVPACLICAAPPGPDEDATAYVQHCFDTGHPLRPGPWQIPRGTRIYL*
Ga0075428_1001120774	3300006844	Populus Rhizosphere	MSEPMRDPMQRQLTSGRRSIAALLPEAPSASTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACAGRPPDVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0075428_1001583502	3300006844	Populus Rhizosphere	MSEPMRDPMQRQRTSGRRSIAALLPEAPRPSNESPMPGHLCEICRDAPAVACVPAPWGGEMGSCAACAGRPPDVPAAHRDVVPACLICADPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYLCGPQGAAERPEPARSDPL*
Ga0075428_1011313053	3300006844	Populus Rhizosphere	PRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLLPAVLAATRAVVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDRL*
Ga0075421_1005859962	3300006845	Populus Rhizosphere	MSESMSDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGICAACAGLLPAVPAATRAVVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDLL*
Ga0075421_1016873452	3300006845	Populus Rhizosphere	MRRQLTSGRRSIAALLPEAPRPSNESPMPGHLCEICLDAPAMVFVSAPWGGEMGSCAACAGLPPTMPAAHRDVVPACLICADPPGPNEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL*
Ga0075430_1011893231	3300006846	Populus Rhizosphere	PRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLLPAVLAATRAVVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDLL*
Ga0075431_1012022351	3300006847	Populus Rhizosphere	MSESMSDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLLPTVLAATRAVVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGGGSTCEGRLAGLSSKVAMLNELSRESRE*
Ga0075420_1007621992	3300006853	Populus Rhizosphere	MSESMSDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAVCAGLPPPVPAAPRAAVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDRL*
Ga0075420_1007739422	3300006853	Populus Rhizosphere	MSEPMRDPMQRQLTSGRRSIAALLPEAPSASTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACAGRPPDVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRG
Ga0075425_1003739572	3300006854	Populus Rhizosphere	MSEPSRDPRRRQRPSGQRRIAALLPEAQRASHESPMPGHLCEVCLDAPAVAVVPAPWGGEMGSCTACAGLPPIVPAAPPAVVPGCLICAQPPGWDEDATAYVQHCFDTGHPLRPGALRIRPGVRITL*
Ga0075425_1025366341	3300006854	Populus Rhizosphere	MSEPMRDPMRRQLTSGRRITPAALLPGAQSASTERAIPGYLCEVCLDAPAARLQPAPWGGEMGVCAACAGLPPAGPTATRDTVPACLICAQPPGPDEDATAYVQHCFDTGHPLRPGPWQIQRGTRIYL*
Ga0075434_1024297051	3300006871	Populus Rhizosphere	GRDGMSEPMRNPMRRQLTSGRHITPAALLPGAPSASPETSIPGHLCEVCLDAPAVAFVAAPWGGEMGVCAACAGRPPDVPAAHRDVVPACLICAAPPGPDEDATAYVQHCFDTGHPLRPGPWQIPRGTRIYL*
Ga0075429_1013929681	3300006880	Populus Rhizosphere	MSESMRDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAVCAGLPPAVPPAAHQDAVPACLICAQPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL*
Ga0075419_101173894	3300006969	Populus Rhizosphere	MSESMSDPMQRQRTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAVCAGLPPPVPAAPRAAVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDLL*
Ga0099791_100253822	3300007255	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLEPAAPARPWAVVPACPVCVHLPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0066710_1001259872	3300009012	Grasslands Soil	MSEPMGGPMRRQRTSGRRNPAPALLPAAQQASYETPLPGHLCEQCLDAPAVTVVAAPWGGKMGVCAACAGLPSDVPAAHQDVVPACLICTAPPGPDEDATAYVQHCFDTGHPLRRGEWRIQRGTRIYL
Ga0066710_1042758031	3300009012	Grasslands Soil	MNEPMRAPMRRQLTSGRRITPAALLPGEPRPREETPLPGHLCEVCLDAPAVALQPAPWGGDMGVCEACVGLPPAGPTADWDAVPACLICAQPPGPDEDATAYVQHCFDTGHPL
Ga0099829_102122713	3300009038	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCPACGGLEPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0099828_101938071	3300009089	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLEPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0099827_104034332	3300009090	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLAPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0111539_103791381	3300009094	Populus Rhizosphere	MSESMSDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAVCAGLPPPVPAAPRAAVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0111539_117841742	3300009094	Populus Rhizosphere	MSEPMRDPMQRQLTSGRRITPAALLPGAPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACGGLPPAEPARAWAVVPACPVCADLPGPEEDATAYVQHCMDSGHPLRPGRWRLRPGTRINLRST*
Ga0075418_100619843	3300009100	Populus Rhizosphere	MSEPMRDPMQRQLTSGRRSIAALLPEAPSASTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACAGRPPDVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPRALRIRPGARINLRGA*
Ga0075418_112284392	3300009100	Populus Rhizosphere	MSEPMRDPMQRQRTSGRRSIAALLPEAPRPSNESPMPGHLCEICRDAPAVACVPAPWGGEMGSCAACAGRPPDVPAAHRDVVPACLICADPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYLYGPQGAAERAEPARRDPL*
Ga0075418_112597441	3300009100	Populus Rhizosphere	MSESMSDPMQRQRTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDASAVAFVPAPWGGEMGVCAACGGLPPAEPARAWAVVPACPVCADLPGPEEDATAYVQHCMDSGHPLRPGRWRLRPGTRINLRST*
Ga0066709_1004436064	3300009137	Grasslands Soil	MSEPMGGPMRRQRTSGRRNPAPALLPAAQQASYETPLPGHLCEQCLDAPAVTVVAAPWGGKMGVCAACAGLPSDVPAAHQDVVPACLICTAPPGPDEDATAYVQHCFDTGHPLRRGEWQIQRGTRIYL*
Ga0114129_102150713	3300009147	Populus Rhizosphere	RRQLTSGRHITPAALLPGAPSASPETSIPGHLCEVCLDAPAVAFVAAPWGGEMGVCAACAGRPPDVPAAHRDVVPACLICAAPPGPDEDATAYVQHCFDTGHPLRPGPWQIPRGTRIYL*
Ga0114129_102644013	3300009147	Populus Rhizosphere	MSEPMRDPMQRQLTSGRRSIAALLPEAPSASTETSIPGHLCEVCLDAPAVAFAPAPWGGEMGVCAACAGRPPDVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPRALRIRPGARINLRGA*
Ga0114129_108223972	3300009147	Populus Rhizosphere	MSEPMRDPMQRQLTSGRRSIAALLPEAPRPSNESPMPGHLCEICLDAPAVAFVPAPWGGEMGSCAACAGLPPTVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0114129_133895141	3300009147	Populus Rhizosphere	MRRQLTSGRRITTAALLPGAPSASTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACAGRPPDVPAAHRDVVPACLICADPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYLCGPQGAAERPEPARSDPL*
Ga0111538_104950923	3300009156	Populus Rhizosphere	MSESMSDPMQRQLTSGRRSTPAALLPGAPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAVCAGLPPPGPAAPRAAVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDLL*
Ga0111538_138382051	3300009156	Populus Rhizosphere	MSESMSDPMPRQLTSGRRSTPAALRPGEPRPSTETSIPGHLCEVCLDASAVAFVPAPWGGEMGVCAACGGLPPAEPARAWAVVPACPVCADLPGPEEDATAYVQHCMDSGHPLRPGRWRLRPGTRINLQST*
Ga0075423_104731191	3300009162	Populus Rhizosphere	MSEPMRDPMQRQLTSGRHITPAALLPGAPSASPETSIPGHLCEVCLDAPAVAFVAAPWGGEMGVCAACAGRPPDVPAAHRDVVPACLICAAPPGPDEDATAYVQHCFDTGHPLRPGPWQIPRGTRIYL*
Ga0075423_108659091	3300009162	Populus Rhizosphere	MSEPMRDPMQRQLTSGRRSIAALLPEAPSASTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACAGRPPDVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRQGVRINLRGA*
Ga0126374_111389851	3300009792	Tropical Forest Soil	MRRQLTSGRRSIAALLPEAPRPSNKSPMPGHLCEVCLDAPAVAFMPAPWGGEMGVCASCTGRSPDVPAANRDVVPACLICAAPPGPDEDATAYVQHCFDSGHPLRPGPWQIRRGTRIYL*
Ga0126384_103481702	3300010046	Tropical Forest Soil	MSEPMRDPMRRQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLLCAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0126382_106436623	3300010047	Tropical Forest Soil	MSERMRDPMRRQLTSGRRITPAALLPGAQSSSTETSIPGHLCEVCLDAPAARLQPAPWGGEMGVCAACVGLPPAGPAATRDAVPGCLICAQPPGPNEDATAYVQHWKMSHRC*
Ga0126382_117244271	3300010047	Tropical Forest Soil	MSEPMQDPMRRITPAALLPEAPRPSTEPSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGFPPAVPAAPRAVVPGCLICAQPPGADEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0126321_13192522	3300010145	Soil	MRRQLTSGRRRIAALLPEAPRLSQESLMPGHLCEICLDAPAVAFVPAPWGGEMGSCAACAELPPDVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL*
Ga0126376_114750371	3300010359	Tropical Forest Soil	MSESMRDPRRQRTSGQRSMAALLPEAQHSSHASPMPGHLCEVCLDAPAVAFVPAPWGCEMGICAACAGLPPAMPAANRDTVPACFICANPPGPDEDATAYVQHCFDTGHPLRPGQWQIRRGTRIYL*
Ga0126379_105219302	3300010366	Tropical Forest Soil	MSESMRDPRRQRTSGQRSIAALLPEAQHSSHASPMPGHLCEVCLDAPAVAFVPAPWGGEMGICAACAGLPPAMPAANRDTVPACLICADPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL*
Ga0126383_104388143	3300010398	Tropical Forest Soil	EPMRNSMRRQLTSKRRITSALLPWEQRSSDETPIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0126383_106201062	3300010398	Tropical Forest Soil	MRRQLTSGRRSIAALLPEAPRPSNESPMPGHLCEVCLDAPAVAFMPAPWGGEMGVCAACAGRPPDVPAAHRDVVPACLICAAPPGPDEDATAYVQHCFDTGHPLRPGPWQLPRGTRIYL*
Ga0126383_108539382	3300010398	Tropical Forest Soil	MSEPMRDQMRRQLTSGRRSISALLPGAQSASTETSIPGHLCEVCLDASAVALVPAPWGGEMGVCTACAGLPPAVPAATPAVVPGCLICAQPPGPDEDATAYVQHCYDTGHPLRPGTLRIRPGVRINLRGA*
Ga0134123_114413362	3300010403	Terrestrial Soil	MSEPMRDPMRRPLTRGRRLPPAALLPGAPSARPEPSIPGHLCEACLDAPAVAFVPAPWGGEMGICTACAGLPPPAPDEDATAYMQHCFDTGHPLRPGALRVRPGVRITLRGT*
Ga0137391_105404581	3300011270	Vadose Zone Soil	MSEPMSDPMRRQLTSGRRIPTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGSLAPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTR
Ga0137393_116936081	3300011271	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLEPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPR
Ga0137388_102072271	3300012189	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPSASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLAPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0137363_112673612	3300012202	Vadose Zone Soil	MSEPMSDPMRRQLTSGRRIPTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLAPAAPARPWAVVPACPVCVHLPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0137363_117727241	3300012202	Vadose Zone Soil	MSEPMRAPMRRQLTSGRRITPAALLPGEPRPREETPLPGHLCEVCLDAPAVALQPAPWGGDMGVCEACAGLPPAGPTADWDAVPACLICAQPPGPDEDATAYVQHCFDT
Ga0137399_108144872	3300012203	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTPAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLEPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0137374_100168884	3300012204	Vadose Zone Soil	MSEPMRAPMRRQLTSGRRITPAALLPGEPRPREETPLPGHLCEVCLDAPAVALQPAPWGGDMGVCEACAGLPPAGPTADWDAVPACLICAPPPGPDEDATAYVQHCFDTGHPLRPGGWQLRRGTRIYL*
Ga0137374_101018731	3300012204	Vadose Zone Soil	PAPALLPAAQQASYETPLPGHLCEQCMDAPAVTVVAAPWGGKMGVCAACAGLPSDVPAAHQDVVPACLICTAPPGPDEDATAYVQHCFDTGHPLRRGEWQIQRGTRIYL*
Ga0137361_102357432	3300012362	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPSASPETSLPGHLCVVCLDAPAVGLQPAPWGGEMGVCAACGGLAPAAPARPWAVVPACPVCVHLPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0137361_114810141	3300012362	Vadose Zone Soil	QRTSGERNIAALLPEAQRSSNESPMPGHLCEVCLDAPAVAFVPAPWGGEMGICAACVGLPPAVPAVNQDVVPACFICAQPPGPDEDAAAYVQHCFDTGHPLRPGEWQIRRGTRIYL*
Ga0137390_107108662	3300012363	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPSASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCTACGGLAPAAPARPWAVVPACPVCVHLPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0137395_102980852	3300012917	Vadose Zone Soil	MSEPMSDPMRRQLTSGRRIPTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLEPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0137394_105431822	3300012922	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLLGAPSASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLEPAAPARPWAVVPACPVCVHLPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0137419_112335831	3300012925	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPSASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLAPAAPARPWAVVPACPVCVHPPGPEEDATAYVQH
Ga0137407_107342612	3300012930	Vadose Zone Soil	MSEPMRAPMRRQLTSGRRITPAALLPGEPRPREETPLPGHLCEVCLDAPAVALQPAPWGGDMGVCEACAGLPPAGPTADWDAVPACLICAQPPGPDEDATAYVQHCFDTGHPLRPGGWQLRRGTRIYL*
Ga0137410_102010692	3300012944	Vadose Zone Soil	MSEPMSDPMRRPRTSGRRLTTAALLPGAPSASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLEPAAPARPWAVVPACPVCVQPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA*
Ga0126375_102606432	3300012948	Tropical Forest Soil	MSEPMRDPMRRQLTSGRRITPAALLAGEPRPSTETFIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGLDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0126369_100904025	3300012971	Tropical Forest Soil	MSESMRDPRRQRTSGQRSIVALLPEAQRSRHASPMPGHLCEVCLDAPAVAFVPAPWGGEMGICAACAGLPPAEPAAPQNAVPACLICIQPPGPDEDATAYVQHCFDTGHLLRPGPWRIPRGTRIYL*
Ga0163162_117396182	3300013306	Switchgrass Rhizosphere	MSEPMRDPMRRQLTSGRRIPPAALLPGAPSASMEPSIPGHLCEACLDAPAVAFVPAPWGGEMGICTACAGLPPPAPDEDATAYMQHCFDTGHPLRPGALRVRPGVRINLRGT*
Ga0157375_105663672	3300013308	Miscanthus Rhizosphere	MREPMRDPMRRQLTSGRRIPPAALLPGAPSASMEPSIPGHLCEACLDAPAVAFVPAPWGGEMGICTACAGLPPPAPDEDATAYMQHCFDTGHPLRPGALRVRPGVRITLRGT*
Ga0157379_108825052	3300014968	Switchgrass Rhizosphere	MQRPLTSARRITVALLPEAPRPSTEPSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATTYVQHCFDTGHPLRPGALRIRPGVRINL*
Ga0132258_108692033	3300015371	Arabidopsis Rhizosphere	MQRPLTSERRITVALLPEAPRPSTEPSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAVPAAPRAVVPGCLICAQPPGPDEDATTYVQHCFDTGHPLRPGALRIRPGVRINL*
Ga0132256_1000502894	3300015372	Arabidopsis Rhizosphere	MEGRPEREVALYNMLKQVMQRQLTSGWRNPAPALLPAAPQARHDTPLPGHLCEQCLDAPAVAVVAAPGGGEMGVCAACAGLPPAVPPVHRSVVPGCLICAQPPGPDEDATTYVQHCFDTGHPLRPGALRIRPGVRINLRGA*
Ga0132256_1002216361	3300015372	Arabidopsis Rhizosphere	MSEPMSNPMRRQRTSGRRITPGALLPGTQSASTETSIPGHLCEVCLDAPAMAFMPAPWGGEMGICAACAGLPSAVPAAPRAVVPGCLICAQPPGPDEDATAYVQHCFDTGH
Ga0182033_100988384	3300016319	Soil	MSEPMRDPMWRHLTSGRRLTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA
Ga0182033_102505352	3300016319	Soil	MSESIRDPRRQRTSGQRSIVALLPEAQRSRHASPMPGHLCEVCLDARAVACVPAPWGGEMGSCAACAGLPPAGPAAHRDTVPACLICAEPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL
Ga0182032_101109313	3300016357	Soil	MSEPMRDPMRRQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGLDEDATAYVQHCFDTGHPLRPGALRSRPGVRINLRGA
Ga0182032_102303732	3300016357	Soil	MSEPMRDPMRRQLTSGRRSIAALLPEAQRPSNESPMPGHLCEVCLDAPAVAVVPAPWGGEMGVCAACAGLPPPVPAAPRAVVPACLICAQPPGPDEDATVYVQHCFDTGHPLRPGALRVRPGVRINLRGT
Ga0182034_101159352	3300016371	Soil	MSEPMRDPMRRHLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA
Ga0182038_103911792	3300016445	Soil	MSESIRDPRRQRTSGQRSIVALLPEAQRSRHASPMPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAEPAAPQNAEPACLICTQPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL
Ga0126371_119980711	3300021560	Tropical Forest Soil	MSEPLSDPMRRQLTSKRRITSALLPWEQRSSAEAPIPGHLCEVCLDAPAVAFVLAPWGGEMGVCAACTGRPPDVPAAHRDVVPACLICADPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYLRRT
Ga0222625_11609881	3300022195	Groundwater Sediment	MSEPMSDPMRRQLTSGRRIPTAALLPGAPRASPETSIPGHLCEVCLDAPAVGLQPAPWGGEMGVCPACGGLEPAAPARPWAVVLACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA
Ga0222625_15009263	3300022195	Groundwater Sediment	MSEPMGGPMRRQRTSGRRNPAPALLPAAQQASYETPLPGHLCEQCMDAPAVTVVAAPWGGKMGVCAACAGLPSDVPAAHQDVVPACLICTAPPGPDEDATAYVQHCFDTGHPLRRGEWQIQRGTRIYL
Ga0207670_105482372	3300025936	Switchgrass Rhizosphere	MREPMRDPMRRPLTRGRRLPPAALLPGAPSARPEPSIPGHLCEACLDAPAVAFVPAPWGGEMGICTACAGLPPPAPDEDATAYMQHCFDTGHPLRPGALRVRPGVRITLRGT
Ga0207703_101462715	3300026035	Switchgrass Rhizosphere	LPPAALLPGAPSARPEPSIPGHLCEACLDAPAVAFVPAPWGGKMGIFTACAGLPPPAPDEDATAYMQHCFDTGHPLRPGALRVRPGVRINLRGT
Ga0207675_1001386682	3300026118	Switchgrass Rhizosphere	MREPMRDPMRRPLTRGRRLPPAALLPGAPSARPEPSIPGHLCEACLDAPAVAFVPAPWGGEMGICTACAGLPPDVPPVHRSVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINL
Ga0209590_101871881	3300027882	Vadose Zone Soil	MSEPMSDPMRRQRTSGRRLTTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCAACGGLAPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA
Ga0207428_101411704	3300027907	Populus Rhizosphere	MSEPMRNPMRRQLTSGRHITPAALLPGAPSASPETSIPGHLCEVCLDAPAVAFVAAPWGGEMGVCAACAGRPPDVPAAHRDVVPACLICAAPPGPDEDATAYVQHCFDTGHPLRPGPWQIPRGTRIYL
Ga0207428_103562271	3300027907	Populus Rhizosphere	MSESMSDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAVCAGLPPPVPAAPRAAVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDLL
Ga0209382_101422183	3300027909	Populus Rhizosphere	MSEPMRDPMQRQLTSGRRSIAALLPEAPSASTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACAGRPPDVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGA
Ga0209382_114031811	3300027909	Populus Rhizosphere	MRRQLTSGRRSIAALLPEAPRPSNESPMPGHLCEICLDAPAMVFVSAPWGGEMGSCAACAGLPPTMPAAHRDVVPACLICADPPGPNEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL
Ga0268264_105994651	3300028381	Switchgrass Rhizosphere	MQRPLTSERRITVALLPEAPRPSTEPSIPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAVPAAPRAVVPGCLICAQPPGPDEDATTYVQHCFDTGHPLRPGALRIRPGVRINL
Ga0307504_100142755	3300028792	Soil	MSEPMSDPMRRQLTSGRRIPTAALLPGAPRASPETSLPGHLCEVCLDAPAVGLQPAPWGGEMGVCPACGGLEPAAPARPWAVVPACPVCVHPPGPEEDATAYVQHCMDSGHPLRPGPWRVPRGTRITLRGA
Ga0318538_107635592	3300031546	Soil	MSEPMRDPMRRHLTSGRRLTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVVFVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGLDEDATAYVQHCFDTG
Ga0310887_103766752	3300031547	Soil	MSESMRDPMQRQFTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGICAACAGLLPAVPAATRAVVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDLL
Ga0310915_112744011	3300031573	Soil	RRPERGREDMRESMQDPMRRQLTSARRITAALLPGVPSPSTETSIPGHLCEVCLDAPAVAFVRAPWGGEMGVCTACAGRPPDVPAAHRDVVPACLVCAAPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL
Ga0306917_101244372	3300031719	Soil	MSEPMRDPMRRQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPTPGGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0306918_101242163	3300031744	Soil	MSEPMRDPMRRQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPVPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0318502_109483652	3300031747	Soil	MSESIRDPRRQRTSGQRSIVALLPEAQRSRHASPMPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAEPAAPQNAEPACLICTQPPGPDEDATAYVQHCFDTGHLLRPG
Ga0306925_111593071	3300031890	Soil	MSEPIRDPMRRQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0310900_107318322	3300031908	Soil	MSESMSDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACGGLPPAEPARAWAVVPACPVCADLPGPEEDATAYVQHCMDSGHPLRPGRWRLRPGTRINLRST
Ga0306923_101715562	3300031910	Soil	MSEPMRDPMRRHLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0306923_114130471	3300031910	Soil	MSESIRDPRRQRTSGQRSIVALLPEAQRSRHASPMPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAEPAAPQNAEPACLICTQPPGPDEDATAYVQHCFDTGHLLRPGPWRIPR
Ga0306921_106382112	3300031912	Soil	VSDPMQRQLTSGRRSTAAALPPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCTACAGRPPDVTAAHRDVVPACLICADPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL
Ga0306921_112363992	3300031912	Soil	MRESMQDPMRRQLTSARRITAALLPGVPSPSTETSIPGHLCEVCLDAPAVAFVRAPWGGEMGVCTACAGRPPDVPAAHRDVVPACLVCAAPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL
Ga0306926_102898613	3300031954	Soil	MSEPMRDPMRRHLTSGRRLTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0306926_114091831	3300031954	Soil	MSEPMRDAMRRQLTSGRRSIAALLPGAPSASTETSIPGHLCEGCLDAPAVAFVPAPCGGEMGVCAACAELPPTVPAVTRAVVPACPLCAQPPGPNEDATTYVQHCFDTGHPLRPGALRVRPGVRINLRGT
Ga0318533_109855381	3300032059	Soil	YGMSEPMRDAMRRQLTSGRRSIAALLPGAPSASTETSIPGHLCEGCLDAPAVAFVPAPCGGEMGVCAACAELPPTVPAVTRAVVPACPLCAQPPGPNEDATTYVQHCFDTGHPLRPGALRVRPGVRINLRGT
Ga0318514_106463812	3300032066	Soil	MSESIRDPRRQRTSGQRSIVALLPEAQRSRHASPMPGHLCEVCLDAPAVAFVPAPWGGEMGSCAACAGLPPAEPAAPQNAEPACLICTQPPGPDEDATAYVQHCFDTGHL
Ga0310890_110142132	3300032075	Soil	RDPMRRQLTSGRRITPAALLPGAPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACGGLPPAEPARAWAVVPACPVCADLPGPEEDATAYVQHCMDSGHPLRPGRWRLRPGTRINLRST
Ga0310890_111467951	3300032075	Soil	MSESMSDPMQRQLTSGRRSPPAALLPGAPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGICAACAGLLPAVPAATRAVVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQERSDLL
Ga0306924_105546092	3300032076	Soil	MSEPMRDPMRRQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0306924_121225782	3300032076	Soil	SDMREPMSDPIRRQLTRGRRSIAALLPEAPRPSHASPIPGHLCEGCLDAPAVAFVPAPWGGEMGVCTACAGRPPDVTAAHRDVVPACLICADPPGPDEDATAYVQHCFDTGHPLRPGPWQIRRGTRIYL
Ga0307472_1012685602	3300032205	Hardwood Forest Soil	MSEPMRDPMRRQLTSGRRITPAALLPGAQSSSPETSIPGHLCEVCLDAPAVAFVPAPWGGEMGVCAACGGLPPAMSAPPGAVVPACLICARPPGPDEDATAYVQHGFDTGHPLRPGPWQIPRGTRIYL
Ga0306920_1015590001	3300032261	Soil	SGRRLTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRGA
Ga0310914_104111232	3300033289	Soil	MSEPMRDPMRRHLTSGRRLTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGLDEDATAYVQHCFDTGHPLRPGALRSRPG
Ga0318519_106496291	3300033290	Soil	RQLTSGRRITPAALLPGEPRPSTETSIPGHLCEVCLDAPAVACVPAPWGGEMGSCAACAGLPPAVPAATRAVVPGCLICAQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRITLRG
Ga0314780_025328_636_1046	3300034659	Soil	MSESMRDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAVAFVPAPWGGEMGICAACAGLLPAVPAATRAVVPGCLICVQPPGPDEDATAYVQHCFDTGHPLRPGALRIRPGVRINLRGASGRSEQ
Ga0314781_076000_3_329	3300034660	Soil	MSESMSDPMQRQLTSGRRSTPAALLPGEPRPSTETSIPGHLCEVCLDAPAMAFVPAPWGGERGVCAGWAGLPPPGPAAPRAAVPACLICAQAPRPDEDAAAYVQHCFDT

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073745

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences