Metagenome Family F073866

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073866
Family Type	Metagenome
Number of Sequences	120
Average Sequence Length	47 residues
Representative Sequence	MTGTGPLIRPMTPADRPALADFPNRVSAGSAIFRFHGSVTVLTDKTLDLL
Number of Associated Samples	97
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	98.33 %
% of genes near scaffold ends (potentially truncated)	99.17 %
% of genes from short scaffolds (< 2000 bps)	93.33 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (50.000 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (58.333 % of family members)
Environment Ontology (ENVO)	Unclassified (55.833 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (52.500 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.00% β-sheet: 8.00% Coil/Unstructured: 48.00%
Feature Viewer

Powered by Feature Viewer

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF08530	PepX_C	7.50
PF00248	Aldo_ket_red	5.00
PF03449	GreA_GreB_N	4.17
PF00528	BPD_transp_1	2.50
PF00196	GerE	1.67
PF03853	YjeF_N	1.67
PF02777	Sod_Fe_C	1.67
PF00398	RrnaAD	0.83
PF00149	Metallophos	0.83
PF00108	Thiolase_N	0.83
PF14832	Tautomerase_3	0.83
PF00903	Glyoxalase	0.83
PF00440	TetR_N	0.83
PF00578	AhpC-TSA	0.83
PF01243	Putative_PNPOx	0.83
PF01522	Polysacc_deac_1	0.83
PF02771	Acyl-CoA_dh_N	0.83
PF13466	STAS_2	0.83
PF12002	MgsA_C	0.83
PF16859	TetR_C_11	0.83
PF01872	RibD_C	0.83
PF08386	Abhydrolase_4	0.83
PF12697	Abhydrolase_6	0.83
PF03466	LysR_substrate	0.83
PF04963	Sigma54_CBD	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG2936	Predicted acyl esterase	General function prediction only [R]	7.50
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	4.17
COG0062	NAD(P)H-hydrate repair enzyme Nnr, NAD(P)H-hydrate epimerase domain	Nucleotide transport and metabolism [F]	1.67
COG0605	Superoxide dismutase	Inorganic ion transport and metabolism [P]	1.67
COG0030	16S rRNA A1518 and A1519 N6-dimethyltransferase RsmA/KsgA/DIM1 (may also have DNA glycosylase/AP lyase activity)	Translation, ribosomal structure and biogenesis [J]	0.83
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.83
COG0262	Dihydrofolate reductase	Coenzyme transport and metabolism [H]	0.83
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.83
COG1508	DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog	Transcription [K]	0.83
COG1960	Acyl-CoA dehydrogenase related to the alkylation response protein AidB	Lipid transport and metabolism [I]	0.83
COG1985	Pyrimidine reductase, riboflavin biosynthesis	Coenzyme transport and metabolism [H]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	50.00 %
Unclassified	root	N/A	50.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	44.17 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	40.00 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	26.67 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
unclassified Actinomycetia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia	4.17 %
Geodermatophilales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales	2.50 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.67 %
Streptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Acidimicrobiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.17 %
Geodermatophilaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae	2.50 %
Acidimicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae	0.83 %
Corynebacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae	0.83 %
Thermomonosporaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.17 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1.67 %
Acidiferrimicrobium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium	0.83 %
Corynebacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium	0.83 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.83 %
Blastococcus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.17 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1.67 %
unclassified Blastococcus	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus	0.83 %
Corynebacterium aurimucosum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium aurimucosum	0.83 %
unclassified Acidiferrimicrobium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium	0.83 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.00 %
Actinomycetia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	4.17 %
Geodermatophilus	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	1.67 %
Blastococcus sp. TF02A-26	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. TF02A-26	0.83 %
Acidiferrimicrobium sp. IK	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	0.83 %
Corynebacterium aurimucosum	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium aurimucosum	0.83 %
Actinomadura	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	0.83 %
Actinomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	0.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.83 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004152\|Ga0062386_100054883	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3004	Open in IMG/M
3300005445\|Ga0070708_100987725	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	789	Open in IMG/M
3300005602\|Ga0070762_10704569	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales	678	Open in IMG/M
3300005712\|Ga0070764_10315734	All Organisms → cellular organisms → Bacteria → Terrabacteria group	905	Open in IMG/M
3300006102\|Ga0075015_100400497	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Corynebacteriaceae → Corynebacterium → Corynebacterium aurimucosum	774	Open in IMG/M
3300006174\|Ga0075014_100908637	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	528	Open in IMG/M
3300009520\|Ga0116214_1203683	Not Available	745	Open in IMG/M
3300010379\|Ga0136449_104637752	Not Available	503	Open in IMG/M
3300014169\|Ga0181531_10308334	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	969	Open in IMG/M
3300016270\|Ga0182036_11894118	Not Available	506	Open in IMG/M
3300016294\|Ga0182041_10573061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	988	Open in IMG/M
3300016319\|Ga0182033_11817345	Not Available	553	Open in IMG/M
3300016341\|Ga0182035_10096684	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2153	Open in IMG/M
3300016387\|Ga0182040_11056026	Not Available	679	Open in IMG/M
3300016387\|Ga0182040_11634739	Not Available	549	Open in IMG/M
3300017926\|Ga0187807_1295566	Not Available	537	Open in IMG/M
3300017973\|Ga0187780_10587952	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	799	Open in IMG/M
3300017974\|Ga0187777_11011187	Not Available	602	Open in IMG/M
3300017974\|Ga0187777_11317128	Not Available	531	Open in IMG/M
3300018042\|Ga0187871_10723158	Not Available	554	Open in IMG/M
3300020581\|Ga0210399_10601319	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	910	Open in IMG/M
3300020582\|Ga0210395_10464390	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	952	Open in IMG/M
3300020583\|Ga0210401_10175760	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → Acidimicrobiales → Acidimicrobiaceae → Acidiferrimicrobium → unclassified Acidiferrimicrobium → Acidiferrimicrobium sp. IK	1996	Open in IMG/M
3300020583\|Ga0210401_10529145	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1041	Open in IMG/M
3300021171\|Ga0210405_10407130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1071	Open in IMG/M
3300021407\|Ga0210383_10992507	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	712	Open in IMG/M
3300021407\|Ga0210383_11552934	Not Available	546	Open in IMG/M
3300021420\|Ga0210394_11529675	Not Available	563	Open in IMG/M
3300021432\|Ga0210384_10796583	Not Available	843	Open in IMG/M
3300021477\|Ga0210398_10454762	Not Available	1043	Open in IMG/M
3300021477\|Ga0210398_10815549	Not Available	751	Open in IMG/M
3300021478\|Ga0210402_10343788	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Blastococcus → unclassified Blastococcus → Blastococcus sp. TF02A-26	1384	Open in IMG/M
3300021478\|Ga0210402_11538604	Not Available	592	Open in IMG/M
3300021559\|Ga0210409_10791357	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	821	Open in IMG/M
3300025906\|Ga0207699_10007039	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptosporangiales → Thermomonosporaceae → Actinomadura	5480	Open in IMG/M
3300025929\|Ga0207664_10296336	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1422	Open in IMG/M
3300027604\|Ga0208324_1101438	Not Available	804	Open in IMG/M
3300027696\|Ga0208696_1181185	Not Available	673	Open in IMG/M
3300027853\|Ga0209274_10220673	Not Available	967	Open in IMG/M
3300027884\|Ga0209275_10102463	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1467	Open in IMG/M
3300027884\|Ga0209275_10658870	Not Available	602	Open in IMG/M
3300028759\|Ga0302224_10267396	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	684	Open in IMG/M
3300028773\|Ga0302234_10392136	Not Available	594	Open in IMG/M
3300028801\|Ga0302226_10225214	Not Available	799	Open in IMG/M
3300028906\|Ga0308309_11539561	Not Available	567	Open in IMG/M
3300029910\|Ga0311369_10363861	Not Available	1268	Open in IMG/M
3300029943\|Ga0311340_10790890	Not Available	801	Open in IMG/M
3300029951\|Ga0311371_10398220	All Organisms → cellular organisms → Bacteria	1874	Open in IMG/M
3300030013\|Ga0302178_10466439	Not Available	554	Open in IMG/M
3300030399\|Ga0311353_10489436	Not Available	1092	Open in IMG/M
3300030520\|Ga0311372_10322338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2416	Open in IMG/M
3300030524\|Ga0311357_11052439	Not Available	712	Open in IMG/M
3300030524\|Ga0311357_11739775	Not Available	520	Open in IMG/M
3300030580\|Ga0311355_10369502	All Organisms → cellular organisms → Bacteria	1414	Open in IMG/M
3300030687\|Ga0302309_10484242	Not Available	592	Open in IMG/M
3300031543\|Ga0318516_10624349	Not Available	614	Open in IMG/M
3300031545\|Ga0318541_10734682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	551	Open in IMG/M
3300031546\|Ga0318538_10019226	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	3015	Open in IMG/M
3300031549\|Ga0318571_10137710	Not Available	833	Open in IMG/M
3300031640\|Ga0318555_10033120	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2531	Open in IMG/M
3300031640\|Ga0318555_10107324	Not Available	1475	Open in IMG/M
3300031668\|Ga0318542_10170435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1089	Open in IMG/M
3300031680\|Ga0318574_10166558	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1257	Open in IMG/M
3300031681\|Ga0318572_10163773	Not Available	1289	Open in IMG/M
3300031681\|Ga0318572_10489131	Not Available	733	Open in IMG/M
3300031708\|Ga0310686_103311662	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	626	Open in IMG/M
3300031708\|Ga0310686_119030267	Not Available	532	Open in IMG/M
3300031713\|Ga0318496_10459096	Not Available	704	Open in IMG/M
3300031719\|Ga0306917_10232517	Not Available	1407	Open in IMG/M
3300031723\|Ga0318493_10128557	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1295	Open in IMG/M
3300031723\|Ga0318493_10609369	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	609	Open in IMG/M
3300031724\|Ga0318500_10069928	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1540	Open in IMG/M
3300031736\|Ga0318501_10217362	Not Available	1004	Open in IMG/M
3300031748\|Ga0318492_10690888	Not Available	546	Open in IMG/M
3300031751\|Ga0318494_10218393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1089	Open in IMG/M
3300031764\|Ga0318535_10400082	Not Available	613	Open in IMG/M
3300031765\|Ga0318554_10441873	Not Available	737	Open in IMG/M
3300031765\|Ga0318554_10650830	Not Available	592	Open in IMG/M
3300031765\|Ga0318554_10797852	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	528	Open in IMG/M
3300031769\|Ga0318526_10485254	Not Available	505	Open in IMG/M
3300031770\|Ga0318521_10483693	All Organisms → cellular organisms → Bacteria	743	Open in IMG/M
3300031770\|Ga0318521_10756597	Not Available	591	Open in IMG/M
3300031771\|Ga0318546_10536924	All Organisms → cellular organisms → Bacteria	821	Open in IMG/M
3300031778\|Ga0318498_10191355	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	929	Open in IMG/M
3300031778\|Ga0318498_10304899	Not Available	714	Open in IMG/M
3300031781\|Ga0318547_10854815	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	567	Open in IMG/M
3300031782\|Ga0318552_10619246	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300031792\|Ga0318529_10297332	Not Available	752	Open in IMG/M
3300031796\|Ga0318576_10526031	Not Available	558	Open in IMG/M
3300031797\|Ga0318550_10462096	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	613	Open in IMG/M
3300031832\|Ga0318499_10434471	Not Available	501	Open in IMG/M
3300031860\|Ga0318495_10289576	Not Available	730	Open in IMG/M
3300031860\|Ga0318495_10331945	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	675	Open in IMG/M
3300031879\|Ga0306919_10275595	Not Available	1271	Open in IMG/M
3300031893\|Ga0318536_10066407	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1767	Open in IMG/M
3300031893\|Ga0318536_10520710	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	597	Open in IMG/M
3300031896\|Ga0318551_10083764	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1674	Open in IMG/M
3300031897\|Ga0318520_10009034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4242	Open in IMG/M
3300031912\|Ga0306921_12024426	Not Available	613	Open in IMG/M
3300032001\|Ga0306922_10049734	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	4334	Open in IMG/M
3300032009\|Ga0318563_10093140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1587	Open in IMG/M
3300032009\|Ga0318563_10105436	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1493	Open in IMG/M
3300032009\|Ga0318563_10583436	Not Available	603	Open in IMG/M
3300032009\|Ga0318563_10658202	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	563	Open in IMG/M
3300032009\|Ga0318563_10790713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Geodermatophilales → Geodermatophilaceae → Geodermatophilus	508	Open in IMG/M
3300032010\|Ga0318569_10163422	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1027	Open in IMG/M
3300032035\|Ga0310911_10473327	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	726	Open in IMG/M
3300032039\|Ga0318559_10447694	Not Available	603	Open in IMG/M
3300032042\|Ga0318545_10282212	Not Available	597	Open in IMG/M
3300032044\|Ga0318558_10195262	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	986	Open in IMG/M
3300032065\|Ga0318513_10370298	Not Available	698	Open in IMG/M
3300032067\|Ga0318524_10646581	Not Available	557	Open in IMG/M
3300032068\|Ga0318553_10063392	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1839	Open in IMG/M
3300032090\|Ga0318518_10080128	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium	1604	Open in IMG/M
3300032261\|Ga0306920_101993847	Not Available	813	Open in IMG/M
3300032954\|Ga0335083_10278130	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1482	Open in IMG/M
3300033158\|Ga0335077_10659575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1083	Open in IMG/M
3300033289\|Ga0310914_10304141	Not Available	1438	Open in IMG/M
3300033289\|Ga0310914_11019144	All Organisms → cellular organisms → Bacteria	728	Open in IMG/M
3300033290\|Ga0318519_10184617	Not Available	1183	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.00%
Aquatic	Environmental → Aquatic	5.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.17%
Peat	Environmental → Terrestrial → Peat	10.83%
Freshwater	Environmental → Aquatic → Freshwater	3.33%
Sediment	Environmental → Aquatic → Sediment	1.67%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	72.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	10.83%
Loam	Environmental → Terrestrial → Soil → Loam	7.50%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	4.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.33%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.67%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	67.50%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	10.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	5.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.00%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	4.17%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.50%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.50%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.67%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	58.33%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	10.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	9.17%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	5.00%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	3.33%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.67%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.67%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	0.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.83%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	0.83%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300009520	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_1_NS metaG	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300017926	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_2	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021477	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300027604	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_5_LS metaG (SPAdes)	Environmental	Open in IMG/M
3300027696	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027884	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes)	Environmental	Open in IMG/M
3300028759	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_1	Environmental	Open in IMG/M
3300028773	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_2	Environmental	Open in IMG/M
3300028801	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E3_3	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300029910	III_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300029943	I_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300029951	III_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030013	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Palsa_E1_3	Environmental	Open in IMG/M
3300030399	II_Palsa_E2 coassembly	Environmental	Open in IMG/M
3300030520	III_Palsa_N2 coassembly	Environmental	Open in IMG/M
3300030524	II_Palsa_N3 coassembly	Environmental	Open in IMG/M
3300030580	II_Palsa_N1 coassembly	Environmental	Open in IMG/M
3300030687	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031549	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031723	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f23	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031769	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f24	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032009	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19	Environmental	Open in IMG/M
3300032010	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f22	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032067	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032954	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.2	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0062386_1000548836	3300004152	Bog Forest Soil	MTGTGPLIRPLTPADRSALADFPNRVSAGSAIFRFHGSVTVLTDK
Ga0070708_1009877252	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MTGTGPLIRPMTPADRSALADFPDRVSAKSAIFRFHGSVTVLTDQTLNLLLDLVDG
Ga0070762_107045693	3300005602	Soil	MTGTGPLIRPLTPADRPALADFPDRVSAGSAIFRFHGSVSVL
Ga0070764_103157343	3300005712	Soil	MTGTGPLIRPLTPADRPALADFPDRVSAGSAIFRFH
Ga0075015_1004004971	3300006102	Watersheds	MTGTGPLIRPMTPADRPALADFPNRVSAGSAIFRFHGSVTVLTDKTLDLLLDL
Ga0075014_1009086371	3300006174	Watersheds	MTGTGPLIRPMTPADRPALADFPNRVSAGSAIFRFHGSVTVLTDKTLDLL
Ga0116214_12036831	3300009520	Peatlands Soil	MTPADRPALADLPNRVSAGSAIFRFHGSVTVLTDKTLNLLLDLV
Ga0136449_1046377521	3300010379	Peatlands Soil	MTPADRPALADFPNRVSAGSAIFRFHGSVTVLTDKTLNLLLDLVDGQR
Ga0181531_103083342	3300014169	Bog	MTGAGPLIRPMTPADRSALADFPDRVSAGSAIFRFHGSVTML
Ga0182036_118941181	3300016270	Soil	VVTTAEEEPVTGTGPLIRPMTPADRPALTDFPDRVSAGSANFRFHGSVTMLTDKTLDL
Ga0182041_105730612	3300016294	Soil	MTGTGPLIRPMTPADRPALANFPDRVSAGSAIFRFHGSLTML
Ga0182033_118173452	3300016319	Soil	MTGTGPLIRPMTPADRSALANFPNRVSAGNAIFRFHGSVTVLTDKT
Ga0182035_100966842	3300016341	Soil	MTGTGPLIRPMTPADRPALTDFPDRVSAGSANFRFH
Ga0182040_110560262	3300016387	Soil	MTGTGPLIRPLTPADRPALADFPDRVSATSANFRFHGSVTMLT
Ga0182040_116347391	3300016387	Soil	MTGPGPLIRPMTPADRSALANFPDRVSAGSAIFRFHGSLTVLTDKTLDLLLDLV
Ga0187807_12955661	3300017926	Freshwater Sediment	MTGTGPLIRPMTPADRSALADFPNRVSAGSAIFRFH
Ga0187780_105879521	3300017973	Tropical Peatland	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVTMLTDQTLDLLLDLVDAD
Ga0187777_110111872	3300017974	Tropical Peatland	MTGTGPLIRPMTPADRPALANFPDRVSAASAIFRFHGSVTMLTD
Ga0187777_113171281	3300017974	Tropical Peatland	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVTMLTDQTLDLLLDLVDG
Ga0187871_107231581	3300018042	Peatland	MTGTGPLIRPMTPADRPALADFPHRVSAGSAIFRFHGSVTVLTDKTLDLLLDLVDGQREA
Ga0210399_106013191	3300020581	Soil	MTGTGPLIRPLTSADRPALADFPDRVSAGSAIFRFHGSVTV
Ga0210395_104643901	3300020582	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVTVLTDKTLDLLLDLVDGQRE
Ga0210401_101757601	3300020583	Soil	MTGTGPLIRPMTPADRSALADFPNRVSAGSAIFRFHG
Ga0210401_105291451	3300020583	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVTVLTDKTLNLLLD
Ga0210405_104071301	3300021171	Soil	MTGTGPLIRPLTPADRSALADFPDRVSAGSAIFRFHGSVTVLTDKTLDLLLDLADGH
Ga0210383_109925071	3300021407	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHG
Ga0210383_115529341	3300021407	Soil	VTGTGPLIRPLTPADRPALADFPDRVSAGSAIFRFHGSVSV
Ga0210394_115296752	3300021420	Soil	MTGTGPLIRPLTPADRSALADFPNRVSAGSAIFRFHGSVT
Ga0210384_107965831	3300021432	Soil	MTGTGPLIRPMTPADRPALADFPNRVSAGSAIFRFHGSVTVLTDKTLDLLLDLVAGQR
Ga0210398_104547621	3300021477	Soil	MTGTGPLIRPMTPADRPALADFPSRVSAGSAIFRFHGSVTVLTDKTLD
Ga0210398_108155491	3300021477	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVTVLTDKTLNLLLDLVDG
Ga0210402_103437881	3300021478	Soil	MTGTGPLIRPMTPADRPALADFPNRVSAGSAIFRFHGSLTVLTDKTLDLLLDLVD
Ga0210402_115386041	3300021478	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVTVLTDKTLNLLLDLVDGQR
Ga0210409_107913572	3300021559	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFH
Ga0207699_100070398	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVT
Ga0207664_102963361	3300025929	Agricultural Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVTVLTDKTLDLL
Ga0208324_11014381	3300027604	Peatlands Soil	MTGTGPLIRPMTPADRSALADFPNRVSAGSAIFRFHGSVTVLTDKTLNLLLDLVDGQREA
Ga0208696_11811851	3300027696	Peatlands Soil	MTGTGPLIRPMTPADRSALADFPNRVSAGSAIFRFHGSVTVLTDKTLNLLLDLV
Ga0209274_102206731	3300027853	Soil	MTGTGPLIRPMTPADRPALADFPHRVSAGSAIFRFHGSLSVLTDKTL
Ga0209275_101024633	3300027884	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSAIFRFHGSVTVLTDKTLNLLLDLVD
Ga0209275_106588702	3300027884	Soil	VTGTGPLIRPLTPADRPALADFPDRVSAGSAIFRFHGSVSVLTDK
Ga0302224_102673961	3300028759	Palsa	MTGTGPLIRPMTPADRSALADFPNRVSAGSAIFRF
Ga0302234_103921362	3300028773	Palsa	MTGPGPLIRPMTPADRPALADFPHRVSAGSAIFRF
Ga0302226_102252142	3300028801	Palsa	MTGAGPLIRPMTPADRPALADFPDRVSAGSAIFRFHGSV
Ga0308309_115395612	3300028906	Soil	MTGTGPLIRPMTPADRSALADFPNRVSAGSAIFRFHGSVTVLTDKTLDLLLDL
Ga0311369_103638611	3300029910	Palsa	MTGTGPLIRPMTPTDRSALADFPNRVSAGSAIFRFHGSVTMLTNKTLDL
Ga0311340_107908901	3300029943	Palsa	MTGAGPLIRPMTPADRSALADFPNRVSAGSAIFRFHGSVAVLTDKTLDL
Ga0311371_103982203	3300029951	Palsa	MTGPGPLIRPMTPADRPALADFPHRVSAGSAIFRFHGSVTMLTDKTLDLLL
Ga0302178_104664391	3300030013	Palsa	MTGAGPLIRPMTPADRSALADFPNRVSAGSAIFRFHGSVA
Ga0311353_104894361	3300030399	Palsa	MTGAGPLIRPMTPADRPALADFPDRVSAGSAIFRFHG
Ga0311372_103223383	3300030520	Palsa	MTGPGPLIRPMTPADRPALADFPHRVSAGSAIFRFHGSVTMLTDKTLDLLLDLL
Ga0311357_110524391	3300030524	Palsa	MTGAGPLIRPMTPADRPALADFPDRVSAGSAIFRFHGSVT
Ga0311357_117397751	3300030524	Palsa	MTGTGPLIRPMTPTDRSALADFPNRVSAGSAIFRFHGSVTMLTNKTL
Ga0311355_103695022	3300030580	Palsa	MTGTGPLIRPMTPTDRSALADFPNRGSAGSAIFRFHGSVTMLTNKTLD
Ga0302309_104842421	3300030687	Palsa	MTGPGPLIRPMTPADRPALADFPHRVSAGSAIFRFHGSVTMLTDKTLDL
Ga0318516_106243491	3300031543	Soil	VVTTAEEEPVTGTGPLIRPMTPADRPALADFPDRVSAGSAIFRFHGSVTMLTDKTLDLLL
Ga0318541_107346821	3300031545	Soil	MTGTGPLIRPLTPADRPALADFPDRVSAASAIFRFHGSLTMLTDQTLDLL
Ga0318538_100192264	3300031546	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSANFRFHG
Ga0318571_101377102	3300031549	Soil	MTGTGPLIRPMTPSDRSALANFPSRVSAGSANFRFHGSLTMLTDQTLDLLLDLADGQR
Ga0318555_100331203	3300031640	Soil	MTGPGPLIRPMTPADRSALANFPDRVSAGSAIFRFHGSLTVLTDKTLDLLLDLVDG
Ga0318555_101073241	3300031640	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSANFRFHGSLTMLTDKTLDLL
Ga0318542_101704352	3300031668	Soil	MTGTGPLIRPMTPADRPALANFPDRVSAGSAIFRFHGSLTMLTDQTLDLLLD
Ga0318574_101665581	3300031680	Soil	MTGAGPLIRPMTPADRPALADFPDRVSAGSAIFRFH
Ga0318572_101637733	3300031681	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSANFRFHGSLTML
Ga0318572_104891311	3300031681	Soil	MTGTGPLIRPMTPADRSALASFPDRVSAASAIFRFHGS
Ga0310686_1033116621	3300031708	Soil	VTGTGPLIRPMTPADRSALADFPNRVSAGSAIFRFH
Ga0310686_1190302672	3300031708	Soil	MTGAGPLIRPMTPADRSALADFPNRVSAGSAIFRFHGSVTVLTDK
Ga0318496_104590962	3300031713	Soil	MTGPGPLIRPMTPADRPALADFPDRVSAGSANFRFHGSLTMLTDQTLDLLL
Ga0306917_102325173	3300031719	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSANFRFH
Ga0318493_101285573	3300031723	Soil	MTGAGPLIRPMTPADRPALADFPDRVSAGSAIFRFHGSVTMLTDKTLDLLLDLVEGQR
Ga0318493_106093692	3300031723	Soil	MTGTGPLIRPMTPADRPALADFPDRVSAASAIFRFHGSLTM
Ga0318500_100699281	3300031724	Soil	MTGPGPLIRPMTPADRSALANFPDRVSAGSAIFRFHGSLTVLTDKTLD
Ga0318501_102173621	3300031736	Soil	MTGTGPLIRPMTPADRSALADFPDRVSAGSAIFRFHGSLTMLTDKTLDLLLDLVDGQREA
Ga0318492_106908882	3300031748	Soil	MTGTGPLIRPMTPADRPALADFPDRVSAGSANFRFHGSVTMLT
Ga0318494_102183931	3300031751	Soil	MTGTGPLIRPMTPADRSALASFPDRVSAASAIFRFHGSVTMLTDK
Ga0318535_104000823	3300031764	Soil	MTGTGPLIRPMTPADRSALANFPNRVSAGNAIFRFHGSVTVLTDKTLDLLLD
Ga0318554_104418731	3300031765	Soil	MTGTGPLIRPLTPADRSALANFPSRVSAGSANFRFHGSLTML
Ga0318554_106508301	3300031765	Soil	MTGTGPLIRPMTPADRPALTDFPDRVSAGSANFRFHGSVTMLTDKTLDLLLDLA
Ga0318554_107978522	3300031765	Soil	MTGTGPLIRPLTPADRPALADFPDRVSAASAIFRFHGSVAVLTDQTLNLLLDLVDGQRE
Ga0318526_104852541	3300031769	Soil	MTGTGPLIRPMTPADRSALANFPNRVSAGSAIFRFHGSLTMLTDKTLD
Ga0318521_104836932	3300031770	Soil	MTGTGPLIRPMTPADRPALADFPDRVSAGSAIFRFHGSVAVLTDQTLNLLLDLV
Ga0318521_107565971	3300031770	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSANFRFHGSLTMLTDKTLDLLLDLADGQR
Ga0318546_105369243	3300031771	Soil	MTGPGPLIRPMTPADRSALANFPDRVSAGSAIFRFHGSLTVLTDKTLNLLLD
Ga0318498_101913551	3300031778	Soil	MTGTGPLIRPMTPADRPALANFPDRVSAGSAIFRFHGSLTMLTDQTLDLLLDLVDGQREAIT
Ga0318498_103048991	3300031778	Soil	MTGTGPLIRPMTPADRAALADFPDRVSAGSAIFRFH
Ga0318547_108548151	3300031781	Soil	MTGTGPLIRPLTPADRPALADFPDRVSAASAIFRFHGSLTM
Ga0318552_106192461	3300031782	Soil	MTGPGPLIRPMTPADRPALADFPDRVSAGSANFRFHGSLTMLTDQTLDLLLDLVDGQREAIT
Ga0318529_102973322	3300031792	Soil	MTGTGPLIRPMTPSDRSALANFPSRVSAGSANFRFHGSLTMLTD
Ga0318576_105260312	3300031796	Soil	MTGTGPLIRPMTPADRPALADFPDRVSAGSANFRFHGSLTMLTDQTLDLLLDLV
Ga0318550_104620961	3300031797	Soil	MTGTGPLIRPMTPADRPALANFPDRVSAGSAIFRFHGSLTMLTDQT
Ga0318499_104344711	3300031832	Soil	MTGTGPLIRPMTPADRSALADFPDRVSAGSAIFRFHGSLTM
Ga0318495_102895762	3300031860	Soil	MTGTGPLIRPMTPADRSALASFPDRVSAASAIFRFHGSVTMLTDKTLNLL
Ga0318495_103319452	3300031860	Soil	MTGTGPLIRPMTPADRPALANFPDRVSAGSAIFRFHGSLTMLTDQTLDLLLDLVDGQREA
Ga0306919_102755951	3300031879	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSANFRFHGSLTMLTDKTLDLLLDLA
Ga0318536_100664071	3300031893	Soil	MTGTGPLIRPMTPSDRSALANFPSRVSAGSANFRFHGSLTMLTDQTLDLLLDL
Ga0318536_105207101	3300031893	Soil	MTGTGPLIRPMTPADRPALANFPDRVSAGSAIFRFHGSLTMLTDQTLD
Ga0318551_100837641	3300031896	Soil	MTGTGPLIRPMTPADRPALANFPDRVSAGSAIFRFHGS
Ga0318520_100090341	3300031897	Soil	MTGTGPLIRPMTPADRPALANFPDRVSAGSAIFRFHGSLTMLTDQTLDLLL
Ga0306921_120244261	3300031912	Soil	MTGTGPLIRPMTPADRPALTDFPDRVSAASAIFRFHGSVTMLTPKTLDLLLDLAEG
Ga0306922_100497341	3300032001	Soil	MTGTGLLIRPMTPADRSALANFPNRVSAGSAIFRFHGSLTMLTD
Ga0318563_100931402	3300032009	Soil	MTGPGPLIRPMTPADRPALADFPNRVSAGSANFRFHGSLTMLTDQTLDLLLD
Ga0318563_101054361	3300032009	Soil	MTGTGPLIRPMTPADRPALADFPDRVSAGSANFRFHGSVTM
Ga0318563_105834361	3300032009	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSANFRFHGSLTMLTDKTLD
Ga0318563_106582022	3300032009	Soil	MTGTGPLIRPMTSADRSALANFPSRVSARSAIFRFHGSLTVLTD
Ga0318563_107907131	3300032009	Soil	MTGTGPLIRPLTPADRPALADFPDRVSATSANFRFHGSVTMLTDKTLDLLLD
Ga0318569_101634221	3300032010	Soil	MTGPGPLIRPMTPADRSALANFPDRVSAGSAIFRFHGSLTV
Ga0310911_104733271	3300032035	Soil	MTGTGPLIRPMTPADRPALADFPDRVSAGSANFRFHGSVTMLTDKT
Ga0318559_104476941	3300032039	Soil	MTGTSPLIRPMTPADRPALADFPDRVSAGSAIFRFHGSVTMLTDKTLDLLLDLV
Ga0318545_102822121	3300032042	Soil	MTGTGPLIRPMTPADRPALTDFPDRVSAGSANFRFHGSVTMLTDK
Ga0318558_101952623	3300032044	Soil	MTGAGPLIRPMTPADRPALADFPDRVSAGSAIFRFHGSVTMLTDKTLDLLLDLVEGQRE
Ga0318513_103702981	3300032065	Soil	MTGTGPLIRPMTPADRSALADFPDRVSAGSAIFRFHGSLTMLTDK
Ga0318524_106465812	3300032067	Soil	MTGTGPLIRPMTPADRPALTDFPDRVSAGSANFRFHGSVTMLTDKTLDLLLDLAD
Ga0318553_100633922	3300032068	Soil	MTGTGPLIRPMTPSDRSALANFPSRVSAGSANFRFHGSLTMLTDQTLDLLLDLADGQREAIT
Ga0318518_100801282	3300032090	Soil	MAGTRPLIRPMTGADRPALAKFPSRVSAGSANFRFHGSLTMLTD
Ga0306920_1019938471	3300032261	Soil	MTGPGPLIRPMTPADRPALADFPDRVSPGSANFRFHG
Ga0335083_102781301	3300032954	Soil	MTGTGPLIRPLTPADRPALANFPNRVSAGRAIFRFHGSVTTLTDKTLNLL
Ga0335077_106595751	3300033158	Soil	MTGTGPQIRPLTPADRAALASFPDRVSAGSANFRFHGSLTVLKRP
Ga0310914_103041411	3300033289	Soil	MTGTGPLIRPMTPADRPALANFPNRVSAGSANFRFHGSLTMLTDKTLDLLLDLADGQREAIT
Ga0310914_110191441	3300033289	Soil	MTGPGPLIRPMTPADRSALANFPDRVSAGSAIFRFHGS
Ga0318519_101846173	3300033290	Soil	MTGTGPLIRPMTPSDRSALANFPSRVSAGSANFRFH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F073866

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences