Metagenome / Metatranscriptome Family F073976

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

Select file to download:
Download

Overview

Basic Information
Family ID	F073976
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	38 residues
Representative Sequence	MPTGYVLGDIATKAAYFSVAAAAFIFVAMTLLPGLHP
Number of Associated Samples	90
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	89.17 %
% of genes near scaffold ends (potentially truncated)	12.50 %
% of genes from short scaffolds (< 2000 bps)	91.67 %
Associated GOLD sequencing projects	87
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.53

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


Click on a Sequence Logo column to get its information.
Powered by Skylign

Most Common Taxonomy
Group	Unclassified (57.500 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (26.667 % of family members)
Environment Ontology (ENVO)	Unclassified (28.333 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (65.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

Powered by MSAViewer

Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

Powered by MSAViewer

AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

Powered by MSAViewer

Select alignment to view:

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 50.77% β-sheet: 0.00% Coil/Unstructured: 49.23%
Feature Viewer

Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.53
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.53
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00166	Cpn10	4.17
PF08281	Sigma70_r4_2	3.33
PF13545	HTH_Crp_2	2.50
PF03979	Sigma70_r1_1	2.50
PF00118	Cpn60_TCP1	1.67
PF08241	Methyltransf_11	0.83
PF00027	cNMP_binding	0.83
PF00011	HSP20	0.83
PF04998	RNA_pol_Rpb1_5	0.83
PF00589	Phage_integrase	0.83

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0234	Co-chaperonin GroES (HSP10)	Posttranslational modification, protein turnover, chaperones [O]	4.17
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	2.50
COG0459	Chaperonin GroEL (HSP60 family)	Posttranslational modification, protein turnover, chaperones [O]	1.67
COG0071	Small heat shock protein IbpA, HSP20 family	Posttranslational modification, protein turnover, chaperones [O]	0.83
COG0086	DNA-directed RNA polymerase, beta' subunit/160 kD subunit	Transcription [K]	0.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
All Organisms	root	All Organisms	42.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
cellular organisms	root	All Organisms → cellular organisms	42.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	42.50 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.50 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	26.67 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.50 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	8.33 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.50 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.83 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	0.83 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.67 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.83 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.83 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.83 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.83 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.83 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	57.50 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.50 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.83 %
Bradyrhizobium icense	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	0.83 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	0.83 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.83 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %

Visualization

Powered by ApexCharts

Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000559\|F14TC_106055072	Not Available	517	Open in IMG/M
3300000956\|JGI10216J12902_107162720	Not Available	1323	Open in IMG/M
3300001081\|JGI12662J13196_1000240	All Organisms → cellular organisms → Bacteria	2622	Open in IMG/M
3300001081\|JGI12662J13196_1016555	Not Available	609	Open in IMG/M
3300001081\|JGI12662J13196_1020111	Not Available	553	Open in IMG/M
3300001545\|JGI12630J15595_10003887	All Organisms → cellular organisms → Bacteria	3239	Open in IMG/M
3300001545\|JGI12630J15595_10008567	Not Available	2209	Open in IMG/M
3300001545\|JGI12630J15595_10032199	Not Available	1080	Open in IMG/M
3300001545\|JGI12630J15595_10059639	Not Available	757	Open in IMG/M
3300001545\|JGI12630J15595_10084606	Not Available	623	Open in IMG/M
3300001661\|JGI12053J15887_10228587	All Organisms → cellular organisms → Bacteria	933	Open in IMG/M
3300001661\|JGI12053J15887_10279284	All Organisms → cellular organisms → Bacteria	822	Open in IMG/M
3300001661\|JGI12053J15887_10431819	Not Available	631	Open in IMG/M
3300002245\|JGIcombinedJ26739_100240169	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1701	Open in IMG/M
3300002245\|JGIcombinedJ26739_100271707	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300002245\|JGIcombinedJ26739_101102822	Not Available	681	Open in IMG/M
3300002245\|JGIcombinedJ26739_101310029	Not Available	616	Open in IMG/M
3300003505\|JGIcombinedJ51221_10131860	All Organisms → cellular organisms → Bacteria	1005	Open in IMG/M
3300003505\|JGIcombinedJ51221_10476730	Not Available	503	Open in IMG/M
3300004152\|Ga0062386_100868194	Not Available	745	Open in IMG/M
3300004152\|Ga0062386_101715967	Not Available	524	Open in IMG/M
3300005105\|Ga0066812_1018553	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300005435\|Ga0070714_100451050	All Organisms → cellular organisms → Bacteria	1222	Open in IMG/M
3300005437\|Ga0070710_10075682	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium icense	1951	Open in IMG/M
3300005437\|Ga0070710_10366426	Not Available	958	Open in IMG/M
3300005439\|Ga0070711_100750582	Not Available	825	Open in IMG/M
3300005602\|Ga0070762_11079394	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300006041\|Ga0075023_100035973	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1485	Open in IMG/M
3300006172\|Ga0075018_10190453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	968	Open in IMG/M
3300006175\|Ga0070712_100061672	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2649	Open in IMG/M
3300006175\|Ga0070712_100442607	Not Available	1081	Open in IMG/M
3300006175\|Ga0070712_101468681	Not Available	595	Open in IMG/M
3300006797\|Ga0066659_11334651	Not Available	598	Open in IMG/M
3300006844\|Ga0075428_101789371	Not Available	640	Open in IMG/M
3300009038\|Ga0099829_11041171	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	679	Open in IMG/M
3300009038\|Ga0099829_11071861	Not Available	668	Open in IMG/M
3300009088\|Ga0099830_10837029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	760	Open in IMG/M
3300009089\|Ga0099828_10589540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1001	Open in IMG/M
3300009143\|Ga0099792_10711693	Not Available	651	Open in IMG/M
3300009789\|Ga0126307_10155241	All Organisms → cellular organisms → Bacteria → Proteobacteria	1833	Open in IMG/M
3300009840\|Ga0126313_10647391	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	853	Open in IMG/M
3300010036\|Ga0126305_10384519	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	923	Open in IMG/M
3300010038\|Ga0126315_10290318	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1007	Open in IMG/M
3300010038\|Ga0126315_10455046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	811	Open in IMG/M
3300010041\|Ga0126312_10148654	All Organisms → cellular organisms → Bacteria	1625	Open in IMG/M
3300010041\|Ga0126312_10589142	Not Available	799	Open in IMG/M
3300010339\|Ga0074046_10151598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1478	Open in IMG/M
3300010375\|Ga0105239_10817473	Not Available	1068	Open in IMG/M
3300010861\|Ga0126349_1088949	Not Available	545	Open in IMG/M
3300011003\|Ga0138514_100089444	Not Available	660	Open in IMG/M
3300011269\|Ga0137392_11058849	Not Available	666	Open in IMG/M
3300011270\|Ga0137391_10361275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1246	Open in IMG/M
3300011270\|Ga0137391_11335992	Not Available	563	Open in IMG/M
3300012021\|Ga0120192_10004288	Not Available	1908	Open in IMG/M
3300012189\|Ga0137388_10388511	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1291	Open in IMG/M
3300012189\|Ga0137388_11329293	Not Available	658	Open in IMG/M
3300012198\|Ga0137364_11405321	Not Available	517	Open in IMG/M
3300012224\|Ga0134028_1190831	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	529	Open in IMG/M
3300012356\|Ga0137371_10544153	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	894	Open in IMG/M
3300012363\|Ga0137390_11025132	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300012683\|Ga0137398_11041855	Not Available	566	Open in IMG/M
3300012917\|Ga0137395_11243987	Not Available	518	Open in IMG/M
3300012955\|Ga0164298_11140149	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	587	Open in IMG/M
3300012961\|Ga0164302_10504917	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	854	Open in IMG/M
3300012961\|Ga0164302_10743998	Not Available	732	Open in IMG/M
3300012985\|Ga0164308_11223486	Not Available	679	Open in IMG/M
3300012987\|Ga0164307_11031259	Not Available	671	Open in IMG/M
3300012988\|Ga0164306_10830935	Not Available	747	Open in IMG/M
3300012989\|Ga0164305_10505184	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300012989\|Ga0164305_11336837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	628	Open in IMG/M
3300018071\|Ga0184618_10354703	Not Available	625	Open in IMG/M
3300018072\|Ga0184635_10120779	Not Available	1041	Open in IMG/M
3300018468\|Ga0066662_11664857	Not Available	667	Open in IMG/M
3300019789\|Ga0137408_1403376	All Organisms → cellular organisms → Bacteria	5094	Open in IMG/M
3300019887\|Ga0193729_1027354	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2430	Open in IMG/M
3300019890\|Ga0193728_1227286	All Organisms → cellular organisms → Bacteria	764	Open in IMG/M
3300020579\|Ga0210407_10649120	All Organisms → cellular organisms → Bacteria	820	Open in IMG/M
3300020579\|Ga0210407_11333286	Not Available	535	Open in IMG/M
3300020580\|Ga0210403_10393531	All Organisms → cellular organisms → Bacteria	1132	Open in IMG/M
3300020581\|Ga0210399_10201244	Not Available	1656	Open in IMG/M
3300020581\|Ga0210399_11036406	Not Available	659	Open in IMG/M
3300020581\|Ga0210399_11439815	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	537	Open in IMG/M
3300020583\|Ga0210401_10526450	All Organisms → cellular organisms → Bacteria	1045	Open in IMG/M
3300021168\|Ga0210406_10124247	Not Available	2179	Open in IMG/M
3300021168\|Ga0210406_10788255	Not Available	724	Open in IMG/M
3300021178\|Ga0210408_10041785	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3598	Open in IMG/M
3300021178\|Ga0210408_10436642	Not Available	1042	Open in IMG/M
3300021403\|Ga0210397_11329794	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	558	Open in IMG/M
3300021406\|Ga0210386_10900188	Not Available	758	Open in IMG/M
3300021478\|Ga0210402_11309254	Not Available	652	Open in IMG/M
3300021479\|Ga0210410_11415094	Not Available	588	Open in IMG/M
3300021559\|Ga0210409_11683778	Not Available	511	Open in IMG/M
3300026319\|Ga0209647_1051258	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2219	Open in IMG/M
3300026555\|Ga0179593_1185823	Not Available	1958	Open in IMG/M
3300026557\|Ga0179587_10877196	Not Available	592	Open in IMG/M
3300026984\|Ga0208732_1003287	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1215	Open in IMG/M
3300027105\|Ga0207944_1017505	Not Available	625	Open in IMG/M
3300027161\|Ga0208368_110103	Not Available	537	Open in IMG/M
3300027537\|Ga0209419_1030438	Not Available	1015	Open in IMG/M
3300027565\|Ga0209219_1080952	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	805	Open in IMG/M
3300027587\|Ga0209220_1146394	Not Available	612	Open in IMG/M
3300027603\|Ga0209331_1015498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	1976	Open in IMG/M
3300027610\|Ga0209528_1001493	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	4644	Open in IMG/M
3300027610\|Ga0209528_1079872	Not Available	724	Open in IMG/M
3300027651\|Ga0209217_1127900	Not Available	713	Open in IMG/M
3300027660\|Ga0209736_1143877	All Organisms → cellular organisms → Bacteria	635	Open in IMG/M
3300027663\|Ga0208990_1088216	Not Available	875	Open in IMG/M
3300027674\|Ga0209118_1108586	Not Available	780	Open in IMG/M
3300027681\|Ga0208991_1072029	Not Available	1040	Open in IMG/M
3300027727\|Ga0209328_10185918	Not Available	628	Open in IMG/M
3300027824\|Ga0209040_10132302	All Organisms → cellular organisms → Bacteria	1369	Open in IMG/M
3300027903\|Ga0209488_10665548	Not Available	749	Open in IMG/M
3300027903\|Ga0209488_10847551	Not Available	644	Open in IMG/M
3300027915\|Ga0209069_10718003	Not Available	589	Open in IMG/M
3300028828\|Ga0307312_11134437	Not Available	517	Open in IMG/M
3300030969\|Ga0075394_10361876	Not Available	703	Open in IMG/M
3300031057\|Ga0170834_112528694	Not Available	761	Open in IMG/M
3300031446\|Ga0170820_14440513	Not Available	796	Open in IMG/M
3300031469\|Ga0170819_13237498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	504	Open in IMG/M
3300034113\|Ga0364937_061517	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	716	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.33%
Host-Associated	Host-Associated	1.67%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	91.67%
Aquatic	Environmental → Aquatic	6.67%
Plants	Host-Associated → Plants	1.67%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	90.00%
Sediment	Environmental → Aquatic → Sediment	4.17%
Freshwater	Environmental → Aquatic → Freshwater	2.50%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.67%
Floodplain	Environmental → Terrestrial → Floodplain	0.83%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.00%
Loam	Environmental → Terrestrial → Soil → Loam	34.17%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	4.17%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.67%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	35.00%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	27.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	16.67%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	4.17%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.33%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	2.50%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.67%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	0.83%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.83%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	26.67%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.17%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.00%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.50%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	2.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.50%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.67%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.83%
Terrestrial	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial	0.83%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	0.83%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	0.83%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.83%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Boreal Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil	0.83%

Visualization

Powered by ApexCharts

Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300001081	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3	Environmental	Open in IMG/M
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005105	Soil and rhizosphere microbial communities from Laval, Canada - mgHPC	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005437	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010861	Boreal forest soil eukaryotic communities from Alaska, USA - C4-5 Metatranscriptome (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300011003	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t9i015	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012021	Terrestrial microbial communites from a soil warming plot in Okalahoma, USA - T1	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012224	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_R_Glu_20cm_2_4_2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012356	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012985	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_246_MG	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012988	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_242_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300018071	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_b1	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300019887	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c2	Environmental	Open in IMG/M
3300019890	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1c1	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300026319	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes)	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026984	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF048 (SPAdes)	Environmental	Open in IMG/M
3300027105	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF018 (SPAdes)	Environmental	Open in IMG/M
3300027161	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF032 (SPAdes)	Environmental	Open in IMG/M
3300027537	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM1H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027603	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027610	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M3 (SPAdes)	Environmental	Open in IMG/M
3300027651	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027660	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027663	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027681	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA OM3_M2 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027915	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013 (SPAdes)	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300030969	Forest soil microbial communities from France for metatranscriptomics studies - Site 11 - Champenoux / Amance forest - FA12 Emin (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031469	Fir Spring Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300034113	Sediment microbial communities from East River floodplain, Colorado, United States - 7_s17	Environmental	Open in IMG/M

Geographical Distribution

Zoom:	Powered by OpenStreetMap

Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
F14TC_1060550722	3300000559	Soil	MATGYVLSNAATKAAVCLTAAAFIFVAMLLLTGLHP*
JGI10216J12902_1071627203	3300000956	Soil	MRRSYVLSDVAAKAAYFSLAAAAVIFILMLTLTGLHP*
JGI12662J13196_10002409	3300001081	Forest Soil	MTMXTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP*
JGI12662J13196_10165551	3300001081	Forest Soil	MTMPTGYVLGDIATKAAYFSVAAAAFIFVTMTLLPGLHPYSASRS*
JGI12662J13196_10201112	3300001081	Forest Soil	MTMPTGYVLGDIVAKSTYFSLAAAAFIFVAMTLLPGLHF*
JGI12630J15595_100038873	3300001545	Forest Soil	MTMLTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP*
JGI12630J15595_100085674	3300001545	Forest Soil	MTMPTGYVLGDIVTKSAYFSLAAAAFIFVAMTLLPGLHF*
JGI12630J15595_100321991	3300001545	Forest Soil	MPTGYVLGDIATKAAYFSVAAAAFIFVTMTLLPGLHP*
JGI12630J15595_100596392	3300001545	Forest Soil	MPTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP*
JGI12630J15595_100846061	3300001545	Forest Soil	MTMPTSYVLGELVTKAAYFSLAAAAFIFVTMTLLPGLHP*
JGI12053J15887_102285872	3300001661	Forest Soil	MPTGYVLGELVTKAAYFSLAAAAFIFITMTLLPGLHP*
JGI12053J15887_102792842	3300001661	Forest Soil	MPTGYVLGDIATKAAYFSVAAAAFIFVAMTLLPGLHP*
JGI12053J15887_104318192	3300001661	Forest Soil	MPTGYVLADMATKAAYFSVAVAAFIFVAMTLLPGLHP*
JGIcombinedJ26739_1002401692	3300002245	Forest Soil	MPTGYVLGDLATKAAYFSLAAAAFIFVAMTLLPGLHP*
JGIcombinedJ26739_1002717073	3300002245	Forest Soil	MPTGYVLGDMATKAAYFPVAAAAFIFVAMTLLPGLHP*
JGIcombinedJ26739_1011028221	3300002245	Forest Soil	MPTSYVLGELVTKAAYFSLAAAAFIFVTMTLLPGLHP*
JGIcombinedJ26739_1013100292	3300002245	Forest Soil	MTMPTGYVLGDMATKAAYFSVAVAAFIFVAMTLLPGLHL*
JGIcombinedJ51221_101318601	3300003505	Forest Soil	MAMPTGYVLGDLATKAAYFSLAAAAFIFVAMTLLPGLHP*
JGIcombinedJ51221_104767301	3300003505	Forest Soil	MTMPTGYVLGDIVTKSAYYSLAAAAFIFVAMTLLPGLHF*
Ga0062386_1008681942	3300004152	Bog Forest Soil	MTMPTGYVLGDMASKAAYFSMAVAAFIFVTMTLFTGLHP*
Ga0062386_1017159672	3300004152	Bog Forest Soil	MTMPTGYVLGDMATKAAYFSLAAAAFIFVAMTLLPGLHP*
Ga0066812_10185532	3300005105	Soil	RMTMPTGYVLGDMATKAAYFFVAAAAFIFVAMTLLPGLHP*
Ga0070714_1004510503	3300005435	Agricultural Soil	MTMPTGYVLGDMVTKAAYFSLAAAAFIFVAMTLLPGLHP*
Ga0070710_100756822	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTMPRGYVLGDMATKAAYFSVAAAAFIFVAMTLLPGLHP*
Ga0070710_103664261	3300005437	Corn, Switchgrass And Miscanthus Rhizosphere	MTMPTGYVLGELVTKAAYFSLAAAAFIFVTMTLLPGLHP*
Ga0070711_1007505822	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTMPRGYVLGDMATKAAYYSVAAAAFIFVAMTLLPGLHP*
Ga0070762_110793941	3300005602	Soil	MPRGYVLGDMAAKATYFSVAAAAFIFVAMTLLPGLH
Ga0075023_1000359733	3300006041	Watersheds	MPTGYVLGDMATKAAYFSVAVAAFIFVAMTLLPGLHP*
Ga0075018_101904533	3300006172	Watersheds	MGYVLGDIATKAAYFSVAMAAFIFVTMTLLTGLHP*
Ga0070712_1000616724	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPRGYVLGDMATKAAYYSVAAAAFIFVAMTLLPGLHP*
Ga0070712_1004426072	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MPTGYVLGDMVTKAAYFSLAAAAFIFVAMTLLPGLHP*
Ga0070712_1014686812	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MGYALGDIATKAAYFSVAMAAFIFVAMTLLTGLHP*
Ga0066659_113346511	3300006797	Soil	MGYALGDIATKAAYFSVAMAAFIFVTMTLLTGLHP*
Ga0075428_1017893711	3300006844	Populus Rhizosphere	MGYALGDIPTKAAYFSVAMAAFIFVTMTLLTGLHP*
Ga0099829_110411711	3300009038	Vadose Zone Soil	MTMPTGYVLGDIATKAAYFSVAAAAFIFVAMTLLPGLHP*
Ga0099829_110718611	3300009038	Vadose Zone Soil	MPTGYVLGDLAAKAAYFSLAAAAFIFVAMTLLPGLHP*
Ga0099830_108370293	3300009088	Vadose Zone Soil	MTMLTGYVLGDIATKAAYFSVAAAAFIFVAMTLLPGLHP*
Ga0099828_105895403	3300009089	Vadose Zone Soil	MTMPTGYVLGDIATKAAYFSVAAAAFIFVTMTLLPGLHP*
Ga0099792_107116932	3300009143	Vadose Zone Soil	MPTGYVLGDLAAKAAYFSVAAAAFIFVAMTLLPGLHP*
Ga0126307_101552413	3300009789	Serpentine Soil	MATGYAVSDVATKAAYFSLAAAAFVFVAMLLLTTLHP*
Ga0126313_106473911	3300009840	Serpentine Soil	VMATGYAVSDVATKAAYFSLAAAAFVFVAMLLLTTLHP*
Ga0126305_103845193	3300010036	Serpentine Soil	MATGYAVSDVATKAAYFSLATAAFVFVAMLLLTTLHP*
Ga0126315_102903183	3300010038	Serpentine Soil	MTTGYAVSDVATKAAYFSLAAAAFVFVAMLLLTALHP*
Ga0126315_104550461	3300010038	Serpentine Soil	MLCGRLVMATGYAVSDVATKAAYFSLAAAAFVFVAMLLLTALHP*
Ga0126312_101486542	3300010041	Serpentine Soil	MATGYAVSDVATKAAYFSLAAAAFVFVAMLLLTALHP*
Ga0126312_105891422	3300010041	Serpentine Soil	MATGYSVSDVATKAAYFSLAAAAFVFVAMLLLTSLHP*
Ga0074046_101515983	3300010339	Bog Forest Soil	MTMGYVLGDITSKTAYFSVAAAAFIFVTMTLLPGLYP*
Ga0105239_108174733	3300010375	Corn Rhizosphere	MGYALGDIATKAACFSVAMAAFIFVTMTLLTGLHP*
Ga0126349_10889492	3300010861	Boreal Forest Soil	RRMTMPTGYVLGDMATKAAYFSVAVAAFIFVAMTLLPGLHP*
Ga0138514_1000894442	3300011003	Soil	MTMPTGYVLGELVTKAAYFSLAAAAFIFVAMTLLPGLHP*
Ga0137392_110588493	3300011269	Vadose Zone Soil	MTMPTGYVFGDIVTKAAYFSVAAAAFIFVTMTLLPGLHP*
Ga0137391_103612754	3300011270	Vadose Zone Soil	MGYVLGDIATKAAYFSVAMAAVIFVAMTLLTGLHP*
Ga0137391_113359922	3300011270	Vadose Zone Soil	MTMPTSYVLGDIASKAAYFSLAAAAFIFVTMTLFNGVHP*
Ga0120192_100042881	3300012021	Terrestrial	MNRSYAFSDLAVKAAFFSLAAAAFIFVLMLVLTGVHP*
Ga0137388_103885112	3300012189	Vadose Zone Soil	MTMLTGCVLGDIATKAAYFSVAAAAFIFVAMTLLPGLHP*
Ga0137388_113292931	3300012189	Vadose Zone Soil	RRLVMATGYVLSDVVTKMAYFSLAAAAFVFVAMILVTGLHP*
Ga0137364_114053211	3300012198	Vadose Zone Soil	MTMPTGYVLGDIVTKAAYFSVAAAAFIFVTMSLLPGLHP*
Ga0134028_11908311	3300012224	Grasslands Soil	RSDCRRMTMGYVLGDIATKAAYFSVAMAAFIFVTMTLLTGLHP*
Ga0137371_105441532	3300012356	Vadose Zone Soil	MPTGYVLGDIVTKAAYFSVAAAALIFVTMTLLPGLHP*
Ga0137390_110251321	3300012363	Vadose Zone Soil	MTIPMGYVLGDMATKAAYFSVAAAAFIFVAMTLLPGLHP*
Ga0137398_110418552	3300012683	Vadose Zone Soil	MTMPTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP*
Ga0137395_112439872	3300012917	Vadose Zone Soil	MTMPTGYVLGDMATKAAYFSVAAAAFIFVAMTLLPGLHP*
Ga0164298_111401491	3300012955	Soil	MGYTLGDIATKAAYFSVAAAAFIFVMMTLLPGLHP*
Ga0164302_105049171	3300012961	Soil	MGYALGDIATKAAYFSVAMEAFIFVTMTLLTGLHP*
Ga0164302_107439982	3300012961	Soil	MTMPRGYVLGDMATKAAYYSVAAAAFIFVAMTLFPGLHP*
Ga0164308_112234861	3300012985	Soil	MPTGYVLGDMATKAAYFSVAAAAFIFVAMTLLPGLHP*
Ga0164307_110312592	3300012987	Soil	MTMLTGYVLGDMVTKAAYFSLVALAFIFVAMTLLPGLHP*
Ga0164306_108309352	3300012988	Soil	MTMPRGYVLGDMATKAAYYSVAGAAFIFVAMTLLPGLHP*
Ga0164305_105051841	3300012989	Soil	MGYALGDIATKAAYFSVALAAFIFITMTLLTGLHP*
Ga0164305_113368372	3300012989	Soil	MPTGYILGDMVTKAAYFSLAAAAFIFVAMTLLPGLHL*
Ga0184618_103547031	3300018071	Groundwater Sediment	MTMPTGYVLGDMATKAAYFSVAAAAFIFVAMTLLPGLHP
Ga0184635_101207792	3300018072	Groundwater Sediment	MTMPTGYVLGDIATKAAYFSVAAAAFIFVAMTLLPGLLHP
Ga0066662_116648572	3300018468	Grasslands Soil	MTMPTGYVLGDIVTKAAYFSVAAAAFIFVTMTLLPGLHP
Ga0137408_14033767	3300019789	Vadose Zone Soil	VPTGYVLGDMAIKAAYFSVAAAAFIFVGMTLLPGLHP
Ga0193729_10273541	3300019887	Soil	MPTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0193728_12272862	3300019890	Soil	MTMPTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0210407_106491202	3300020579	Soil	MPTGYVLGDLATKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0210407_113332861	3300020579	Soil	MPTGYVLGDMVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0210403_103935313	3300020580	Soil	MPTGYVLGDVATKAAYFSVAVAAFIFVAMTLLPGLHP
Ga0210399_102012442	3300020581	Soil	MPTGYVLGDMATKAAYFSVAAAAFIFVAMTLLPGLHP
Ga0210399_110364061	3300020581	Soil	MAMPTGYVLGDLATKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0210399_114398151	3300020581	Soil	MGYTLGDIATKAAYFSVALAAFIFITMTLLTGLHP
Ga0210401_105264502	3300020583	Soil	MTMPRGYVLGDIATKAAYFSVAAAAFIFVAMTLLPGLHP
Ga0210406_101242475	3300021168	Soil	MTMPRGYVLGDMAAKAAYFSVAAAAFIFVAMTLLPGLHP
Ga0210406_107882552	3300021168	Soil	MPTGYVLGDMATKAAYFFVAVAAFIFVAMTLLPGLHP
Ga0210408_100417855	3300021178	Soil	MPRGYVLGDMATKAAYFSVAAAAFIFVAMTLLPGLHP
Ga0210408_104366421	3300021178	Soil	MPTGYILGDMVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0210397_113297942	3300021403	Soil	MTMPTGYVLGDIATKAAYFSVAAAAFIFVTMTLLPGLHP
Ga0210386_109001882	3300021406	Soil	MTMPTGYVLGEIVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0210402_113092541	3300021478	Soil	MPTGYVLGDMATKAAYFFVAVAAFIFVAMTLLPGLH
Ga0210410_114150941	3300021479	Soil	RNDCRRMTMPTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0210409_116837783	3300021559	Soil	MGYALGDIATKAAYFSVAMAAFIFVTMTLLPGLHP
Ga0209647_10512581	3300026319	Grasslands Soil	MGYVLGDIATKAAYFSVAMAAFIFVTMTLLTGLHP
Ga0179593_11858231	3300026555	Vadose Zone Soil	TGYVLGDIVTKAAYFSLAAAAYIFVAMTLLPGLHP
Ga0179587_108771961	3300026557	Vadose Zone Soil	MTMPTGYVLGELVTKAAYFSLAAAAVIFITMTLLPGLHP
Ga0208732_10032872	3300026984	Forest Soil	MTMPTGYVLGDLATKAAYFSVAAAAFIFVAMTLLPGLHP
Ga0207944_10175052	3300027105	Forest Soil	MAMPTGYVLGDLATKAAYFSVAAAAFIFVTMTLLPGLHP
Ga0208368_1101031	3300027161	Forest Soil	MPTGYVLGDMATKAAYFPVAVAAFIFVAMTLLPGLHP
Ga0209419_10304383	3300027537	Forest Soil	MLTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0209219_10809522	3300027565	Forest Soil	MPTGYVLGDMATKAAYFSLAAAAFIFVAMTLLPGLHF
Ga0209220_11463942	3300027587	Forest Soil	MPTGYVLGELVTKAAYFSLAAAAFIFITMTLLPGLHP
Ga0209331_10154984	3300027603	Forest Soil	MHTGYVLGDIVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0209528_10014938	3300027610	Forest Soil	MPTGYVLGDIVTKSAYFSLAAAAFIFVAMTLLPGLHF
Ga0209528_10798722	3300027610	Forest Soil	MTMPTSYVLGELVTKAAYFSLAAAAFIFITMTLLPGLHP
Ga0209217_11279001	3300027651	Forest Soil	MTMPTGYVLGDMATKAAYFPVAAAAFIFVAMTLLPGLHP
Ga0209736_11438772	3300027660	Forest Soil	MPTGYVLGELVTKAAYFSLAAAAFIFVTMTLLPGLHP
Ga0208990_10882162	3300027663	Forest Soil	MTMPTGYVLGELVTKAAYFSVAAAAFIFVAMTLLPGLHP
Ga0209118_11085862	3300027674	Forest Soil	MTMPTGYVLGELVTKAAYFSLAAAAFIFITMTLLPGLHP
Ga0208991_10720291	3300027681	Forest Soil	MPTGYVLGELVTKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0209328_101859181	3300027727	Forest Soil	MPTGYVLGDIATKAAYFSVAAAAFIFVTMTLLPGLHP
Ga0209040_101323023	3300027824	Bog Forest Soil	MTMPTGYVLGDMASKAAYFSMAVAAFIFVTMTLFTGLHP
Ga0209488_106655482	3300027903	Vadose Zone Soil	MPTGYVLGDLAAKAAYFSVAAAAFIFVAMTLLPGLHP
Ga0209488_108475512	3300027903	Vadose Zone Soil	MTMPTGYVLGELVTKAAYFSLAAAAFIFVTMTLLPGLHP
Ga0209069_107180032	3300027915	Watersheds	MTMPTGYVLGDLATKAAYFSLAAAAFIFVAMTLLPGLHP
Ga0307312_111344371	3300028828	Soil	TMPTGYVLGDMATKAAYFSVAAAAFIFVAMTLLPALHP
Ga0075394_103618763	3300030969	Soil	MTMPTGYVLGDMATKAAYFSVAVAAFIFVAMTLLPGLHP
Ga0170834_1125286941	3300031057	Forest Soil	MPTGYVLGDTVTKAAYFSLAAAAFIFVTMTLLPVLHP
Ga0170820_144405131	3300031446	Forest Soil	MPTGYVLGELVTKAAYFSLAAAAFFFVTMTLLPGLHP
Ga0170819_132374982	3300031469	Forest Soil	MTMPTGYVLGDIVAKSAYFFLAAAAFIFVAMTLLPGLHF
Ga0364937_061517_86_205	3300034113	Sediment	MTMPTGYALGEIATKAAYFSIAAAAFIFIAMTLLPGLHP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073976

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences