Metagenome / Metatranscriptome Family F073992

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F073992
Family Type	Metagenome / Metatranscriptome
Number of Sequences	120
Average Sequence Length	143 residues
Representative Sequence	FAQRELRGADAFTLRVTPELEPSYAVSKGVAVASTASSGLEQLSPARSPVTGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIGAAGVVVKEDANEPTDTTAELFLEIP
Number of Associated Samples	96
Number of Associated Scaffolds	120

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.85 %
% of genes near scaffold ends (potentially truncated)	95.83 %
% of genes from short scaffolds (< 2000 bps)	96.67 %
Associated GOLD sequencing projects	94
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (59.167 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (23.333 % of family members)
Environment Ontology (ENVO)	Unclassified (26.667 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (49.167 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 21.79% β-sheet: 30.77% Coil/Unstructured: 47.44%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 120 Family Scaffolds
PF00438	S-AdoMet_synt_N	64.17
PF02772	S-AdoMet_synt_M	16.67
PF02773	S-AdoMet_synt_C	5.00

COG ID	Name	Functional Category	% Frequency in 120 Family Scaffolds
COG0192	S-adenosylmethionine synthetase	Coenzyme transport and metabolism [H]	85.83

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	59.17 %
Unclassified	root	N/A	40.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	21.67 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.83 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	21.67 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.83 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Thermoleophilia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia	1.67 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.83 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.83 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Solirubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales	1.67 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.83 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.83 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Conexibacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae	0.83 %
unclassified Solirubrobacterales	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales	0.83 %
Micrococcaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae	0.83 %
Cystobacterineae	suborder	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae	0.83 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Conexibacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter	0.83 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.83 %
Archangiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae	0.83 %
Arthrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter	0.83 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.83 %
unclassified Arthrobacter	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter	0.83 %
Stigmatella	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella	0.83 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.83 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Arthrobacter sp. Hiyo1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo1	0.83 %
Stigmatella aurantiaca	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca	0.83 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.83 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.83 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.83 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	40.83 %
Stigmatella aurantiaca DW4/3-1	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	0.83 %
Arthrobacter sp. Hiyo1	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo1	0.83 %
Conexibacter woesei	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	0.83 %
Solirubrobacterales bacterium URHD0059	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	0.83 %
bacterium HR12	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	0.83 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300002077\|JGI24744J21845_10066275	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300002568\|C688J35102_118685280	Not Available	585	Open in IMG/M
3300003998\|Ga0055472_10234769	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → unclassified Solirubrobacterales → Solirubrobacterales bacterium URHD0059	575	Open in IMG/M
3300004081\|Ga0063454_101109276	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	647	Open in IMG/M
3300004480\|Ga0062592_101493776	All Organisms → cellular organisms → Bacteria	648	Open in IMG/M
3300005339\|Ga0070660_100675033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	866	Open in IMG/M
3300005456\|Ga0070678_101637435	All Organisms → cellular organisms → Bacteria	605	Open in IMG/M
3300005615\|Ga0070702_100351244	All Organisms → cellular organisms → Bacteria	1039	Open in IMG/M
3300005719\|Ga0068861_100722929	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300005844\|Ga0068862_101535700	All Organisms → cellular organisms → Bacteria	672	Open in IMG/M
3300006169\|Ga0082029_1719874	All Organisms → cellular organisms → Bacteria	1218	Open in IMG/M
3300006844\|Ga0075428_101429070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Thermoleophilia → Solirubrobacterales → Conexibacteraceae → Conexibacter → Conexibacter woesei	726	Open in IMG/M
3300006846\|Ga0075430_100474309	All Organisms → cellular organisms → Bacteria	1033	Open in IMG/M
3300006853\|Ga0075420_100612780	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	940	Open in IMG/M
3300006876\|Ga0079217_11027765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	606	Open in IMG/M
3300006881\|Ga0068865_100135876	All Organisms → cellular organisms → Bacteria	1848	Open in IMG/M
3300007004\|Ga0079218_11011718	Not Available	834	Open in IMG/M
3300007004\|Ga0079218_13623061	Not Available	525	Open in IMG/M
3300007004\|Ga0079218_14004601	Not Available	501	Open in IMG/M
3300009094\|Ga0111539_11434160	Not Available	801	Open in IMG/M
3300009094\|Ga0111539_13415450	Not Available	510	Open in IMG/M
3300009100\|Ga0075418_12922253	Not Available	521	Open in IMG/M
3300009100\|Ga0075418_13165629	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300009148\|Ga0105243_11078068	All Organisms → cellular organisms → Bacteria	810	Open in IMG/M
3300009162\|Ga0075423_12524081	Not Available	561	Open in IMG/M
3300009177\|Ga0105248_12419040	Not Available	598	Open in IMG/M
3300009789\|Ga0126307_10572010	All Organisms → cellular organisms → Bacteria	912	Open in IMG/M
3300009840\|Ga0126313_10863811	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300010036\|Ga0126305_10520219	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	795	Open in IMG/M
3300010036\|Ga0126305_10646902	Not Available	713	Open in IMG/M
3300010037\|Ga0126304_11016038	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300010037\|Ga0126304_11037503	All Organisms → cellular organisms → Bacteria	560	Open in IMG/M
3300010038\|Ga0126315_11049906	Not Available	548	Open in IMG/M
3300010039\|Ga0126309_10333400	Not Available	887	Open in IMG/M
3300010039\|Ga0126309_10382501	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	837	Open in IMG/M
3300010040\|Ga0126308_10128742	All Organisms → cellular organisms → Bacteria	1581	Open in IMG/M
3300010040\|Ga0126308_10727603	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	684	Open in IMG/M
3300010041\|Ga0126312_10477397	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	891	Open in IMG/M
3300010041\|Ga0126312_11040729	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300010042\|Ga0126314_10795142	Not Available	696	Open in IMG/M
3300010042\|Ga0126314_10871690	All Organisms → cellular organisms → Bacteria	665	Open in IMG/M
3300010044\|Ga0126310_10507741	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	882	Open in IMG/M
3300010044\|Ga0126310_10774744	All Organisms → cellular organisms → Bacteria	735	Open in IMG/M
3300010045\|Ga0126311_10757505	All Organisms → cellular organisms → Bacteria	780	Open in IMG/M
3300010045\|Ga0126311_11698654	Not Available	533	Open in IMG/M
3300010145\|Ga0126321_1043497	Not Available	644	Open in IMG/M
3300010145\|Ga0126321_1403923	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300010375\|Ga0105239_13095225	All Organisms → cellular organisms → Bacteria	542	Open in IMG/M
3300010399\|Ga0134127_12900947	All Organisms → cellular organisms → Bacteria	558	Open in IMG/M
3300011119\|Ga0105246_11164735	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	708	Open in IMG/M
3300011332\|Ga0126317_10749934	All Organisms → cellular organisms → Bacteria	911	Open in IMG/M
3300011332\|Ga0126317_10792181	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium HR12	688	Open in IMG/M
3300011332\|Ga0126317_10930534	Not Available	508	Open in IMG/M
3300011332\|Ga0126317_11036903	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300011333\|Ga0127502_11332476	Not Available	540	Open in IMG/M
3300012093\|Ga0136632_10189630	Not Available	939	Open in IMG/M
3300012212\|Ga0150985_114183263	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	776	Open in IMG/M
3300012469\|Ga0150984_101993538	Not Available	1206	Open in IMG/M
3300012469\|Ga0150984_112112063	Not Available	511	Open in IMG/M
3300012469\|Ga0150984_116319614	Not Available	719	Open in IMG/M
3300012914\|Ga0157297_10456448	Not Available	527	Open in IMG/M
3300014487\|Ga0182000_10327974	All Organisms → cellular organisms → Bacteria	650	Open in IMG/M
3300014745\|Ga0157377_10706037	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales → Cystobacterineae → Archangiaceae → Stigmatella → Stigmatella aurantiaca → Stigmatella aurantiaca DW4/3-1	733	Open in IMG/M
3300015077\|Ga0173483_10142997	All Organisms → cellular organisms → Bacteria	1047	Open in IMG/M
3300015200\|Ga0173480_11178106	Not Available	516	Open in IMG/M
3300015201\|Ga0173478_10378850	Not Available	670	Open in IMG/M
3300017965\|Ga0190266_11235944	Not Available	520	Open in IMG/M
3300018083\|Ga0184628_10698628	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300018429\|Ga0190272_11528546	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300018429\|Ga0190272_12042257	All Organisms → cellular organisms → Bacteria	609	Open in IMG/M
3300018465\|Ga0190269_11529948	Not Available	551	Open in IMG/M
3300018466\|Ga0190268_11511845	Not Available	584	Open in IMG/M
3300018466\|Ga0190268_11969130	All Organisms → cellular organisms → Bacteria	535	Open in IMG/M
3300018469\|Ga0190270_12312118	Not Available	599	Open in IMG/M
3300018476\|Ga0190274_13021608	Not Available	565	Open in IMG/M
3300018481\|Ga0190271_13692593	Not Available	512	Open in IMG/M
3300018910\|Ga0193598_1035862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1216	Open in IMG/M
3300018920\|Ga0190273_11160291	Not Available	653	Open in IMG/M
3300019269\|Ga0184644_1098936	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Micrococcaceae → Arthrobacter → unclassified Arthrobacter → Arthrobacter sp. Hiyo1	553	Open in IMG/M
3300019767\|Ga0190267_11644058	Not Available	505	Open in IMG/M
3300020081\|Ga0206354_10318892	Not Available	516	Open in IMG/M
3300020181\|Ga0196958_10124132	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	874	Open in IMG/M
3300021184\|Ga0196959_10088339	Not Available	697	Open in IMG/M
3300021951\|Ga0222624_1011347	Not Available	620	Open in IMG/M
3300023269\|Ga0247773_1213035	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300025893\|Ga0207682_10218817	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300025919\|Ga0207657_10576642	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	879	Open in IMG/M
3300025923\|Ga0207681_10316975	All Organisms → cellular organisms → Bacteria	1239	Open in IMG/M
3300025927\|Ga0207687_10454164	All Organisms → cellular organisms → Bacteria	1063	Open in IMG/M
3300025961\|Ga0207712_10304378	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1310	Open in IMG/M
3300026041\|Ga0207639_11961454	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300028589\|Ga0247818_10634902	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300028590\|Ga0247823_11017064	Not Available	622	Open in IMG/M
3300028596\|Ga0247821_10499848	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	773	Open in IMG/M
3300028597\|Ga0247820_10858155	Not Available	641	Open in IMG/M
3300028710\|Ga0307322_10193947	All Organisms → cellular organisms → Bacteria	552	Open in IMG/M
3300028716\|Ga0307311_10102080	Not Available	802	Open in IMG/M
3300028719\|Ga0307301_10178969	Not Available	686	Open in IMG/M
3300028810\|Ga0307294_10082900	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	990	Open in IMG/M
3300028812\|Ga0247825_10310374	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300028824\|Ga0307310_10660289	Not Available	535	Open in IMG/M
3300028875\|Ga0307289_10376293	All Organisms → cellular organisms → Bacteria	584	Open in IMG/M
3300030336\|Ga0247826_10133236	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1609	Open in IMG/M
3300030336\|Ga0247826_10147718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1544	Open in IMG/M
3300030502\|Ga0268258_10119915	All Organisms → cellular organisms → Bacteria	607	Open in IMG/M
3300031058\|Ga0308189_10357708	Not Available	590	Open in IMG/M
3300031091\|Ga0308201_10279856	Not Available	586	Open in IMG/M
3300031091\|Ga0308201_10358812	Not Available	537	Open in IMG/M
3300031229\|Ga0299913_10161429	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	2214	Open in IMG/M
3300031852\|Ga0307410_10951450	Not Available	738	Open in IMG/M
3300031995\|Ga0307409_101702162	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	659	Open in IMG/M
3300031996\|Ga0308176_11686147	All Organisms → cellular organisms → Bacteria	676	Open in IMG/M
3300032004\|Ga0307414_11846125	Not Available	564	Open in IMG/M
3300032080\|Ga0326721_10406864	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	789	Open in IMG/M
3300032080\|Ga0326721_10848096	Not Available	575	Open in IMG/M
3300032126\|Ga0307415_101224707	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	708	Open in IMG/M
3300033550\|Ga0247829_10417887	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	71.67%
Host-Associated	Host-Associated	28.33%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	61.67%
Plants	Host-Associated → Plants	28.33%
Aquatic	Environmental → Aquatic	10.00%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	60.83%
Rhizosphere	Host-Associated → Plants → Rhizosphere	21.67%
Freshwater	Environmental → Aquatic → Freshwater	8.33%
Rhizoplane	Host-Associated → Plants → Rhizoplane	5.83%
Marine	Environmental → Aquatic → Marine	0.83%
Sediment	Environmental → Aquatic → Sediment	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter	0.83%
Phyllosphere	Host-Associated → Plants → Phyllosphere	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	55.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	15.83%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	5.83%
Soil	Host-Associated → Plants → Rhizosphere → Soil	5.83%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	4.17%
Loam	Environmental → Terrestrial → Soil → Loam	2.50%
Sand	Environmental → Terrestrial → Soil → Sand	2.50%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.67%
Ice	Environmental → Aquatic → Freshwater → Ice	0.83%
Wetlands	Environmental → Aquatic → Marine → Wetlands	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.83%
Soil	Host-Associated → Plants → Rhizoplane → Soil	0.83%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	0.83%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	43.33%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	15.83%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	7.50%
Unclassified	Environmental → Aquatic → Freshwater → Groundwater → Unclassified	5.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	5.83%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	4.17%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	4.17%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	2.50%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.67%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.67%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Marine → Wetlands → Unclassified	0.83%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.83%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.83%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Rhizoplane → Soil → Unclassified	0.83%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	0.83%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.33%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	16.67%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	7.50%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	6.67%
Soil	Environmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil	5.83%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.33%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	3.33%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.50%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.50%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	1.67%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.67%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.67%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.67%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	1.67%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	0.83%
Natural And Restored Wetlands	Environmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands	0.83%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.83%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.83%
Termite Nest	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Termite Nest	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.83%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.83%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	0.83%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	0.83%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.83%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.83%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	0.83%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	0.83%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300002077	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3	Host-Associated	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300003998	Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D2	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005456	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG	Host-Associated	Open in IMG/M
3300005615	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005844	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2	Host-Associated	Open in IMG/M
3300006169	Termite nest microbial communities from Madurai, India	Environmental	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006846	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4	Host-Associated	Open in IMG/M
3300006853	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD4	Host-Associated	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300006881	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2	Host-Associated	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009148	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010145	Soil microbial communities from Hawaii, USA to study soil gas exchange rates - KP-HI-INT metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010399	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300011332	Soil microbial communities from California, USA to study soil gas exchange rates - SR-CA-SC2 metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300011333	Cornfield soil microbial communities from Stanford, California, USA - CI-CA-CRN metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012914	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015201	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S014-104B-1 (version 2)	Environmental	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018083	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_5_b1	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018910	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300019269	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300020081	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020181	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_10	Environmental	Open in IMG/M
3300021184	Soil microbial communities from Anza Borrego desert, Southern California, United States - S1+v_20	Environmental	Open in IMG/M
3300021951	Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023269	Plant litter microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-L092-311B-6	Environmental	Open in IMG/M
3300025893	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025919	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025923	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025927	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300028590	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_PalmiticAcid_Day30	Environmental	Open in IMG/M
3300028596	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glycerol_Day14	Environmental	Open in IMG/M
3300028597	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day14	Environmental	Open in IMG/M
3300028710	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_380	Environmental	Open in IMG/M
3300028716	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198	Environmental	Open in IMG/M
3300028719	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_182	Environmental	Open in IMG/M
3300028799	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_123	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300028812	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Vanillin_Day48	Environmental	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300028875	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_143	Environmental	Open in IMG/M
3300028881	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_116	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030502	Agave microbial communities from Guanajuato, Mexico - As.Sf.rz (v2)	Host-Associated	Open in IMG/M
3300031058	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031229	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT155D38	Environmental	Open in IMG/M
3300031852	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300031996	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R2	Environmental	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032080	Soil microbial communities from Southern Great Plains, Lamont, Oklahoma, United States - SGP_1_2016	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033550	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24744J21845_100662751	3300002077	Corn, Switchgrass And Miscanthus Rhizosphere	LEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDANQPTDTTAELFLEIP*
C688J35102_1186852801	3300002568	Soil	QPSYAVARGTVVASTAQAGMAQLSPPRAAVTGRRAMDEIAPAKGAKVEALGFLDPRQLLALGERTGLRVPGFPAVRDDLRRFRAAGAVVEEDTDHPTDTTAELFLEIP*
Ga0055472_102347691	3300003998	Natural And Restored Wetlands	SLPTAAGIELEDLLAPLGDEAMLSVRPGAAAPIFTLAARTRDAASARESLAQLQGAVSDRLGGGPFQRRELRGADAFSLQVTPELEPSYAVSKGAVVASTAGSGLEQLRPARSPVTASPALEDLVPEEGEKVEALVFLDPRQLLTLGERTGLSALTSPAMRDDLGRMGKAGAVVKEDDNQPTDTTAELFLE
Ga0063454_1011092762	3300004081	Soil	VSRGMLVASTAPSGLGQLRPAQVPITGSRALEAVAPEQGAKVEALVFLDPRQLLALGERTGLPVLGSPAVRDDLRRIRAVGAVVEEDAYHPTDTTAELFLEIP*
Ga0062592_1014937762	3300004480	Soil	YSVTKDAVVASTASSGLEQLRPARNPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP*
Ga0070660_1006750331	3300005339	Corn Rhizosphere	EAVLTVQAGEAAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFEQRELHGADAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLPVLVSPAVRDDLRRIRAAGGVVQEDADHPTDTTAELFLEIP*
Ga0070678_1016374351	3300005456	Miscanthus Rhizosphere	VLTVQAGEAAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFEQRELRGGDAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP*
Ga0070702_1003512441	3300005615	Corn, Switchgrass And Miscanthus Rhizosphere	GGGPFQQRELRGGDAFTLQVTPELAPSYSVAKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQSTDTTAELFLEIP*
Ga0068861_1007229292	3300005719	Switchgrass Rhizosphere	RTRDAASTRESLARLQGPVSARLGGGPFEQRELRGGDAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP*
Ga0068862_1015357002	3300005844	Switchgrass Rhizosphere	FGGGPFQQRELRGGDAFTLQVTPELAPSYSVAKDAVVASTAGSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP*
Ga0082029_17198741	3300006169	Termite Nest	TRPATFSPSLIGHAPDDAAAHVSLPGLAAAVDMFSRAGGGAIVDGLREALPQAAGIELEDLLAPLGDEAVVSVRAGEAAPIFTLAARARDEQSTRESMARVQGPVSDRLGGGPFEQRELHGADAFTLRVTPELEPSYAVSKGAVVVSTAASGLDQLRPARSPATGWSVVDDQLPDWEGEKVEALVFLDPRQLLTLGERTGLRALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0075428_1014290702	3300006844	Populus Rhizosphere	ELADLIAPLDGEAALTVTAGEAAPVFTLAARTRDQASTRESLARLQGPVSEWLGGGAFAQEQVRGTDAFSLSVTPELEPSYAVSKDAVVASTAGSGLEQLGPARSPVTGASVLKDLMPEEGQKVEALGFLDPRQLLALGERTGLKALSSPTARDDLGRIRAAGAVVKEDANQPTDTTAELFLQIP*
Ga0075430_1004743091	3300006846	Populus Rhizosphere	FTLRVTPELEPSYAVSKGTVVASTAESGLEQLGPARSPATASSLVEDLLPDGEGEKVEALVFLDPRQLLTLGERTGLSALSSPAARDDLGRMGRAGAVVREDDDEPTDTTAELFLEIP*
Ga0075420_1006127801	3300006853	Populus Rhizosphere	GSGLDQLRPARSPATTWPVIEDQLPEWEDGKVEALVFLDPRQLLTLGERTGLSALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0079217_110277651	3300006876	Agricultural Soil	RGADAFTMNVTPELEPSYAVSKGAVVASTASSGLEQLRPARSPATAAAVLEDLMPEEGEKVEALAFIDPRKLLALGERTGLRALSSPAARDDLSRMRNAGAVVKEDDNQPTDTTAELFLEIP*
Ga0068865_1001358761	3300006881	Miscanthus Rhizosphere	VASTASSGLEQLRPARNPATGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDANQPTDTTAELFLEIP*
Ga0079218_110117181	3300007004	Agricultural Soil	RELRGADAFTLRVTPELEPSYAVAKDAVVASTAGSGLEQLGDAKDPVTKDSSFGEVMPEGGEKVEALAFIDPRKLLALGETTGLRALSSPAARDDLSRMRNAGAVVKEDDNQPTDTTAELFLEIP*
Ga0079218_136230611	3300007004	Agricultural Soil	PTAAGIELEDLLAPLGDEAVLAVQAGEAAPVSTLAARTRDAASTRESLARLQGPVSDWLGGGPFEQRELRGADAFTLQVTPELEPSYAVSKGAVVASTASSGLEQLRPARSPATASPALEELVPEEGEKVEALVFLDPRQLLTLGDRTGLQALTTPAVRDDLGRMGKAGAVVKED
Ga0079218_140046011	3300007004	Agricultural Soil	AGIELEDLLAPVSDEAVLAVQAGETAPIFTIAARTRDEASTRESLARLQGPVSDRLGGGPFEQRELHGADAFTLRVTPELEPSYAVSKDAVVASTAGSGLEQLRPARSPATASPALEELVPEEGAKVEALVFLDPRQLLTLGDRTGLQALTTPAVRDDLGRMGKAG
Ga0111539_114341601	3300009094	Populus Rhizosphere	IEDALPAAAGVELEDVLAPLGEEAVLTVRAGEAAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFQQRELRGGDAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP*
Ga0111539_134154501	3300009094	Populus Rhizosphere	STRESLARLQGPVSNRLGAGPFEQRELRGADAFTLRVTPELEPSYAVSKRTAVVSTAASGLDQLRPARSPATTWPVVEDQLPDWEGEKVEALVFLDPRQLLTLGERTGLRALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0075418_129222531	3300009100	Populus Rhizosphere	APLGEEAVLTVQAGESAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFEQRELRGGDAFTLQVTPELAPSYSVAKDAVVASTAGSGLEQLRPARTPATGEPVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQSTDTIAE
Ga0075418_131656292	3300009100	Populus Rhizosphere	PELEPSYAVSKGTVVASTAESGLEQLGPARSPATASSLVEDLLPDGEGEKVEALVFLDPRQLLTLGERTGLSALSSPAARDDLGRMGKAGAVVREDDDEPTDTTAELFLEIP*
Ga0105243_110780681	3300009148	Miscanthus Rhizosphere	AIRSISAVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQSTDTTAELFLEIP*
Ga0075423_125240811	3300009162	Populus Rhizosphere	PVTDQLQPTYAIAHGAVVASTARSGLAQLGRAKSPVTEAEALKQVMPGKDAKVEALGFLDSRQLLALAERTGLRPLSSPAVRDDLGRIRSAAAVVEEDGDHPTDTTAELFLQIP*
Ga0105248_124190401	3300009177	Switchgrass Rhizosphere	TDAFTLSVTPELEPSYAVSKDTLVASTASSGLEQLGRARSPVTGASVLKDLMPDEGQKVEALGFLDPRQLLALGERTGLKALSSPTARDDLGRIRAAGLVVKEDANQPTDTTAELFLEIP
Ga0126307_105720102	3300009789	Serpentine Soil	DRLGGGPFEQRELRGTDAFTLRVTPELEPSYAVSKGAVVVSTAASGMDQLRPARSPATTWPVVEDQLPEWEGEKVEALVFLDPRQLLTLGERTGLRALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0126313_108638112	3300009840	Serpentine Soil	STAASGLDQLRPARSPATTWPVIEDQLPDWEDGKVEALVFLDPRQLLTLDERTGLRALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0126305_105202191	3300010036	Serpentine Soil	TRDEDSTRESLARLQGPLSERLGGEPFTQSRVRGADAFTLRATPQLQPSYAISKGAVVASTAASGLEQLDKEGSPITGASVLKGLMPGEGEKVEALGFLDSRQLLALGERTGIRALSSPAARDDLGRIRTAGAVVKEDANEPTDTTAELFLEIP*
Ga0126305_106469021	3300010036	Serpentine Soil	DSLARLQGPLSGRLAGGAPFTQRDAAGTDAFTLPVTDALEPSYAVSKDTAVASTAASGLEQLGPARSPVTGASVLKDLVPEEGQKVEALGFLDPRQLLASGERTGLKALSSPAARDALGRIRAAGAVVKEDADEPTDTTAELFLEIP*
Ga0126304_110160382	3300010037	Serpentine Soil	TLTARTRDEDSTRESLARLQGPLSERLGGEPFTQSRVRGADAFTLRATPQLQPSYAISKGAVVASTAASGLEQLDKTGSPITGASVLKDLMPGKGEKLEALGFLDSRQLLALGERTGIRALSSPAARDDLGRIRTAGAVVKEDANEPTDTTAELFLEIP*
Ga0126304_110375032	3300010037	Serpentine Soil	AARTRDQASTRESLARLQGPVSAWLGGGPFAQSEVRGTDAFTLSVTPELEPSYAVSKDTAVASTAASGLEQLGPARSPVTGASVLKDLVPEEGQKVEALGFLDPRQLLASGERTGLKALSSPAARDALGRIRAAGAVVKEDADEPTDTTAELFLEIP*
Ga0126315_110499061	3300010038	Serpentine Soil	ALVSGLEEALPAAAGIELEDLLAPLGDEAVLSVRAGEAAPIFTLAARTRDEASTRESLARLQGTVSDRLGGGAFEQRELRGADAFTLRVTPELQPSYAVSKGAVVASTAESGLEQLGTARSPATASPMLEDLMPDGEDEKVEALVLLDPRQLLTLGERTGLRALSSPAARDDLGRMGKAGAV
Ga0126309_103334001	3300010039	Serpentine Soil	ELEDLLAPLSEEAALTVTAGETAPVVTLTARTRDEASTRESLARLQGPVSEQLGSGPFAQSEVRGADAFSLRATPQLEPSYAISKGAVVASTAASGLEQLGKARSPVTGAPVFDELMPEESEKVEALGFLDSRQLLALGERTGLRALSSPAARDDLGRIRTAGAVVKEDATQPTDTTAELFLEIP*
Ga0126309_103825011	3300010039	Serpentine Soil	GEAAPVFTLAARTRDQASTRESLARLQEPVSAWLGGGPFAQKQVRGTDAFTLSVTPELEPSYAVSKDTAVASTAASGLEQLGPARSPVTGASVLKELMPEEGARVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRISAAGVVVKEDVNEPTDTTAELFLEIP*
Ga0126308_101287421	3300010040	Serpentine Soil	APIFTLAARTRDEASTRESLARLQGTVSDRLGGGAFEQRELRGADAFTLRVTPELQPSYAVSKGAVVASTAESGLEQLGTARSPATASPMLEDLMPDGEDEKVEALVLLDPRQLLTLGERTGLRALSSPAARDDLGRMGKAGAVVKEDDNEPTDTTAELFLEIP*
Ga0126308_107276032	3300010040	Serpentine Soil	SDRLGGGAFEQRELRGADAFTLSVTPELEPSYVVSKGVAVASTARSGLEQLGSARSPVTGASALDGLMPEEGAKVEALGFLDPRQLLALGERTGLRALMSPATRDDLGRIGNAGAVVKEDADQPTDTTAELFLEIP*
Ga0126312_104773972	3300010041	Serpentine Soil	LARLQEPLSERLGGGPFTQSELRGADAFTLEATPQLEPSYAISKGAVVASTATSGLEQLGKARIPVTSAPVLEDLLPEEGEKVEALGFLDSRQLLALGERTGLRALSSPAARDDLGRIRAAGAVVKEDANEPTDTTAELFLEIP*
Ga0126312_110407292	3300010041	Serpentine Soil	SLARVQGPVSERLGGGPFEQRRLDGADAFTLHATPVLEPSYAVSKGAVVASTAESGLDQLGPARSPATAAPVLEELIPEKGDQVEALVFLDPRKLLALGERTGLRALSSPAARDDLGRIRAAGAVVKEGDNQPTDTTAELFLEIP*
Ga0126314_107951422	3300010042	Serpentine Soil	MRTGDEASTRESLARLQGPLSEQLGSGPFTQSEVRGADAFSLRATPQLEPSYAISKGAVVASTAASGLEQLGKARSPVTGAPLFEELMPEEGEKVEALGFLDSRQLLALGERTGLRALTSPAARDDLGRIRTAGAVVKEDANEPTDTTAELFLEIP*
Ga0126314_108716902	3300010042	Serpentine Soil	ADAFTLRVTPELQPSYAVSKGAVVASTAESGLEQLGTARSPATASPMLEDLMPDGEDEKVEALVLLDPRQLLTLGERTGLRALSSPAARDDLGRMGKAGAVVKEDDNEPTDTTAELFLEIP*
Ga0126310_103730161	3300010044	Serpentine Soil	QVTIARGATAPVFTVAARTRDEAATRDGLARLQGPLGDRLAGGTPFTQFQRGGTPAFALPVTPQLEPTYAVSHGTMVASTARSGLDQLAGAKTPATEAGAMKEVMPEDGTKVEALGFLDARQLLALAERTGLEAFSSPAVRDDLGRIRSAGAVVEEDGDHSTDTTAELFLQIP*
Ga0126310_105077411	3300010044	Serpentine Soil	RLGGGPFQQRELRGGADAFSLRVTPQLEPSYAVAKGVAVASTAGSGLAQLGPARSPMTDASVLKDLMPEQGAKVEALGFLDPRQLLALGERTGLPGLSSPAMRDDLGRIRTAGAVVKEDATQPTDTTAELFLEIP*
Ga0126310_107747442	3300010044	Serpentine Soil	ELEDLLAPLGDEAVLSVRAGEAAPIFTLASRTRDEASTRESLARLQGPVSNRLGGGPFEQRELRGADAFTLRVTPELEPSYAVSKSSVVVSTAASGLDQLRPARSPAATWPVIEDQLPDWEDGKVEALVFLDPRQLLTLGEPTGLRVLTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0126311_107575052	3300010045	Serpentine Soil	VASTARSGLEQLGSARSAVTGASVLERLMPEKGAKVEALGFLDPRQLLALGERTGLRVLTSPAARDDLGRMGKAGAVVKEDADQPTDTTAELFLEIP*
Ga0126311_116986541	3300010045	Serpentine Soil	ARTRDEASTKEALARLQGPVSARLGGGPFQQRELRGGADAFSLRVTPQLEPSYAVAKGVAVASTAGSGLAQLGPARSPVTDASVLKDLMPEQGAKVEALGFLDPRQLLALGERTGLPGLSSPAMRDDLGRIRTAGAVVKEDATQPTDTTAELFLEIP*
Ga0126321_10434971	3300010145	Soil	RLQGTVSDRLGAGPFEHRELRGADAFTLKVTPELEPSYAVSKDAVVVSTAGSGLDQLRPARSPATTWPVVEDQLPDWQGEKVEALVFLDPRQLLTLGERTGLRALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0126321_14039232	3300010145	Soil	AYALSVTPQLEPSYAVSEGAVVASTAQSGLDQLSKAKTPVTEAGALQEVMPEEGAKVEALGFLDSRQLLALAERTGLEALSSPAVRDDLGRIRSAGAVVEEDGDDSTDTTAELFLQIP*
Ga0105239_130952251	3300010375	Corn Rhizosphere	RGTQVGHHERPLLELAVAEGEQGGTPAFALHVTDRLEPTYAVAHGAVVASTARSGLAQLGDAKTPVTKAEALKQVMPGEDAKVEALGFLDSRQLLALAERTGLGSLSSPAVRDDLGRIRAAGAVVEEDGDHPTDTTAELFLQIP*
Ga0134127_129009472	3300010399	Terrestrial Soil	ASTRESLARLQGPVSARLGGGPFEQRELHGADAFTLQVTPELEPSYAVSKGTVVASTAGSGLDQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDANQPTDTTAELFLEIP*
Ga0105246_111647351	3300011119	Miscanthus Rhizosphere	DAFSLKVTPELEPSYAVSKGAVVASTAGSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLQAFSSPAARDDLGRIRAVGLVVKEDVNQPTDTTAELFLEIP*
Ga0126317_107499341	3300011332	Soil	QTPIADRLAPGTPFTQFERAGTPAFALPVTAQLEPSYAISHGTLVASTARSGLDQLGDAKAPVTEAAALKEVMPEEGAKVEALGFLDPRQLLALGERTGLRALTSPAARDDLGRMGKAGAVVKEDADQPTDMTAELFLEIP*
Ga0126317_107921812	3300011332	Soil	AFTQLDQDGAEAYSLNVTPELQPTYAVSKGAVVASTQRSGTEQLAPAKAPLTENEVLRKVSPDGDAKVEALGFLDSRQLLALAERTGLQALSSPAVRDDLGRIRSAAAVVEEDGDHPTDTTAELFLQIP*
Ga0126317_109305341	3300011332	Soil	PVFTLAARTRDEASTREALARLQGPVSARLGGGPFQQRALRGGADAFSLRVTPELEPSYTVAKGVAVASTAGSGLEQLGPARSPVTDASVLKDLMPEEGAKVEALGFLDPRQLLALGERTGLPGLSSPAMRDDLGRIRTAGAVVKEDATQPTDTTAELFLEIP*
Ga0126317_110369032	3300011332	Soil	VSERLGAGAFEMGELRGADTFSLKVTPELEPSYAVSKGAVVVSTAASGLDQLRPARSPATTWPVVEDQLPDWEDGKVEALVFLDPRQLLTLGERTGLKALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0127502_113324761	3300011333	Soil	STATSGLEQLGSARSPVTGASVLEDLMPGEGEKVEALGFLDSRQLLALGERTGLRALSSPAARDDLGRIRAAGAVVKEDATQPTDTTAELFLEIP*
Ga0136632_101896301	3300012093	Polar Desert Sand	EPSYALARGALVASSGRSGLGQLNPARTPITGNAALGEVLPEEGAKVEALGFFDSRQLLALGERTGLQAFSSPAVRDDLGRIRAAGAVVAEDAKNPTDTTVELFLETP*
Ga0150985_1141832632	3300012212	Avena Fatua Rhizosphere	GPFQQRELRGGADAFSLRVTPELEPSYAVAKGVAVASTAGSGLEQLGPARSPVTDASVLKDLMPEEGAKVEALGFLDPRQLLALGERTGLPGLSSPAMRDDLGRIRTAGAVVKEDATQPTDTTAELFLEIP*
Ga0150984_1019935381	3300012469	Avena Fatua Rhizosphere	LGGGPFEQRELRGADAFTLRATPELEPSYAVSKGAVVASTASSGLEQLGAARHPITENPSIGEVLTDEKEGVEALGFLDSRQLLALGERTGLRAVSSPAARDDLGRISAVAAVVKEDDNEPTDTTAELFLEIP*
Ga0150984_1121120631	3300012469	Avena Fatua Rhizosphere	PCALPIPRGEASTKEALARLQGPVSDRLGGGPFQQRALRGGADAFSLRVTPELEPSYAVAKGVAVASTAGSGLEQLGPARSPVTDASVLKDLMPEEGAKVEALGFLDPRQLLALGERTGLPGLSSPAMRDDLGRIRTAGAVVKEDATQPTDTTAELFLEIP*
Ga0150984_1163196141	3300012469	Avena Fatua Rhizosphere	SGLEQLGPSKDPLTRNPTFGEVMPHEGDRVEALGFLDPRQLLALGERTGLPALSSPAARDDLGRIRAAGAVVKEDANQPTDTTAELFLEIP*
Ga0157297_104564482	3300012914	Soil	STASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLQAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLLTP*
Ga0182000_103279741	3300014487	Soil	LRPARSPATTWPVVEDRLPDWEGERVEALVFLDPRQLLTLGERTGLRALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP*
Ga0157377_107060372	3300014745	Miscanthus Rhizosphere	FTLAARTRDAASTRESLARLQGPVSARFGGGPFQQRELRGGDAFTLQVTPELAPSYSVAKDAMVASTASSGLEQLRPARNPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP*
Ga0173483_101429972	3300015077	Soil	DLLAPIGDEAVLSVGADEAAPTFTLAARTRDAASTRESLARLQGPVSARLGGGPFEQRELRGGDAFTLQVTPELAPSYSVAKDAVVASTAGSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP*
Ga0173480_111781061	3300015200	Soil	DVLAPLGEEAVLTVQAGEAAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFQQRELRGGDAFTLQVTPELAPSYSVAKDAVVASTAGSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLQAFGSPAARDDLGRIRAAGLVVKEDVNQPT
Ga0173478_103788501	3300015201	Soil	TLTAGTRDARSSRESMARLQGVVSSRLGAGPFTRRGLRGADAFSLRVTPELEPSYAVSKSTVVASTAGSGLDQLRPARSPATAAPVLEELMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP*
Ga0190266_112359441	3300017965	Soil	LSTAASGLEQLRPARSPATGASVLEDLLPEEGEKVEALGFLDPRQLLALGERTGLAALSSPAARDDLGRIRAAGLVVKEDANQPTDTTAELFLQIP
Ga0184628_106986282	3300018083	Groundwater Sediment	PELEPSYAVSKGVAVASTAGSGLEQLIPARSPVTGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP
Ga0190272_115285462	3300018429	Soil	LEEALPTAAGLELEDLLTPLSDEAALTVTAGEAAPVFTLTARTRDEASSRESLARLQGPVSERLGGGPFAQSELRGADAFTLEATPQLEPSYAVSKGAVVASTATSGLEQLGPARSSVTSASVLEDMVPEEGEKVEALGFLDSRQLLALGERTGLRALSSPAARDDLGRIRTVGAVVKEDATQPTDTTAELFLEIP
Ga0190272_120422572	3300018429	Soil	ALARLQGPLAGQLAGGSPFTQSTARGADAFTLPVTDALEPSYAVAKDVLVASTARSGLDQLGSAKAPITGASALRRVMPDEDAKVEALGFLDPRALLALGERAGLPAPSSPAVRDDLRRIRAAGLVVVEDADKPTDTTAELFLESL
Ga0190269_115299482	3300018465	Soil	YTLAVTPELEPTYALAQGTLVASTARSGLSQLDPAKTPVTGSEVLKEVIPDGDTKVEALGFLDSRRLLALAERTGLQALASPAARDDLGRIRTAGVAVEDDGDHPTDTTAELFLQIP
Ga0190268_115118451	3300018466	Soil	DEAVLSVRSGEVAPIFTLAARTRDAASTRESLARLQGTVSDRLGAGPFEQRELRGADAFTLRVTPELEPSYAVSKGTVVASTAESGLEQLGPARSPATASSFVEDLMPDGEGEKVEALVFLDPRQLLTLGDRTGLQALTSPAMRDDLGRMGKAGAVVKEDDDEPTDTTAELFLEIP
Ga0190268_119691302	3300018466	Soil	RLQGPVSDRLGGGPFEQRELRGADAFTMNVTPELEPSYAVSKGAVVASTASSGLEQLRPARSPATAAAVLEDLMPEEGEKVEALAFIDPRKLLALGERTGLRALSSPAARDDLSRMRNAGAVVKEDDNEPTDTTAELFLEIP
Ga0190270_123121181	3300018469	Soil	STASSGLEQLGPARSPVTGASVLKDLMPEEGEKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIGAAGVVVSEDANEPTDTTAELFLEIP
Ga0190274_130216081	3300018476	Soil	APLDGEAALTVTAGEAAPVITLAARTRDQASTRESLARLQGPVSEWLGGGPFAQKELRGTDTFTLSVTPELEPSYAVSKDAVVASTARSGLEQLGPARSPVTGASVLKDLMPEEGQKVEALGFLDPRQLLALGERTGLKALSSPTARDDLGRIRAIGAVVKEDANQSTDTTAELFLEIP
Ga0190271_136925931	3300018481	Soil	DDEAALTVSSGEAAPVFTLAARTSDRASTRESLARLQGPVSEWLGGGAFAQKELRGTDAFTLGVTPELEPSYAVSKDAVVASTASSGLEQLGTARSPVTEASPLKDLVGEEGEKVEALGFLDPRQLLALGERTGLKALSSPTARDDLGRIRAVGAVVKEDANQPADTTAE
Ga0193598_10358621	3300018910	Soil	MVPAVTGGSPFTERDVAGANAFSLNVTPQLQPSYAVAKGALVASTAGARLGQLSAARAPVTGESALRQVMPSEDDKVEALGFLDPRQLLELGERTGLQAVSSPAMRDDLRRIRAAGAVVEEDANTSSDTTAELFLEIP
Ga0190273_111602912	3300018920	Soil	GPFTQSQVRGADAFSLRATPQLAPSYAVSKGTVVASTATSGLEQLGKARSPVTGASVLEDLLPEEGEKVEALGFLDSRQLLALGERTGLRALSSPAARDDLGRIRTAGAVVKEDATQPTDTTAELFLEIP
Ga0184644_10989361	3300019269	Groundwater Sediment	ELQPSYAVSKDALVASTASSGLEQLGPARSSVTGASVLKDLMPEEGQKVEALGFLDPRQLLALGERTGLKALSSPTARDDLGRIRAAGAVVKEDANQPTDTTAELFLEIP
Ga0190267_116440581	3300019767	Soil	EPSYAVSKGTVVASTASSGLEQLRPARSPATASPALEELVPEEGAKVEALVFLDPRQLLTLGDRTGLEALTTPAVRDDLGRMGKAGAVVKEDDNEPTDTTAELFLEIP
Ga0206354_103188921	3300020081	Corn, Switchgrass And Miscanthus Rhizosphere	SYAVSKGAVVASTASSGLEQLRTARSPATASSALKELAPEEDQKVEALVLLDPRLLLTLGDRTGLRALTTPAVRDDLGRMGKAGAVVKEDDNQPTDTTAELFLEIP
Ga0196958_101241321	3300020181	Soil	SYGIKESTVVASTGPSGLAQLGAARASVTDSAALAEVMPDEDARVEALGFLDPRQLLALGERTGLRAIGSPAVRDDLSRIRAAGVVVEEDATHPDTTAELFLEIP
Ga0196959_100883391	3300021184	Soil	TLRVTPELEPSYAVAKDAAVASTAGSGLEQLGDAGDPVTKDSSFGEVMPEGGEKVEALAFIDPRALLALGERTGLSALTSPAARDDLGRMGNAGAVVREDDNQPTDTTAELFLEIP
Ga0222624_10113471	3300021951	Groundwater Sediment	RESLARLQGPVSERLGGGPFVQKELRGTDTFTLSVTPELEPSYAVSKDVVVASTASSGLEQLSPARSPVTGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIGAAGVVVKEDANEPTDTTAELFLEIP
Ga0247773_12130352	3300023269	Plant Litter	GPVSARLGGGPFEQRELRGGDAFTLQVTPELAPSYSVTKDAVVASTAGSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGRQAFGSPAARDDLGRIRAAGLVVKEDVNQSTDTTAELFLEIP
Ga0207682_102188172	3300025893	Miscanthus Rhizosphere	GETAPVVTLAAGTSDEASTRESMARLQGVVSSRLGAGPFTHRELRGADAFSLRVTPELEPSYAVSKSTVVASTAGSGLDQLRPARSPATAAPVLEELMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDANQPTDTTAELFLEIP
Ga0207657_105766422	3300025919	Corn Rhizosphere	EAVLTVQAGEAAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFEQRELHGADAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLPVLVSPAVRDDLRRIRAAGGVVQEDADHPTDTTAELFLEIP
Ga0207681_103169751	3300025923	Switchgrass Rhizosphere	APRGEEAVLTVQAGEAAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFEQRELRGGDAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARNPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDANQPTDTTAELFLEIP
Ga0207687_104541641	3300025927	Miscanthus Rhizosphere	ERAGAGPLISGLENSLPAAAGIELEDLLAPLGEQAVISLREGETAPVVTLAAGTSDEASTRESMARLQGVVSSRLGAGPFTHRELRGADAFSLRVTPELEPSYAVSKSTVVASTAGSGLDQLRPARSPATAAPVLEELMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP
Ga0207712_103043782	3300025961	Switchgrass Rhizosphere	RLGGGPFQQRELRGGDAFTLQVTPELAPSYSVTKDAVVASTAGSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP
Ga0207639_119614541	3300026041	Corn Rhizosphere	EASTRESMARLQGVVSSRLGAGPFTHRELRGADAFSLRVTPELEPSYAVSKSTVVASTAGSGLDQLRPARSPATAAPVLEELMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDANQPTDTTAELFLEIP
Ga0247818_106349021	3300028589	Soil	ARRELRGGDAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP
Ga0247823_110170641	3300028590	Soil	DVLAPLGEEAVLTVQAGEAAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFEQRELRGGDAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP
Ga0247821_104998481	3300028596	Soil	GPVSEHLGAGPFTQKELHGTDAFTLGVTPELEPSYAVSKDTLVASTASSGLEQLGRPRSAVTGASVLKDLMPEQGQKVEALGFLDPRQLLALGERTGLKALSSPAARDDLGRIRAAGAVVKEDANQPTDTTAELFLQIP
Ga0247820_108581552	3300028597	Soil	VSEQLGAGPFTQKELHGTDAFTLGVTPELEPSYAVSKDTLVASTASSGLEQLGRPRSAVTGASVLKDLMPEQGQKVEALGFLDPRQLLALGERTGLKALSSPAARDDLGRIRAAGAVVKEDANQPTDTTAELFLQIP
Ga0307322_101939472	3300028710	Soil	EASTRESLARLQGPAADWLGGGPFAQRELHGADAFTLRVTPELEPSYAVSKGVAVASTASSGLEQLSPARSPVTGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIGAAGVVVKEDANEPTDTTAELFLEIP
Ga0307311_101020802	3300028716	Soil	LEQLSPARSPVTGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIRTAGAVVKEDANQPTDTTAELFLEIP
Ga0307301_101789691	3300028719	Soil	FAQRELRGADAFTLRVTPELEPSYAVSKGVAVASTASSGLEQLSPARSPVTGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIGAAGVVVKEDANEPTDTTAELFLEIP
Ga0307284_102556141	3300028799	Soil	EAQLTVTGAADAPIFTVAARTRDEAATREDMAQLQGPIGDRLAGGAPFTQFEQGGTPAFALPVTDRLEPTYAVAHGAVVASTARSGLAQLGDAKTPVTKAEALKQVMPGEGAKVEALGFLDSRQLLALAERTGLGALSSPAVRDDLGRIRAAGAVVEEDGDHPTDTTAELFLQIP
Ga0307294_100829001	3300028810	Soil	LPQAAGIELDDLIAPLDGEAALTVTAGEAAPVFTLAARTRDQASTRESLARLQGPVSEWLGGGPFAQKEVRGTDAFTLSVTPELEPSYAVSKGVAVASTASSGLEQLSPARSPVTGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIGAAGVVVKEDANEPTDTTAELFLEIP
Ga0247825_103103741	3300028812	Soil	GIEDALPAAAGVELDDVLAPLGEEAVLTVQAGEAAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFQQRELRGGDAFTLQVTPELAPSYSVAKDAVVASTAGSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP
Ga0307310_106602892	3300028824	Soil	VTDRLEPTYAVAHGAVVASTARSGLAQLGDAKTPVTKAEALKQVMPGEDAKVEALGFLDSRQLLALAERTGLGALSSPAVRDDLGRIRAAGAVVEEDGDHPTDTTAELFLQIP
Ga0307289_103762932	3300028875	Soil	PVSERLGGGPFVQKELRGTDNFTLSVTPELEPSYAVSKGVAVASTASSGLEQLSPARSPVTGASVLEDLMPEEGAKVEALGFLDPRQLLALGERTGLRALSSPAARDDLGRIGAAGVVVKEDANEPTDTTAELFLEIP
Ga0307277_105459721	3300028881	Soil	RDVLGTREGLARLQRPISERLAGGDPFTQFDHHGTPAFALPVTPQLEPAYGISHGTVVASTARSGLDQLGDAKDPATAAGALKELMPEDGAKVEALGFLDSRQLLALAERTGLEALSSPAVRDDLGRIRSAGAVVEEDGDHSNDTTAELFLQIP
Ga0247826_101332362	3300030336	Soil	VGERAGGASVLEGLENALPSAAGLELADLIAPLDGEAALTVTAGEAAPVFTLAARTRDQASTRESMARLQGPVSEQLGAGPFTQKELHGTDAFTLGVTPELEPSYAVSKDTLVASTASSGLEQLGRPRSAVTGASVLKDLMPEQGQKVEALGFLDPRQLLALGERTGLKALSSPAARDDLGRIRAAGAVVKEDANQPTDTTAELFLQIP
Ga0247826_101477182	3300030336	Soil	QRELRGGDAFTLQVTPELAPSYSVTKDAVVASTASSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLRAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP
Ga0268258_101199151	3300030502	Agave	AGEAAPIFTLASRTRDEASTRESLARLQGPVSDRLGGGPFEQRELRGADAFTLRVTPELEPSYAVSKGTVVVSTAASGLDQLRPARSPATTWPVVEDQLPDWEGEKVEALVFLDPRQLLTLGERTGLRALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP
Ga0308189_103577082	3300031058	Soil	SYAVSKDAVVASTAASGLEQLGPARSPVTGASVLKDLMPEEGQKVEALGFLDPRQLLALGERTGLKALSSPAARDDLGRIRAAGAVVKEDANQPTDTTAELFLEIP
Ga0308201_102798561	3300031091	Soil	AVSKDAVVASTAASGLEQLGPARSPVTGASVLKDLMPEEGQKVEALGFLDPRQLLALGERTGLKALSSPAARDDLGRIRAAGAVVKEDANQPTDTTAELFLEIP
Ga0308201_103588121	3300031091	Soil	VASTASSGLEQLGAAKDPVTENPSIGEVVSDEGGKVEALGFLDSRQLLALGERTGLRALSSPAARDDLGRIGAAGVVVKEDANEPTDTTAELFLEIP
Ga0299913_101614291	3300031229	Soil	RAGGAALLTGLEEALPAAAGIELEDLLAPLGDEAVLSVQAGGAAPIFTVASRTRDEASTRESLARLQGPVSDRLDGGPFQQRELRGADTFTLQVTPELEPSYAVSKGAVVVSTASSGLDQLRPAKSPVTTWPVVEDQLPDWEDGKVEALVFLDPRQLLTLGERTGLSALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP
Ga0307410_109514501	3300031852	Rhizosphere	PFEQRELRGADAFTLQVTPELEPSYAVSKDAVVASTAGSGLEQLRPARSPATASPALEELVPEEGQKVEALVFLDPRQLLTLGDRTGLQALTTPAVRDDLGRMGKAGAVVKEDDDEPTDTTAELFLEIP
Ga0307409_1017021622	3300031995	Rhizosphere	PELEPSYAVSKDTAVASTAASGLEQLGPARSPVTGASVLKDLVPEEGQKVEALGFLDPRQLLALGERTGLKALSSPAARDDLGRIRAAGAVVKEDADDPTDTTAELFLEIP
Ga0308176_116861472	3300031996	Soil	EAALTVEAGEAAPIFTLAARTRDEASTRESLAQVQGPVSAQLGAGPFEQRELRGTDAFTLRVTPELEPSYALAKGAVVASTAESGLEQLGPAKSPVTGSPMFEDHMPGEGEKVEALVFLDPRQLLTLGERTGLRALSSPAARDDLGKIGKAGAFVKEDDNSPTDTTAELFLEIP
Ga0307414_118461251	3300032004	Rhizosphere	LLAGLEEALPTAAGIELEDLLAPVSDEAVLAVQAGETAPILTIAARTRDAASTRESLARLQGPVSDRLGGGPFERRELRGADAFTLQVTPELEPSYAVSKDTAVASTAASGLEQLGPARSPVTGASVLKDLVPEEGQKVEALGFLDPRQLLALGERTGLKALSSPAARDDLGRIRAAGAVVKEDADE
Ga0326721_104068642	3300032080	Soil	ARLQGPLSERFGGGPFTQSRVRGADAFSLRATPQLEPSYAIAKGAVVASTAASGLEQLAPARSPVTGAPALEDLMPDEGEKVEALGFLDSRQLLALGERTGLRALSSPAARDDLGRIRTAGAVVKEDATQPTDTTAELFLEIP
Ga0326721_108480962	3300032080	Soil	PELEPSYAVSKGAVVVSTAASGMDQLRPARSPATTWPVVEDQLPDWEDGKVEALVFLDPRQLLTLGERTGLKALTSPAARDDLGRIGKAGVVVKEDDDEPTDTTAELFLEIP
Ga0307415_1012247072	3300032126	Rhizosphere	TPELEPSYAVSKDTAVASTAASGLEQLGPARSPVTGASVLKDLVPEEGQKVEALGFLDPRQLLALGERTGLKALSSPAARDDLGRIRAAGAVVKEDADDPTDTTAELFLEIP
Ga0247829_104178872	3300033550	Soil	ERAAAGVELEDVLAPLGEEAVLTVQAGESAPVFTLAARTRDAASTRESLARLQGPVSARLGGGPFEQRELRGGDAFTLQVTPELAPSYSVTKDAVVASTAGSGLEQLRPARTPATGASVLEDLMPEEGEKVEALGFLDPRQLLALGERTGLQAFGSPAARDDLGRIRAAGLVVKEDVNQPTDTTAELFLEIP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F073992

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences