Metagenome / Metatranscriptome Family F073899

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073899
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	53 residues
Representative Sequence	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTPEALLRVGLSPTAKVLDLK
Number of Associated Samples	94
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	84.87 %
% of genes near scaffold ends (potentially truncated)	71.67 %
% of genes from short scaffolds (< 2000 bps)	90.00 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.57

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.833 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.500 % of family members)
Environment Ontology (ENVO)	Unclassified (47.500 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.833 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.39% β-sheet: 20.25% Coil/Unstructured: 68.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.57
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.57
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF13414	TPR_11	2.50
PF13683	rve_3	1.67
PF00072	Response_reg	0.83
PF13091	PLDc_2	0.83
PF04392	ABC_sub_bind	0.83
PF13432	TPR_16	0.83
PF08546	ApbA_C	0.83
PF00383	dCMP_cyt_deam_1	0.83
PF09933	DUF2165	0.83
PF13701	DDE_Tnp_1_4	0.83
PF02566	OsmC	0.83
PF00872	Transposase_mut	0.83
PF10011	DUF2254	0.83
PF02417	Chromate_transp	0.83
PF04909	Amidohydro_2	0.83
PF01526	DDE_Tnp_Tn3	0.83
PF13358	DDE_3	0.83
PF10083	DUF2321	0.83
PF01266	DAO	0.83
PF08734	GYD	0.83
PF01527	HTH_Tnp_1	0.83
PF13817	DDE_Tnp_IS66_C	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.83
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.83
COG1893	Ketopantoate reductase	Coenzyme transport and metabolism [H]	0.83
COG2059	Chromate transport protein ChrA	Inorganic ion transport and metabolism [P]	0.83
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.83
COG3328	Transposase (or an inactivated derivative)	Mobilome: prophages, transposons [X]	0.83
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.83
COG4644	Transposase and inactivated derivatives, TnpA family	Mobilome: prophages, transposons [X]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
All Organisms	root	All Organisms	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
cellular organisms	root	All Organisms → cellular organisms	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.17 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	25.00 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	19.17 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.83 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1.67 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.67 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.83 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.83 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	0.83 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.83 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.83 %
Myxococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Myxococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
unclassified Myxococcus	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.83 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.00 %
Myxococcus sp. RHSTA-1-4	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	0.83 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	0.83 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.83 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.83 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001160\|JGI12654J13325_1016764	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300002245\|JGIcombinedJ26739_101663758	Not Available	537	Open in IMG/M
3300003368\|JGI26340J50214_10074025	Not Available	901	Open in IMG/M
3300004080\|Ga0062385_10653806	Not Available	671	Open in IMG/M
3300004082\|Ga0062384_100048586	Not Available	2040	Open in IMG/M
3300004082\|Ga0062384_100802451	All Organisms → cellular organisms → Bacteria → Proteobacteria	658	Open in IMG/M
3300004092\|Ga0062389_100833281	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1103	Open in IMG/M
3300005179\|Ga0066684_10060014	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2215	Open in IMG/M
3300005435\|Ga0070714_100520181	Not Available	1136	Open in IMG/M
3300005467\|Ga0070706_101584832	Not Available	597	Open in IMG/M
3300005468\|Ga0070707_101629976	Not Available	612	Open in IMG/M
3300005536\|Ga0070697_100433660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1143	Open in IMG/M
3300005549\|Ga0070704_101000348	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	756	Open in IMG/M
3300005559\|Ga0066700_10172444	All Organisms → cellular organisms → Bacteria	1480	Open in IMG/M
3300005764\|Ga0066903_102168774	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300006028\|Ga0070717_10843180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	834	Open in IMG/M
3300006173\|Ga0070716_101703279	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300006175\|Ga0070712_101868944	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300009137\|Ga0066709_103075795	All Organisms → cellular organisms → Bacteria → Proteobacteria	611	Open in IMG/M
3300009792\|Ga0126374_11493170	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	554	Open in IMG/M
3300010343\|Ga0074044_10270793	All Organisms → cellular organisms → Bacteria	1119	Open in IMG/M
3300010360\|Ga0126372_13079384	Not Available	517	Open in IMG/M
3300010361\|Ga0126378_10219488	Not Available	1984	Open in IMG/M
3300010361\|Ga0126378_10659398	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1159	Open in IMG/M
3300010361\|Ga0126378_11705179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M
3300010361\|Ga0126378_12141892	Not Available	638	Open in IMG/M
3300010376\|Ga0126381_101499854	Not Available	974	Open in IMG/M
3300010376\|Ga0126381_101756729	Not Available	896	Open in IMG/M
3300010376\|Ga0126381_101939251	Not Available	849	Open in IMG/M
3300010398\|Ga0126383_11294047	All Organisms → cellular organisms → Bacteria	819	Open in IMG/M
3300010398\|Ga0126383_12694877	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	580	Open in IMG/M
3300012198\|Ga0137364_10733814	Not Available	746	Open in IMG/M
3300012361\|Ga0137360_10268419	All Organisms → cellular organisms → Bacteria → Proteobacteria	1407	Open in IMG/M
3300012362\|Ga0137361_10070359	All Organisms → cellular organisms → Bacteria → Proteobacteria	2962	Open in IMG/M
3300012917\|Ga0137395_11169846	Not Available	540	Open in IMG/M
3300012923\|Ga0137359_10981472	Not Available	726	Open in IMG/M
3300016270\|Ga0182036_10956022	Not Available	704	Open in IMG/M
3300016294\|Ga0182041_10007127	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	6151	Open in IMG/M
3300016294\|Ga0182041_11251712	Not Available	678	Open in IMG/M
3300016319\|Ga0182033_10038417	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3133	Open in IMG/M
3300016319\|Ga0182033_10640154	Not Available	927	Open in IMG/M
3300016371\|Ga0182034_10657164	Not Available	888	Open in IMG/M
3300016387\|Ga0182040_10060739	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Myxococcaceae → Myxococcus → unclassified Myxococcus → Myxococcus sp. RHSTA-1-4	2403	Open in IMG/M
3300016387\|Ga0182040_10632717	Not Available	869	Open in IMG/M
3300016422\|Ga0182039_10374027	Not Available	1202	Open in IMG/M
3300016445\|Ga0182038_10096886	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2131	Open in IMG/M
3300020581\|Ga0210399_11366709	Not Available	555	Open in IMG/M
3300020583\|Ga0210401_11570028	Not Available	515	Open in IMG/M
3300021171\|Ga0210405_10469830	Not Available	987	Open in IMG/M
3300021178\|Ga0210408_10443318	Not Available	1034	Open in IMG/M
3300021178\|Ga0210408_10887056	Not Available	695	Open in IMG/M
3300021404\|Ga0210389_11123426	Not Available	607	Open in IMG/M
3300021406\|Ga0210386_11397132	Not Available	587	Open in IMG/M
3300021476\|Ga0187846_10136093	Not Available	1044	Open in IMG/M
3300021478\|Ga0210402_11220498	Not Available	679	Open in IMG/M
3300021478\|Ga0210402_11242426	Not Available	672	Open in IMG/M
3300021479\|Ga0210410_11263624	Not Available	630	Open in IMG/M
3300021559\|Ga0210409_11353259	Not Available	588	Open in IMG/M
3300021559\|Ga0210409_11359282	Not Available	586	Open in IMG/M
3300021560\|Ga0126371_10396172	Not Available	1522	Open in IMG/M
3300021560\|Ga0126371_13562475	Not Available	525	Open in IMG/M
3300022726\|Ga0242654_10300646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300025928\|Ga0207700_11178232	Not Available	684	Open in IMG/M
3300026498\|Ga0257156_1111345	Not Available	569	Open in IMG/M
3300027651\|Ga0209217_1013875	All Organisms → cellular organisms → Bacteria → Proteobacteria	2626	Open in IMG/M
3300027651\|Ga0209217_1036839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	1516	Open in IMG/M
3300027651\|Ga0209217_1085101	Not Available	915	Open in IMG/M
3300027729\|Ga0209248_10047016	Not Available	1328	Open in IMG/M
3300028047\|Ga0209526_10152297	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1619	Open in IMG/M
3300028047\|Ga0209526_10518666	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	774	Open in IMG/M
3300029636\|Ga0222749_10773219	Not Available	525	Open in IMG/M
3300031543\|Ga0318516_10070940	Not Available	1931	Open in IMG/M
3300031545\|Ga0318541_10248071	Not Available	989	Open in IMG/M
3300031545\|Ga0318541_10502889	Not Available	678	Open in IMG/M
3300031546\|Ga0318538_10023278	Not Available	2796	Open in IMG/M
3300031546\|Ga0318538_10451054	Not Available	696	Open in IMG/M
3300031561\|Ga0318528_10044564	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2229	Open in IMG/M
3300031561\|Ga0318528_10584661	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	599	Open in IMG/M
3300031564\|Ga0318573_10477694	Not Available	671	Open in IMG/M
3300031572\|Ga0318515_10492694	Not Available	654	Open in IMG/M
3300031668\|Ga0318542_10551553	Not Available	600	Open in IMG/M
3300031680\|Ga0318574_10183170	Not Available	1199	Open in IMG/M
3300031681\|Ga0318572_10118571	Not Available	1509	Open in IMG/M
3300031736\|Ga0318501_10252754	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	933	Open in IMG/M
3300031736\|Ga0318501_10524775	Not Available	647	Open in IMG/M
3300031747\|Ga0318502_10372302	Not Available	847	Open in IMG/M
3300031751\|Ga0318494_10369092	Not Available	831	Open in IMG/M
3300031768\|Ga0318509_10605093	Not Available	610	Open in IMG/M
3300031770\|Ga0318521_10296911	Not Available	950	Open in IMG/M
3300031771\|Ga0318546_10280585	Not Available	1150	Open in IMG/M
3300031782\|Ga0318552_10194674	Not Available	1025	Open in IMG/M
3300031795\|Ga0318557_10181490	Not Available	958	Open in IMG/M
3300031796\|Ga0318576_10523336	Not Available	559	Open in IMG/M
3300031819\|Ga0318568_10166655	Not Available	1352	Open in IMG/M
3300031832\|Ga0318499_10230159	Not Available	721	Open in IMG/M
3300031859\|Ga0318527_10408682	Not Available	579	Open in IMG/M
3300031879\|Ga0306919_10776436	Not Available	737	Open in IMG/M
3300031880\|Ga0318544_10392637	Not Available	539	Open in IMG/M
3300031893\|Ga0318536_10077423	Not Available	1644	Open in IMG/M
3300031910\|Ga0306923_10612270	Not Available	1221	Open in IMG/M
3300031912\|Ga0306921_11505487	Not Available	735	Open in IMG/M
3300031946\|Ga0310910_10691526	Not Available	806	Open in IMG/M
3300031954\|Ga0306926_11163439	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	908	Open in IMG/M
3300031959\|Ga0318530_10045643	Not Available	1631	Open in IMG/M
3300031981\|Ga0318531_10120748	Not Available	1163	Open in IMG/M
3300032043\|Ga0318556_10171927	Not Available	1122	Open in IMG/M
3300032044\|Ga0318558_10157327	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1096	Open in IMG/M
3300032060\|Ga0318505_10067017	Not Available	1574	Open in IMG/M
3300032060\|Ga0318505_10500283	Not Available	573	Open in IMG/M
3300032066\|Ga0318514_10570208	Not Available	603	Open in IMG/M
3300032066\|Ga0318514_10599406	Not Available	586	Open in IMG/M
3300032090\|Ga0318518_10276019	Not Available	863	Open in IMG/M
3300032090\|Ga0318518_10353773	Not Available	754	Open in IMG/M
3300032091\|Ga0318577_10390659	Not Available	665	Open in IMG/M
3300032091\|Ga0318577_10496399	Not Available	582	Open in IMG/M
3300032205\|Ga0307472_100513052	All Organisms → cellular organisms → Bacteria → Proteobacteria	1037	Open in IMG/M
3300032261\|Ga0306920_100261695	Not Available	2580	Open in IMG/M
3300033289\|Ga0310914_10547313	Not Available	1045	Open in IMG/M
3300033290\|Ga0318519_11011003	Not Available	516	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.00%
Aquatic	Environmental → Aquatic	5.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.17%
Freshwater	Environmental → Aquatic → Freshwater	5.00%
Cave	Environmental → Terrestrial → Cave	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.33%
Loam	Environmental → Terrestrial → Soil → Loam	15.00%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.00%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	60.83%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	15.00%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	8.33%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	6.67%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	5.00%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.50%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	47.50%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.50%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	10.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	7.50%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.83%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.00%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.83%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001160	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003368	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005549	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG	Environmental	Open in IMG/M
3300005559	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300009137	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022726	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-30-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026498	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NI-49-A	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031796	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f24	Environmental	Open in IMG/M
3300031819	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031859	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f25	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300031981	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f25	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032066	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18	Environmental	Open in IMG/M
3300032090	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f22	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12654J13325_10167642	3300001160	Forest Soil	MPPLYLARIEDLERGDLVQVDCAACHHIALLRPDSLLRLGLSPQAKVLDLKGGV*
JGIcombinedJ26739_1016637582	3300002245	Forest Soil	MLPLYATRIEDLGQGDFVKVDCAACHHVALLTPQSLLRAGLSAAAKVL
JGI26340J50214_100740253	3300003368	Bog Forest Soil	MQPLYLARIEDLGRGDLVRVDCAACHHVALLTPEFLLQLGLSTQAKVLDLKW
Ga0062385_106538061	3300004080	Bog Forest Soil	MLPLYLARIEDLGRGDLVKVERRLHHVALLTPEFLRQLGLSPRVKVLDLKTRV*
Ga0062384_1000485862	3300004082	Bog Forest Soil	MLPLYLGADEDLGRGDLLRVDCAACRHVALLTRESLLRLGLSPQAKMLDLNHHLFEPKY*
Ga0062384_1008024512	3300004082	Bog Forest Soil	MLPLYLARIEDLGRGALVKVDCAACHHVVLLTSEFLLRLGLSRRTKVLNL*
Ga0062389_1008332813	3300004092	Bog Forest Soil	MRGTDASLYIPQIAALAWGDFVEVDCAACHHVALPTPGALLRVGLSPAAKVLDLKGRLR*
Ga0066684_100600141	3300005179	Soil	MQPLCLAGIEDLGPGDLVKVDCAACHHVALLRPDFLLRLGLSPAAKVLDL
Ga0070714_1005201813	3300005435	Agricultural Soil	MLPLYAARIEDLGRGDFVKVDCAPCQHVALLTRGLLKVGVSPAAKVLDLKGRFR
Ga0070706_1015848321	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MQPLYLARIEDLGRGDLVQVDCAACRHVALLTPGFLLRLGLSPQAKV
Ga0070707_1016299762	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MQPLYLARIEDLKHGDLVKVDCAACHHVALLMPEFLLRLGLNPQAKVLDLKTRVRCRGCG
Ga0070697_1004336601	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGLGDFVKVDCAACRHVALLAPDFLVRLGLSPQAKVLDLKGR
Ga0070697_1012730611	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYSARVEDLGQGDFVKVDCAACHHVALVTPEALLRAGLSPAAELL
Ga0070704_1010003482	3300005549	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGQGDFVKVDCAACHHVAVLAPDFLLRLGLSPQTKVLDLKERVRC
Ga0066700_101724443	3300005559	Soil	MQSLYLARIEGLGRGDLVQVDCTVCHHVALLTPDFLLRLGLSRLGQNDV*
Ga0066903_1021687741	3300005764	Tropical Forest Soil	LYAARIEDLGRGDLLKVDCAGCHHVALLRVGLGLVVKVLDLKMRFRCRGCGARRSLKSSFLALKRRWPW*
Ga0070717_108431801	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPEFLLRIGLRPGTKVLDLK
Ga0070716_1017032792	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGQGDFATVDCAACHPVALLTPEFLLRLGLSPQAKVLDLKER
Ga0070712_1018689441	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGQGDFVKVDCAACRHVALLSPDFLLRLGLSPQAKVLDLKERVRCR
Ga0066709_1030757951	3300009137	Grasslands Soil	MQPLYLARIEDLGRGDLVQVDCGACHHVALLTPDFLLRLGLSPRAEVLDLKGRARCCGCG
Ga0126374_114931701	3300009792	Tropical Forest Soil	MTGMQPVYLARIEDLRVAIVKVDRAACHHVAVLTPEFLLQLGLSPRANAL
Ga0074044_102707932	3300010343	Bog Forest Soil	MLPLYLARIEDLGRGDLVKADCAACHHVGLLTPEFVLRLGLSP*
Ga0126372_130793842	3300010360	Tropical Forest Soil	MVPVYLARIEDLRQGEFVKVDCVGCCHVALLTRAVLLKLGLSPAASVLDKAMPV*
Ga0126378_102194882	3300010361	Tropical Forest Soil	MVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMPV*
Ga0126378_106593983	3300010361	Tropical Forest Soil	MLPLYAARIADLGRGDFVKVDCTACHHVALLTPAALERLGLSLATKVLDLKVRL
Ga0126378_117051791	3300010361	Tropical Forest Soil	MLPLYAARIADLGPGDFVKVDCAACQHVALLPPEALLRAGLSPYWSLFPDRY*
Ga0126378_121418921	3300010361	Tropical Forest Soil	MLPLYAARIEDLGRGDLVKVDCADCRHVALLTQEALLRVGLSPAAKVLDLKGRL
Ga0126381_1014998542	3300010376	Tropical Forest Soil	MQPLYLARIEDLGRGDFVKIDCAACHHVALLTPEALLKLGLSPWSRSSI*
Ga0126381_1017567292	3300010376	Tropical Forest Soil	LLPLYAARIEDLGRGDLVKVDCAACRHVALLTPEVLVRAGLSPVTKVLDLK*
Ga0126381_1019392511	3300010376	Tropical Forest Soil	LRSRVLPLYVARIAGLGRGDLVKADCAACHHVALLTSAALLTLGLSPRPKCST*
Ga0126383_112940471	3300010398	Tropical Forest Soil	MQPLYLVRIEDLGRGDLVQVDCAACYHVALLTPDFLLRFGLSPQVKVLD
Ga0126383_126948771	3300010398	Tropical Forest Soil	MQPLHLARIEDLGRGDLVKVDCAACHNVALLTPDFLVWLGVSPQAKVPGPQRRVRCRGF
Ga0137364_107338141	3300012198	Vadose Zone Soil	ASMLPLYAARIEDLGPGEFVKVDCAACHHVALLTPDALLRVGLSPAAKVLDLKGRFRCR*
Ga0137360_102684193	3300012361	Vadose Zone Soil	MLPLYLARFKDLGRGDLVQVDCAACHHVALLTPDFLLRLGLSPEVVL*
Ga0137361_100703592	3300012362	Vadose Zone Soil	MVMVPLYLARIEDLGRGDLVQVDCAAYHPVALVTPEFLLRLGLSRQAKVLDLKSRVRCRGAERGDGPSSQ*
Ga0137395_111698462	3300012917	Vadose Zone Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPEALMKAGLSAAAKVLDLKGRLRCRGCG
Ga0137359_109814721	3300012923	Vadose Zone Soil	MVMVPLYLARIEDLGRGDLVQVDCAAYHPVALVTPEFLLRLGLSRQAKVLDLKSRVRCRGCGAR*
Ga0182036_109560221	3300016270	Soil	MLPLYLARIEDLRRGDLVKVDCAACHHVALLTSDFLLGLGFSPSAKVLDLKWRVRCRGCG
Ga0182041_100071271	3300016294	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHPLFEPKY
Ga0182041_112517121	3300016294	Soil	LLPLYLARIEDLGRGDLVQVDCAACHHVALLTPEFMRLLGLSARAK
Ga0182033_100384178	3300016319	Soil	MLPLYLARIKDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDA
Ga0182033_106401541	3300016319	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDLKERVRCRGRR
Ga0182034_106571642	3300016371	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVL
Ga0182040_100607392	3300016387	Soil	VYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMPV
Ga0182040_106327172	3300016387	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDLKERVRC
Ga0182039_103740273	3300016422	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKMLDLNHHLFE
Ga0182038_100968861	3300016445	Soil	MLPLYLARIEDLRQGEFVKIDCASCHHVAVLSREFLLRLGLSPDAKVLDLKWR
Ga0210399_113667091	3300020581	Soil	MLPLYLARIEDLGQSDFVKVDCAACHHVALLTPVFLLKLGLSPQPNVLALNMRVRCRGCGARR
Ga0210401_115700281	3300020583	Soil	MLPLYAARIEDLGVGDFVKIDCAACHHVALLTPEALRKAGLSPAAKVLDLKGRLRC
Ga0210405_104698301	3300021171	Soil	MLPLYAARIEDLGQGDFVKVDCAGCDHIALLTPEALLRAGLRPTAKVRDLKGRL
Ga0210408_104433181	3300021178	Soil	MLPLYSARIEDLGSGDFVKVDCAACHHVALLTPEALLRAGLNPTAKILDLKARLRCRG
Ga0210408_108870562	3300021178	Soil	MLPLYAARIEDLRQGDVVTVDCAACHHVARLTPEALLRAGLQPRGEGSPPQGA
Ga0210389_111234261	3300021404	Soil	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTPEALLRVGLSPTAKVLDLKGR
Ga0210386_113971321	3300021406	Soil	MLPLYAARIEDLGVGDFVKADCAACHHVAPLTPEILLSVGLSPGAKVLDIRGG
Ga0187846_101360931	3300021476	Biofilm	MLPLYLARIGDLRQGEFVKIDCASCHHVGVLTREFLLRLGLSPDAKVL
Ga0210402_112204981	3300021478	Soil	MRPLYAARIEDLGPGEFVKVDCAACHHVALLTPEALLNPAAKVLDLKG
Ga0210402_112424262	3300021478	Soil	LARIKDLGRGDLVKVDCAACHHVALLTPEFLLRLGLYPEAKVLDLKDRVRVPRLRSEGTS
Ga0210410_112636241	3300021479	Soil	MLPLYGAWIEDLGQSDFARVDCGACHNVALPAPEFLLRLGLSPQTEVL
Ga0210409_113532591	3300021559	Soil	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTPEALLRVGLSPTAKVLDLK
Ga0210409_113592822	3300021559	Soil	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTSEALLGAGLRPSAKA
Ga0126371_103961721	3300021560	Tropical Forest Soil	LLPLYAARIEDLGRGDLVKVDCAACRHVALLTPEVLVRAGLSPVTKVLDLK
Ga0126371_135624751	3300021560	Tropical Forest Soil	MVLLYLARIEDLGLGDLVKVDCAAYSHTALLSTTFLLRLGIGPRDKVLDLK
Ga0242654_103006462	3300022726	Soil	MLPLCAARIEDLGQGDFVKVDCAACLHVALLAPHFLLRLGLSPHTKVLDVKQRVR
Ga0207700_111782321	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	MLPLYAARIEDLGPGDFVKVDCAACHHVALLTPDFLLGLGLSPQTKVLDLKER
Ga0257156_11113451	3300026498	Soil	MLPLYAARIEDLGLGDFVKVDCAACYHVALLTPELLLRLGLSPQTKVLDLKERV
Ga0209217_10138751	3300027651	Forest Soil	MPPLYLARIEDLERGDLVQVDCAACHHIALLRPDSLLRLGLSPQAKVLDLKGRV
Ga0209217_10368392	3300027651	Forest Soil	MQLLYLARIDDLGRGDLVQVDCAACRRVALLTPDFLLRF
Ga0209217_10851012	3300027651	Forest Soil	MQPLYLARIEDVERGDRVQVDCAACHHIALLRPDYLLRLGLSSQAKVLELKGRV
Ga0209248_100470164	3300027729	Bog Forest Soil	MQPLYLARIEDLRCGDLLRVDCATCHHVALLTPELLLRLGLSPQ
Ga0209526_101522971	3300028047	Forest Soil	MLPLCAARIEDLGQGDFVKVDCAACRHVALLSPDFLLRLGLSPQGQGARPQRA
Ga0209526_105186661	3300028047	Forest Soil	MLPLYAARIEDLGQSDFVKVDCAACHHVALLAPEFLLRLGLSLQGKVVDPAYN
Ga0222749_107732191	3300029636	Soil	LPLYTTRIEDLGQGDFVKVDCAACHHVALLTPEALLRAGLRPAAKVLDLKGRLRCRGCG
Ga0318516_100709403	3300031543	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKMLDLNHHLFEPKY
Ga0318541_102480711	3300031545	Soil	MVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMPV
Ga0318541_105028892	3300031545	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLEWRVRCRGCG
Ga0318538_100232785	3300031546	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHHLFEPKY
Ga0318538_104510542	3300031546	Soil	MLPLYLARIEDLRRGDLVKVDCAACHHVALLTSDFLLGLGFSPSAKVLDLKWRVRC
Ga0318528_100445641	3300031561	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAEVLDLKWRARCRGCG
Ga0318528_105846612	3300031561	Soil	MQPLYLARIEDLGHGDLVKVDCAACHRVALLTPEFPLRLGLNPRTQVLDLK
Ga0318573_104776941	3300031564	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDLKERVRCRGRRAETER
Ga0318515_104926942	3300031572	Soil	MQPLYLARIGDLGHGDLVKVDCAACHHVAQLTPEFLLRLRISPQAKLLDLK
Ga0318542_105515532	3300031668	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAK
Ga0318574_101831701	3300031680	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKWR
Ga0318572_101185711	3300031681	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHHLFEP
Ga0318501_102527541	3300031736	Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTSEALLRVGLSRAAKVLDLKGRFRC
Ga0318501_105247751	3300031736	Soil	MQPLYLARIEDLGHGDLVKVDCAACHHVAQLTPEFLLRLRISPQAKLLDLK
Ga0318502_103723023	3300031747	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLG
Ga0318494_103690921	3300031751	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAEVL
Ga0318509_106050931	3300031768	Soil	MVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDK
Ga0318521_102969111	3300031770	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAK
Ga0318546_102805852	3300031771	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKWRAR
Ga0318552_101946741	3300031782	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLEW
Ga0318557_101814903	3300031795	Soil	IPGTQTGMLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKMLDLNHHLFEPKY
Ga0318576_105233362	3300031796	Soil	LARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLEWRVR
Ga0318568_101666551	3300031819	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLN
Ga0318499_102301591	3300031832	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHHLF
Ga0318527_104086821	3300031859	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLD
Ga0306919_107764363	3300031879	Soil	RSADEIGMVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMP
Ga0318544_103926371	3300031880	Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPKAVLRVGLSPAVKVLDLR
Ga0318536_100774231	3300031893	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKWRFRCRGCG
Ga0306923_106122701	3300031910	Soil	STWARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAKVLDLNHHLFEPKY
Ga0306921_115054871	3300031912	Soil	TQTGMQPLYLARIGDLGHGDLVKVDCAACHHVAQLTPEFLLRLRISPQAKLLDLK
Ga0310910_106915261	3300031946	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLE
Ga0306926_111634392	3300031954	Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPAALERVGLSLATKVLDLNGRL
Ga0318530_100456431	3300031959	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKVLDLNHHLFEPKY
Ga0318531_101207481	3300031981	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKW
Ga0318556_101719271	3300032043	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDLKERVRCRGRRAE
Ga0318558_101573272	3300032044	Soil	ADEIGMVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLLKLGLSPAASVLDKAMPV
Ga0318505_100670175	3300032060	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTRESLLRLGLSPQAK
Ga0318505_105002831	3300032060	Soil	MVPVYLARIEDLRQGEFVKVDCAGCCHVALLTRAVLPKLGLSPAASVLDKAMPV
Ga0318514_105702081	3300032066	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDL
Ga0318514_105994061	3300032066	Soil	MLPLYAARIEDLGQGDFVKVDCAACHHVALLTPEALLRVGLSRAAKVLDLKGRFRCRGCG
Ga0318518_102760192	3300032090	Soil	LLPLYLARIEDLGRGDLVKVDCAACHDVALLTPEFMRLLGLSARAKVLDLE
Ga0318518_103537731	3300032090	Soil	MQALYLTRIEDLGFGDLVRVDCAACHHLALLTPDFLLRLGLCRQAKVLDL
Ga0318577_103906591	3300032091	Soil	QTGMQPLYLARIGDLGHGDLVKVDCAACHHVAQLTPEFLLRLRISPQAKLLDLK
Ga0318577_104963991	3300032091	Soil	LLPLYLARIEDLGRGDLVKVDCAACHHVALLTPEFMRLLGLSARAKVLDLEWR
Ga0307472_1005130521	3300032205	Hardwood Forest Soil	MQPLYLARIEDLGRGDVVQVDCAACHHVALLTPEFLLRLGLSP
Ga0306920_1002616952	3300032261	Soil	MVPQYLARIEDLDCDDFVKVDCATCHHVALLTRGALLKLGLSPATKVLDLNMRVRCRGCG
Ga0310914_105473132	3300033289	Soil	MLPLYLARIGDLRQGEFVKIDCASCHHVAVLTREFLLRLGLSPDAKVLDLKWRARCRGCG
Ga0318519_110110031	3300033290	Soil	MLPLYLARIEDLGRGDLLRVDCAACHHVALLTPESLLRLGLSPQAKMLD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073899

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences