Metagenome Family F074254

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074254
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	55 residues
Representative Sequence	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDI
Number of Associated Samples	72
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	94.12 %
% of genes near scaffold ends (potentially truncated)	94.12 %
% of genes from short scaffolds (< 2000 bps)	81.51 %
Associated GOLD sequencing projects	65
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (54.622 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.135 % of family members)
Environment Ontology (ENVO)	Unclassified (63.866 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (57.143 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 59.26% β-sheet: 5.56% Coil/Unstructured: 35.19%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF13676	TIR_2	5.04
PF00072	Response_reg	3.36
PF02738	MoCoBD_1	3.36
PF07758	DUF1614	2.52
PF00171	Aldedh	2.52
PF00199	Catalase	1.68
PF00248	Aldo_ket_red	1.68
PF12006	DUF3500	1.68
PF01464	SLT	1.68
PF03401	TctC	0.84
PF01979	Amidohydro_1	0.84
PF09917	DUF2147	0.84
PF06742	DUF1214	0.84
PF02705	K_trans	0.84
PF07045	DUF1330	0.84
PF03473	MOSC	0.84
PF06912	DUF1275	0.84
PF03435	Sacchrp_dh_NADP	0.84
PF13431	TPR_17	0.84
PF00005	ABC_tran	0.84
PF01497	Peripla_BP_2	0.84
PF13460	NAD_binding_10	0.84
PF01381	HTH_3	0.84
PF01272	GreA_GreB	0.84
PF00916	Sulfate_transp	0.84
PF07676	PD40	0.84
PF13751	DDE_Tnp_1_6	0.84
PF02735	Ku	0.84
PF09140	MipZ	0.84
PF00753	Lactamase_B	0.84
PF08241	Methyltransf_11	0.84
PF13531	SBP_bac_11	0.84
PF08447	PAS_3	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0014	Gamma-glutamyl phosphate reductase	Amino acid transport and metabolism [E]	2.52
COG1012	Acyl-CoA reductase or other NAD-dependent aldehyde dehydrogenase	Lipid transport and metabolism [I]	2.52
COG4089	Uncharacterized membrane protein	Function unknown [S]	2.52
COG4230	Delta 1-pyrroline-5-carboxylate dehydrogenase	Amino acid transport and metabolism [E]	2.52
COG0753	Catalase	Inorganic ion transport and metabolism [P]	1.68
COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.84
COG0659	Sulfate permease or related transporter, MFS superfamily	Inorganic ion transport and metabolism [P]	0.84
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.84
COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	Cell cycle control, cell division, chromosome partitioning [D]	0.84
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.84
COG2233	Xanthine/uracil permease	Nucleotide transport and metabolism [F]	0.84
COG2252	Xanthine/guanine/uracil/vitamin C permease GhxP/GhxQ, nucleobase:cation symporter 2 ( NCS2) family	Nucleotide transport and metabolism [F]	0.84
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.84
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.84
COG3619	Uncharacterized membrane protein YoaK, UPF0700 family	Function unknown [S]	0.84
COG4558	ABC-type hemin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.84
COG4592	ABC-type Fe2+-enterobactin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.84
COG4594	ABC-type Fe3+-citrate transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.84
COG4607	ABC-type enterochelin transport system, periplasmic component	Inorganic ion transport and metabolism [P]	0.84
COG5361	Uncharacterized conserved protein	Mobilome: prophages, transposons [X]	0.84
COG5402	Uncharacterized protein, contains DUF1214 domain	Function unknown [S]	0.84
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.46 %
Unclassified	root	N/A	44.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.46 %
Unclassified	root	N/A	44.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	54.62 %
Unclassified	root	N/A	44.54 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	42.86 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.97 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %
Alveolata	clade	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	21.85 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.04 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	4.20 %
Dinophyceae	class	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae	0.84 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	7.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.04 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	3.36 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	1.68 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	0.84 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.84 %
Suessiales	order	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7.56 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.04 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	2.52 %
Microvirga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga	1.68 %
Symbiodiniaceae	family	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae	0.84 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	0.84 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.84 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.04 %
Bradyrhizobium vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	3.36 %
Rhodoplanes roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	1.68 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.68 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	1.68 %
unclassified Hyphomicrobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium	0.84 %
unclassified Rhodoplanes	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes	0.84 %
Symbiodinium	genus	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium	0.84 %
Azospirillum lipoferum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum lipoferum	0.84 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.04 %
Bradyrhizobium vignae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	3.36 %
Rhodoplanes roseus	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	1.68 %
Microvirga lotononidis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	1.68 %
Bradyrhizobium sp. STM 3843	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	0.84 %
Rhodoplanes sp. Z2-YC6860	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	0.84 %
Hyphomicrobium sp. MC1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. MC1	0.84 %
Bradyrhizobium sp. Ec3.3	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	0.84 %
Symbiodinium pilosum	species	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	0.84 %
Azospirillum lipoferum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum lipoferum	0.84 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005332\|Ga0066388_100936516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1439	Open in IMG/M
3300005332\|Ga0066388_104704437	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	694	Open in IMG/M
3300005332\|Ga0066388_105436078	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	646	Open in IMG/M
3300005332\|Ga0066388_107266918	Not Available	556	Open in IMG/M
3300005560\|Ga0066670_10035138	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2486	Open in IMG/M
3300005764\|Ga0066903_100919306	All Organisms → cellular organisms → Bacteria → Proteobacteria	1586	Open in IMG/M
3300005764\|Ga0066903_101317440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1350	Open in IMG/M
3300005764\|Ga0066903_102052445	Not Available	1099	Open in IMG/M
3300005764\|Ga0066903_103008027	Not Available	913	Open in IMG/M
3300005764\|Ga0066903_106858532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum → Azospirillum lipoferum	591	Open in IMG/M
3300005764\|Ga0066903_107922068	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. STM 3843	545	Open in IMG/M
3300005764\|Ga0066903_108663874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	517	Open in IMG/M
3300010043\|Ga0126380_10933004	All Organisms → cellular organisms → Bacteria	724	Open in IMG/M
3300010048\|Ga0126373_10059356	All Organisms → cellular organisms → Bacteria → Proteobacteria	3425	Open in IMG/M
3300010048\|Ga0126373_10386765	Not Available	1420	Open in IMG/M
3300010048\|Ga0126373_12626250	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300010162\|Ga0131853_10487776	All Organisms → cellular organisms → Bacteria	1121	Open in IMG/M
3300010303\|Ga0134082_10088397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1218	Open in IMG/M
3300010321\|Ga0134067_10214331	All Organisms → cellular organisms → Bacteria → Proteobacteria	712	Open in IMG/M
3300010358\|Ga0126370_12628360	Not Available	504	Open in IMG/M
3300010398\|Ga0126383_11749339	Not Available	710	Open in IMG/M
3300012948\|Ga0126375_11766375	Not Available	539	Open in IMG/M
3300012971\|Ga0126369_10865566	All Organisms → cellular organisms → Bacteria	988	Open in IMG/M
3300016294\|Ga0182041_10406797	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1159	Open in IMG/M
3300016294\|Ga0182041_11308437	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300016319\|Ga0182033_10119203	Not Available	1981	Open in IMG/M
3300016319\|Ga0182033_11441949	Not Available	620	Open in IMG/M
3300016357\|Ga0182032_10028819	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3357	Open in IMG/M
3300016357\|Ga0182032_10104496	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2007	Open in IMG/M
3300016357\|Ga0182032_10253656	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1369	Open in IMG/M
3300016357\|Ga0182032_11117676	Not Available	676	Open in IMG/M
3300016387\|Ga0182040_11024109	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300016404\|Ga0182037_11879220	Not Available	536	Open in IMG/M
3300016422\|Ga0182039_10779984	Not Available	847	Open in IMG/M
3300016445\|Ga0182038_10256761	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. Ec3.3	1408	Open in IMG/M
3300017822\|Ga0187802_10018844	All Organisms → cellular organisms → Bacteria → Proteobacteria	2349	Open in IMG/M
3300017822\|Ga0187802_10188182	All Organisms → cellular organisms → Bacteria	792	Open in IMG/M
3300017924\|Ga0187820_1174279	Not Available	659	Open in IMG/M
3300017924\|Ga0187820_1285853	Not Available	539	Open in IMG/M
3300017970\|Ga0187783_10340673	Not Available	1092	Open in IMG/M
3300017970\|Ga0187783_10408091	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	987	Open in IMG/M
3300017973\|Ga0187780_10865414	Not Available	655	Open in IMG/M
3300017974\|Ga0187777_10138859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1617	Open in IMG/M
3300017994\|Ga0187822_10278762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	583	Open in IMG/M
3300017995\|Ga0187816_10172307	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC6860	939	Open in IMG/M
3300018058\|Ga0187766_10038497	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2792	Open in IMG/M
3300018058\|Ga0187766_10198602	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1266	Open in IMG/M
3300018085\|Ga0187772_10053030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2497	Open in IMG/M
3300018431\|Ga0066655_11291741	All Organisms → cellular organisms → Bacteria → Proteobacteria	523	Open in IMG/M
3300021420\|Ga0210394_10332117	Not Available	1335	Open in IMG/M
3300021560\|Ga0126371_12658037	Not Available	607	Open in IMG/M
3300021560\|Ga0126371_12981757	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	573	Open in IMG/M
3300027703\|Ga0207862_1179333	Not Available	631	Open in IMG/M
3300031128\|Ga0170823_16478707	Not Available	563	Open in IMG/M
3300031544\|Ga0318534_10142502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	1382	Open in IMG/M
3300031544\|Ga0318534_10277783	Not Available	965	Open in IMG/M
3300031545\|Ga0318541_10620737	Not Available	604	Open in IMG/M
3300031546\|Ga0318538_10297184	Not Available	870	Open in IMG/M
3300031546\|Ga0318538_10752333	Not Available	529	Open in IMG/M
3300031561\|Ga0318528_10003568	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6465	Open in IMG/M
3300031573\|Ga0310915_11269122	Not Available	508	Open in IMG/M
3300031668\|Ga0318542_10578879	Not Available	585	Open in IMG/M
3300031679\|Ga0318561_10025820	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2786	Open in IMG/M
3300031719\|Ga0306917_10875082	Not Available	703	Open in IMG/M
3300031744\|Ga0306918_10532190	Not Available	920	Open in IMG/M
3300031744\|Ga0306918_11316600	Not Available	555	Open in IMG/M
3300031753\|Ga0307477_10458619	All Organisms → cellular organisms → Bacteria	869	Open in IMG/M
3300031763\|Ga0318537_10026214	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → unclassified Hyphomicrobium → Hyphomicrobium sp. MC1	2054	Open in IMG/M
3300031765\|Ga0318554_10182772	All Organisms → cellular organisms → Bacteria → Proteobacteria	1193	Open in IMG/M
3300031770\|Ga0318521_10963454	Not Available	522	Open in IMG/M
3300031779\|Ga0318566_10411062	Not Available	666	Open in IMG/M
3300031780\|Ga0318508_1000559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	5866	Open in IMG/M
3300031792\|Ga0318529_10316388	Not Available	726	Open in IMG/M
3300031792\|Ga0318529_10512698	All Organisms → cellular organisms → Eukaryota → Sar → Alveolata → Dinophyceae → Suessiales → Symbiodiniaceae → Symbiodinium → Symbiodinium pilosum	557	Open in IMG/M
3300031805\|Ga0318497_10025030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	2938	Open in IMG/M
3300031833\|Ga0310917_10586188	Not Available	757	Open in IMG/M
3300031833\|Ga0310917_10991402	Not Available	563	Open in IMG/M
3300031879\|Ga0306919_10591213	All Organisms → cellular organisms → Bacteria	856	Open in IMG/M
3300031879\|Ga0306919_11488345	Not Available	510	Open in IMG/M
3300031890\|Ga0306925_10466931	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1347	Open in IMG/M
3300031890\|Ga0306925_11415835	Not Available	685	Open in IMG/M
3300031890\|Ga0306925_11592508	Not Available	635	Open in IMG/M
3300031890\|Ga0306925_12040730	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	539	Open in IMG/M
3300031893\|Ga0318536_10022114	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2899	Open in IMG/M
3300031896\|Ga0318551_10001097	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	9084	Open in IMG/M
3300031910\|Ga0306923_10182852	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2395	Open in IMG/M
3300031910\|Ga0306923_11813309	Not Available	626	Open in IMG/M
3300031912\|Ga0306921_11335993	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	791	Open in IMG/M
3300031912\|Ga0306921_12083937	Not Available	601	Open in IMG/M
3300031942\|Ga0310916_10678991	Not Available	872	Open in IMG/M
3300031942\|Ga0310916_11435157	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300031945\|Ga0310913_10690376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	722	Open in IMG/M
3300031945\|Ga0310913_11033411	Not Available	575	Open in IMG/M
3300031945\|Ga0310913_11061023	Not Available	567	Open in IMG/M
3300031946\|Ga0310910_10508591	Not Available	956	Open in IMG/M
3300031946\|Ga0310910_10652501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Microvirga → Microvirga lotononidis	833	Open in IMG/M
3300031946\|Ga0310910_10711250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	794	Open in IMG/M
3300031946\|Ga0310910_10733317	Not Available	780	Open in IMG/M
3300031954\|Ga0306926_10069224	All Organisms → cellular organisms → Bacteria	4267	Open in IMG/M
3300031954\|Ga0306926_10280079	All Organisms → cellular organisms → Bacteria	2065	Open in IMG/M
3300031954\|Ga0306926_12337636	Not Available	591	Open in IMG/M
3300032001\|Ga0306922_12056386	Not Available	555	Open in IMG/M
3300032043\|Ga0318556_10028762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium vignae	2566	Open in IMG/M
3300032052\|Ga0318506_10016726	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2603	Open in IMG/M
3300032059\|Ga0318533_10654588	All Organisms → cellular organisms → Bacteria	771	Open in IMG/M
3300032059\|Ga0318533_11259593	Not Available	541	Open in IMG/M
3300032065\|Ga0318513_10080845	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes roseus	1500	Open in IMG/M
3300032076\|Ga0306924_10530202	All Organisms → cellular organisms → Bacteria	1338	Open in IMG/M
3300032091\|Ga0318577_10002463	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6416	Open in IMG/M
3300032094\|Ga0318540_10454851	Not Available	618	Open in IMG/M
3300032094\|Ga0318540_10617670	Not Available	522	Open in IMG/M
3300032261\|Ga0306920_100153197	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3435	Open in IMG/M
3300032261\|Ga0306920_102686827	Not Available	680	Open in IMG/M
3300032261\|Ga0306920_102975079	Not Available	640	Open in IMG/M
3300032261\|Ga0306920_103187629	Not Available	614	Open in IMG/M
3300033289\|Ga0310914_10578643	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1013	Open in IMG/M
3300033289\|Ga0310914_11570655	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	561	Open in IMG/M
3300033290\|Ga0318519_10001411	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	7580	Open in IMG/M
3300033290\|Ga0318519_11053010	Not Available	506	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.16%
Host-Associated	Host-Associated	0.84%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.12%
Aquatic	Environmental → Aquatic	5.04%
Arthropoda	Host-Associated → Arthropoda	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.12%
Freshwater	Environmental → Aquatic → Freshwater	5.04%
Digestive System	Host-Associated → Arthropoda → Digestive System	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	78.15%
Loam	Environmental → Terrestrial → Soil → Loam	10.08%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	5.88%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	5.04%
Gut	Host-Associated → Arthropoda → Digestive System → Gut	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	66.39%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.08%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.08%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	5.88%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.04%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.68%
Unclassified	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	28.57%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.08%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.40%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.88%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	1.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.84%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.84%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.84%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.84%
Termite Gut	Host-Associated → Arthropoda → Digestive System → Gut → Unclassified → Termite Gut	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010162	Labiotermes labralis P1 segment gut microbial communities from Petit-Saut dam, French Guiana - Lab288 P1 (version 2)	Host-Associated	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010321	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09212015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017924	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_5	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017973	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017994	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_2	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018431	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_104	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300031128	Oak Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031792	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032043	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f24	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066388_1009365163	3300005332	Tropical Forest Soil	MCAGTSRIMRVVRLMDEPDWQSRVSPIEEIFFATSPSAKTLRPDERQ
Ga0066388_1047044372	3300005332	Tropical Forest Soil	MRVVRLIDEPDWQSRLWPIEEIFFGTSPSAKTLRPDERQPFKERWLGRY
Ga0066388_1054360781	3300005332	Tropical Forest Soil	MRVVRLMDEPDWQCRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRY
Ga0066388_1072669182	3300005332	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATNPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEVST
Ga0066670_100351385	3300005560	Soil	MRVVRLLDEPDWQSRLLRIEEIFFATSPSAKTLQPDECPP
Ga0066903_1009193063	3300005764	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRQDQRQ
Ga0066903_1013174403	3300005764	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFVTSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEVSTV
Ga0066903_1020524455	3300005764	Tropical Forest Soil	MCAGTSRIMRVVRLMDEPDWQSRVSPIEEIFFATSPSAKTLR
Ga0066903_1030080272	3300005764	Tropical Forest Soil	MCAGTSRIMRVVRLMDEPDWQSRVSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIENFFVAI
Ga0066903_1068585321	3300005764	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIENFFVA
Ga0066903_1079220682	3300005764	Tropical Forest Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLRPDERQSFKERWLGRYIAYDIES
Ga0066903_1086638741	3300005764	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRLDERQPFKERWLGRYIAYDI
Ga0126380_109330042	3300010043	Tropical Forest Soil	MRVVRLIDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFK
Ga0126373_100593561	3300010048	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEISFPTSPSAKTLPTDARQPIK
Ga0126373_103867651	3300010048	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRLDERQPFKERWLGRYIAYDIESFFVAITEVST
Ga0126373_126262501	3300010048	Tropical Forest Soil	MTVSPDDARSFIMRVVRLMDEPDWQSLLSPIEEIFFATSPSAKTLRP
Ga0131853_104877761	3300010162	Termite Gut	MRVVRLIDEPDWQSRLSPIEELFFATSPSAKTLRPDERPPFKERWLGRYIACDIESFFVA
Ga0134082_100883973	3300010303	Grasslands Soil	MRVVRLLDEPDWQSRLSPIEEIFFATSPSAKTLQPDECPPFKERWLGRYISE*
Ga0134067_102143311	3300010321	Grasslands Soil	MRVVRLLDEPDRQSRLSPIEEIFFATSPSAKTLQPDECPPFKERWLGRYISE*
Ga0126370_126283601	3300010358	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEVSTVAGY
Ga0126383_117493392	3300010398	Tropical Forest Soil	MDQPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFV
Ga0126375_117663751	3300012948	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFTTSPSAKTLRLDERQPFKERWLGRYIAYDIESFFVAITEVSTVAGY
Ga0126369_108655661	3300012971	Tropical Forest Soil	MRVVRLMDELDWQSRLSAIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVA
Ga0182041_104067971	3300016294	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQ
Ga0182041_113084372	3300016294	Soil	MCAGTSRIMRVVRLIDEPDWQSRVSPIEEIFFATSPSAKTLPPDERQPLKERWLGRYIAYDIENFFV
Ga0182033_101192031	3300016319	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRY
Ga0182033_114419491	3300016319	Soil	MRVIRLMDEPNWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWL
Ga0182032_100288199	3300016357	Soil	MRVVRLMDELDWQSRLSPIVEIFFATSPSAKTLRPHEREPFKERWLGRYIAYDIES
Ga0182032_101044961	3300016357	Soil	MDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGR
Ga0182032_102536561	3300016357	Soil	MRVVRLMDEPDWQSLLSPIEQIFFATSPSAKTLRPDERQPF
Ga0182032_111176762	3300016357	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAY
Ga0182040_110241092	3300016387	Soil	MRVVRLMDQPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYITYDIESFFVAITEVST
Ga0182037_118792201	3300016404	Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWL
Ga0182039_107799842	3300016422	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAETLRPDE
Ga0182038_102567613	3300016445	Soil	MCAGTSRIMRVVRLIDEPDWQSRVSPIEEIFFATSPSAKTLRPDERQPFKERSLGRYIAYDIENFFVAITEISTVAGYLA
Ga0187802_100188441	3300017822	Freshwater Sediment	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPD
Ga0187802_101881823	3300017822	Freshwater Sediment	MRVVRLIIEPDWKSLLSPIEEIFFATSPSAKTLRPDERLPFKERWLGRYIA
Ga0187820_11742792	3300017924	Freshwater Sediment	MRVVRLMDEPDWQSRLSPIEEIFCATSQSAKSLRPDHRQPSKERWLWPYIVYDSESFCVA
Ga0187820_12858532	3300017924	Freshwater Sediment	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVA
Ga0187783_103406732	3300017970	Tropical Peatland	MRVVRLMDEPDWQSRLSPIEIFLATSPSAKTLRPDERQPFKERYIAYDIESFFVAITEVIIASGLNA
Ga0187783_104080913	3300017970	Tropical Peatland	MRVVRLMDEPDWQSCLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITE
Ga0187780_108654142	3300017973	Tropical Peatland	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKNLRPDERQPFKERWLGRY
Ga0187777_101388593	3300017974	Tropical Peatland	MRVVRLMDEPDWQSCLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIA
Ga0187822_102787622	3300017994	Freshwater Sediment	MSFIMRVVGLMDEPDWQSQLSPIEEIFLATSPSAKTLRPDER
Ga0187816_101723071	3300017995	Freshwater Sediment	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQRFKERWLGRYIAYDIETFFVA
Ga0187766_100384971	3300018058	Tropical Peatland	MDEPDWQSRLSPIEEIFFATSPSAKTLQPDERQPFKERWLGRYIAYDIESFF
Ga0187766_101986021	3300018058	Tropical Peatland	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRADERQPFKERWLGRYMAYDIESFFVAITEVSTVA
Ga0187772_100530301	3300018085	Tropical Peatland	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRADERQPFKERWLGRYMAYDIESFFVAITEV
Ga0066655_112917411	3300018431	Grasslands Soil	MRVVRLLDEPDWQSRLLRIEEIFFATSPSAKTLQPDECPPFKERWLGRYISE
Ga0210394_103321172	3300021420	Soil	MRVVRLMDEPDWQARLSPIEEIFFATSPSAKTLRPAERQPFKERWLGRYIAYDIESFFVAIT
Ga0126371_126580371	3300021560	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEVSTVA
Ga0126371_129817571	3300021560	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKE
Ga0207862_11793333	3300027703	Tropical Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLQPDERQPFKERWLGRYIAYDIESFFVAITEIS
Ga0170823_164787071	3300031128	Forest Soil	MRVVRLMDEPDWQSLLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEVSTVAGYL
Ga0318534_101425022	3300031544	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLE
Ga0318534_102777832	3300031544	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYI
Ga0318541_106207372	3300031545	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYD
Ga0318538_102971841	3300031546	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPHEREPFK
Ga0318538_107523332	3300031546	Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLRPEERQPFKERWLGRYIAYDIESFFIAITEVST
Ga0318528_100035681	3300031561	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEVSTVAGYLA
Ga0310915_112691222	3300031573	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRADERQPFKERWLGRYL
Ga0318542_105788791	3300031668	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDSES
Ga0318561_100258205	3300031679	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDER
Ga0306917_108750821	3300031719	Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLRPEERQPFKERWLGRYIAYDIESFFIAITEVSTVA
Ga0306918_105321901	3300031744	Soil	MRVVRLMDQPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKER
Ga0306918_113166001	3300031744	Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLPSDERQPFKERWLGRYIAYDIESF
Ga0307477_104586192	3300031753	Hardwood Forest Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPAERRPFKERWLGRYIAYDIESFFVAITEVST
Ga0318537_100262143	3300031763	Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLRPEEHQP
Ga0318554_101827721	3300031765	Soil	MRVIRLMDEPDWQSRLSPIEEIFFATSPSTKTLRPDERPTFKERWLGRYI
Ga0318521_109634541	3300031770	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERW
Ga0318566_104110622	3300031779	Soil	MRVVRLMDEPDWQSRLPPIEEIFFATSPSAKTLRPDERGPLQ
Ga0318508_10005591	3300031780	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLERYIAYDIESFFVAIT
Ga0318529_103163881	3300031792	Soil	MRVIRLMDEPDWQSRLSPIEEIFFATSPSTKTLRPDERPTFKERWLGRYIAYDIESFFVAITEVST
Ga0318529_105126981	3300031792	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDSESFFVAITEVS
Ga0318497_100250302	3300031805	Soil	MRVIRLMDEPDWQSRLSPIEEIFFATSPSTKTLRPDERPTFKERWLGRYIAYDIESFFVA
Ga0310917_105861882	3300031833	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDI
Ga0310917_109914021	3300031833	Soil	MRVVRLIDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAY
Ga0306919_105912133	3300031879	Soil	MRVVRLMDQPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLG
Ga0306919_114883451	3300031879	Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLPSDERQPFKERWLGRYIAYDIESFFV
Ga0306925_104669313	3300031890	Soil	MRVVRLMDQPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAIT
Ga0306925_114158352	3300031890	Soil	MRVVRLMDEPGWQSRLPLIEKIFFATSPSAKTLRPNERQPFKERWLGRYLAYDIGSFFVAITEVSTVAGY
Ga0306925_115925081	3300031890	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRLDERQPFKERWLGRYIAY
Ga0306925_120407301	3300031890	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKER
Ga0318536_100221141	3300031893	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLG
Ga0318551_1000109715	3300031896	Soil	MRVIRLMDEPDWQSRLSPIEEIFFATSPSTKTLRPDERPTFKERWLGRYIAYDIESFFVAITEVSTV
Ga0306923_101828521	3300031910	Soil	MRVVRLMDQSDWQSRLAPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAY
Ga0306923_118133091	3300031910	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATGPSAKTLRLGE
Ga0306921_113359931	3300031912	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPHEREPFKERWLGRYIA
Ga0306921_120839371	3300031912	Soil	MRVVRLMDEPGWQSRLPLIEKIFFATSPSAKTLRPNERQPFKERWLGRYLAYDI
Ga0310916_106789912	3300031942	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIES
Ga0310916_114351571	3300031942	Soil	MRVVRLMDQPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYITYDIESFFVAITEVSTVA
Ga0310913_106903761	3300031945	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQP
Ga0310913_110334111	3300031945	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPHEREPFKERWLGRYIAYDIESFFVA
Ga0310913_110610233	3300031945	Soil	MRVVRLMDEPDWQSLLPPIEQIFFATSPSAKTLRPGEC
Ga0310910_105085912	3300031946	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDFESFF
Ga0310910_106525012	3300031946	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPHEREPFKERWLGRYIAYDIESFF
Ga0310910_107112502	3300031946	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFV
Ga0310910_107333171	3300031946	Soil	MRVVRLMDEPGWQSRLPLIEKIFFATSPSAKTLRPNERQPFKERWLGRYLAYDIGSFF
Ga0306926_100692244	3300031954	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERKPFKERWLGRYIAYDIESFFVTITEVSTVAGYLAVLAPL
Ga0306926_102800793	3300031954	Soil	MRVVRLMDQPDWQSRLLPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIE
Ga0306926_123376362	3300031954	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPHEREPFKERWLGRYIAYDIESFFVAITELS
Ga0306922_120563861	3300032001	Soil	MRVVRLMDEPDWQSLLPPIEEIFFATSPSAKTLRPHEREPFKERWLGRYIAYDIESFF
Ga0318556_100287622	3300032043	Soil	MRVIRLMDEPDWQSRLSPIEEIFFATSPSTKTLRPDERPTFKERWLGRYIA
Ga0318506_100167262	3300032052	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERHPFKERWLGRYIAYD
Ga0318533_106545881	3300032059	Soil	MRVVRLMDQSDWQSRLAPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIE
Ga0318533_112595931	3300032059	Soil	MRVVRLMDEPDWQSLLPPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEVS
Ga0318513_100808452	3300032065	Soil	MRVIRLMDEPDWQSRLSPIEEIFFATSPSTKTLRPDERPTFKERWLGRYIAYDI
Ga0306924_105302021	3300032076	Soil	MRVVRLIDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVA
Ga0318577_100024631	3300032091	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEVST
Ga0318540_104548512	3300032094	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWL
Ga0318540_106176702	3300032094	Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLRPEERQPFKERWLGRYIAYD
Ga0306920_1001531971	3300032261	Soil	MRVVRLMDELDWQSRLSPIEEIFFATSPSAKTLRPHEREPFKERWLGRYIAYD
Ga0306920_1026868271	3300032261	Soil	MRVVRLMDEPDWQSLLSPIEQIFFATSPSAKTLRPDERQPFQERWLGRYITYDIESFFVAITEVCAVAG
Ga0306920_1029750792	3300032261	Soil	MRVVRLIDELDWQSRLSPIEELFFATSPSAKSLRPDERQPFKERWLERYIAHDIQSFFVAITEVSSVA
Ga0306920_1031876291	3300032261	Soil	MRVVRLMDEPDWQSLLPPIEEIFFATSPSAKTLRPEERQPFKERWLGRYIAYDIESFFVAVTEV
Ga0310914_105786432	3300033289	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPF
Ga0310914_115706551	3300033289	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGR
Ga0318519_100014111	3300033290	Soil	MRVVRLMDEPDWQSRLSPIEEIFFATSPSAKTLRPDERQPFKERWLGRYIAYDIESFFVAITEV
Ga0318519_110530101	3300033290	Soil	MRVVRLMDEPNWQSRLSPIEEIFFATSPSAKTLRPEERQPFKERWLGRYIA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F074254

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences