Metagenome / Metatranscriptome Family F073835

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073835
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	81 residues
Representative Sequence	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKVRSYAVRSAPAKTFISSDVALISGLDSGV
Number of Associated Samples	62
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	83.33 %
% of genes near scaffold ends (potentially truncated)	24.17 %
% of genes from short scaffolds (< 2000 bps)	76.67 %
Associated GOLD sequencing projects	56
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (52.500 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (31.667 % of family members)
Environment Ontology (ENVO)	Unclassified (57.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (81.667 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 66.36% β-sheet: 0.00% Coil/Unstructured: 33.64%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF13545	HTH_Crp_2	12.50
PF05532	CsbD	6.67
PF00027	cNMP_binding	1.67
PF00754	F5_F8_type_C	1.67
PF00005	ABC_tran	1.67
PF13502	AsmA_2	0.83
PF01594	AI-2E_transport	0.83
PF14321	DUF4382	0.83
PF00881	Nitroreductase	0.83
PF04366	Ysc84	0.83
PF13188	PAS_8	0.83
PF13401	AAA_22	0.83
PF02602	HEM4	0.83
PF05974	DUF892	0.83
PF02518	HATPase_c	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	6.67
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.83
COG1587	Uroporphyrinogen-III synthase	Coenzyme transport and metabolism [H]	0.83
COG2930	Lipid-binding SYLF domain, Ysc84/FYVE family	Lipid transport and metabolism [I]	0.83
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	52.50 %
Unclassified	root	N/A	47.50 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	52.50 %
Unclassified	root	N/A	47.50 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	52.50 %
Unclassified	root	N/A	47.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.50 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	23.33 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	4.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.50 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	11.67 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5.00 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.67 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	5.00 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.67 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.00 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.67 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	47.50 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	11.67 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5.00 %
Novosphingobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1.67 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001098\|JGI12633J13313_100015	All Organisms → cellular organisms → Bacteria	8932	Open in IMG/M
3300001178\|JGI12646J13576_105322	Not Available	518	Open in IMG/M
3300002245\|JGIcombinedJ26739_100000923	All Organisms → cellular organisms → Bacteria	18185	Open in IMG/M
3300002245\|JGIcombinedJ26739_100507343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1083	Open in IMG/M
3300002245\|JGIcombinedJ26739_100930736	Not Available	752	Open in IMG/M
3300004099\|Ga0058900_1006581	Not Available	815	Open in IMG/M
3300004099\|Ga0058900_1416998	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300004099\|Ga0058900_1424859	Not Available	1081	Open in IMG/M
3300004103\|Ga0058903_1533803	Not Available	669	Open in IMG/M
3300004118\|Ga0058886_1366407	All Organisms → cellular organisms → Bacteria	1374	Open in IMG/M
3300004135\|Ga0058884_1004523	All Organisms → cellular organisms → Bacteria	2440	Open in IMG/M
3300004135\|Ga0058884_1043281	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1746	Open in IMG/M
3300004631\|Ga0058899_10015489	All Organisms → cellular organisms → Bacteria → Proteobacteria	1293	Open in IMG/M
3300004631\|Ga0058899_10054256	Not Available	590	Open in IMG/M
3300004631\|Ga0058899_10099085	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	907	Open in IMG/M
3300004631\|Ga0058899_10105678	Not Available	662	Open in IMG/M
3300004631\|Ga0058899_10115279	Not Available	913	Open in IMG/M
3300004631\|Ga0058899_10126654	Not Available	548	Open in IMG/M
3300004631\|Ga0058899_10172702	All Organisms → cellular organisms → Bacteria	1548	Open in IMG/M
3300004631\|Ga0058899_10185787	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1048	Open in IMG/M
3300004631\|Ga0058899_10210754	Not Available	554	Open in IMG/M
3300004631\|Ga0058899_12197412	Not Available	700	Open in IMG/M
3300004631\|Ga0058899_12288332	All Organisms → cellular organisms → Bacteria → Acidobacteria	1276	Open in IMG/M
3300005434\|Ga0070709_10399433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	1026	Open in IMG/M
3300005439\|Ga0070711_100903261	Not Available	754	Open in IMG/M
3300005536\|Ga0070697_100182034	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1781	Open in IMG/M
3300005538\|Ga0070731_10041843	All Organisms → cellular organisms → Bacteria	3068	Open in IMG/M
3300005542\|Ga0070732_10058512	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2235	Open in IMG/M
3300005542\|Ga0070732_10090471	Not Available	1797	Open in IMG/M
3300005542\|Ga0070732_10444496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Novosphingobium	784	Open in IMG/M
3300005602\|Ga0070762_10234374	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1135	Open in IMG/M
3300005602\|Ga0070762_10310771	Not Available	996	Open in IMG/M
3300005602\|Ga0070762_10635208	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300005602\|Ga0070762_11225087	Not Available	520	Open in IMG/M
3300005610\|Ga0070763_10320918	Not Available	856	Open in IMG/M
3300005921\|Ga0070766_10129935	Not Available	1523	Open in IMG/M
3300005921\|Ga0070766_10583859	Not Available	749	Open in IMG/M
3300005921\|Ga0070766_10665242	All Organisms → cellular organisms → Bacteria → Acidobacteria	703	Open in IMG/M
3300006175\|Ga0070712_101635196	Not Available	563	Open in IMG/M
3300006176\|Ga0070765_100358406	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1356	Open in IMG/M
3300006176\|Ga0070765_100954274	Not Available	811	Open in IMG/M
3300006176\|Ga0070765_102051500	Not Available	535	Open in IMG/M
3300006893\|Ga0073928_10001567	All Organisms → cellular organisms → Bacteria	43324	Open in IMG/M
3300006893\|Ga0073928_10008907	All Organisms → cellular organisms → Bacteria	12396	Open in IMG/M
3300011120\|Ga0150983_10658769	Not Available	1217	Open in IMG/M
3300011120\|Ga0150983_11902269	Not Available	586	Open in IMG/M
3300011120\|Ga0150983_12311429	Not Available	576	Open in IMG/M
3300011120\|Ga0150983_12404161	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2960	Open in IMG/M
3300011120\|Ga0150983_12505292	Not Available	517	Open in IMG/M
3300011120\|Ga0150983_12567297	Not Available	520	Open in IMG/M
3300011120\|Ga0150983_15239756	Not Available	859	Open in IMG/M
3300011120\|Ga0150983_15971181	Not Available	502	Open in IMG/M
3300011120\|Ga0150983_16527074	Not Available	1584	Open in IMG/M
3300012205\|Ga0137362_10831602	All Organisms → cellular organisms → Bacteria	790	Open in IMG/M
3300020579\|Ga0210407_10118316	All Organisms → cellular organisms → Bacteria → Acidobacteria	2025	Open in IMG/M
3300020579\|Ga0210407_10279473	Not Available	1302	Open in IMG/M
3300020579\|Ga0210407_10563888	All Organisms → cellular organisms → Bacteria → Acidobacteria	889	Open in IMG/M
3300020580\|Ga0210403_10339957	All Organisms → cellular organisms → Bacteria	1229	Open in IMG/M
3300020581\|Ga0210399_10034784	All Organisms → cellular organisms → Bacteria	4031	Open in IMG/M
3300020581\|Ga0210399_10056798	All Organisms → cellular organisms → Bacteria → Acidobacteria	3153	Open in IMG/M
3300020581\|Ga0210399_11016505	Not Available	667	Open in IMG/M
3300020582\|Ga0210395_10102216	All Organisms → cellular organisms → Bacteria	2121	Open in IMG/M
3300020583\|Ga0210401_10017988	All Organisms → cellular organisms → Bacteria → Acidobacteria	6819	Open in IMG/M
3300020583\|Ga0210401_10023803	All Organisms → cellular organisms → Bacteria → Acidobacteria	5869	Open in IMG/M
3300020583\|Ga0210401_10059147	All Organisms → cellular organisms → Bacteria	3610	Open in IMG/M
3300020583\|Ga0210401_11379165	Not Available	562	Open in IMG/M
3300020583\|Ga0210401_11544708	Not Available	521	Open in IMG/M
3300021168\|Ga0210406_10108621	All Organisms → cellular organisms → Bacteria	2352	Open in IMG/M
3300021168\|Ga0210406_10249578	All Organisms → cellular organisms → Bacteria	1456	Open in IMG/M
3300021171\|Ga0210405_10024519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4863	Open in IMG/M
3300021171\|Ga0210405_11120019	Not Available	587	Open in IMG/M
3300021180\|Ga0210396_11224645	Not Available	627	Open in IMG/M
3300021401\|Ga0210393_10457571	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1042	Open in IMG/M
3300021401\|Ga0210393_10938390	Not Available	702	Open in IMG/M
3300021402\|Ga0210385_10628850	Not Available	819	Open in IMG/M
3300021403\|Ga0210397_10921488	Not Available	677	Open in IMG/M
3300021404\|Ga0210389_10085101	All Organisms → cellular organisms → Bacteria	2430	Open in IMG/M
3300021405\|Ga0210387_11549130	Not Available	566	Open in IMG/M
3300021406\|Ga0210386_10686318	Not Available	883	Open in IMG/M
3300021420\|Ga0210394_10004627	All Organisms → cellular organisms → Bacteria	15908	Open in IMG/M
3300021420\|Ga0210394_10005761	All Organisms → cellular organisms → Bacteria	13739	Open in IMG/M
3300021420\|Ga0210394_11429679	Not Available	587	Open in IMG/M
3300021432\|Ga0210384_11323162	Not Available	625	Open in IMG/M
3300021475\|Ga0210392_10844672	Not Available	684	Open in IMG/M
3300021477\|Ga0210398_10284774	All Organisms → cellular organisms → Bacteria	1348	Open in IMG/M
3300021479\|Ga0210410_10034540	All Organisms → cellular organisms → Bacteria → Proteobacteria	4390	Open in IMG/M
3300022557\|Ga0212123_10000114	All Organisms → cellular organisms → Bacteria	271243	Open in IMG/M
3300022557\|Ga0212123_10000614	All Organisms → cellular organisms → Bacteria	112812	Open in IMG/M
3300025906\|Ga0207699_10522882	All Organisms → cellular organisms → Bacteria	858	Open in IMG/M
3300027109\|Ga0208603_1002626	All Organisms → cellular organisms → Bacteria	2987	Open in IMG/M
3300027545\|Ga0209008_1000554	All Organisms → cellular organisms → Bacteria	11480	Open in IMG/M
3300027605\|Ga0209329_1001559	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3392	Open in IMG/M
3300027605\|Ga0209329_1049099	All Organisms → cellular organisms → Bacteria	898	Open in IMG/M
3300027684\|Ga0209626_1107913	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	724	Open in IMG/M
3300027842\|Ga0209580_10074063	Not Available	1619	Open in IMG/M
3300027842\|Ga0209580_10181919	Not Available	1040	Open in IMG/M
3300027867\|Ga0209167_10197702	All Organisms → cellular organisms → Bacteria → Acidobacteria	1069	Open in IMG/M
3300027869\|Ga0209579_10014362	All Organisms → cellular organisms → Bacteria	4660	Open in IMG/M
3300027889\|Ga0209380_10341253	Not Available	880	Open in IMG/M
3300027889\|Ga0209380_10610394	Not Available	631	Open in IMG/M
3300027889\|Ga0209380_10672493	Not Available	596	Open in IMG/M
3300027908\|Ga0209006_10238201	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1569	Open in IMG/M
3300028023\|Ga0265357_1025148	Not Available	666	Open in IMG/M
3300028023\|Ga0265357_1027783	Not Available	639	Open in IMG/M
3300028906\|Ga0308309_10185472	All Organisms → cellular organisms → Bacteria	1703	Open in IMG/M
3300028906\|Ga0308309_10507886	Not Available	1042	Open in IMG/M
3300028906\|Ga0308309_11485232	Not Available	579	Open in IMG/M
3300030862\|Ga0265753_1010802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1197	Open in IMG/M
3300031231\|Ga0170824_103464045	Not Available	549	Open in IMG/M
3300031231\|Ga0170824_108844052	Not Available	530	Open in IMG/M
3300031231\|Ga0170824_125516576	Not Available	509	Open in IMG/M
3300031708\|Ga0310686_111909955	Not Available	943	Open in IMG/M
3300031715\|Ga0307476_10142154	All Organisms → cellular organisms → Bacteria	1719	Open in IMG/M
3300031718\|Ga0307474_11425793	Not Available	546	Open in IMG/M
3300031720\|Ga0307469_10047653	All Organisms → cellular organisms → Bacteria → Proteobacteria	2665	Open in IMG/M
3300031720\|Ga0307469_10490007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1074	Open in IMG/M
3300031962\|Ga0307479_11475998	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	637	Open in IMG/M
3300032180\|Ga0307471_100407170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1489	Open in IMG/M
3300032180\|Ga0307471_102332399	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300032205\|Ga0307472_100183163	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1572	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.00%
Aquatic	Environmental → Aquatic	3.33%
Plants	Host-Associated → Plants	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.00%
Thermal Springs	Environmental → Aquatic → Thermal Springs	3.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.67%

Habitat	Taxonomy	Distribution
Loam	Environmental → Terrestrial → Soil → Loam	50.00%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	45.00%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	3.33%
Soil	Host-Associated → Plants → Rhizosphere → Soil	1.67%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	45.83%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	35.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	9.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.17%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	3.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	1.67%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	31.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	26.67%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	14.17%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	6.67%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.17%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	3.33%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	1.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001098	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O1	Environmental	Open in IMG/M
3300001178	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004099	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF236 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004103	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF242 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004118	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF208 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004135	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF204 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004631	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF234 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005921	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021401	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-O	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021475	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027109	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF008 (SPAdes)	Environmental	Open in IMG/M
3300027545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027684	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027867	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027869	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300027908	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300028023	Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5	Host-Associated	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300030862	Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12633J13313_10001511	3300001098	Forest Soil	MAFAPFNAVLPVIAAFVIFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKIRTYAMKSALAKTLISSDCALTSGLDSRSLTAIGGRS*
JGI12646J13576_1053222	3300001178	Forest Soil	MTFAPFNVALQVIAAFAIFVLGYVALLVSLVICLAVSLAIGKGINEGARQLLAFAVRSAPAKTFISSDVPLISGLDSGVNCN*
JGIcombinedJ26739_10000092321	3300002245	Forest Soil	MAFAPFNAVLPVIAAFVIFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKIRTYAMKSALAKTXISSDCALTSGLDSRSLTAIGGRS*
JGIcombinedJ26739_1005073433	3300002245	Forest Soil	MGFAPFNAVLPVIAAFVVFIFGYVALFVFLMICFFVCLVITKGIYEGAKKVRTYAMKSAPAETFISADVVLISGLELTAIGGKS*
JGIcombinedJ26739_1009307362	3300002245	Forest Soil	MAFAPLNAVLPVIAAFVVFIFGYVALFVSLMICFFVCLVIARGVYVGAKKVRTYAMKSAPAKTFISADVTLISGLD*
Ga0058900_10065812	3300004099	Forest Soil	MAFAPFNAVLPVIAALVFFIFGYVALFVSLMICFFVCLVIAKSIYEGGKKVRTCAMKSAAAKTFLSSDVDTSDHRKRPFVIPALR*
Ga0058900_14169982	3300004099	Forest Soil	MTFAPFNIALQVIAAFAIFIFGYVALFVSLMIWFFLCLVIAKGVYEGAKKVRTYAMKSASDVDTSDHRKRPFLIPALR*
Ga0058900_14248592	3300004099	Forest Soil	MAFAPFNAVLPVIAAFVVFILGYVALFVSLMIWFFVCLVIAKGIYEGAKKVRSYTKRSTAAKTFIASDVALIPGLDSGLIATGGRS*
Ga0058903_15338032	3300004103	Forest Soil	MAFAPFNAVLAVIAALVVFIFGYVALFVSLMVYFFVCLVIAKGIYEGGKKVRTYAMKSPAAKTFLSSDVDTSDHRKRLIPALR*
Ga0058886_13664071	3300004118	Forest Soil	SPMAFAPFNVAIQVIAAFAIFIFGYVALFVSLVMCLAVSLAIGKGISEGARRLRAYAARSAPAKTFISSDVALISGSDSGV*
Ga0058884_10045233	3300004135	Forest Soil	MAFAPFNIALQVIAAFVIFIFGYVALFVSLIVCLAVSLAIGKGIREGARRVRAYAVKSAPAKTFISSNVDTPDHRKKPFLIPAWR*
Ga0058884_10432813	3300004135	Forest Soil	MAFAPFNSVVPVIAAFVVFIFGYVALFVALTICLAVSLAIGKGIYEVTRRVRAYAVRSDPAKNFISSDVDIPNNRKKRFLIPAWR*
Ga0058899_100154892	3300004631	Forest Soil	MAFAPVNLALQVIAAFVIFVFGYVALFVSLVICLAVSFGIGKGIHEGARRVRAYAVRAAPAKIFISADGALAPGLTVIRR*
Ga0058899_100542561	3300004631	Forest Soil	MAFAPFNAVLAVIAALVVFIFGYVALFVFFMICFFICLVIAKGIYEGGKKVRTYAMKSPAAKTFLSSDVDTSDHRKTPFLIPASR*
Ga0058899_100990851	3300004631	Forest Soil	LPVIAALVFFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKVRSYTMRSAPAKTFISAEVAMIPGLELTAIGGKS*
Ga0058899_101056781	3300004631	Forest Soil	LVFFIFGYVALFVSLMICFFVCLVIAKGIYEGGKKVRTCAMKSAAAKTFLSSDVDTSDHRKRLIPALR*
Ga0058899_101152791	3300004631	Forest Soil	PNIALQVIAAFVIFIFGYVALFVSLIICLAVCLAIGSGVYEGTRRVQAYAVRSAPSKTFVSSDVALISGLGSGTAI*
Ga0058899_101266541	3300004631	Forest Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMICLFVCLAVAKGIYEGAKKVRTYAMKSAAAKTFPSSGVDTSDHRKRPFLIPALR*
Ga0058899_101727022	3300004631	Forest Soil	MAFAPFNAVLPVIAAFVVFILGYVALFVSLMICFFPCLVIAKGVYEGAKKVRTYAMKSDPAMTFLSSDVDTSDHRKRPFLIPALR*
Ga0058899_101857872	3300004631	Forest Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMIWFFVCMVIAKGICEGWKKVRSYTKRSTPAETFISSDVALISGLNSGV*
Ga0058899_102107542	3300004631	Forest Soil	MTFAPFNVALQVIAAFAIFVFGYVALFVSSMICFSVCLVIARGIYEGAKKVRSYTMRSAPAKTFISAEVAMIPGLELTAIG
Ga0058899_121974121	3300004631	Forest Soil	MAFAPFNAVLPVIAALAVFIFGYVALFVSLMICFFLCLVIAKGIYEGAKKVRTYAMRSALAKTFISSDVGLTSGLDSRSLTEIGGRS*
Ga0058899_122883321	3300004631	Forest Soil	NLALQVIAAFVIFIFGYVALFVSLVICLAVSLAIGKGIYEGARRVRAYAVRSASAKTLVSSDAALAPGATAIGR*
Ga0070709_103994332	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	MTFAPFNIAVQVIAAFVIFVFGYVALFVSLIICLAVSLAIGKGIYECARQVRAYAVRSAPAKTFVSSDVALIPGLAAIGGRS*
Ga0070711_1009032611	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTFAPFNIALQVIAAFVIFVFGYVALFVSLIICLAVSLAIGKGIYECARRVRAYAVRSAPAKIFVSSDVALIPGLTAIGGR*
Ga0070697_1001820343	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MAFAPFNIALQVIAAFVIFIFGYVALFVSLIICLAVSLAIGKGIYEGARRVRAYAVRSASEKTFISTDVDTPDHRKKHSLIPAWR*
Ga0070731_100418434	3300005538	Surface Soil	MTFAPFNIALQVIAAFAIFIFGYVALFVSLMICLFVCLVIAKGVYEGAKKVRTYAMKTTSDVDNSDHRKRALLIPALR*
Ga0070732_100585121	3300005542	Surface Soil	MPFAPFNFVLQVIAAFTIFIFGYVALFVSSVICFSVCLLIARGIYEGVKKVRSYTMRSALAKTFVSADVAMIPGLELTAIGGKS*
Ga0070732_100904713	3300005542	Surface Soil	MALAPLNAVLPVIAAFVVFILAYVALFVSLMICFFVCLVIAKGIYVGAKKVRTYAMKSAPAKTFISADIALISGFD*
Ga0070732_104444962	3300005542	Surface Soil	MTFAPFNIALQVIAAFVIFVFGYVALFVSLIICLAVSLAIGKGVYECARRVRAYAVRSAPAKIFVSSDVALIPGLTAIGGR*
Ga0070762_102343742	3300005602	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFISLMICFFVCLVIAKSIYEGGKKVRTCAMKSAAAKTFLSSDVDTSDHRKTPFLIPASR*
Ga0070762_103107711	3300005602	Soil	MAFAPFNVAIQVIAAFAIFIFGYVALFVSLVMCLAVNLAIGKGISEGARRLRAYAARSAPAKTFISSDVALISGLDSGV*
Ga0070762_106352082	3300005602	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMICFFVCLVIAKGIYEGTKKVRSYTMKSAPAKTFISADVALIPVLELTAIGGKS*
Ga0070762_112250872	3300005602	Soil	MAFAPFNAVLPVIAALVFFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKVRSYTKRSTPAKTFISSDVALIPGLDSGLIATGGRS*
Ga0070763_103209181	3300005610	Soil	MAFAPFNALLPVIAALVVFIFGYVALFVSLMICFFVCLVIAKGMYEGGKKIRTYAMKSAAAKTFLSSDVDTSDHRKTPFLIPASR*
Ga0070766_101299354	3300005921	Soil	MAFAPFNVALQVIAAFAIFVFGYIALFVSLIICLAVSLAIGKGIYEGARRLRAYAARSAPKTFISSDVALISGLDSG
Ga0070766_105838591	3300005921	Soil	MTLAPFNIALQVIAAFAIFVFGYVALSVSLIICLAVCFAIGEGVYEGAKKVRTYAMKSAPAKTFISADVALIS*
Ga0070766_106652422	3300005921	Soil	MTFAPFNVALQVIAAFAIFVFGYVALFVSSMICFSVCLMIARGIYEGAKKVRSYTMRSAPAKTFISAEVAMIPGLELTAIGVKS*
Ga0070712_1016351961	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MAFAPFNIALQVIAAFAIFIFGYVALFVSLIICLAVSLAIGKGIYEGARRVRAYAVRSASEKTFISSDVDTPD
Ga0070765_1003584062	3300006176	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFISLMICFFVCLVIAKSIYEGGKKVRTCAMKSAAAKTFLSSDVDTSDHRKRPFVIPALR*
Ga0070765_1009542742	3300006176	Soil	MAFAPFNAVLPVIAAFVVFILGYVALFVSLMIWFFVCLVIAKGIYEGAKKVRSYTKRSTPAKTFISSDVALIPGLDSGLFATGGRS*
Ga0070765_1020515001	3300006176	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKVRSYAVRSAPAKTFISSDVALISGLDSGV*
Ga0073928_1000156739	3300006893	Iron-Sulfur Acid Spring	MAFAPFNVALQVIAAFGIFVLGYVTLLVSLVICLGVSLAIGKGIREGARRVRAYAVRSAPAKTFISSDVDTPDHRKKPTFIPVWR*
Ga0073928_1000890714	3300006893	Iron-Sulfur Acid Spring	MAFAPFNIALQVIAAFVIFIFGYVALFVSLIICLAVSLAIGKGIYEGARRVRAYTVRSAPAKTFISSDVDTPDHRKKPFLIPAWR*
Ga0150983_106587692	3300011120	Forest Soil	MTFAPFNIALQVIAAFAIFTFGYLALFVSLMICFFVCLLIAKGVYEGAKKVRTYAMKSASDVDNSDHRKRALLIPALR*
Ga0150983_119022692	3300011120	Forest Soil	ALAVFIFGYVALFVSLMICFFLCLVIAKGIYEGAKKVRTYAMRSALAKTFISSDVGLTSGLDSRSLTEIGGRS*
Ga0150983_123114291	3300011120	Forest Soil	MTFAPFNVALQVIAAFAIFVFGYVALFVSSMICFSVCLVIARGIYEGAKKVRSYTMRSAPAKTFISAEVAMIPGLELTAIGGKS*
Ga0150983_124041614	3300011120	Forest Soil	MAFAPLNLALQVIAAFVIFIFGYVALFVSLVICLAVSLAIGKGIYEGARRVRAYAVRSASAKTLVSSDAALAPGATAIGR*
Ga0150983_125052922	3300011120	Forest Soil	VIFVFGYVALFVSLIICLAVSLAIGKGIYECARRVRAYAVTSAPAKIFVSSDVALIPGLTAIGGR*
Ga0150983_125672972	3300011120	Forest Soil	ESSPMTFAPFNIALQVIAAFAIFIFGYVALFVSLMICLFVCLVIAKGVYEGAKKVRTYAMKTTSDVDNSDHRKRALLIPALR*
Ga0150983_152397561	3300011120	Forest Soil	MALAPNIALQVIAAFVIFIFGYVALFVSLIICLAVCLAIGSGVYEGTRRVQAYAVRSAPSKTFVSSDVALISGLGSGTAI*
Ga0150983_159711812	3300011120	Forest Soil	LPVIAALVFFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKVRSYAMRSAPANTFISSDVDTLDHRKRPLLIPALR*
Ga0150983_165270743	3300011120	Forest Soil	MTFAPFNVALQVIAAFTIFILGYVSLFVSLMICLFICLAVAKGIYEGAKKVRTYAMKSASAKAFLLSNGALISGTD*
Ga0137362_108316021	3300012205	Vadose Zone Soil	MAFAPFNIALQVIAAFVIFIFGYVALFVSLITCLAVSLAIGKGIYEGARRVRAYAVRSASEKTFISSDVDTPDHRKKHSLIPAWR*
Ga0210407_101183163	3300020579	Soil	MAFAPFNVAIQVIAAFAIFIFGYVALFVSLVMCLAVSLAIGKGISEGARRLRAYAARSAPAKTFISSDVALISGLDSGV
Ga0210407_102794733	3300020579	Soil	MTFAPFNIALQVIAAFAIFTFGYLALFVSLMICFFVCLLIAKGVYEGAKKVRTYAMKSSSDVDNSDHRKRALLIPALR
Ga0210407_105638882	3300020579	Soil	MTFAPFNVALQVIAAFAIFVFGYVALFVSSMICFSVCLVIARGIYEGAKKVRSYTMRSAPAKTFISSDVALIPELDSGLVATGGRS
Ga0210403_103399572	3300020580	Soil	MNFAPFNFALQVIAAFTIFIFGYVALFLSSMICFSVCLVIARGIYESAKKVRSYMMRSSPAKTDVGLISGLELTAIGGKS
Ga0210399_100347846	3300020581	Soil	MTFAPFNIALQVIAAFAIFTFGYLALFVSLMICFFVCLLIAKGVYEGAKKIRTYAMKSSSDVDNSDHRKRALLIPALR
Ga0210399_100567984	3300020581	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFISLMICFFVCLVIAKSIYEGGKKVRTCAMKSAAAKTFLSSDVDTSDHRKRPFVIPALR
Ga0210399_110165052	3300020581	Soil	MTFAPFNVALQVIAAFAIFVFGYVALFVSSMICFSVCLVIARGIYEGAKKVRSYTMRSAPAKTFISAEVAMIPGLELTAIGGKS
Ga0210395_101022164	3300020582	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMIWFFVCLVIAKGIYEGAKKVRSYTKRSTPAKTFISSDVALIPGLDSGLIATGGRS
Ga0210401_100179886	3300020583	Soil	MAFAPFNAVLPVIAAFVIFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKIRTYAMKSALAKTFISSDCALTSGLDSRSLTAIGGRS
Ga0210401_100238038	3300020583	Soil	MTFAPFNIALQVIAAFAIFTFGYLALFVSLMICFFVCLLIAKGVYEGAKKVRTYAMKSASDVDNSDHRKRALLIPALR
Ga0210401_100591474	3300020583	Soil	MTFAPFNIAAQVIAAFVIFVFGYVALFVSLIICLAVSLAIGKGMYECARRVRAYAVRSAPAKTFVSSDVALIPGLTAIGGRS
Ga0210401_113791651	3300020583	Soil	FNAVLPVIAAFVVFIFAYVALFVSSMICFSVCLVIARGIYEGAKKVRSYTMRSAPAKTFISSDVALIPELDSGLIATGGRS
Ga0210401_115447081	3300020583	Soil	MAFAPLNAVLPVIAAFVVFILGYVALFVSLMIWFFVCLVIAKGIYEGAKKVRSYTRRSTAAKTFIVSDVALIPGLDSGLIATGGRS
Ga0210406_101086212	3300021168	Soil	MNFAPFNFALQVIAAFTIFIFGYVALFLSSMICFSVCLVIARGIYESAKKVRSYMMRSSPTKTDVGLISGLELTAIGGKS
Ga0210406_102495781	3300021168	Soil	MAFAPFNVAIQVIAAFAIFIFGYVALFVSLVMCLAVSLAIGKGISEGARRLRAYAARSAPAKTFISSDVALISGSDSGV
Ga0210405_100245197	3300021171	Soil	MTFAPFNIALQVIAAFAIFIFGYVALFVSLMIWFFLCLVIAKGVYEGAKKVRTYAMKSASDVDTSDHRKRPFLIPALR
Ga0210405_111200192	3300021171	Soil	MNFAPFNFALQVIAAFTIFILGYLALFVSSMICFSVCLVIARGIYESAKKVRSYTMRSSPAKIDVALIPGLELTAI
Ga0210396_112246452	3300021180	Soil	FAPFNIALQVIAAFAIFTFGYLALFVSLMICFFVCLLIAKGVYEGAKKVRTYAMKSASDVDNSDHRKRALLIPALR
Ga0210393_104575712	3300021401	Soil	MPFAPFNFALQVTAAFTIFIFGYVALFVSSMICFSVCLVIARGIYEGAKKVRSYTMRSAPAKTFISSDVALIPELDSGLIATGGRS
Ga0210393_109383902	3300021401	Soil	MNFAPFNFALQVIAAFTIFIFGYVALFLSSMICFSVCLVIARGIYESAKKVRSYTMRSSPANTDVALIPGLELTAIGGKS
Ga0210385_106288501	3300021402	Soil	MTFAPFNIALQVIAAFAIFIFGYVALFVSLMIWFFLCLVIAKGVYEGAKKVRTYAMKSASDVDTSDHTKRPFLIPALR
Ga0210397_109214881	3300021403	Soil	AKRSPMAFAPFNTAVAVIAAFVVFVLGYVALFVSLMICFFLCLVITKGIYEGAKKVRTYAMRSAPANTFISSDVDTSDHRKRPLLIPALR
Ga0210389_100851013	3300021404	Soil	MPFAPFNFALQVIAAFTIFIFGYVALFVSSMICFSVCLVIARGIYEGAKKVRSYTMRSAPAKTFISSDVALIPELDSGLIATGGRS
Ga0210387_115491301	3300021405	Soil	MAFAPFNAVLPVIAAFVVFIFAYVALFVSSMICFSVCLVIARGIYEGAKKVRSYTMRSAPAKTFISSDVALIPELDSGLIATGGRS
Ga0210386_106863182	3300021406	Soil	MTFAPFNFALQVTAAFTIFIFGYVALFVSSMICFSVCLVIARGIYEGAKKVRSYMMRSAPAKTFISSDVALISELDSGSIA
Ga0210394_1000462713	3300021420	Soil	MPFAPFNFVLQVIAAFTIFIFGYVALFVSSVICFSVCLLIARGIYEGVKKVRSYTMRSALAKTFVSADVAMIPGLELTAIGGKS
Ga0210394_1000576122	3300021420	Soil	MAFAPFNAVLPVIAALVFFIFGYVALFVSLMICFFVCLVIAKGIYEGGKKVRTCAMKSAAAKTFLSSDVDTSDHRKRLIPALR
Ga0210394_114296792	3300021420	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKIRTYAMKSALAKTFISSDCALTSGLDSRSLTAIGGRS
Ga0210384_113231622	3300021432	Soil	MAFAPFNAVLPVIAAFVVFILGYVALFVSLMIWFFVCLVIAKGIYEGAKKVRSYTKRSTAAKTFIASDVALIPGLDSGLIATGGRS
Ga0210392_108446722	3300021475	Soil	TFGYLALFVSLMICFFVCLLIAKGVYEGAKKVRTYAMKSASDVDNSDHRKRALLIPALR
Ga0210398_102847742	3300021477	Soil	MTFAPFNFALQVTAAFTIFIFGYVALFVSSMICFSVCLVIARGIYEGAKKVRSYMMRSAPAKTFISSDVALISELDSGSIATGGRS
Ga0210410_100345405	3300021479	Soil	MAFAPFNVAIQVIAAFAIFIFGYVALFVSLVMCLAVNLAIGKGISEGARRLRAYAARSAPAKTFISSDVALISGLDSGV
Ga0212123_10000114261	3300022557	Iron-Sulfur Acid Spring	MAFAPFNVALQVIAAFGIFVLGYVTLLVSLVICLGVSLAIGKGIREGARRVRAYAVRSAPAKTFISSDVDTPDHRKKPTFIPVWR
Ga0212123_1000061477	3300022557	Iron-Sulfur Acid Spring	MAFAPFNIALQVIAAFVIFIFGYVALFVSLIICLAVSLAIGKGIYEGARRVRAYTVRSAPAKTFISSDVDTPDHRKKPFLIPAWR
Ga0207699_105228822	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TFAPFNIALQVIAAFVIFVFGYVALFVSLIICLAVSLAIGKGIYECARQVRAYAVRSAPAKTFVSSDVALIPGLAAIGGRS
Ga0208603_10026261	3300027109	Forest Soil	MAFAPFNAVLPVIAALVFFIFGYVALFVSLMICFFVCLVIAKSIYEGGKKVRTCAMKSAAAKTFLSSDVDTSDHRKRPFVIPALR
Ga0209008_100055413	3300027545	Forest Soil	MAFAPFNAVLPVIAAFVIFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKIRTYAMKSALAKTLISSDCALTSGLDSRSLTAIGGRS
Ga0209329_10015595	3300027605	Forest Soil	MTFAPFNVALQVIAAFAIFVLGYVALLVSLVICLAVSLAIGKGINEGARQLLAFAVRSAPAKTFISSDVPLISGLDSGVNCN
Ga0209329_10490992	3300027605	Forest Soil	MTFAPFNVALQVIAAFVVFIFGYVALFVSLMICFFLCLVIAKGIYEGAKKVRTFAMRSALAKTFTSSDVALISGLELTAIGGKS
Ga0209626_11079131	3300027684	Forest Soil	MAFAPLNAVLPVIAAFVVFIFGYVALFVSLIICLAVSLAIGKGISEGARRVRAYAVRSASAKTFISSDVDTPDHKKHSLIPAWR
Ga0209580_100740631	3300027842	Surface Soil	MALAPLNAVLPVIAAFVVFILAYVALFVSLMICFFVCLVIAKGIYVGAKKVRTYAMKSAPAKTFISADIALISGFD
Ga0209580_101819191	3300027842	Surface Soil	MTFAPFNIALQVIAAFVIFVFGYVALFVSLIICLAVSLAIGKGVYECARRVRAYAVRSAPAKIFVSSDVALIPGLTAIGGR
Ga0209167_101977022	3300027867	Surface Soil	MNLAPFNAVLPVIAAFVIFIFGYVALFISLMICFFVCLLIAKGIYEGAKKARTYAVRSAPAKTFISPDVDTSDHRKTPLLIPATSR
Ga0209579_100143626	3300027869	Surface Soil	MTFAPFNIALQVIAAFAIFIFGYVALFVSLMICLFVCLVIAKGVYEGAKKVRTYAMKTTSDVDNSDHRKRALLIPALR
Ga0209380_103412531	3300027889	Soil	MTLAPFNIALQVIAAFAIFVFGYVALSVSLIICLAVCFAIGEGVYEGAKKVRTYAMKSAPAKTFISADVALIS
Ga0209380_106103941	3300027889	Soil	MAFAPVNLALQVIAAFVIFVFGYVALFVSLVICLAVSFGIGKGIHEGARRVRAYAVRAAPAKIFISADGALAPGLTVIRR
Ga0209380_106724932	3300027889	Soil	SPMAFAPFNAVLPVIAALVFFIFGYVALFVSLMICFFVCLVIAKGIYEGGKKVRTYAMKSSAAKTFLSSDVDTSDHRKTPFLIPASR
Ga0209006_102382012	3300027908	Forest Soil	MGFAPFNAVLPVIAAFVVFIFGYVALFVFLMICFFVCLVITKGIYEGAKKVRTYAMKSAPAETFISADVVLISGLELTAIGGKS
Ga0265357_10251482	3300028023	Rhizosphere	MTFAPFNVALQVIAAFAIFVFGYVALFVSLFVCFAASLAIGKGLQEGARRVRAYAVRSAPAKTFISSDVALISGLDSGV
Ga0265357_10277832	3300028023	Rhizosphere	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKVRSYTKRSTPAKTFISSDVALIPGLDSGLIATGGRS
Ga0308309_101854721	3300028906	Soil	MAFAPFNAVLPVIAAFVVFILGYVALFVSLMIWFFVCLVIAKGIYEGAKKVRSYTKRSTPAKTFISSDVALIPGLDSGLFATGGRS
Ga0308309_105078862	3300028906	Soil	MTFAPFNVALQVIAAFTIFILGYVSLFVSLMICLFICLAVAKGIYEGAKKVRTYAMKSASAKAFLLSNGALISGTD
Ga0308309_114852322	3300028906	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKVRSYAVRSAPAKTFISSDVALISGLDSGV
Ga0265753_10108021	3300030862	Soil	MAFAPFNAVLPVIAAFVVFIFGYVALFVSLMICFFVCLVIAKGIYEGAKKVRSYTKRSTPAKTFISSDVALIP
Ga0170824_1034640451	3300031231	Forest Soil	MAFAPFNIALQVIAAFVIFIFGYVALFVSLIICLAVCLAIGRGIYEGARRVRAYAVRSAPSKTFVSSDVALIPGLGSGG
Ga0170824_1088440521	3300031231	Forest Soil	EQQACRTAVEIFIFSYVVLFVSLIISLAVSLAIGKAIYEVTRRVRAYAVRSAPAKTFISSDGGPISGWDSGSLTAIGDKS
Ga0170824_1255165761	3300031231	Forest Soil	MTFAPFNIAVQVIAAFVIFVFGYVALFVSLIIGLAVSLAIGKGIYECARRVRAYAVRSAPAKTFISSDVSLIPGLAAIGCRS
Ga0310686_1119099551	3300031708	Soil	MAFAPFNVALQVIAAFAILVFGYIALFVSLIICLAVSLAIGKGIYEGARRVQAYAVRSAPAKTFISSDVALTSGLDSRSLTAIGGR
Ga0307476_101421543	3300031715	Hardwood Forest Soil	MALAPFNVAIQVIAAFAIFIFGYVALFVSLVICLAVSLAIGKGISEGARRLRAYAARSAPAKTFISSDVALISGLDSGV
Ga0307474_114257931	3300031718	Hardwood Forest Soil	MAFAPFNAVLPVIAALVFFIFGYVALFVSLMICFFVCLVIAKGIYEGGKKVRTCAMKSAAAKTFLLSDV
Ga0307469_100476534	3300031720	Hardwood Forest Soil	MAFAPFNIALQVIAAFVIFIFGYVALFVSLIICLAVSLAIGKGIYEGARRVRAYAVRSASEKTFISTDVDTPDHRKKHSLIPAWR
Ga0307469_104900071	3300031720	Hardwood Forest Soil	MAFAPFNIALQVIAAFVIFIFGYIALFVSLIICLAVSLAIGKGIYEGARRVRAYTVRSAPAKTFILSDVDTPDHRKKPFLIPAWR
Ga0307479_114759982	3300031962	Hardwood Forest Soil	PFNIALQVIAAFVIFIFGYVALFVSLVICLAVSLAIGKGIREGVRRLRTYAVRSAPAKTFISSDVDTPDHRKKHSLIPAWR
Ga0307471_1004071701	3300032180	Hardwood Forest Soil	MAFAPFNIALQVIAAFVIFIFGYVALFVSLVICLAVSLAIGKGIREGVRRLRTYAVRSAPAKTFISSDVDTPDHR
Ga0307471_1023323991	3300032180	Hardwood Forest Soil	FNIALQVIAAFVIFIFGYIALFVSLIICLAVSLAIGKGIYEGARRVRAYTVRSAPAKTFILSDVDTPDHRKKPFLIPAWR
Ga0307472_1001831631	3300032205	Hardwood Forest Soil	MTFAPFNIAVQVIAAFVIFVFGYVALFVSLIICLAVSLAIGKGIYECARQVRAYAVRSAPAKTFVSSDVALIPGLAAIGG

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073835

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences