Metagenome / Metatranscriptome Family F074428

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074428
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	52 residues
Representative Sequence	VSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDASRKYVARVG
Number of Associated Samples	17
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	77.78 %
% of genes near scaffold ends (potentially truncated)	5.88 %
% of genes from short scaffolds (< 2000 bps)	11.76 %
Associated GOLD sequencing projects	11
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.15

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (94.958 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater (92.437 % of family members)
Environment Ontology (ENVO)	Unclassified (92.437 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (92.437 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 0.00% Coil/Unstructured: 100.00%
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Predicted 3D Structure

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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.15
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.15
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF00504	Chloroa_b-bind	1.68
PF03953	Tubulin_C	0.84
PF02338	OTU	0.84
PF01476	LysM	0.84
PF07727	RVT_2	0.84

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
All Organisms	root	All Organisms	4.20 %
Rhodophyta	phylum	Rhodophyta	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
cellular organisms	root	All Organisms → cellular organisms	4.20 %
Florideophyceae	class	Rhodophyta → Florideophyceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	3.36 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %
Rhodymeniophycidae	subclass	Rhodophyta → Florideophyceae → Rhodymeniophycidae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.52 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %
Rhodymeniophycidae	subclass	Rhodophyta → Florideophyceae → Rhodymeniophycidae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	2.52 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %
Rhodymeniophycidae	subclass	Rhodophyta → Florideophyceae → Rhodymeniophycidae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	2.52 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %
Rhodymeniophycidae	subclass	Rhodophyta → Florideophyceae → Rhodymeniophycidae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	2.52 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %
Rhodymeniophycidae	subclass	Rhodophyta → Florideophyceae → Rhodymeniophycidae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	2.52 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %
Rhodymeniophycidae	subclass	Rhodophyta → Florideophyceae → Rhodymeniophycidae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
unclassified Verrucomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae	2.52 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %
Rhodymeniophycidae	subclass	Rhodophyta → Florideophyceae → Rhodymeniophycidae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	94.96 %
Verrucomicrobiaceae bacterium TMED86	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium TMED86	2.52 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %
Rhodymeniophycidae	subclass	Rhodophyta → Florideophyceae → Rhodymeniophycidae	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300007516\|Ga0105050_10138379	Not Available	1566	Open in IMG/M
3300007519\|Ga0105055_10023821	All Organisms → cellular organisms → Bacteria	6880	Open in IMG/M
3300007519\|Ga0105055_10027382	Not Available	6349	Open in IMG/M
3300007519\|Ga0105055_10036775	Not Available	5357	Open in IMG/M
3300007519\|Ga0105055_10075166	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium TMED86	3570	Open in IMG/M
3300007519\|Ga0105055_10132595	Not Available	2554	Open in IMG/M
3300007519\|Ga0105055_10229147	Not Available	1794	Open in IMG/M
3300007519\|Ga0105055_10926423	Not Available	640	Open in IMG/M
3300007520\|Ga0105054_10123831	Rhodophyta → Florideophyceae → Rhodymeniophycidae	2616	Open in IMG/M
3300007520\|Ga0105054_10668626	Not Available	788	Open in IMG/M
3300007520\|Ga0105054_11001428	Not Available	581	Open in IMG/M
3300007523\|Ga0105052_10030071	Not Available	4038	Open in IMG/M
3300007523\|Ga0105052_10101003	Not Available	1983	Open in IMG/M
3300007523\|Ga0105052_10183044	Not Available	1418	Open in IMG/M
3300007523\|Ga0105052_10578773	Not Available	721	Open in IMG/M
3300007722\|Ga0105051_10013988	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium TMED86	7331	Open in IMG/M
3300007722\|Ga0105051_10547067	Not Available	854	Open in IMG/M
3300027832\|Ga0209491_10029476	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium TMED86	5710	Open in IMG/M
3300027832\|Ga0209491_10034548	All Organisms → cellular organisms → Eukaryota	5201	Open in IMG/M
3300027832\|Ga0209491_10224930	Not Available	1568	Open in IMG/M
3300027832\|Ga0209491_10290399	Not Available	1279	Open in IMG/M
3300027983\|Ga0209284_10031806	Not Available	3060	Open in IMG/M
3300027983\|Ga0209284_10043647	Not Available	2504	Open in IMG/M
3300027983\|Ga0209284_10072987	Not Available	1849	Open in IMG/M
3300027983\|Ga0209284_10152575	Not Available	1211	Open in IMG/M
3300032462\|Ga0335396_10031007	Not Available	3751	Open in IMG/M
3300032462\|Ga0335396_10293640	Not Available	1060	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	99.16%
Host-Associated	Host-Associated	0.84%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	99.16%
Human	Host-Associated → Human	0.84%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	92.44%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	6.72%
Digestive System	Host-Associated → Human → Digestive System	0.84%

Habitat	Taxonomy	Distribution
Ice	Environmental → Aquatic → Freshwater → Ice	92.44%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	6.72%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.84%

Habitat	Taxonomy	Distribution
Glacial Lake	Environmental → Aquatic → Freshwater → Ice → Glacial Lake	92.44%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	6.72%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.84%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater → Ice → Glacial Lake → Freshwater	92.44%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	5.88%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.84%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300007516	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01	Environmental	Open in IMG/M
3300007519	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03	Environmental	Open in IMG/M
3300007520	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (megahit assembly)	Environmental	Open in IMG/M
3300007522	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01	Environmental	Open in IMG/M
3300007523	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03	Environmental	Open in IMG/M
3300007722	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (megahit assembly)	Environmental	Open in IMG/M
3300011188	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Filla 1 #563	Environmental	Open in IMG/M
3300012037	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #496	Environmental	Open in IMG/M
3300012269	Saline lake microbial communities from Rauer Islands, Antarctica - Metagenome Hop E1 #497	Environmental	Open in IMG/M
3300017365	Metatranscriptome of marine eukaryotic communities from Ross Sea in marine media K with soil extract, 1 C, 36 psu salinity and 367 ?mol photons light - Geminigera sp. Caron Lab Isolate (MMETSP1102)	Host-Associated	Open in IMG/M
3300023230	Saline water microbial communities from Ace Lake, Antarctica - #1692	Environmental	Open in IMG/M
3300027832	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-02 (SPAdes)	Environmental	Open in IMG/M
3300027848	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-01 (SPAdes)	Environmental	Open in IMG/M
3300027976	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-01 (SPAdes)	Environmental	Open in IMG/M
3300027983	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-03 (SPAdes)	Environmental	Open in IMG/M
3300032435	Freshwater microbial communities from Lake Bonney liftoff mats and glacier meltwater in Antarctica - BON-03 (spades assembly)	Environmental	Open in IMG/M
3300032462	Freshwater microbial communities from Lake Fryxell liftoff mats and glacier meltwater in Antarctica - FRY-02 (spades assembly)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0105050_101383792	3300007516	Freshwater	LSSGKVCKEGLPKVKLEQEKEESWEGSAKKVAEGSDASRKYVAHVGLKLDVALAVRI*
Ga0105050_104022691	3300007516	Freshwater	VSCGKVCEEGLPKVKLEQEGEESAKKVAAGSDASRKYMARVGLKLEVALAVGV*
Ga0105050_104107431	3300007516	Freshwater	VSCGKVCEEGLPKVKLEQEGEESLEESVKKVAEGSDASRKYVGRVGLKLEVVLAVGV*
Ga0105050_104872552	3300007516	Freshwater	VSCEKVCEEGLPKVKLEQQGEESWEGSAKKVAEGSDASRKYVARVG*
Ga0105050_107458652	3300007516	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDASRKYVARVG*
Ga0105055_100238212	3300007519	Freshwater	VSCGKVCEEGLPKVKLEQEWEESWEGSAKKVAEGSDASKKYVARVD*
Ga0105055_100273827	3300007519	Freshwater	VSCGKVREEGLPKVKLEQEGEESWEGSEKKVAEGSDASRKYVARVGFKLEVVLAVGV*
Ga0105055_100367757	3300007519	Freshwater	VSCGKVCEEGLPKVNLEQEGDESWEGSAKKIAEGADVSRKYVARVGLKLEVALAVGV*
Ga0105055_100730522	3300007519	Freshwater	VCEEGLPKVKLQHEGEESEGSAEKVAEGSDASRQHVARVGLKLQIVLAVGV*
Ga0105055_100751661	3300007519	Freshwater	VSCGNVCEEGLPKVKLEHEGEESWEGSAKKVAEGSDASRKYVARFGLKLEVALVVGV*
Ga0105055_101325951	3300007519	Freshwater	EGLPKVKLEQEGEESWEGSAKKVAEGSDASRRYVARVGLKLEVALAVGV*
Ga0105055_102291472	3300007519	Freshwater	MVCEEGLPRVKLEQEGEESLERSAKKVAEGSDASRKYVARVG*
Ga0105055_102591691	3300007519	Freshwater	VSCGRVCEEGLPKVKLEQAGEESWERSAKKVAEGSDASRKYVAHVG*
Ga0105055_106587881	3300007519	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEESAKKVAEGSDASRQYVACVD*
Ga0105055_107061271	3300007519	Freshwater	VFCGKVCEEGLPKVKLEREGEESWEGSAKKVAEGSDASRKYVARVGLKLEVALVVGV*
Ga0105055_107146151	3300007519	Freshwater	VSCGKVYEEGLPKVTLEQEGEESGEWSAKKVAEGSDASRKYVARVGFKLEVVLAV
Ga0105055_107420912	3300007519	Freshwater	VSCGKVCEESLPKVKLEQEGEESWEGSAKKVAEGSDASRKYVARVGLKLEIALAVGV*
Ga0105055_108887422	3300007519	Freshwater	VSCGKVCEGGLPKVKLEQEGEESWEGSAKKVAEGSDASRKHVARGGLKFEVALAVGV*
Ga0105055_109264231	3300007519	Freshwater	VSCGKVCEQGLPKVNLEKEGKESWERSAKKVAEGSDASRKYVALVG*
Ga0105055_110090381	3300007519	Freshwater	VSCGKVCEEGLPKVNLEQEGEESWEGSAKKVAEGSDASRQYVARVGLKLDVALAVGV*
Ga0105054_101114035	3300007520	Freshwater	VCEEGLPKVNLEQEGEESWEGSAKKVAEGSDASRKYVAHVWLKLEVALAVGV*
Ga0105054_101238314	3300007520	Freshwater	VSCGKVCEEGLPNVKLEQEGEESWEGSAKKVAEGSDASRKYVARVG*
Ga0105054_102098901	3300007520	Freshwater	LSSGKVCKEGLPKVKLEQEKEESWEGSAKKVAEGSDASRKYVAHVGLKLDVALAVRV*
Ga0105054_106178812	3300007520	Freshwater	VLCGKVCEESLPKVKLEREGEESWEGSAKKVAEGSDASRKYVARVGLKLEVALVVGV*
Ga0105054_106374491	3300007520	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGPAKKVAEGADASRKYVARVGLKLDVALAVGV*
Ga0105054_106686261	3300007520	Freshwater	VSCGKVSEEGLPKQEGEESWEGSAKKVAEGSDASRKCVARVWLKLEVALAVGV*
Ga0105054_106813172	3300007520	Freshwater	EEGLPKVKLEQEGEESWEGSAKKVAKGSDARRKYVARVGLS*
Ga0105054_107360971	3300007520	Freshwater	VSCGKVCEEGLPKVNLEWQGEESWEGSAKKVAEGSDASRKYVARVG*
Ga0105054_110014282	3300007520	Freshwater	VSCGKVCEEGLPKVKLEQEGEGSAKKVAEGAEASRKYMARVGLKLE
Ga0105053_111225661	3300007522	Freshwater	LEQEGEESWEGSMKKVAIGSDLTRKYVSHVGLKLEVVLAVRV*
Ga0105053_112163001	3300007522	Freshwater	KVKLEQEGEVSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDASRKYVARVGLKSDIALAVGV*
Ga0105052_100300714	3300007523	Freshwater	VSCGKVCEEGLPNVNLEQEGEESWDGSPKKVAEGSDASRNYVARVG*
Ga0105052_100891182	3300007523	Freshwater	LSYGKVREEGLPKVKLEQEREESWEGSAKKVAEGSDVNRK*
Ga0105052_101010034	3300007523	Freshwater	VSCGKVCDQGLPSFKLEHEGEESWEGSAKKVAEGSDASRKYVARVGLKLEVALVVGV*
Ga0105052_101442672	3300007523	Freshwater	VSCGKVCEESLPKVKLEQEEEESWEGSAKKVDEGSDANRKYVARVG*
Ga0105052_101830443	3300007523	Freshwater	EEGLPKVKLEQEGEESWEGSAKKVAEGSDASRKYAARVGLKLEVALAVRV*
Ga0105052_102428011	3300007523	Freshwater	VSCRKVCEEGLLKVKLEQEGEESWEGSAKKVDEGSDASRKYVARVGLKLEVALAVGV*
Ga0105052_104359993	3300007523	Freshwater	VCEEGLPKVKLEQEGEESWEGSAKRVAEGPDARRKYVARFGLN*
Ga0105052_104607891	3300007523	Freshwater	MVCEEGLPKVKLEQEGEESWEGSAKKVAQGSDASRKYVARVG*
Ga0105052_104688911	3300007523	Freshwater	CSKVKLEQEGEVSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAAGSDASRKYLARIS*
Ga0105052_105787731	3300007523	Freshwater	QEGEVSCGKVCEEGLPKVKLEQEGEESWEGSAQKVAEGSDASRKYVAHVGLKLEVELAVGV*
Ga0105052_106074392	3300007523	Freshwater	EQGGEVSWGKVCEKGLPKVKLKQEVGKEGSDASRKYVARVGLKLDVALVVLV*
Ga0105052_109481341	3300007523	Freshwater	VSCGKVCEEVLPKVKLEQKGEESWEGSAKKVAEGSDASRKYVARVGLK
Ga0105052_109948581	3300007523	Freshwater	LLSLFASLSLSCGKVCEEGLPKVKLEQEGEEFREESAKKVAEGSDASRKYMARVGLKFEVALAVGV*
Ga0105051_100113686	3300007722	Freshwater	VSCGKVCEEGLSKVKLEQEAEESWEGSAKQVAERSDASRKYVVRVG*
Ga0105051_100139882	3300007722	Freshwater	VSCGKVCDQGLPSFKLEHEGEESWEGSAKKVAEGSDASRKYAARVGLKLDVALVVGV*
Ga0105051_100605461	3300007722	Freshwater	MVCEEGLPEVKLEQEGEESWVGSAKKVAEGSDASRKYVERVR*
Ga0105051_100745162	3300007722	Freshwater	VSCGKFCEEGLPKVKLEQEGEESLEESVKKVAEGSDASRKYVGRVGLKLEVVLAVGV*
Ga0105051_102294591	3300007722	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDARRKYVARVGLS*
Ga0105051_102326081	3300007722	Freshwater	VSCGKVCEEGLPKVKLEQEGEESAKKVAEGSDASRKYMARVGLKLEVALAVGV*
Ga0105051_103314333	3300007722	Freshwater	VSCGKVCEEVLPKVKLEQKGEESWEGSAKKVAEGSDASRKYVARVGLKLEVALAVGV*
Ga0105051_103733971	3300007722	Freshwater	VSCRKVCEEGLLKVKLEQEGEESWEGSAKKVDEGSDASRKYVARVG
Ga0105051_104003131	3300007722	Freshwater	LSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGPDARRKYVARFGLN*
Ga0105051_104589091	3300007722	Freshwater	VSCGNVCEEGLPKVKLEHEGEESWEGSAKKVAEGSDASRKYVARFVLKLEVALVVGV*
Ga0105051_105470672	3300007722	Freshwater	VSCGQVCEEGLPKVKLEQEGEESWEGSAKKVVEGSDASRKYVARVGLKLEVALAVGG*
Ga0105051_107046142	3300007722	Freshwater	EQEGEVSCGKVCEEGLPKVKLEQEGEESWEGSAQKVAEGSDASRKYVAHVGLKLEVELAVGV*
Ga0105051_107051331	3300007722	Freshwater	LFERTKVKFEQEGEVSCGKVCEESAKKVTEGSDASRKYVAHVGLN
Ga0105051_108037642	3300007722	Freshwater	SCGKVCEEGLPKVKLEHEGEESREESAKKVAEGSDASRKYMARVGLKFEVALAVGI*
Ga0105051_108441311	3300007722	Freshwater	VSCGKVCEESLPKVKLEQEREESWEGSAKKVAEGSDASRKYVARVELKLEVALAVGV*
Ga0105051_110640311	3300007722	Freshwater	LLSLFASLSLSCGKVCEEGLPKVKLEHEGEESREESAKKVAEGSDASRKYMARVGLKFEVALAVGV*
Ga0105051_111142411	3300007722	Freshwater	VSCGKVREEGLPKVKLEQEGEESWEGSAKKVAEGLDA
Ga0105051_112013301	3300007722	Freshwater	EGEVSCGKVCEEGLPKVKLKQEGEESWEGSAKKVAAGSDASRKYLARIS*
Ga0105051_113531831	3300007722	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDASRKCVALVGLKLEVALAVGV*
Ga0136587_10564941	3300011188	Saline Lake	VSCGKVCEEGLPKVKLEQEWEESWEGSAKKVAEGSDASKKYVARVG*
Ga0136559_10165032	3300012037	Saline Lake	VSCGKVCEESLPKVKLEQEGEESWKGSAKKVAEGSDASRKYVARVGLKLEIALAVGV*
Ga0136559_10513422	3300012037	Saline Lake	PKVKLEQEGEESWEGSMKKAAVRSDATRKYVSHVGLKLEVVLAVGV*
Ga0136559_10967411	3300012037	Saline Lake	VSCGRVGEEGLPKVKLEQAGEESWERSAKKVAEGSDASRKYVAHVG*
Ga0136559_11963361	3300012037	Saline Lake	CGKVCEEGLPKVKLEREGEESWKGSAKKVAEGSDASRKYVAHVGLKLDVALPVGV*
Ga0136559_12495431	3300012037	Saline Lake	VSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDASRKYVARVG
Ga0136560_10599132	3300012269	Saline Lake	EQEGEGSCGKVCEEGLPKVKLEQEGEGSAKKVAEGAEASRKYMARVGLKLEVARARDGAGIP*
Ga0186251_10234463	3300017365	Host-Associated	EVSCGKVCEEGLPKVKLEQEGEGSAKKVAEGAEASRKYMARVGLKLEVARARDGAGIP
Ga0222709_10499312	3300023230	Saline Water	SKVKLEQEGEGSCGKVCEEGLPKAKLEQEGEGSAKKVAEGSDASRK
Ga0209491_1002947613	3300027832	Freshwater	VSCGKVCEEGLPKVNLEQEGKESWEGSAKKVAEGSDASRKYVARVGLN
Ga0209491_100345483	3300027832	Freshwater	VSCGKVCEEGLPNVKLEQEGEESWEGSAKKVAEGSDASRKYVARVG
Ga0209491_100594783	3300027832	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEESAKKVAEGSDASRKY
Ga0209491_100654923	3300027832	Freshwater	VSCGNVCEEGLPKVKLEHEGEESWEGSAKKVAEGSDASRKYVARFGLKLEVALVVGV
Ga0209491_100676013	3300027832	Freshwater	VCEEGLPKVKLQHEGEESEGSAEKVAEGSDASRQHVARVGLKLQIVLAVGV
Ga0209491_101146911	3300027832	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGPAKKVAEGADASRKYVARVGLKLDVALAVGV
Ga0209491_101949231	3300027832	Freshwater	VSCGRVCEEGLPKVKLEQAGEESWERSAKKVAEGSDASRKYVAHVG
Ga0209491_102083591	3300027832	Freshwater	VSCGKVCEEGLPKVKLKQEGEESWEGSAKQVVEGSDTSRKYVARVG
Ga0209491_102249303	3300027832	Freshwater	VSCGMVCEEGLPRVKLEQEGEESLERSAKKVAEGSDASRKYVARVG
Ga0209491_102903993	3300027832	Freshwater	VSCGKVCEESLPKVKLEQEGEESWEGSAKKVAEGSDASRKYVARVGLKLEIALAVGV
Ga0209491_104292342	3300027832	Freshwater	VSCGKVREEGLPKVKLEQEGEESWEGSEKKVAEGSDASRKYVARVGFKLEVVLAVGV
Ga0209491_105608441	3300027832	Freshwater	VSCGKVCEEGLPKVNLEQEGDESWEGSAKKIAEGADVSRKYVARVGLKLEVALAVGV
Ga0209491_105872651	3300027832	Freshwater	VLCGKVCEESLPKVKLEREGEESWEGSAKKVAEGSDASRKYVARVGLKLEVALVVGV
Ga0209491_107620751	3300027832	Freshwater	VSCGKVCEEGLPKVKLEQDREESWEGSAKKVTEGSDATRKYVARVGLN
Ga0209390_100817312	3300027848	Freshwater	VSCEKGCEEGLPKVKMKQEGEESWKEGSDASRKYVARVGLKLEVALVVRV
Ga0209390_101500223	3300027848	Freshwater	VSCGKVCEEGLPKVKLEQEGQETWEGSANKVAEGSDASRKYVARDGLKLEVALAVGV
Ga0209390_103821371	3300027848	Freshwater	VSCGKVCEEGLPKVKLQQEGEESWEGSAKKVAEGSDASRKYLARVG
Ga0209390_103929521	3300027848	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGSAKKVDEGSDASRKYVARVG
Ga0209702_103672201	3300027976	Freshwater	VSCGKVSEEGLPKQEGEESWEGSAKKVAEGSDASRKCVARVWLKLEVALAVGV
Ga0209702_104266471	3300027976	Freshwater	EQEGEVSCGKVCQEGLPKVKLEQEGEETWEGSAEKVAEGSDASR
Ga0209284_100318063	3300027983	Freshwater	VSCGKVCEEGLPKVNLEQEGEESWEGSAKKVAEGSDASRQYVARVGLKLDVALAVGV
Ga0209284_100436475	3300027983	Freshwater	VSCEKVCEEGLPKVKLEQQGEESWEGSAKKVAEGSDASRKYVARVG
Ga0209284_100729872	3300027983	Freshwater	VSCGKVCDQGLPSFKLEHEGEESWEGSAKKVAEGSDASRKYVARVGLKLEVALVVGV
Ga0209284_101201071	3300027983	Freshwater	LKQEGEVSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDARRKYVACVGLS
Ga0209284_101525753	3300027983	Freshwater	REEGLPKVKLEQEGEEFWEGSAKKVAEGLDASRKYVARVG
Ga0209284_102138012	3300027983	Freshwater	VSCRKVCEEGLLKVKLEQEGEESWEGSAKKVDEGSDASRKYVARVGLKLEVALAVGV
Ga0209284_102763611	3300027983	Freshwater	VSCGKVCEEGLPEDKLEQEGEESWVGSAKKVAEGSDASRKYVERVR
Ga0209284_103592502	3300027983	Freshwater	VSCGKVCEESLPKVKLEQEEEESWEGSAKKVDEGSDANRKYVARVG
Ga0209284_103884551	3300027983	Freshwater	VSCGKVCEEVLPKVKLEQKGEESWEGSAKKVAEGSDASRKYVARVGLKMEVALAVGV
Ga0209284_106204801	3300027983	Freshwater	VSCGKVCEEGLPKVKLEQEGEESLEESVKKVAEGSDASRKYVGRVGLKLEVVLAVGV
Ga0335398_102043801	3300032435	Freshwater	VSCGKVCEGGLPKVKLEQEGEESWEGSAKKVAEGSDASRKHVARGGLKFEVALAVGV
Ga0335398_102187353	3300032435	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDASRKYVARVGLKSDIALAVGV
Ga0335398_108703041	3300032435	Freshwater	SLFASLSLSCGKVCEEGLPKVKLEQEGEEFREESAKKVAEGSDASRKYMARVGLKFEVALAVGV
Ga0335398_109108282	3300032435	Freshwater	VSCGKVCEEGLPNVNLEQEGEESWDGSPKKVAEGSDASRNYVA
Ga0335396_100310072	3300032462	Freshwater	VSCGKVCDQGLPSFKLEHEGEESWEGSAKKVAEGSDASRKYAARVGLKLDVALVVGV
Ga0335396_100324354	3300032462	Freshwater	VSCGKVCEEGLSKVKLEQEGEESWEGSAKQVAERSDASRKYVVRVG
Ga0335396_100509224	3300032462	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGSAQKVAEGSDASRKYVAHVGLKLEVELAVGV
Ga0335396_100541772	3300032462	Freshwater	VSCGKFCEEGLPKVKLEQEGEESLEESVKKVAEGSDASRKYVGRVGLKLEVVLAVGV
Ga0335396_100772762	3300032462	Freshwater	VSCGKVCEEGLPKVKLEQEGEESAKKVAAGSDASRKYMARVGLKLEVALAVGV
Ga0335396_101212231	3300032462	Freshwater	VSCGKVCEEGLPNVNLEQEGEESWDGSPKKVAEGSDASRKYVARVG
Ga0335396_102537132	3300032462	Freshwater	LLSLFASLSLSCGKVCEEGLPKVKLEHEGEESREESAKKVAEGSNASRKYMARVGLKFEVALAVGI
Ga0335396_102936401	3300032462	Freshwater	SLFASLSLSCGKVCEEGLPKVKLEHEGEESREESAKKVAEGSDASRKYMARVGLKFEVALAVGV
Ga0335396_103906941	3300032462	Freshwater	VSCGMVCEEGLPEVKLEQEGEESWVGSAKKVAEGSDASRKYVERVR
Ga0335396_104394601	3300032462	Freshwater	MVCEEGLPKVKLEQEGEESWEGSAKKVAQGSDASRKYVARVG
Ga0335396_104957411	3300032462	Freshwater	VSCGKVREEGLPKVKLEQEGEESWEGSAKKVAEGLDASRKYVARVG
Ga0335396_105529771	3300032462	Freshwater	VSCGKVCEEVLPKVKLEQKGEESWEGSAKKVAEGSDASRKYVARVGLKLEVALAVGV
Ga0335396_107921921	3300032462	Freshwater	VSCGKVCEEGLPKVKLEQEGEESWEGSAKKVAEGSDARRKYVARVGLS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074428

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences