Metagenome Family F074327

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Overview

Basic Information
Family ID	F074327
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	44 residues
Representative Sequence	MSEFMRILVATGEAKSREEHQALREDLCAHVFAQRGEFLEPYVD
Number of Associated Samples	20
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	33.91 %
% of genes near scaffold ends (potentially truncated)	18.49 %
% of genes from short scaffolds (< 2000 bps)	52.94 %
Associated GOLD sequencing projects	12
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.52

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (65.546 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine (94.118 % of family members)
Environment Ontology (ENVO)	Unclassified (99.160 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Surface (saline) (100.000 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 51.39% β-sheet: 0.00% Coil/Unstructured: 48.61%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.52
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.52
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF04827	Plant_tran	7.56
PF00078	RVT_1	1.68
PF07727	RVT_2	1.68
PF01490	Aa_trans	0.84
PF14223	Retrotran_gag_2	0.84
PF03184	DDE_1	0.84
PF00428	Ribosomal_60s	0.84
PF13602	ADH_zinc_N_2	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.84
COG0814	Amino acid permease	Amino acid transport and metabolism [E]	0.84
COG2058	Ribosomal protein L12E/L44/L45/RPP1/RPP2	Translation, ribosomal structure and biogenesis [J]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.55 %
Rhodophyta	phylum	Rhodophyta	25.21 %
All Organisms	root	All Organisms	9.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.55 %
Bangiophyceae	class	Rhodophyta → Bangiophyceae	25.21 %
cellular organisms	root	All Organisms → cellular organisms	9.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.55 %
Bangiales	order	Rhodophyta → Bangiophyceae → Bangiales	25.21 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	9.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.55 %
Bangiaceae	family	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae	25.21 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	9.24 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.55 %
Porphyra	genus	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra	24.37 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	9.24 %
Neopyropia	genus	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Neopyropia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	65.55 %
Porphyra umbilicalis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	24.37 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	9.24 %
Neopyropia yezoensis	species	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Neopyropia → Neopyropia yezoensis	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004791\|Ga0068459_100176	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	46292	Open in IMG/M
3300004791\|Ga0068459_100183	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	45729	Open in IMG/M
3300004791\|Ga0068459_100533	All Organisms → cellular organisms → Eukaryota	25893	Open in IMG/M
3300004791\|Ga0068459_101221	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	16272	Open in IMG/M
3300004791\|Ga0068459_104943	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4862	Open in IMG/M
3300005647\|Ga0079203_1151278	Not Available	675	Open in IMG/M
3300005654\|Ga0079204_10411988	Not Available	516	Open in IMG/M
3300009072\|Ga0115030_1000596	All Organisms → cellular organisms → Eukaryota	15125	Open in IMG/M
3300009072\|Ga0115030_1000818	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Neopyropia → Neopyropia yezoensis	13518	Open in IMG/M
3300009072\|Ga0115030_1001870	All Organisms → cellular organisms → Eukaryota	9464	Open in IMG/M
3300009072\|Ga0115030_1003320	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	6991	Open in IMG/M
3300009072\|Ga0115030_1016630	Not Available	2234	Open in IMG/M
3300009072\|Ga0115030_1022304	All Organisms → cellular organisms → Eukaryota	1760	Open in IMG/M
3300009072\|Ga0115030_1035582	Not Available	1201	Open in IMG/M
3300009072\|Ga0115030_1059477	Not Available	802	Open in IMG/M
3300009072\|Ga0115030_1066895	Not Available	733	Open in IMG/M
3300009073\|Ga0114957_1002741	Not Available	16456	Open in IMG/M
3300009073\|Ga0114957_1005768	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	10144	Open in IMG/M
3300009073\|Ga0114957_1006910	All Organisms → cellular organisms → Eukaryota	8916	Open in IMG/M
3300009073\|Ga0114957_1012954	All Organisms → cellular organisms → Eukaryota	5630	Open in IMG/M
3300009073\|Ga0114957_1021591	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3727	Open in IMG/M
3300009073\|Ga0114957_1022543	Not Available	3598	Open in IMG/M
3300009073\|Ga0114957_1022556	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3597	Open in IMG/M
3300009073\|Ga0114957_1028014	Not Available	3015	Open in IMG/M
3300009073\|Ga0114957_1029204	Not Available	2912	Open in IMG/M
3300009073\|Ga0114957_1034500	All Organisms → cellular organisms → Eukaryota	2537	Open in IMG/M
3300009073\|Ga0114957_1085105	Not Available	1209	Open in IMG/M
3300009073\|Ga0114957_1094268	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1112	Open in IMG/M
3300009073\|Ga0114957_1110084	Not Available	978	Open in IMG/M
3300009073\|Ga0114957_1121047	Not Available	905	Open in IMG/M
3300009073\|Ga0114957_1185675	Not Available	645	Open in IMG/M
3300009073\|Ga0114957_1207186	Not Available	594	Open in IMG/M
3300009073\|Ga0114957_1233243	Not Available	545	Open in IMG/M
3300009073\|Ga0114957_1234196	Not Available	543	Open in IMG/M
3300009192\|Ga0114954_1022103	Not Available	985	Open in IMG/M
3300009410\|Ga0114955_1000984	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	13048	Open in IMG/M
3300009410\|Ga0114955_1004162	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	6360	Open in IMG/M
3300009410\|Ga0114955_1004455	Not Available	6105	Open in IMG/M
3300009410\|Ga0114955_1009863	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3652	Open in IMG/M
3300009410\|Ga0114955_1011863	Not Available	3189	Open in IMG/M
3300009410\|Ga0114955_1016816	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	2410	Open in IMG/M
3300009410\|Ga0114955_1018187	All Organisms → cellular organisms → Eukaryota	2257	Open in IMG/M
3300009410\|Ga0114955_1029790	Not Available	1493	Open in IMG/M
3300009410\|Ga0114955_1033335	Not Available	1358	Open in IMG/M
3300009410\|Ga0114955_1033737	Not Available	1344	Open in IMG/M
3300009410\|Ga0114955_1087251	Not Available	624	Open in IMG/M
3300009415\|Ga0115029_1004201	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	7516	Open in IMG/M
3300009415\|Ga0115029_1007102	Not Available	5407	Open in IMG/M
3300009415\|Ga0115029_1010117	All Organisms → cellular organisms → Eukaryota	4294	Open in IMG/M
3300009415\|Ga0115029_1010968	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4077	Open in IMG/M
3300009415\|Ga0115029_1047968	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1391	Open in IMG/M
3300009415\|Ga0115029_1053795	Not Available	1275	Open in IMG/M
3300009415\|Ga0115029_1075405	Not Available	997	Open in IMG/M
3300009415\|Ga0115029_1079292	Not Available	963	Open in IMG/M
3300009415\|Ga0115029_1093580	Not Available	859	Open in IMG/M
3300009415\|Ga0115029_1153055	Not Available	620	Open in IMG/M
3300009415\|Ga0115029_1171106	Not Available	577	Open in IMG/M
3300009415\|Ga0115029_1183030	Not Available	553	Open in IMG/M
3300009415\|Ga0115029_1193089	Not Available	535	Open in IMG/M
3300009417\|Ga0114953_1008986	Not Available	6139	Open in IMG/M
3300009417\|Ga0114953_1015943	Not Available	4124	Open in IMG/M
3300009421\|Ga0114952_1076556	Not Available	1227	Open in IMG/M
3300009421\|Ga0114952_1077664	Not Available	1215	Open in IMG/M
3300009421\|Ga0114952_1080565	Not Available	1183	Open in IMG/M
3300009421\|Ga0114952_1175050	Not Available	686	Open in IMG/M
3300009421\|Ga0114952_1269336	Not Available	512	Open in IMG/M
3300009439\|Ga0115031_1004676	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	10076	Open in IMG/M
3300009439\|Ga0115031_1009724	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	6608	Open in IMG/M
3300009439\|Ga0115031_1096867	Not Available	1222	Open in IMG/M
3300009446\|Ga0114956_1028571	Not Available	3261	Open in IMG/M
3300009446\|Ga0114956_1170585	Not Available	960	Open in IMG/M
3300009446\|Ga0114956_1258075	Not Available	724	Open in IMG/M
3300027009\|Ga0209093_1014734	Not Available	2390	Open in IMG/M
3300027009\|Ga0209093_1014834	Not Available	2372	Open in IMG/M
3300027009\|Ga0209093_1018427	Not Available	1844	Open in IMG/M
3300027028\|Ga0209295_1000766	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	13103	Open in IMG/M
3300027028\|Ga0209295_1003029	Not Available	5887	Open in IMG/M
3300027028\|Ga0209295_1034301	Not Available	1202	Open in IMG/M
3300027028\|Ga0209295_1045883	Not Available	916	Open in IMG/M
3300027262\|Ga0209303_1005871	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4977	Open in IMG/M
3300027262\|Ga0209303_1007802	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4029	Open in IMG/M
3300027262\|Ga0209303_1023336	Not Available	1804	Open in IMG/M
3300027262\|Ga0209303_1026312	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1652	Open in IMG/M
3300027262\|Ga0209303_1030283	Not Available	1483	Open in IMG/M
3300027262\|Ga0209303_1032254	Not Available	1413	Open in IMG/M
3300027262\|Ga0209303_1051091	Not Available	982	Open in IMG/M
3300027262\|Ga0209303_1061804	Not Available	838	Open in IMG/M
3300027262\|Ga0209303_1067675	Not Available	776	Open in IMG/M
3300027262\|Ga0209303_1080081	Not Available	674	Open in IMG/M
3300027325\|Ga0209186_1019506	Not Available	3203	Open in IMG/M
3300027325\|Ga0209186_1023819	All Organisms → cellular organisms → Eukaryota	2683	Open in IMG/M
3300027498\|Ga0209185_1094470	Not Available	741	Open in IMG/M
3300027498\|Ga0209185_1103590	Not Available	691	Open in IMG/M
3300027498\|Ga0209185_1134622	Not Available	566	Open in IMG/M
3300027509\|Ga0209187_1003057	Not Available	14703	Open in IMG/M
3300027509\|Ga0209187_1005927	All Organisms → cellular organisms → Eukaryota	8338	Open in IMG/M
3300027509\|Ga0209187_1006609	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	7611	Open in IMG/M
3300027509\|Ga0209187_1012609	Not Available	4536	Open in IMG/M
3300027509\|Ga0209187_1053768	Not Available	1261	Open in IMG/M
3300027509\|Ga0209187_1057502	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1185	Open in IMG/M
3300027509\|Ga0209187_1059314	Not Available	1151	Open in IMG/M
3300027509\|Ga0209187_1059547	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1148	Open in IMG/M
3300027509\|Ga0209187_1060893	Not Available	1123	Open in IMG/M
3300027509\|Ga0209187_1095601	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	749	Open in IMG/M
3300027554\|Ga0209831_1014673	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	4631	Open in IMG/M
3300027554\|Ga0209831_1021793	Not Available	3368	Open in IMG/M
3300027554\|Ga0209831_1024522	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	3045	Open in IMG/M
3300027554\|Ga0209831_1027165	Not Available	2788	Open in IMG/M
3300027554\|Ga0209831_1046994	Not Available	1734	Open in IMG/M
3300027554\|Ga0209831_1075934	Not Available	1128	Open in IMG/M
3300027623\|Ga0209828_1062208	Rhodophyta → Bangiophyceae → Bangiales → Bangiaceae → Porphyra → Porphyra umbilicalis	1341	Open in IMG/M
3300027623\|Ga0209828_1117888	Not Available	843	Open in IMG/M
3300027623\|Ga0209828_1161675	Not Available	670	Open in IMG/M
3300027623\|Ga0209828_1163378	Not Available	665	Open in IMG/M
3300027623\|Ga0209828_1170996	Not Available	643	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	98.32%
Environmental	Environmental	1.68%

Habitat	Taxonomy	Distribution
Algae	Host-Associated → Algae	98.32%
Aquatic	Environmental → Aquatic	1.68%

Habitat	Taxonomy	Distribution
Red Algae	Host-Associated → Algae → Red Algae	98.32%
Marine	Environmental → Aquatic → Marine	1.68%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified	98.32%
Unclassified	Environmental → Aquatic → Marine → Unclassified	1.68%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Algae → Red Algae → Unclassified → Unclassified	98.32%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	1.68%

Habitat	Taxonomy	Distribution
Marine	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Marine	94.12%
Porphyra Umbilicalis	Host-Associated → Algae → Red Algae → Unclassified → Unclassified → Porphyra Umbilicalis	4.20%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.68%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004791	Porphyra umbilicalis microbial communities from the coast of Maine, USA, in Atlantic Ocean	Host-Associated	Open in IMG/M
3300005647	Marine algae microbial communities from Bantry Bay - Bantry Bay, Ireland	Environmental	Open in IMG/M
3300005654	Porphyra Blade Metagenome Co-Assembly	Environmental	Open in IMG/M
3300009072	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG	Host-Associated	Open in IMG/M
3300009073	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG	Host-Associated	Open in IMG/M
3300009192	Marine algal microbial communities from Porto, Portugal - Porto_4 metaG	Host-Associated	Open in IMG/M
3300009410	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG	Host-Associated	Open in IMG/M
3300009415	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG	Host-Associated	Open in IMG/M
3300009417	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG	Host-Associated	Open in IMG/M
3300009421	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG	Host-Associated	Open in IMG/M
3300009439	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG	Host-Associated	Open in IMG/M
3300009446	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG	Host-Associated	Open in IMG/M
3300027009	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027028	Marine algal microbial communities from Porto, Portugal - Porto_5 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027262	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex1 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027325	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Male2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027498	Marine algal microbial communities from Sidmouth, United Kingdom - Sidmouth_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027509	Marine algal microbial communities from Bantry Bay, Ireland - BantryBay_4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027554	Marine algal microbial communities from Maine, USA - Maine_Asex4_metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027623	Marine algal microbial communities from Maine, USA - Maine_Asex2 metaG (SPAdes)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0068459_10017635	3300004791	Porphyra Umbilicalis	MSEFMRILVATGEAKCREEHEALREDLCAHVFAQRGDLLSPYVD*
Ga0068459_10018355	3300004791	Porphyra Umbilicalis	MSEYTRILVAIGEPKCREENEALREDLCAHVFAQRSALLHVYVD*
Ga0068459_10053319	3300004791	Porphyra Umbilicalis	MSEFMRILMATGEAKSREEHAALRQDLCAHVFSQRGEFLAPYLD*
Ga0068459_10122110	3300004791	Porphyra Umbilicalis	MSEFMRILVSTGEAKSREEHQALREDLCAHVIAQRGEFLEPYVD*
Ga0068459_1049432	3300004791	Porphyra Umbilicalis	VAPISELMRILMATGEAKSVAEHMALRDDLCAHVVAQRGELLEPYVD*
Ga0079203_11512782	3300005647	Marine	MSEFMRILMATGEAKSREEHAALREDLCAHVFAQRGEFLEPYLD*
Ga0079204_104119881	3300005654	Marine	VAPMSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGELLEPYLD*
Ga0115030_100059618	3300009072	Marine	MHILMATGEATSVAEHEALRDDLCAHVFAQRGELLEPYVD*
Ga0115030_100081825	3300009072	Marine	MSAFLGLMVSTGETTSLEEHQALREDLRAHVFAQRGEFLKPCLDCFTFE*
Ga0115030_10018704	3300009072	Marine	MSEFMRILMTTGEAKSREEHAALREDLCAHVFAQRGEFLEPYLD*
Ga0115030_10033203	3300009072	Marine	MSAFMRILMATGKAKSREEHAALREDLCAHVFAQRSEFLKPYLD*
Ga0115030_10067425	3300009072	Marine	MSGFIPILMATGEVKSREKHAVLREDLCAHVFPQRGEFLVPYLD*
Ga0115030_10166303	3300009072	Marine	MSELMRVLIATGEAKSLVEHLALCDDLCAHFSVQRGGLLEQYVD*
Ga0115030_10223042	3300009072	Marine	MSEFMRILVATGEAKCREEHEALSEDLCAHVFAQRGELLDPYVD*
Ga0115030_10355822	3300009072	Marine	MSEFMRIFVATGEAKSREEHQALREDLCAHVFSQRGEFLKPYVD*
Ga0115030_10594771	3300009072	Marine	MRILMATGEAKSVAEHQALRDDLCAHVLAQRGELLEPYVD*
Ga0115030_10668952	3300009072	Marine	MSEFMRILMATGEAKSVAEHQALRDDLCAHVFAQRGELLEPYVD*
Ga0114957_100274112	3300009073	Marine	MSEFMRILMATGEAKSVAEHQALRDDLCAHDFAQRGELLEPYVD*
Ga0114957_100576811	3300009073	Marine	MSEFMRILVATGEAKSREEHEALREDLYAHVFAQRGELLDPYVD*
Ga0114957_100691011	3300009073	Marine	MSDFMRILVATGEAKSRKEHEAICENFCGHVFAQRGELPDPYVD*
Ga0114957_10129543	3300009073	Marine	MRILVATGEAKCREKHEALSEDIGAHVFPQRGKLLDSYVD*
Ga0114957_10215911	3300009073	Marine	MSEFMRILMATGETKSQEEHAALREDLCAHAFAQRVEFLEPYLD*
Ga0114957_10225433	3300009073	Marine	MAMGEAKSVAKHKALRDDLCAHDFAQRGELLEPYVD*
Ga0114957_10225562	3300009073	Marine	VRILMATGDAKSKAKHQALRDDLCAHVFAQRGELLEPYID*
Ga0114957_10280144	3300009073	Marine	MSEFMRILVATGEAKSREEHQALREDLCAHVFAQRGEFLEPYVD*
Ga0114957_10292041	3300009073	Marine	MRILMATGEAKSREEHAALREDLCAHVCSQRGEFLAPYLD*
Ga0114957_10345001	3300009073	Marine	MSEFIRILVATGEAKSQEEHEALREDLCAHVFAQRGELLDRYVD*
Ga0114957_10851051	3300009073	Marine	MSEFMRILVATGEAKSQEEHQALREDLCAHVFAQRGELLDPYVD*
Ga0114957_10942682	3300009073	Marine	MRILMATGDAKSVAEHKALRDNLCAHVFAQRGELLEPYVD*
Ga0114957_11100842	3300009073	Marine	MSEFMRILMATGEAKSREEHAALREDLCAHVFSQRGEFLAPYLD*
Ga0114957_11210472	3300009073	Marine	AVAPMSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGELLEPYLD*
Ga0114957_11856751	3300009073	Marine	MATGEAKSREEHAALRQDLCAHVFSQRGEFLAPYLD*
Ga0114957_12071863	3300009073	Marine	MSELMRILMATGEAKSREEHAALRQDLCAHVFSQRGEFLAPYLD*
Ga0114957_12332431	3300009073	Marine	MSDFMRILMATGEAKSREEHAALREDLCAHVFAQRGVFL*
Ga0114957_12341961	3300009073	Marine	TGEAKSLAEHQALRDDLCAHVFAQRGELLEPYVD*
Ga0114954_10221031	3300009192	Marine	MSEFMRILVATGEAKSREEHQALREDLCAHVFSQRGEFLEPYFD*
Ga0114955_10009842	3300009410	Marine	MSDFMRILVATSEAKFREEHEAFREDICAHAFAQRGQLLDPYVE*
Ga0114955_10041624	3300009410	Marine	MSEFMRILMATGEHKSREEHAALRKNLCGHVFSQRGEFLAPYLD*
Ga0114955_10044557	3300009410	Marine	MSELMRILMATGEAQSVAEHQALHDDLCAHDFAQRGELLDPYVD*
Ga0114955_10098632	3300009410	Marine	MSEFMRILVATGDAKSREEHKSLGEDLCAHVFAQRGECLEPYLD*
Ga0114955_10118634	3300009410	Marine	MHIFMATGEATSVAEHQALRDDLCAHVFAQRGELLEPYVD*
Ga0114955_10168161	3300009410	Marine	MCEFMRILMTTGEAKSREEHAALREDPCAHVFAQRGEFLEPYLD*
Ga0114955_10181872	3300009410	Marine	MSEFMRILVATGEAKCREEHEALREDLCAHVFAQRGALLDPYVD*
Ga0114955_10217631	3300009410	Marine	MATGEVESREKHAVLREDLCAHVFPQRGEFLVPYLD*
Ga0114955_10297902	3300009410	Marine	MSEFMRILMATGEAKSREEHAALREDLCAHVFAQRGEFLEPHLD*
Ga0114955_10333352	3300009410	Marine	MSEFMRILVATGEAKCREEHEALREDRCAHVFAQRGELLDPYVD*
Ga0114955_10337372	3300009410	Marine	MSAFMRILMATGEAKSVAEHQALRDDLCAHVFAQRGELLEPYVD*
Ga0114955_10872511	3300009410	Marine	MSEFMRILMATGEAKSREEHAALREDLCAHVFAQLGEFLEPYLD*
Ga0115029_10042018	3300009415	Marine	MSAFMRILMATGETKSQEEHAALREDLCAHAFAQRGEFLEPYLD*
Ga0115029_10071029	3300009415	Marine	MSEFLRILMATGEAKSVAEHQALRDDLCAHDFAQRGELLEPYAD*
Ga0115029_10101175	3300009415	Marine	MRILVATGEAKCREEHEALSEDIGAHVFPQRGKLLDSYVD*
Ga0115029_10109682	3300009415	Marine	VAPMSDFMRILVATGEAKSRKEHEAICEDFCGHVFAQRGELPDPYVD*
Ga0115029_10479681	3300009415	Marine	MSEFMRILVATGEAKSQEEHQALREDLCAHVFAQRGELLDLYVD*
Ga0115029_10537952	3300009415	Marine	MSEFMRILMATGEAKSREGHAALREDLCAHVFSQRGEFLAPYLD*
Ga0115029_10754052	3300009415	Marine	MSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGELLEPYLD*
Ga0115029_10792922	3300009415	Marine	MSEFMRILVATGEAKSREEHEALREGLCAHVFAQRGELLDPYVD*
Ga0115029_10935801	3300009415	Marine	MSEFMRILVAMGEAKSREEHKALREDLCAHVFAQRGEFLEPYVD*
Ga0115029_11530551	3300009415	Marine	MRILMAMGEAKSVAKHKALRDDLCAHDFAQRGELLEPYVD*
Ga0115029_11711061	3300009415	Marine	MATGEAKSAAEHKALRDDLCAHVFAQRGELLEPYVD*
Ga0115029_11830301	3300009415	Marine	MRILMATGEAKSVAEHKALRDDLCAHVFAQRDELLEPYVD*
Ga0115029_11930891	3300009415	Marine	MSEFMQILMATGEAKSREEHAALREDVCAHVFSQRGEFLAPYLD*
Ga0114953_10089862	3300009417	Marine	MSEFMRILVATGETKCREEHETIREDRCAHVFAQRGELQDPYVD*
Ga0114953_10159435	3300009417	Marine	MRILVATGGAKFREENEALRDVLCAHVFAQRGELLDPYVD*
Ga0114952_10765562	3300009421	Marine	MSEFMRILMATGEAKSLAEHQALRDDLCAHVFAQRGELLEPYVD*
Ga0114952_10776641	3300009421	Marine	MSKFMRILVATGETKCREEHEALREDLCAHVFAQRGDLLSPYVD*
Ga0114952_10805652	3300009421	Marine	MSDFMRILMATGEAKSREEHAALREDLCAHVFAQRGVFLEPYLD*
Ga0114952_11750501	3300009421	Marine	MSEFMRILVSTGEAKSREEHQALREDLCAHVFAQRGEFLEPYVD*
Ga0114952_12693361	3300009421	Marine	GAAAVAPMSEFMRILMATGEAKSREEHAALRQDLCAHVFSQRGEFLAPYLD*
Ga0115031_10046766	3300009439	Marine	MSEFMRVLVATGEAKSREEHRALREDLCAHVFAQRGEFLEPYVD*
Ga0115031_10097244	3300009439	Marine	MSELMRILMATGEAKSREEHAALRQDLCAHVFSQRGEFLAPHLD*
Ga0115031_10968672	3300009439	Marine	MRILMAMGEAKSFAKHKALRDDLCAHDFAQRGELLEPYVD*
Ga0114956_10285714	3300009446	Marine	MRILMATGEAKSVAEHQALRDDLCAHDFAQRGELLEPYVD*
Ga0114956_11705852	3300009446	Marine	MSEFMRILVATGKAKCRKEHEALREDLYAHVFAQRRDLLDPYAD*
Ga0114956_12580751	3300009446	Marine	MATGEAKYVAEHKALREDLCAHVFPQRGELLEPYVD*
Ga0209093_10147342	3300027009	Marine	MRILMATGEAKSVAEHQALRDDLCAHVFAQRGELLEPYVD
Ga0209093_10148342	3300027009	Marine	MSAFLGLMVSTGETTSLEEHQALREDLRAHVFAQRGEFLKPCLDCFTFE
Ga0209093_10184272	3300027009	Marine	MSEFMRIFVATGEAKSREEHQALREDLCAHVFSQRGEFLKPYVD
Ga0209295_10007662	3300027028	Marine	MRILVATSEAKFREEHEAFREDICAHAFAQRGQLLDPYVE
Ga0209295_10030292	3300027028	Marine	MSELMRILMATGEAQSVAEHQALHDDLCAHDFAQRGELLDPYVD
Ga0209295_10208931	3300027028	Marine	MSGFIPTLMATGEVESREKHAVLREDLCAHVFPQRGEFLVPYLD
Ga0209295_10343011	3300027028	Marine	MSEFMRILMATGEAKSREEHAALREDLCAHVFSQRGEFLAPYLD
Ga0209295_10458831	3300027028	Marine	PAVAAAAVAPMSEFMRILVATGDAKSREEHKSLGEDLCAHVFAQRGECLEPYLD
Ga0209303_10058716	3300027262	Marine	MSEYTRILVAIGEPKCREENEALREDLCAHVFAQRSALLHVYVD
Ga0209303_10078023	3300027262	Marine	VAPMSDFMRILVATGEAKSRKEHEAICEDFCGHVFAQRGELPDPYVD
Ga0209303_10233361	3300027262	Marine	MRILVATGEAKCREEHEALSEDIGAHVFPQRGKLLDSYVD
Ga0209303_10263123	3300027262	Marine	MSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGELLEPYLD
Ga0209303_10302833	3300027262	Marine	MSEFMRILVATGEAKSREEHQALREDLCAHVFAQRGEFLEPYVD
Ga0209303_10322542	3300027262	Marine	MSEFMRILMATGEAKSREEHAALRQDLCAHVFSQRGEFLAPYLD
Ga0209303_10510912	3300027262	Marine	MSEFMRILVATGEAKSREEHEALREGLCAHVFAQRGELLDPYVD
Ga0209303_10618042	3300027262	Marine	MSEFMRILVATGEAKCREEHEALREDLCAHVFAQRGDLLSPYVV
Ga0209303_10676751	3300027262	Marine	MSEFMRILVAMGEAKSREEHKALREDLCAHVFAQRGEFLEPYVD
Ga0209303_10800811	3300027262	Marine	AVAPMSEFMRILVSTGEAKSREEHQALREDLCAHVIAQRGEFLEPYVD
Ga0209186_10195064	3300027325	Marine	VAPISEFMRILMVTGKAKSVAEHQVLRDDLCAHVFAQRGELLEPYVD
Ga0209186_10238194	3300027325	Marine	MSEFMRILMATGEAKSREEHAALREDLCAHVFSQRGEFL
Ga0209186_10335821	3300027325	Marine	VAPMSGFIPILMATGEVKSREKHAVLREDLCAHVFPQRGEFLVPYLD
Ga0209185_10944702	3300027498	Marine	MATGEAKSVAEHKALRDDLCAHVFAQRGELLEPYVD
Ga0209185_11035902	3300027498	Marine	AAVAPMSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGEFLEPYVD
Ga0209185_11346221	3300027498	Marine	PALGAAAVAPMSEFMRILMATGEAKSREEHAALRQDLCAHVFSQRGEFLAPYLD
Ga0209187_100305715	3300027509	Marine	MSEFMRILMATGEAKSVAEHQALRDDLCAHDFAQRGELLEPYVD
Ga0209187_100592711	3300027509	Marine	VAPMSDFMRILVATGEAKSRKEHEAICENFCGHVFAQRGELPDPYVD
Ga0209187_10066098	3300027509	Marine	MSEFMRILVATGEAKSREEHEALREDLYAHVFAQRGELLDPYVD
Ga0209187_10126094	3300027509	Marine	AAVAPMSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGEFLEPYLD
Ga0209187_10537682	3300027509	Marine	AAVAPMSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGELLEPYLD
Ga0209187_10575022	3300027509	Marine	MSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGE
Ga0209187_10593141	3300027509	Marine	MSEFMRILMATGETKSQEEHAALREDLCAHAFAQRVEFLEPYLD
Ga0209187_10595472	3300027509	Marine	MRILMATGDAKSVAEHKALRDNLCAHVFAQRGELLEPYVD
Ga0209187_10608932	3300027509	Marine	MSEFMRILVATGEAKSQEEHQALREDLCAHVFAQRGELLDPYVD
Ga0209187_10956011	3300027509	Marine	ATGEAKSVAEHKALRDDLCAHVFAQRGELLEPYVD
Ga0209831_10146734	3300027554	Marine	VAAAAVAPMSEFMRVLVATGEAKSREEHRALREDLCAHVFAQRGEFLEPYVD
Ga0209831_10217931	3300027554	Marine	RPALGAAAVARMSEFMRILMATGEAKSREEHAALRQDLCAHVFSQRGEFLAPYLD
Ga0209831_10245222	3300027554	Marine	MATGDAKSKAKHQALRDDLCAHVFAQRGELLEPYID
Ga0209831_10271651	3300027554	Marine	PPAVGAAGVAPMSEFMRILEATGEAKCREEHEALREDLCAHVFTQRGDLLSPYVD
Ga0209831_10469942	3300027554	Marine	AVAPMSEFMRILVATGEAKSREEHKALREDLCAHVFAQRGELLEPYLD
Ga0209831_10759342	3300027554	Marine	MRILMAMGEAKSFAKHKALRDDLCAHDFAQRGELLEPYVD
Ga0209828_10622081	3300027623	Marine	MSEFMRILVATGETKCREEHEALREDLCAHVFAQRGDLLSPYVD
Ga0209828_11178881	3300027623	Marine	AVGVAPMSEFMRILVATGEAKCREQHEALREDLCAHVFAQRGELLDPYVD
Ga0209828_11616751	3300027623	Marine	MSAFMRILMATGETKSQEEHAALREDLCAHAFAQRGEFLEPYLD
Ga0209828_11633781	3300027623	Marine	MATGEAKYVAEHKALREDLCAHVFPQRGELLEPYVD
Ga0209828_11709961	3300027623	Marine	MSEFMRVLVATGEAKSREEHRALREDLCAHVFAQRGEFLEPYVD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F074327

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences