Metagenome / Metatranscriptome Family F074525

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F074525
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	67 residues
Representative Sequence	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFGRR
Number of Associated Samples	68
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	48.74 %
% of genes near scaffold ends (potentially truncated)	35.29 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	62
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.462 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (24.370 % of family members)
Environment Ontology (ENVO)	Unclassified (46.218 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.185 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 64.58% β-sheet: 0.00% Coil/Unstructured: 35.42%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.48
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.48
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF01844	HNH	4.20
PF04851	ResIII	3.36
PF06537	DHOR	1.68
PF13356	Arm-DNA-bind_3	0.84
PF13545	HTH_Crp_2	0.84
PF09339	HTH_IclR	0.84
PF13727	CoA_binding_3	0.84
PF01381	HTH_3	0.84
PF04392	ABC_sub_bind	0.84
PF04773	FecR	0.84
PF13274	DUF4065	0.84
PF00107	ADH_zinc_N	0.84
PF00816	Histone_HNS	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	1.68
COG2916	DNA-binding protein H-NS	Transcription [K]	0.84
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.46 %
Unclassified	root	N/A	44.54 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.46 %
Unclassified	root	N/A	44.54 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.46 %
Unclassified	root	N/A	44.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	37.82 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	5.04 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → environmental samples	1.68 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	36.97 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.20 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.84 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	32.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.20 %
Xanthomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales	0.84 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.84 %
unclassified Terriglobia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia	0.84 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.20 %
Rhodanobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae	0.84 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.84 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.20 %
Rudaea	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea	0.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.84 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.84 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.54 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	32.77 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.20 %
Rudaea cellulosilytica	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea → Rudaea cellulosilytica	0.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.84 %
Acidobacteriia bacterium SbA2	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	0.84 %
uncultured bacterium RM57	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	0.84 %
uncultured bacterium	species	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000597\|AF_2010_repII_A1DRAFT_10021087	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1786	Open in IMG/M
3300000655\|AF_2010_repII_A100DRAFT_1031799	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	973	Open in IMG/M
3300005332\|Ga0066388_102238819	Not Available	987	Open in IMG/M
3300005332\|Ga0066388_102273511	Not Available	980	Open in IMG/M
3300005332\|Ga0066388_103730388	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	777	Open in IMG/M
3300005332\|Ga0066388_103916081	Not Available	759	Open in IMG/M
3300005332\|Ga0066388_104186412	Not Available	735	Open in IMG/M
3300005332\|Ga0066388_104281598	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	727	Open in IMG/M
3300005332\|Ga0066388_108061484	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	526	Open in IMG/M
3300005332\|Ga0066388_108460566	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	512	Open in IMG/M
3300005363\|Ga0008090_10093242	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1219	Open in IMG/M
3300005445\|Ga0070708_100693593	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	959	Open in IMG/M
3300005468\|Ga0070707_100289523	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1591	Open in IMG/M
3300005468\|Ga0070707_102056446	Not Available	539	Open in IMG/M
3300005471\|Ga0070698_100181556	Not Available	2043	Open in IMG/M
3300005713\|Ga0066905_100252866	Not Available	1355	Open in IMG/M
3300005713\|Ga0066905_101259538	Not Available	663	Open in IMG/M
3300005713\|Ga0066905_102312897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300005764\|Ga0066903_100042595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5386	Open in IMG/M
3300005764\|Ga0066903_100072688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4416	Open in IMG/M
3300005764\|Ga0066903_100320571	Not Available	2474	Open in IMG/M
3300005764\|Ga0066903_100643595	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1851	Open in IMG/M
3300005764\|Ga0066903_101202740	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1407	Open in IMG/M
3300005764\|Ga0066903_101298579	All Organisms → cellular organisms → Bacteria	1359	Open in IMG/M
3300005764\|Ga0066903_102994948	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium	915	Open in IMG/M
3300005764\|Ga0066903_103566177	Not Available	838	Open in IMG/M
3300005764\|Ga0066903_104028056	Not Available	787	Open in IMG/M
3300005764\|Ga0066903_105688128	Not Available	656	Open in IMG/M
3300005764\|Ga0066903_105866622	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	644	Open in IMG/M
3300005764\|Ga0066903_107581617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	559	Open in IMG/M
3300005764\|Ga0066903_107603979	Not Available	558	Open in IMG/M
3300006845\|Ga0075421_101127497	All Organisms → cellular organisms → Bacteria	879	Open in IMG/M
3300006854\|Ga0075425_101255206	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	841	Open in IMG/M
3300006904\|Ga0075424_101283727	Not Available	779	Open in IMG/M
3300009012\|Ga0066710_103969671	Not Available	554	Open in IMG/M
3300009090\|Ga0099827_11541068	Not Available	579	Open in IMG/M
3300009162\|Ga0075423_12665942	Not Available	547	Open in IMG/M
3300009792\|Ga0126374_11005509	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	654	Open in IMG/M
3300010043\|Ga0126380_10029508	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2756	Open in IMG/M
3300010043\|Ga0126380_12070924	Not Available	523	Open in IMG/M
3300010046\|Ga0126384_10511072	Not Available	1037	Open in IMG/M
3300010046\|Ga0126384_10722676	Not Available	884	Open in IMG/M
3300010046\|Ga0126384_11741469	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	590	Open in IMG/M
3300010046\|Ga0126384_12119274	Not Available	540	Open in IMG/M
3300010046\|Ga0126384_12147538	Not Available	536	Open in IMG/M
3300010047\|Ga0126382_10703732	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	848	Open in IMG/M
3300010047\|Ga0126382_11877008	Not Available	566	Open in IMG/M
3300010048\|Ga0126373_10802100	Not Available	1003	Open in IMG/M
3300010048\|Ga0126373_11963086	Not Available	648	Open in IMG/M
3300010358\|Ga0126370_10743597	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	867	Open in IMG/M
3300010358\|Ga0126370_10869268	Not Available	811	Open in IMG/M
3300010360\|Ga0126372_10939520	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	871	Open in IMG/M
3300010360\|Ga0126372_13298992	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	502	Open in IMG/M
3300010361\|Ga0126378_10479665	Not Available	1358	Open in IMG/M
3300010361\|Ga0126378_10774080	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1070	Open in IMG/M
3300010362\|Ga0126377_11386502	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	776	Open in IMG/M
3300010362\|Ga0126377_11672537	Not Available	711	Open in IMG/M
3300010366\|Ga0126379_10670337	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1129	Open in IMG/M
3300010366\|Ga0126379_12553892	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	609	Open in IMG/M
3300010376\|Ga0126381_100189573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2739	Open in IMG/M
3300010376\|Ga0126381_101887132	Not Available	862	Open in IMG/M
3300010398\|Ga0126383_12451885	Not Available	606	Open in IMG/M
3300012189\|Ga0137388_11515629	Not Available	608	Open in IMG/M
3300012200\|Ga0137382_10519334	Not Available	847	Open in IMG/M
3300012971\|Ga0126369_12834387	Not Available	568	Open in IMG/M
3300016270\|Ga0182036_10168189	Not Available	1578	Open in IMG/M
3300016270\|Ga0182036_11130719	Not Available	649	Open in IMG/M
3300016294\|Ga0182041_10018478	All Organisms → cellular organisms → Bacteria	4200	Open in IMG/M
3300016319\|Ga0182033_10236480	Not Available	1476	Open in IMG/M
3300016319\|Ga0182033_10453366	Not Available	1094	Open in IMG/M
3300016341\|Ga0182035_10133985	All Organisms → cellular organisms → Bacteria	1875	Open in IMG/M
3300016357\|Ga0182032_11624185	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	563	Open in IMG/M
3300016371\|Ga0182034_10995483	Not Available	724	Open in IMG/M
3300016404\|Ga0182037_11800537	Not Available	547	Open in IMG/M
3300021560\|Ga0126371_10188500	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2151	Open in IMG/M
3300021560\|Ga0126371_10988221	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	984	Open in IMG/M
3300025910\|Ga0207684_10228563	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1605	Open in IMG/M
3300025910\|Ga0207684_10300677	All Organisms → cellular organisms → Bacteria → environmental samples → uncultured bacterium RM57	1383	Open in IMG/M
3300025910\|Ga0207684_10364926	Not Available	1243	Open in IMG/M
3300025910\|Ga0207684_11095208	Not Available	663	Open in IMG/M
3300027909\|Ga0209382_10686786	All Organisms → cellular organisms → Bacteria	1103	Open in IMG/M
3300031543\|Ga0318516_10323734	Not Available	890	Open in IMG/M
3300031544\|Ga0318534_10799068	Not Available	530	Open in IMG/M
3300031545\|Ga0318541_10052427	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2098	Open in IMG/M
3300031564\|Ga0318573_10700554	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300031572\|Ga0318515_10188995	Not Available	1103	Open in IMG/M
3300031572\|Ga0318515_10311882	Not Available	843	Open in IMG/M
3300031573\|Ga0310915_10003494	All Organisms → cellular organisms → Bacteria	8482	Open in IMG/M
3300031573\|Ga0310915_10059070	All Organisms → cellular organisms → Bacteria	2498	Open in IMG/M
3300031719\|Ga0306917_10650995	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	828	Open in IMG/M
3300031736\|Ga0318501_10345338	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	799	Open in IMG/M
3300031744\|Ga0306918_10048367	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Xanthomonadales → Rhodanobacteraceae → Rudaea → Rudaea cellulosilytica	2811	Open in IMG/M
3300031770\|Ga0318521_10040195	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2357	Open in IMG/M
3300031777\|Ga0318543_10257936	Not Available	778	Open in IMG/M
3300031777\|Ga0318543_10271951	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	757	Open in IMG/M
3300031793\|Ga0318548_10029212	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2406	Open in IMG/M
3300031879\|Ga0306919_10185498	All Organisms → cellular organisms → Bacteria	1538	Open in IMG/M
3300031890\|Ga0306925_10131598	All Organisms → cellular organisms → Bacteria	2684	Open in IMG/M
3300031890\|Ga0306925_11296222	Not Available	724	Open in IMG/M
3300031897\|Ga0318520_10159925	Not Available	1311	Open in IMG/M
3300031942\|Ga0310916_10066985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2796	Open in IMG/M
3300031942\|Ga0310916_10220422	Not Available	1592	Open in IMG/M
3300031942\|Ga0310916_11462172	Not Available	558	Open in IMG/M
3300031946\|Ga0310910_10676896	Not Available	816	Open in IMG/M
3300031954\|Ga0306926_10464970	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1557	Open in IMG/M
3300031954\|Ga0306926_12032029	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	645	Open in IMG/M
3300032041\|Ga0318549_10495670	Not Available	549	Open in IMG/M
3300032052\|Ga0318506_10127112	Not Available	1105	Open in IMG/M
3300032059\|Ga0318533_10360446	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1059	Open in IMG/M
3300032059\|Ga0318533_10929671	All Organisms → cellular organisms → Bacteria	638	Open in IMG/M
3300032063\|Ga0318504_10374791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	677	Open in IMG/M
3300032063\|Ga0318504_10620346	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	520	Open in IMG/M
3300032065\|Ga0318513_10490120	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	601	Open in IMG/M
3300032076\|Ga0306924_10018729	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7313	Open in IMG/M
3300032091\|Ga0318577_10334662	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	724	Open in IMG/M
3300032091\|Ga0318577_10551743	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	548	Open in IMG/M
3300032094\|Ga0318540_10332958	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300032261\|Ga0306920_100431098	All Organisms → cellular organisms → Bacteria	1959	Open in IMG/M
3300033289\|Ga0310914_10671719	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → unclassified Terriglobia → Acidobacteriia bacterium SbA2	931	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.80%
Host-Associated	Host-Associated	4.20%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	95.80%
Plants	Host-Associated → Plants	4.20%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	95.80%
Rhizosphere	Host-Associated → Plants → Rhizosphere	4.20%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	68.91%
Loam	Environmental → Terrestrial → Soil → Loam	26.89%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	4.20%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	26.05%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	20.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.72%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	4.20%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.84%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	24.37%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	23.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	20.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	15.13%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.72%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	4.20%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	2.52%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.84%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000655	Forest soil microbial communities from Amazon forest - 2010 replicate II A100	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009090	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG	Environmental	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012189	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4A metaG	Environmental	Open in IMG/M
3300012200	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_20_16 metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032041	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f22	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
AF_2010_repII_A1DRAFT_100210874	3300000597	Forest Soil	MAANMSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVRAVFYAVVAAVIRLLF*
AF_2010_repII_A100DRAFT_10317991	3300000655	Forest Soil	MSERGDIWLSRGFSVTCIPSAFIGAVTVGMLLGEPNFAIMLFGAVGGLAVGAVFYVVVASVIRLLF
Ga0066388_1022388191	3300005332	Tropical Forest Soil	MAANMREKGDIWRSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVIAGVIRLRL*
Ga0066388_1022735113	3300005332	Tropical Forest Soil	VSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRRLF*
Ga0066388_1037303882	3300005332	Tropical Forest Soil	MSSNAANMSERGDIWLSRGFTVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYAVVAGVIRLLFGRR*
Ga0066388_1039160811	3300005332	Tropical Forest Soil	MSERGDIWDSRAFSVTCILSASIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYAVVASVIRFLF*
Ga0066388_1041864122	3300005332	Tropical Forest Soil	MSERGDIWLSRCFSLTCILSAFIGAATVWMLLGEPDVLMLFGTVGGMMVGAVFYFVAAGVIRLLF*
Ga0066388_1042815981	3300005332	Tropical Forest Soil	MSSSAANMSERGDIWLSRGFSVTCILSAFIGALMVGVVLGEPDVLMLFGAVGGVMVGAVF
Ga0066388_1080614842	3300005332	Tropical Forest Soil	MSERGDIWLSRGFWVTCILSAFIGAMMVGVVLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFSQR
Ga0066388_1084605662	3300005332	Tropical Forest Soil	MLTRFLVLNMSSSAANMNERSDIWLSRGFSVTCILSAFIGALMVGVVLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFSQR
Ga0008090_100932424	3300005363	Tropical Rainforest Soil	GFSVTCILSASIGALTVGMLLGEPDILILFGAVGGVAVGAVFYFVVAGVIRLLF*
Ga0070708_1006935932	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MNEGGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLF*
Ga0070707_1002895232	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSSSAANMSERGDIWLSRGFSITCIVSAFIGALMVGMLLGEPDVLMLFGAVGGAMVGAVFYLVVAAVIRFLF*
Ga0070707_1020564462	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MSERGDIWQSRGFSVACILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYAVVAGVIRRLF*
Ga0070698_1001815562	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MSARGDIWLSRGFSVTCILSAFIGALMVGVLLGEPDVLMLFGAVGGVMVGAVFHFVVAGVIRLLF*
Ga0066905_1002528662	3300005713	Tropical Forest Soil	MSSNAAKHDWRGDIWLSQGFSISCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVLAGVIRLLF*
Ga0066905_1012595382	3300005713	Tropical Forest Soil	LLSRGFSVTCILSAFVGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVVAGVIRRLF*
Ga0066905_1023128972	3300005713	Tropical Forest Soil	MSSNAANMSERDDIWLSRGFSVTCVLSSFIGAVTVGMLLGEPDLAIMLFGAVGGVMVRAAFYFVVAGVIRLLF
Ga0066903_1000425954	3300005764	Tropical Forest Soil	MSERGDIWQSRAFLVTCILSAFIGAVTVGMLLSEPDFAIMLFGAVGGLMVGAVFYVVVAGVIRFLFGRR*
Ga0066903_1000726887	3300005764	Tropical Forest Soil	MSERGDVWLSPGFLVTCILSAFIGAVAVGMLLGEPDFIIMLFGAVGGVMVGAVFYFAVAGVIRRLF*
Ga0066903_1003205714	3300005764	Tropical Forest Soil	MSERGDIWLSRGFSVTCIVSAFIGALMVGMLLGEPDVLMLFGAVGGAMVGAVFYVVVAGVIRRLF*
Ga0066903_1006435951	3300005764	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGAVAVGMLLSQPDFAIMLFGAVGGLMVGAVFYVVVTGVIRLLFRH*
Ga0066903_1012027405	3300005764	Tropical Forest Soil	MSSSVANMSERGDIWLSRGFWVTCILSAFIGAMMVGVVLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFSQR
Ga0066903_1012985792	3300005764	Tropical Forest Soil	MSERGDIWQSRAFSVTCILSAFMGAVAVGMLLSEPDFVIVLFGAVGGLMVGAVFYVVVTSVIRLLFGRR*
Ga0066903_1029949483	3300005764	Tropical Forest Soil	MSERGDIWQSRGLSVACILSAFIGALMVGMLLGEPDVLMLFGAVGGVVIGAVFYFVVAGVIRRLF*
Ga0066903_1035661772	3300005764	Tropical Forest Soil	MSEKGDVWLSRAFSVTCILSAFIGALMVGMLLGEPDVLMLVGAVGGVMVGAAFYVVVAGVIRLLF*
Ga0066903_1040280561	3300005764	Tropical Forest Soil	FSVTCILSGFIGAVTVGMLLGEPDFVIMLFGAVGGLMVGAVFYVVVASVIRLLFGRR*
Ga0066903_1056881282	3300005764	Tropical Forest Soil	MSERGDIWASRGFSVTCIVSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVVTRVIRLLF*
Ga0066903_1058666222	3300005764	Tropical Forest Soil	MSERGEIWLSRDFSVTCILSGFIGAVTVGMLLGEPDFAIMLFGAVGGLAVGAVFYVVVASVIRLLFDRR*
Ga0066903_1075816172	3300005764	Tropical Forest Soil	SRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVSYFVVAGVIRLLFGRR*
Ga0066903_1076039792	3300005764	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGAVTVGMLLGEPDFVIMLFGAVGGLMVGAVFYVVVTSVIRLLFGRRRNSARPARILA*
Ga0075421_1011274971	3300006845	Populus Rhizosphere	MSERGDIWLSRGFSVTCIVSGFIGAVTVGMLLGEPDFVIMLFGAVGGVMVGAVFFFVATGVIRLLFDSEKL*
Ga0075425_1012552062	3300006854	Populus Rhizosphere	WLSRAFWVTGILSGFIGALTVGMLLGEPDFAIMLFGAVGGIMVGAVFFFVVAGVIRLLRGPYRLF*
Ga0075424_1012837273	3300006904	Populus Rhizosphere	MSERGDIWLSRGFSITCIVSAFIGALMVGMLLGQPDVLMLFGAVGGAMVGAVFYLVVAAVIRFLF*
Ga0066710_1039696712	3300009012	Grasslands Soil	MSARGDIWLSRGFSVTCILSAFIGALMVGVLLGEPDVLMLFGAVGGAMVGAVFYLVVAAVIRFLF
Ga0099827_115410681	3300009090	Vadose Zone Soil	MSATGDIWLSRGFSATCILSTFIAALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLF*
Ga0075423_126659421	3300009162	Populus Rhizosphere	AANMSERGDIWLSRGFSITCIVSAFIGALMVGMLLGEPDVLMLFGAVGGAMVGAVFYLVVAAVIRFLF*
Ga0126374_110055091	3300009792	Tropical Forest Soil	MSEGGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVSYFVVA
Ga0126380_100295082	3300010043	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFGRR*
Ga0126380_120709241	3300010043	Tropical Forest Soil	RGDIWLSRGFSVTCILSAFIGALMVGMVLGEPDVLMLFGAVGGVLVGAAFYFVVAGVIRRLF*
Ga0126384_105110723	3300010046	Tropical Forest Soil	MSSNAANMSERDDIWLSRGFSVTYILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLF*
Ga0126384_107226761	3300010046	Tropical Forest Soil	MSERGDIWLSRSFSITCILSAFIGALMVGTLLGEADVLMLFGAVGGVMVGAVFYFVVAGVIRLLF*
Ga0126384_117414691	3300010046	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGVVGGVMVGAVFYFVVAGVIRLLFGRR*
Ga0126384_121192742	3300010046	Tropical Forest Soil	MSERGDIWLSRGFSVTCIVSAFIGAATVGMLLDEPDLIIMLFGAVGGVMVGAVFFVVVAGVIRLLFPRAISL*
Ga0126384_121475381	3300010046	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDLIIMLFGAVGGVMVGAVFFFVVTGVIRLLFRHRETTI*
Ga0126382_107037321	3300010047	Tropical Forest Soil	MSERGDIWQSRGFSVACILSAFIGVLMMGVLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLF*
Ga0126382_118770081	3300010047	Tropical Forest Soil	GDIWLSQGFSISCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAGFFFVVTGVIRLLFRQRETMI*
Ga0126373_108021001	3300010048	Tropical Forest Soil	MREGGDIWLSRGFSVTCILSAFIGAVTVGMLLGEPNFAIMLFGAVGGLAVGAVFYVVVASVIRLLFGRR*
Ga0126373_119630861	3300010048	Tropical Forest Soil	MAANMNEKGDIWLSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVVAGVIRLLF*
Ga0126370_107435971	3300010358	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDLIIMLFGAVGGVMVGAVYFFVVTGVIRLLFRHRETTI*
Ga0126370_108692681	3300010358	Tropical Forest Soil	MSSSVANMSERGDIWLSRGFWVTCILSAFIGAMMVGVVLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFSQRET*
Ga0126372_109395201	3300010360	Tropical Forest Soil	MSSSAANMSERGDIWLSRGFSVTCILSAFIGALMVGVVLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFSQRET*
Ga0126372_132989921	3300010360	Tropical Forest Soil	MRRLTTTPVLKSVNISDGGDIWLSRGFSVTSILSAFIGAVMVGMLLGEPDVLILFGALGGVMVGAVFYVVAVG
Ga0126378_104796653	3300010361	Tropical Forest Soil	MTTACPFCAKNGREQMQQHMSERGDIWLSRGFSVTCILSAFIGALTVGMLLGEPDVLMLFGAVGGVMVGAALYFVVAGVTRLLF*
Ga0126378_107740802	3300010361	Tropical Forest Soil	MREGGDIWLSRGFSVTCIPSAFIGAVTVGMLLGEPNFAIMLFGAVGGLAVGAVFYVVVASVIRLLFDETRPGQCE*
Ga0126377_113865021	3300010362	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYAVVASVIRFLF*
Ga0126377_116725371	3300010362	Tropical Forest Soil	MSERGDIWLSRGFSVTCILCAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLF*
Ga0126379_106703372	3300010366	Tropical Forest Soil	MSERGDIWLSRGFSVTCIPSAFIGAVTVGMLLGEPNFAIMLFGAVGGLAVGAVFYVVVASVIRLLFGRR*
Ga0126379_125538922	3300010366	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDLIIMLFGAVGGVMAGAVFFFVVTGVIRLLFRHRETTI*
Ga0126381_1001895735	3300010376	Tropical Forest Soil	MSERGDIWLSRGFWVTCILSAFIGAMMVGVVLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRRLF*
Ga0126381_1018871322	3300010376	Tropical Forest Soil	WLSQGFSISCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVLAGVIRLLF*
Ga0126383_124518852	3300010398	Tropical Forest Soil	MSERGEIWLSRGFSVTCILSGFIGAVTVGMLLGEPDFVIMLFGAVGGLMVGAVFYVVVASVIRLLFGRR*
Ga0137388_115156292	3300012189	Vadose Zone Soil	MSATGDIWLSRGFSITCIVSAFIGALMVGMLLGEPDILMLFGAVGGVMVGAVFYLVVAAVIRFLF*
Ga0137382_105193341	3300012200	Vadose Zone Soil	MSERGDIWLSRGFSITCIVSAFIGALMVGMLLGEPDVLMLFGAVGGAMVGAVFYLVVAAVIRFLF*
Ga0126369_128343871	3300012971	Tropical Forest Soil	MSESGDIWLSRGFSVTCIPSAFIGAVTVGMLLGEPNFAIMLFGAVGGLAVGAVFYVVVASVIRLLFGRR*
Ga0182036_101681893	3300016270	Soil	MSERGDIWASRGFWVTCIVSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVVASVIRLLFGRR
Ga0182036_111307191	3300016270	Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGTLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLL
Ga0182041_100184785	3300016294	Soil	VSVIGLPSLTCILSAFIGALMVGMLLGEPDALMLFGAVGGVMVGAVFYAVVAGVIRLLFGRR
Ga0182033_102364802	3300016319	Soil	MSERGDIWDSRAFSVTCILSTFIGALMVGMLLGEPDVLMLFGAVGGVTVGAVFYVVVAGVIRRLF
Ga0182033_104533661	3300016319	Soil	AFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVVVGVIRLLF
Ga0182035_101339852	3300016341	Soil	MTERGDIWLSQGFSITCILSAFIGALMVGMLLGEADVLMLFGAVNGVMVDAVFYLVVAGVIRLLLNAGCRGFESVTAHQ
Ga0182032_116241852	3300016357	Soil	RGDIWLSRGFSVTCILSAFIGALLVGMLLGEPDVLILFGAVGGVAVGAVFYFIVAGVIRLLFGRR
Ga0182034_109954831	3300016371	Soil	MSARGDTWLSRSFSVTCILGAFIGALMVGVLLGEPDVLMLFCAVGGVMVGAVFYFVVAGVIR
Ga0182037_118005371	3300016404	Soil	IHSSANMSERGDIWDSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVTVGAVFYVVVAGVIRRLF
Ga0126371_101885004	3300021560	Tropical Forest Soil	MSERGDIWLSRGFWVTCILSAFIGAMMVGVVLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFSQRET
Ga0126371_109882211	3300021560	Tropical Forest Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGVVGGVMVGAVFYFVVAGVIRLLFGRR
Ga0207684_102285633	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MNEGGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLF
Ga0207684_103006771	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSERGDIWQSRGFSVACILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYAVVAGVIRRLF
Ga0207684_103649262	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MSARGDIWLSRGFSVTCILSAFIGALMVGVLLGEPDVLMLFGAVGGVMVGAVFHFVVAGVIRLLF
Ga0207684_110952081	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	DHHEQQRAANMSERGDIWLSRGFSITCIVSAFIGALMVGMLLGEPDVLMLFGAVGGAMVGAVFYLVVAAVIRFLF
Ga0209382_106867862	3300027909	Populus Rhizosphere	MSERGDIWLSRGFSVTCIVSGFIGAVTVGMLLGEPDFVIMLFGAVGGVMVGAVFFFVATGVIRLLFDSEKL
Ga0318516_103237341	3300031543	Soil	MSERGDIWDSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVV
Ga0318534_107990681	3300031544	Soil	LVSVIGLPSLTCILSAFIGALMVGMLLGEPDALMLFGAVGGVMVGAVFYAVVAGVIRLLF
Ga0318541_100524272	3300031545	Soil	MSERGDIWPSRGFSVTCILSAFIGAVTVGMLLGEPNFAIMLFGAVGGLAVGAVFYVVVASVIRLLFGRR
Ga0318573_107005541	3300031564	Soil	GDIWLSQGFSITCILSAFIGALMVGMLLGEADVLMLFGAVNGVMVGAVFYFVVAGVIRLLLNAGCRRFESVTAHQ
Ga0318515_101889951	3300031572	Soil	SNAANMSERGDIWLSRGFSVTCLLSAFIGAVTVGMLLGEPNFAIMLFGAVGGLAVGAVFYVVVASVIRLLFGRR
Ga0318515_103118821	3300031572	Soil	MSERGDIWDSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVVVGVIRLLF
Ga0310915_1000349410	3300031573	Soil	VSVIGLPSLTCILSAFIGALMVGMLLGEPDALMLFGAVGGVMVGAVFYAVVAGVIRLLF
Ga0310915_100590703	3300031573	Soil	MSERGDIWDSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVTVGAVFYVVVAGVIRRLF
Ga0306917_106509951	3300031719	Soil	VTSGFPRGFSVTCILSAFIGALLVGMLLGEPDVLILFGAVGGVAVGAVFYFIVAGVIRLLFGRR
Ga0318501_103453381	3300031736	Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVVVGAVFYFVVTGVIRLLFGRR
Ga0306918_100483672	3300031744	Soil	MSARGDTWLSRSFSVTCILGAFIGALMVGVLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLF
Ga0318521_100401951	3300031770	Soil	SRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVTVGAVFYVVVAGVIRRLF
Ga0318543_102579361	3300031777	Soil	IWPSRGFSVTCILSAFIGAVTVGMLLGEPNFAIMLFGAVGGLAVGAVFYVVVASVIRLLFGRR
Ga0318543_102719512	3300031777	Soil	MSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFGRRLNSARAARIRA
Ga0318548_100292121	3300031793	Soil	FSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVTVGAVFYVVVAGVIRRLF
Ga0306919_101854982	3300031879	Soil	MSERGDIWLSRCFSLTCILSAFIGAATVGMLFGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLF
Ga0306925_101315983	3300031890	Soil	MTERGDIWLSQGFSITCILSAFIGALMVGMLLGEADVLMLFGAVNGVMVDAVFYLVVAGVIRLLLNAGCRRFESVTAHQ
Ga0306925_112962222	3300031890	Soil	MSERGDIWASRGFWVTCIVSAFIGALMVGMLLGEPDVLMLFGAVGGAMVGAVFYVVVAGVIRRLFGRRET
Ga0318520_101599251	3300031897	Soil	SERGDIWDSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVTVGAVFYVVVAGVIRRLF
Ga0310916_100669856	3300031942	Soil	GDIWDSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVTVGAVFYVVVAGVIRRL
Ga0310916_102204222	3300031942	Soil	MTERGDIWLSQGFSITCILSAFIGALMVGMLLGEADVLMLFGAVNGVMVGAVFYFVVAGVIRLLLNAGCRRFESVTAHQ
Ga0310916_114621721	3300031942	Soil	MAANMSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAGFYLVVAGVIRFLF
Ga0310910_106768961	3300031946	Soil	LSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAGFYLVVAGVIRFLF
Ga0306926_104649703	3300031954	Soil	MSSSAANMSERGDIWLSRGFSITCIVSAFIGALMVGMLLGEPDILMLFGAVGGAMVGAVFYLVVAAVIRFLF
Ga0306926_120320292	3300031954	Soil	MSSSAANMSERGDIWHSRSFQVTCILSGFIGAVTVGMLLGEPDVLMLFGAVGGVMVGAVFYAVVAGAIRLLF
Ga0318549_104956701	3300032041	Soil	MSERGDIWDSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVV
Ga0318506_101271121	3300032052	Soil	DSRAFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYVVVVGVIRLLF
Ga0318533_103604461	3300032059	Soil	MSSSAANMSERGDIWLFRGFSVTCILSAFVGALTVGMLLGEPDVLMLFGAVGGVMVGTVFYFVVAGVVR
Ga0318533_109296711	3300032059	Soil	GFSVTCLLSAFIGAVTVGMLLGEPDLIIMLFGAVGGVMVGAVFYVVVAGVIRRLSDREKP
Ga0318504_103747912	3300032063	Soil	TGTASPDRYRLVSVIGLPSLTCILSAFIGALMVGMLLGEPDALMLFGAVGGVMVGAVFYAVVAGVIRLLF
Ga0318504_106203461	3300032063	Soil	IWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVVVGAVFYFVVTGVIRLLFGRR
Ga0318513_104901202	3300032065	Soil	MRERGDIWLSRGFSVTCIVSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFGRRLNSARAARIRA
Ga0306924_100187292	3300032076	Soil	MSARGDTWLSRSFSVTCILGAFIGALMVGVLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLL
Ga0318577_103346621	3300032091	Soil	TTSSAANMSERGDIWLSRGFSVTCILSAFIGALMVGMLLGEPDVLMLFGAVGGVVVGAVFYFVVTGVIRLLFGRR
Ga0318577_105517431	3300032091	Soil	MSERGDIWLSRGFSVTCILSAFIGAVTVGMLLGEPDFVIMLFGAVGGLMVGAVFYVVVTSVIRLLFGRR
Ga0318540_103329581	3300032094	Soil	FSITCILSAFIGALMVGMLLGEADVLMLFGAVNGVMVDAVFYLVVAGVIRLLLNAGCRRFESVTAHQ
Ga0306920_1004310981	3300032261	Soil	RERGDIWLSRGFSVTCIVSAFIGALMVGMLLGEPDVLMLFGAVGGVMVGAVFYFVVAGVIRLLFGRRLNSARAARIRA
Ga0310914_106717191	3300033289	Soil	MSERGDIWLSRCFSLTCILSAFIGAATVGMLFGEPDVLMLFGAVGGVMVGAVFYFVVAGV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F074525

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences