Metagenome / Metatranscriptome Family F074256

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074256
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	56 residues
Representative Sequence	VPPSGAIDAWPIWYRLMDLTGAFVSALAPVCAVARLASARRRPRVPAIDAAGADVSH
Number of Associated Samples	69
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	8.55 %
% of genes near scaffold ends (potentially truncated)	44.54 %
% of genes from short scaffolds (< 2000 bps)	95.80 %
Associated GOLD sequencing projects	69
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (81.513 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere (79.832 % of family members)
Environment Ontology (ENVO)	Unclassified (93.277 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant surface (84.034 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 37.65% β-sheet: 0.00% Coil/Unstructured: 62.35%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF14214	Helitron_like_N	0.84
PF07714	PK_Tyr_Ser-Thr	0.84
PF13966	zf-RVT	0.84
PF07727	RVT_2	0.84
PF13963	Transpos_assoc	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.36

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
All Organisms	root	All Organisms	18.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
cellular organisms	root	All Organisms → cellular organisms	18.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	18.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	18.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	18.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	18.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	18.49 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	16.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	16.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	16.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	16.81 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	15.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Liliopsida	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida	15.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Petrosaviidae	subclass	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae	15.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
commelinids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids	15.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Poales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales	15.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Poaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae	15.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
PACMAD clade	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade	15.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Panicoideae	subfamily	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae	15.97 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Panicodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae	15.13 %
Andropogonodae	no rank	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Paniceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	15.13 %
Andropogoneae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Panicinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae	12.61 %
Tripsacinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae	0.84 %
Anthephorinae	subtribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Panicum	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	12.61 %
Zea	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea	0.84 %
Digitaria	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Panicum sect. Hiantes	section	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes	10.92 %
Zea mays	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	0.84 %
Digitaria exilis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	81.51 %
Panicum virgatum	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	10.92 %
Zea mays	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	0.84 %
Digitaria exilis	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300005335\|Ga0070666_11214794	Not Available	562	Open in IMG/M
3300005347\|Ga0070668_101989328	Not Available	536	Open in IMG/M
3300005353\|Ga0070669_101688538	Not Available	552	Open in IMG/M
3300005843\|Ga0068860_100735492	Not Available	998	Open in IMG/M
3300009976\|Ga0105128_110105	Not Available	642	Open in IMG/M
3300009981\|Ga0105133_100440	Not Available	1597	Open in IMG/M
3300009989\|Ga0105131_128033	Not Available	590	Open in IMG/M
3300009994\|Ga0105126_1042148	Not Available	564	Open in IMG/M
3300009994\|Ga0105126_1046818	Not Available	542	Open in IMG/M
3300009995\|Ga0105139_1054624	Not Available	711	Open in IMG/M
3300010403\|Ga0134123_13519114	Not Available	507	Open in IMG/M
3300014968\|Ga0157379_12051253	Not Available	566	Open in IMG/M
3300015270\|Ga0182183_1033729	Not Available	696	Open in IMG/M
3300015278\|Ga0182099_1062558	Not Available	528	Open in IMG/M
3300015280\|Ga0182100_1041723	Not Available	677	Open in IMG/M
3300015290\|Ga0182105_1016767	Not Available	920	Open in IMG/M
3300015290\|Ga0182105_1100906	Not Available	516	Open in IMG/M
3300015297\|Ga0182104_1003087	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1521	Open in IMG/M
3300015301\|Ga0182184_1046379	Not Available	656	Open in IMG/M
3300015301\|Ga0182184_1090417	Not Available	523	Open in IMG/M
3300015306\|Ga0182180_1061859	Not Available	587	Open in IMG/M
3300015306\|Ga0182180_1077441	Not Available	541	Open in IMG/M
3300015311\|Ga0182182_1046093	Not Available	709	Open in IMG/M
3300015312\|Ga0182168_1091223	Not Available	590	Open in IMG/M
3300015315\|Ga0182120_1085819	Not Available	608	Open in IMG/M
3300015315\|Ga0182120_1097415	Not Available	579	Open in IMG/M
3300015315\|Ga0182120_1122528	Not Available	529	Open in IMG/M
3300015317\|Ga0182136_1003956	Not Available	1559	Open in IMG/M
3300015317\|Ga0182136_1071052	Not Available	653	Open in IMG/M
3300015318\|Ga0182181_1022420	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	873	Open in IMG/M
3300015319\|Ga0182130_1050453	Not Available	719	Open in IMG/M
3300015319\|Ga0182130_1084232	Not Available	604	Open in IMG/M
3300015319\|Ga0182130_1132014	Not Available	510	Open in IMG/M
3300015324\|Ga0182134_1014321	Not Available	1120	Open in IMG/M
3300015326\|Ga0182166_1007096	Not Available	1303	Open in IMG/M
3300015327\|Ga0182114_1059314	Not Available	749	Open in IMG/M
3300015327\|Ga0182114_1133554	Not Available	546	Open in IMG/M
3300015328\|Ga0182153_1074978	Not Available	662	Open in IMG/M
3300015328\|Ga0182153_1137818	Not Available	525	Open in IMG/M
3300015329\|Ga0182135_1010654	Not Available	1245	Open in IMG/M
3300015329\|Ga0182135_1019036	Not Available	1050	Open in IMG/M
3300015329\|Ga0182135_1070484	Not Available	683	Open in IMG/M
3300015332\|Ga0182117_1068868	Not Available	731	Open in IMG/M
3300015332\|Ga0182117_1091131	Not Available	655	Open in IMG/M
3300015332\|Ga0182117_1131831	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	562	Open in IMG/M
3300015333\|Ga0182147_1000765	Not Available	2579	Open in IMG/M
3300015333\|Ga0182147_1042528	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	857	Open in IMG/M
3300015333\|Ga0182147_1070093	Not Available	717	Open in IMG/M
3300015333\|Ga0182147_1101721	Not Available	621	Open in IMG/M
3300015334\|Ga0182132_1016906	Not Available	1154	Open in IMG/M
3300015335\|Ga0182116_1000112	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	4198	Open in IMG/M
3300015335\|Ga0182116_1026403	Not Available	1050	Open in IMG/M
3300015336\|Ga0182150_1025137	Not Available	996	Open in IMG/M
3300015336\|Ga0182150_1103056	Not Available	611	Open in IMG/M
3300015337\|Ga0182151_1024985	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	998	Open in IMG/M
3300015337\|Ga0182151_1094459	Not Available	632	Open in IMG/M
3300015338\|Ga0182137_1147615	Not Available	547	Open in IMG/M
3300015339\|Ga0182149_1060035	Not Available	769	Open in IMG/M
3300015339\|Ga0182149_1081022	Not Available	688	Open in IMG/M
3300015339\|Ga0182149_1143399	Not Available	546	Open in IMG/M
3300015340\|Ga0182133_1000710	Not Available	2808	Open in IMG/M
3300015340\|Ga0182133_1028526	Not Available	1046	Open in IMG/M
3300015348\|Ga0182115_1069838	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Anthephorinae → Digitaria → Digitaria exilis	1065	Open in IMG/M
3300015348\|Ga0182115_1148368	Not Available	751	Open in IMG/M
3300015349\|Ga0182185_1270801	Not Available	518	Open in IMG/M
3300015350\|Ga0182163_1096172	Not Available	894	Open in IMG/M
3300015350\|Ga0182163_1229454	Not Available	582	Open in IMG/M
3300015352\|Ga0182169_1134916	Not Available	802	Open in IMG/M
3300015352\|Ga0182169_1229935	Not Available	604	Open in IMG/M
3300015353\|Ga0182179_1079425	Not Available	952	Open in IMG/M
3300015353\|Ga0182179_1083810	Not Available	932	Open in IMG/M
3300015353\|Ga0182179_1203853	Not Available	630	Open in IMG/M
3300015353\|Ga0182179_1218635	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	610	Open in IMG/M
3300015353\|Ga0182179_1231998	Not Available	593	Open in IMG/M
3300015353\|Ga0182179_1291825	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	530	Open in IMG/M
3300015354\|Ga0182167_1022410	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum	1908	Open in IMG/M
3300015354\|Ga0182167_1023267	Not Available	1885	Open in IMG/M
3300015354\|Ga0182167_1031378	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	1705	Open in IMG/M
3300015354\|Ga0182167_1038945	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Andropogonodae → Andropogoneae → Tripsacinae → Zea → Zea mays	1576	Open in IMG/M
3300015354\|Ga0182167_1048322	Not Available	1451	Open in IMG/M
3300015354\|Ga0182167_1119867	Not Available	968	Open in IMG/M
3300015354\|Ga0182167_1214216	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	702	Open in IMG/M
3300017412\|Ga0182199_1044436	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	888	Open in IMG/M
3300017412\|Ga0182199_1100172	Not Available	665	Open in IMG/M
3300017412\|Ga0182199_1141979	Not Available	582	Open in IMG/M
3300017414\|Ga0182195_1021694	Not Available	1163	Open in IMG/M
3300017414\|Ga0182195_1038871	Not Available	965	Open in IMG/M
3300017414\|Ga0182195_1055272	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	856	Open in IMG/M
3300017414\|Ga0182195_1071893	Not Available	780	Open in IMG/M
3300017414\|Ga0182195_1148226	Not Available	593	Open in IMG/M
3300017414\|Ga0182195_1223557	Not Available	501	Open in IMG/M
3300017422\|Ga0182201_1033912	Not Available	817	Open in IMG/M
3300017432\|Ga0182196_1067601	Not Available	672	Open in IMG/M
3300017439\|Ga0182200_1093880	Not Available	613	Open in IMG/M
3300017694\|Ga0182211_1046731	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	989	Open in IMG/M
3300026118\|Ga0207675_101605553	Not Available	671	Open in IMG/M
3300028049\|Ga0268322_1039729	Not Available	570	Open in IMG/M
3300028053\|Ga0268346_1039604	Not Available	523	Open in IMG/M
3300028058\|Ga0268332_1009837	Not Available	995	Open in IMG/M
3300028058\|Ga0268332_1036761	Not Available	665	Open in IMG/M
3300028062\|Ga0268342_1040501	Not Available	522	Open in IMG/M
3300028139\|Ga0268355_1011754	Not Available	586	Open in IMG/M
3300028142\|Ga0268347_1025364	Not Available	557	Open in IMG/M
3300028152\|Ga0268336_1013805	Not Available	646	Open in IMG/M
3300028466\|Ga0268321_103635	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	700	Open in IMG/M
3300028467\|Ga0268333_1002854	Not Available	799	Open in IMG/M
3300032465\|Ga0214493_1034897	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1154	Open in IMG/M
3300032490\|Ga0214495_1083569	Not Available	742	Open in IMG/M
3300032502\|Ga0214490_1118452	Not Available	603	Open in IMG/M
3300032502\|Ga0214490_1124611	Not Available	586	Open in IMG/M
3300032590\|Ga0214489_1007836	Not Available	1410	Open in IMG/M
3300032625\|Ga0214501_1106531	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae	894	Open in IMG/M
3300032625\|Ga0214501_1141824	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	768	Open in IMG/M
3300032689\|Ga0214497_1008114	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	1856	Open in IMG/M
3300032697\|Ga0214499_1287009	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → Liliopsida → Petrosaviidae → commelinids → Poales → Poaceae → PACMAD clade → Panicoideae → Panicodae → Paniceae → Panicinae → Panicum → Panicum sect. Hiantes → Panicum virgatum	506	Open in IMG/M
3300032790\|Ga0314731_1022834	Not Available	1030	Open in IMG/M
3300033535\|Ga0314759_1209351	Not Available	620	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	99.16%
Environmental	Environmental	0.84%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	99.16%
Terrestrial	Environmental → Terrestrial	0.84%

Habitat	Taxonomy	Distribution
Phyllosphere	Host-Associated → Plants → Phyllosphere	88.24%
Unclassified	Host-Associated → Plants → Unclassified	5.04%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.36%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.52%
Soil	Environmental → Terrestrial → Soil	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified	88.24%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified	5.04%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	2.52%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified	88.24%
Unclassified	Host-Associated → Plants → Unclassified → Unclassified → Unclassified	5.04%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	2.52%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.52%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Switchgrass Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere	79.83%
Phyllosphere	Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere	8.40%
Switchgrass Associated	Host-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated	5.04%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	2.52%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	2.52%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300005335	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG	Host-Associated	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300009976	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaG	Host-Associated	Open in IMG/M
3300009981	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaG	Host-Associated	Open in IMG/M
3300009989	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaG	Host-Associated	Open in IMG/M
3300009994	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaG	Host-Associated	Open in IMG/M
3300009995	Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaG	Host-Associated	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015270	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015278	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015280	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015290	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015297	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015301	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015306	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015311	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015312	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015315	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015317	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015318	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015319	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015324	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015326	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015327	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015328	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015329	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015332	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015333	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015334	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015335	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015336	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015337	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015338	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015339	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12JUL2016_LD1 MG	Host-Associated	Open in IMG/M
3300015340	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MG	Host-Associated	Open in IMG/M
3300015348	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MG	Host-Associated	Open in IMG/M
3300015349	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015350	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015352	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015353	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300015354	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MG	Host-Associated	Open in IMG/M
3300017412	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017414	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017422	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017432	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017439	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MG	Host-Associated	Open in IMG/M
3300017694	Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_03OCT2016_LD1 MG	Host-Associated	Open in IMG/M
3300026118	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028049	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028053	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028058	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028062	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028139	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_18SEP2017_LD1	Host-Associated	Open in IMG/M
3300028142	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1	Host-Associated	Open in IMG/M
3300028152	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300028466	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_26JUN2017_LD1	Host-Associated	Open in IMG/M
3300028467	Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_07AUG2017_LD1	Host-Associated	Open in IMG/M
3300032465	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032490	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_NF_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032502	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_12JUL2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032590	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_31MAY2016_LR3 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032625	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032689	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_12JUL2016_LR2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032697	Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300032790	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_26JUN2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300033535	Metatranscriptome of switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_28AUG2017_LR1 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0070666_112147941	3300005335	Switchgrass Rhizosphere	MPPPGAIDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDAAGADVSH*
Ga0070668_1019893281	3300005347	Switchgrass Rhizosphere	VPPPGAIDAWPIWYRLMELTGAFVCALAPVCAVVRPASARRRPKVPVIVATGTDDSH*
Ga0070669_1016885381	3300005353	Switchgrass Rhizosphere	MPPPGAIDAWPIWYRLMDLTGAFVSALAPVCAVARLASARRRPRVPAIDVAGVDVSH*
Ga0068860_1007354922	3300005843	Switchgrass Rhizosphere	VPPPGAIDAWPIWYRLMELTGAFVSALAPVCAVARLASARRMPKVPAIDVAGADISH*
Ga0068860_1017275952	3300005843	Switchgrass Rhizosphere	WPIWYRFMELTGVFVCVLSPVCVVVCLASARRKPKVPAIVATGTDASH*
Ga0105128_1101051	3300009976	Switchgrass Associated	VPPPGDIDAWLIWYRLMDLTGAFVSVLALVCVVTRVACIWRRPRVLAIDATGADVFY*
Ga0105133_1004401	3300009981	Switchgrass Associated	VPPPGAIDAWPIWYRLMDLTGVFVSALAPVCAVACFANARRRPRVPAIDAAGADVSH*
Ga0105131_1280331	3300009989	Switchgrass Associated	PGAIDAWPIWYRLMELTGAFVSALAPVCAVARFARTRRWLRVPAIDAAGADVSH*
Ga0105126_10421481	3300009994	Switchgrass Associated	VPLPGAIDAWPIWYRLKALTGAFVSALASVCVVARFASARRRPKLPAIVATGTNASY*
Ga0105126_10468181	3300009994	Switchgrass Associated	MLHKYRVMPPPGAIDAWPIWYRLMDLIGAFVSALALVCAMAHLASARRWPRVPAIDAAGADVSH*
Ga0105139_10546241	3300009995	Switchgrass Associated	IDAWPIWYRLMELTGAFVSALAPVFAVVHLASARRMLRVPAIDAAGTDISH*
Ga0134123_135191141	3300010403	Terrestrial Soil	VPPPGAIDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDAAGADVSH*
Ga0157379_120512531	3300014968	Switchgrass Rhizosphere	VQPPGAIDAWPIWYRLMELTGAFVSALAPVFAVVHLASARRMLRVPAIDAAGADVSH*
Ga0182183_10337291	3300015270	Switchgrass Phyllosphere	HRVVPLPGAIDASSIWYRVMALTGDFVSALAPVCAVARFASARRRPRAPVIITAGADISH
Ga0182099_10625581	3300015278	Switchgrass Phyllosphere	VPPPGAIDASTIWYRLMALPGAFASALAPVCAVARLASARRRPIVPASVATGADGLH*
Ga0182100_10417231	3300015280	Switchgrass Phyllosphere	VPPPGAIDAWSIWYRLMDLTGVFVSALAPVCAVACFASTRCWPRVPAIDAAGADAFH*
Ga0182105_10167672	3300015290	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMELTGAFVSALAPVCAVARFATARRMPKVPAIDAAGADVSH*
Ga0182105_11009061	3300015290	Switchgrass Phyllosphere	MPPPGAIDAWPIWYRLMDLTDVFVSALAPVCAVARLASAWRRPRVPVIDTAGADVSH*
Ga0182104_10030873	3300015297	Switchgrass Phyllosphere	AIDAWPIWYGLMDLTGAFVSALAPVCTVARLASARRRPRVPAIDAAGADVSH*
Ga0182184_10463791	3300015301	Switchgrass Phyllosphere	VPPPGVIDAWLIWNRLMELTGAFVSALAPVFTVVHLASARRMLRVPAIDAAGADVSH*
Ga0182184_10904172	3300015301	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDAAGVDVSH*
Ga0182180_10618591	3300015306	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMELTGVFVSALAPVFAVVHFASARRMLRVPA
Ga0182180_10774411	3300015306	Switchgrass Phyllosphere	MLHKHRVVQPPGAIDAWPIWYRLMELTGAFVSALAPVFAVVHLASARRMLRVPAIDAAGADVSH*
Ga0182182_10460931	3300015311	Switchgrass Phyllosphere	MPPPGAIDAWPIWYRLMELTGAFVSALAPVFAVVHLASALRMLRVSAIDAAGADVSH*
Ga0182182_10876181	3300015311	Switchgrass Phyllosphere	IWYRLMDLTGAFVSALAPVCAVARFASARRWPRVLAIDAVSADVSH*
Ga0182168_10912231	3300015312	Switchgrass Phyllosphere	AIDASSNWYRLMALTGTFVSALTPVCAVARLANARRRPKVLTIVAAGADVSY*
Ga0182120_10858191	3300015315	Switchgrass Phyllosphere	GAIDAWPIWYRLMDLTGALVNALAPVCAVARLASARRRPRVPAIDAAGADVSH*
Ga0182120_10974152	3300015315	Switchgrass Phyllosphere	VPLPDAIDASSIWYRVMALTGAFVSALAPVCAMARLASARRRPRVPVIVVAGADTSH*
Ga0182120_11225281	3300015315	Switchgrass Phyllosphere	MPPPGAIDAWPIWYRLMELTGAFVSALAPVFAMVHLASARRMLRVPAIDAAGADVSH*
Ga0182136_10039562	3300015317	Switchgrass Phyllosphere	VPPPGAIDVWPIWYRLMDLTGAFVSALAPVCTVARLASARRRPRVPAIDAAGANVSH*
Ga0182136_10710521	3300015317	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMELTSAFVSALAPVFAVVHLASARRMLRVPAIDAAGADVSH*
Ga0182181_10224201	3300015318	Switchgrass Phyllosphere	VPSPGAIDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDTAGADVSH*
Ga0182130_10504531	3300015319	Switchgrass Phyllosphere	IDASIIWYRLMTLPGAFVSALAPVCAMTHLASARRRPIVPASVAAGADALY*
Ga0182130_10842321	3300015319	Switchgrass Phyllosphere	VPPPGAIDAWPIWYGLMDLTGAFVSALAPVCAVARLASARRRPRVPAIDAAGADVSH*
Ga0182130_11320141	3300015319	Switchgrass Phyllosphere	RVVPPPGAIDAWPIWYGLMDLTGTFVSALAPVCAVMRLASARRRPRVPAIDVAGVDVSH*
Ga0182134_10143211	3300015324	Switchgrass Phyllosphere	MPPPGAIDAWPIWYQLMDLTSAFVDALAPVCAVARLASARRRPRVPAIDVAGVDVSH*
Ga0182166_10070961	3300015326	Switchgrass Phyllosphere	IDAWPIWYRLMDLTCVFVSALAPVCAVARLASARRRPRVSAIDAAGADVSH*
Ga0182114_10593142	3300015327	Switchgrass Phyllosphere	VPPSGAIDAWPIWYRLMELTGAFVSALAPVCAVARLANARCMPRVPAIDAAGADVSH*
Ga0182114_11335541	3300015327	Switchgrass Phyllosphere	VPPPGAIDVWPIWYRLMELTGAFVCALAPVCAVVRPASARRRPKVPAIVATGTDASH*
Ga0182153_10749781	3300015328	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMDLTGAFVSALAPVCAVARFANARRRPRVPAIDAAGADVSH*
Ga0182153_11378181	3300015328	Switchgrass Phyllosphere	VPLPGAIDASSIWYRVMALTGAFVNALAPVCAVALLASARRRPRVPVIIAADADTSH*
Ga0182135_10106542	3300015329	Switchgrass Phyllosphere	VPLPGAIDASFIWYQLMTLTGVFVSALAPVCAVARLTSAWRRPRVPVIDAAGADVSH*
Ga0182135_10190362	3300015329	Switchgrass Phyllosphere	DAWPIWYRLMALTGVFVSALASVCGVARLANAWRRPKVPAIVATGTNASY*
Ga0182135_10704841	3300015329	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMDLTGVFVGANAPVCAVARLASARRRLRVPAIDAAGADVSH*
Ga0182117_10688681	3300015332	Switchgrass Phyllosphere	SIWYRLMDLTGAFVSALAPVYAVTHLASARRRPKVPVIDATDTDVSH*
Ga0182117_10911311	3300015332	Switchgrass Phyllosphere	MPPPGAVDAWPIWYRLMELTGAFVSALAPVCAVARLASARHMPRVPAIDAAGADVSH*
Ga0182117_11318311	3300015332	Switchgrass Phyllosphere	PPPGAIDAWPIWYRLMYLTGAFVSALALVCAMARLASACRRPRVPAIDAAGDDVSH*
Ga0182147_10007653	3300015333	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMDLTGTFVSALAPVCAVAGLARARRRPRVPVIDAAGADVSH*
Ga0182147_10425281	3300015333	Switchgrass Phyllosphere	KHWVVPPPGAIDAWPIWYRLMDLTGAFVSALAPVCAVACFASVRCMPRVPGIDAAGADVSH*
Ga0182147_10700931	3300015333	Switchgrass Phyllosphere	MLHKHRVVPPPGAIDAWPIWYRLMELTGVFVSALAPVFAVVHFASARRMLRVPAIDAAGADISH*
Ga0182147_11017211	3300015333	Switchgrass Phyllosphere	GAIDASIIWYRLMTLPGAFVIALAPVCAMTHLASARRRLIVPASVAASADVLH*
Ga0182132_10169061	3300015334	Switchgrass Phyllosphere	GAIDAWPIWYRLMDLTGVFVSALAPVCAVTRLASARRRPRVPAIDAAGANVSH*
Ga0182116_10001124	3300015335	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMDLTGDFVSALAPVCVVARFANARRRPRVPAIDAAGADVSH*
Ga0182116_10264031	3300015335	Switchgrass Phyllosphere	IDAWPIWYRLMELTGAFVSALAPVFAVVHLASARRMLRVPAIDAAGADVSH*
Ga0182150_10251371	3300015336	Switchgrass Phyllosphere	VQQPGAIDAWSIWYRLMELTGAFVSALAPVFAVVHLASALRMLRVPAIDAAGADVSH*
Ga0182150_11030561	3300015336	Switchgrass Phyllosphere	IDASSIWYRVMALTGAFVSALAPVCAVARLASARRRSRVPVIIAAGADTSH*
Ga0182151_10249852	3300015337	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMELTGAFVSALAPVCAVARLASAWRMQRVPAIDAAGADVSH*
Ga0182151_10944591	3300015337	Switchgrass Phyllosphere	LLHKHRVMPLPGAIDASSIWYRFMALTGAFVSALAPVCAMARLASARRMPRVPVIVVAGADISH*
Ga0182137_11476151	3300015338	Switchgrass Phyllosphere	MPPPSAVDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDTAGADVSH*
Ga0182149_10600352	3300015339	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMDLTGAFVSALALVCAVARLASARRRPRVPAIDAAGADVSH*
Ga0182149_10810221	3300015339	Switchgrass Phyllosphere	PIWYRLMDLTGAFVSVLAPVCAVARLTSARRRPRVPAIDAAGADVSH*
Ga0182149_11433991	3300015339	Switchgrass Phyllosphere	PPGAIDAWPIWYRLIELIGAFVSALAPVCAVVRLASARRRPRVPTIDAASADVSH*
Ga0182133_10007102	3300015340	Switchgrass Phyllosphere	VPPSGAIDAWPIWYGLMDLTGAFVSALAPVCAVARLASARRRPRVPAIDVAGVDVSH*
Ga0182133_10285261	3300015340	Switchgrass Phyllosphere	MPPPGAVDAWSIWYRLMDLTGAFVSALAPVCAVACFANARRRSRVPAIDAAGADVSH*
Ga0182115_10698381	3300015348	Switchgrass Phyllosphere	IDAWPIWYRLMDLTGVFVSALAPVCAMARLASAQRRPRVPAIDAAGADVSH*
Ga0182115_11483681	3300015348	Switchgrass Phyllosphere	DAWPIWYRLMELTGAFVSALAPVFAVVHLASARRMLRVPVIDAAGADVSY*
Ga0182185_12708012	3300015349	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMDLTGVFVSVLAPVYAVACFASTRCWPRVPAIDAAGADVFH*
Ga0182163_10961721	3300015350	Switchgrass Phyllosphere	SAIDAWPIWYRLMELTGVFVSALAPVFAVVHLASARRMLRVPAIDAAGADVSH*
Ga0182163_12294541	3300015350	Switchgrass Phyllosphere	PGAIDAWPIWYRLIELTGAFVSALAPVCAMARLASARRRQRVPTIDAAGADVSH*
Ga0182169_11349161	3300015352	Switchgrass Phyllosphere	MPPPGAIDAWPIWYRLMDLTGAFVSALAPVCAMARHASARRRPIVPAIDAASADVSH*
Ga0182169_12299351	3300015352	Switchgrass Phyllosphere	HRFMPPPGAIDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDTAGADVSH
Ga0182179_10794251	3300015353	Switchgrass Phyllosphere	WPIWYRLMDLTGVFVSALAPVCAVARLASARRRPRVPAIDVAGVDVSH*
Ga0182179_10838101	3300015353	Switchgrass Phyllosphere	LPGAIDASSIWYRVMALTGAFVSALALVCAVARLASARRRSRVPVIIAAGADTSH*
Ga0182179_12038531	3300015353	Switchgrass Phyllosphere	WPIWYRLMDLTGVFVSALAPVCAVARLVSAWRRPRVPVIDTAGADVSH*
Ga0182179_12186351	3300015353	Switchgrass Phyllosphere	WPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDAAGADVSH*
Ga0182179_12319982	3300015353	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMELTGAFVCALAPVCAVARLASTRRRPKVPAIVATGTHASH*
Ga0182179_12918251	3300015353	Switchgrass Phyllosphere	LLHKHRVVPPPGAIDAWPIWYRLIKLTGVFVCVLASVCAVARLASARRRPKVPAIVATGTHASH*
Ga0182167_10224103	3300015354	Switchgrass Phyllosphere	VPPPDAIDAWPIWYRLMELTGAFVSALAPVCAVAHLTSARRMPRVPAIDAAGADVSH*
Ga0182167_10232671	3300015354	Switchgrass Phyllosphere	VPPPGAIDARPIWYRLMDLTGAFVSALAPVCAVARFGNARRRPRVPAIDVAGADVSH*
Ga0182167_10313782	3300015354	Switchgrass Phyllosphere	AWPIWYRLMELTGAFVSALAPVFAVVHLASARRMLRVPAIDAAGADVSH*
Ga0182167_10389452	3300015354	Switchgrass Phyllosphere	VPAPSAIDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDAAGADVSH*
Ga0182167_10483221	3300015354	Switchgrass Phyllosphere	AWTIWYRLMDLTGAFVSALVLVCAVARLASARRRPKVSAIDAAGADVSH*
Ga0182167_11198671	3300015354	Switchgrass Phyllosphere	AIDAPSIWYRLMALTGAFVSALAPVCAVPRLASARRRPIVPAIDAAGADVSH*
Ga0182167_12142161	3300015354	Switchgrass Phyllosphere	PYAIDAWPFWYRLKELTGAFVSALAPVCAVERLASARRRPRVPAIDVAGADVSY*
Ga0182199_10444362	3300017412	Switchgrass Phyllosphere	LHKHRVVPPPGVIDAWPIWYRLIELTGAFVSALAPVFAVVHLASARRMLRVPAIDAASADVPH
Ga0182199_11001721	3300017412	Switchgrass Phyllosphere	DTWPFWYRLKELTGAFVSALAPVCAVARLASARRRPRVPAIDAAGANVSH
Ga0182199_11419791	3300017412	Switchgrass Phyllosphere	VPPPGAIDASSIWYRLMALTGAFVSALAPVCAVARLASARRRPRVAAIVATGTNTLYQYRTGWCSGWYF
Ga0182195_10216941	3300017414	Switchgrass Phyllosphere	HKHRVVPPPGAIDAWPIWYQLMDLTGAFVSALAPVCAVARFASARRWPRVPAIDAAGADVSH
Ga0182195_10388711	3300017414	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMELTGAFVSALAPVFAVVHLASARRMLRVPAIDAAGTDISH
Ga0182195_10552721	3300017414	Switchgrass Phyllosphere	MPPPGAVDVWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDAISADVS
Ga0182195_10718931	3300017414	Switchgrass Phyllosphere	VPLPDAIDASSIWYRVMALTGDFVSALAPVCAMARLASARRMPRVPVIVVAGADISH
Ga0182195_11482262	3300017414	Switchgrass Phyllosphere	PPGANDAWLIWYRLMDLTGVFVSALAPVCAVVRLASARRRPRVPVIDAAGADVSH
Ga0182195_12235571	3300017414	Switchgrass Phyllosphere	VPPPGAIDAWSIWYRLMESTGAFVCALAPVCTMACLASARCRPRVPAIVATGTDAL
Ga0182201_10339121	3300017422	Switchgrass Phyllosphere	PPGAINVWPIWYGLMDLTGAFVSALALVCAVARLASTRRRPRVPAIDAAGADVSH
Ga0182196_10676011	3300017432	Switchgrass Phyllosphere	CLLHLHRVVPLPDAIDASSIWYRVMALTGDFVSALAPVCAVARFASARRRPRAPVIITAGADISH
Ga0182200_10938801	3300017439	Switchgrass Phyllosphere	VPSPGAIDAWPIWYRLMELTGAFVCALAPVCAVARLASARRRPKVPAIVASGTHASH
Ga0182211_10467311	3300017694	Switchgrass Phyllosphere	VPPSGAIDAWPIWYRLMDLTGAFVSALAPVCAVARLASARRRPRVPAIDAAGADVSH
Ga0207675_1016055531	3300026118	Switchgrass Rhizosphere	VPPPGAIDVWPIWYRLMELTGAFVCALAPVCAVVRLASARRRPKVPAIIATGTDALH
Ga0268322_10397291	3300028049	Phyllosphere	KNRVVPLPGAIDAWPILYRLMALTGAFVSALSSVCAVARLASARRRPKVPAIVATGTDAS
Ga0268346_10396041	3300028053	Phyllosphere	MPPPGAIDAWPIWYQLMDLTSAFVDALAPVCAVARLASARRMPRVPVIVVAGADISH
Ga0268332_10098371	3300028058	Phyllosphere	LPPPGAIDAWPIWYRLIDLTGAFVSAFVPVCAVARLASAWRRPRVPVIDAAGADVSH
Ga0268332_10367611	3300028058	Phyllosphere	VPPPGAIDAWPIWYRLMDLTGVFVSALAPVCAVARLASARRMPRVPAIDAADVDVSH
Ga0268342_10405011	3300028062	Phyllosphere	MPPPGAIDAWPIWYRLMDLTGAFVSALAPVCAVTCFISARSRPRVPIIDAAGADVSD
Ga0268355_10117541	3300028139	Phyllosphere	HRVVPLPDAIDASSIWYRVMALTGDFVSALAPVCAMARLASARRMPRVPVIVVAGADISH
Ga0268347_10253641	3300028142	Phyllosphere	RFMPPPGAVDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDAAGADVSH
Ga0268336_10138051	3300028152	Phyllosphere	MPPPGAIDAWPIWYRLMDLTGAFVSALSPVCAVARFACARRWPRVPAIDAAGADVSH
Ga0268321_1036352	3300028466	Phyllosphere	VPPPGAIDAWPIWYRLMELTGAFVSALAPVFAVVHLASARRMLRVPAIDAAGADVSH
Ga0268333_10028541	3300028467	Phyllosphere	VPPPGAIDASSIWYRLMALTGAFVSALVPVCAVARLASARRRPRVPTIVAAGADASH
Ga0214493_10348971	3300032465	Switchgrass Phyllosphere	MPPPGAIDAWPIWYRLMDLTGAFVSALAPVCAVARFASARRWPRVPAIDAAGADVSH
Ga0214495_10835691	3300032490	Switchgrass Phyllosphere	VPPPGAIDAWANWYRLMDLTGAFVSALAPVCAVARLASARRRPRVPAIDAAGADVSH
Ga0214490_11184521	3300032502	Switchgrass Phyllosphere	YWVMPPPGAIDAWPIWYRLMDLTSAFVSALAPVCAVRHASARRRPIVPAIDAAGADVSH
Ga0214490_11246111	3300032502	Switchgrass Phyllosphere	VPPPGAIDASTIWYRLMALSGAFVSALAPVCAVARLASARRRPIVPASVATSVDVLR
Ga0214489_10078361	3300032590	Switchgrass Phyllosphere	MPPPGAIDAWPIWYRLMDLTGVFVSALAPVCAVARLASAWRRPRVPVIDTAGADVSH
Ga0214501_11065313	3300032625	Switchgrass Phyllosphere	MPPPGAIDAWSIWYRLMDLTGVFVSVLAPVCAVARLASARRRPRVTAIDAAGADVSH
Ga0214501_11418242	3300032625	Switchgrass Phyllosphere	VSPPGAIDAWPIWYRLMDLTGAFVSVLAPVCAVARLASARRRLRIPAIDAAGADVSH
Ga0214497_10081142	3300032689	Switchgrass Phyllosphere	VPPPGAIDAWRIWYRLMDLTGAFVSALAPVCAVARLASARCRPRVPAIDAAGADVSH
Ga0214499_12870091	3300032697	Switchgrass Phyllosphere	PPPGAIDAWPIWYRLMDLTGVIVSALAPVCAMARLASARRRPRVPAIDAAGADVSH
Ga0314731_10228342	3300032790	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMDLTGAFVSALAPVCAVARLASARCRPRVPAIDAAGADVSH
Ga0314759_12093512	3300033535	Switchgrass Phyllosphere	VPPPGAIDAWPIWYRLMELTGAFVSALAPVFAMVHLASARRMLRVPAIDTAGADVSH

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074256

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences