NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F074576

Metagenome / Metatranscriptome Family F074576

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F074576
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 45 residues
Representative Sequence QRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS
Number of Associated Samples 93
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 1.72 %
% of genes near scaffold ends (potentially truncated) 36.13 %
% of genes from short scaffolds (< 2000 bps) 44.54 %
Associated GOLD sequencing projects 86
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (85.714 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake
(18.487 % of family members)
Environment Ontology (ENVO) Unclassified
(65.546 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Water (non-saline)
(73.109 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 17.78%    β-sheet: 17.78%    Coil/Unstructured: 64.44%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF11750DUF3307 12.61
PF03692CxxCxxCC 9.24
PF04851ResIII 6.72
PF09511RNA_lig_T4_1 4.20
PF00383dCMP_cyt_deam_1 3.36
PF00149Metallophos 2.52
PF13528Glyco_trans_1_3 1.68
PF01541GIY-YIG 0.84
PF15891Nuc_deoxyri_tr2 0.84
PF14572Pribosyl_synth 0.84
PF13704Glyco_tranf_2_4 0.84


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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A85.71 %
All OrganismsrootAll Organisms14.29 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002389|B570J29643_101403Not Available1341Open in IMG/M
3300003277|JGI25908J49247_10019391Not Available2038Open in IMG/M
3300003277|JGI25908J49247_10024013All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Panarthropoda → Arthropoda → Chelicerata → Arachnida → Acari → Acariformes → Trombidiformes → Prostigmata → Eupodina → Bdelloidea1791Open in IMG/M
3300003277|JGI25908J49247_10030206Not Available1536Open in IMG/M
3300005580|Ga0049083_10135224Not Available848Open in IMG/M
3300005585|Ga0049084_10020748Not Available2623Open in IMG/M
3300005955|Ga0073922_1019838Not Available805Open in IMG/M
3300006802|Ga0070749_10304596All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Candidatus Acidulodesulfobacterales → Candidatus Acididesulfobacter → Candidatus Acididesulfobacter diazotrophicus893Open in IMG/M
3300007554|Ga0102820_1042722Not Available1103Open in IMG/M
3300008107|Ga0114340_1089126All Organisms → cellular organisms → Bacteria1256Open in IMG/M
3300008108|Ga0114341_10015895Not Available5501Open in IMG/M
3300008110|Ga0114343_1177743Not Available644Open in IMG/M
3300008113|Ga0114346_1187269Not Available841Open in IMG/M
3300008258|Ga0114840_1060527Not Available587Open in IMG/M
3300008266|Ga0114363_1086948All Organisms → Viruses → Predicted Viral1152Open in IMG/M
3300008266|Ga0114363_1197970Not Available620Open in IMG/M
3300009052|Ga0102886_1099318Not Available886Open in IMG/M
3300009155|Ga0114968_10405778Not Available743Open in IMG/M
3300009155|Ga0114968_10562897Not Available606Open in IMG/M
3300009158|Ga0114977_10105965All Organisms → Viruses → Predicted Viral1702Open in IMG/M
3300009158|Ga0114977_10423322Not Available739Open in IMG/M
3300009160|Ga0114981_10172617Not Available1190Open in IMG/M
3300009184|Ga0114976_10143080Not Available1343Open in IMG/M
3300010885|Ga0133913_11541761All Organisms → Viruses → Predicted Viral1680Open in IMG/M
3300012012|Ga0153799_1009373All Organisms → Viruses → Predicted Viral2209Open in IMG/M
3300017701|Ga0181364_1034035Not Available821Open in IMG/M
3300017736|Ga0181365_1036269Not Available1242Open in IMG/M
3300017747|Ga0181352_1115102Not Available729Open in IMG/M
3300017784|Ga0181348_1234182Not Available642Open in IMG/M
3300019784|Ga0181359_1145112Not Available821Open in IMG/M
3300020151|Ga0211736_10436618All Organisms → cellular organisms → Bacteria988Open in IMG/M
3300022407|Ga0181351_1121316Not Available979Open in IMG/M
3300024346|Ga0244775_10948923Not Available681Open in IMG/M
3300024346|Ga0244775_11037837Not Available645Open in IMG/M
3300024346|Ga0244775_11122896Not Available615Open in IMG/M
3300024549|Ga0256308_1018566All Organisms → Viruses → Predicted Viral1519Open in IMG/M
3300024554|Ga0255242_1033613All Organisms → Viruses → Predicted Viral1169Open in IMG/M
3300024564|Ga0255237_1100629Not Available659Open in IMG/M
3300024856|Ga0256304_1083025Not Available649Open in IMG/M
3300025283|Ga0208048_1021816All Organisms → Viruses → Predicted Viral1902Open in IMG/M
3300027131|Ga0255066_1014980All Organisms → Viruses → Predicted Viral1149Open in IMG/M
3300027140|Ga0255080_1077562Not Available500Open in IMG/M
3300027151|Ga0255063_1082691Not Available588Open in IMG/M
3300027287|Ga0255135_1021231Not Available805Open in IMG/M
3300027754|Ga0209596_1086437All Organisms → cellular organisms → Bacteria1514Open in IMG/M
3300027763|Ga0209088_10037074Not Available2428Open in IMG/M
3300027763|Ga0209088_10111971All Organisms → Viruses → Predicted Viral1240Open in IMG/M
3300027963|Ga0209400_1148673All Organisms → Viruses → Predicted Viral1024Open in IMG/M
3300027972|Ga0209079_10141866Not Available823Open in IMG/M
3300031758|Ga0315907_10660473Not Available801Open in IMG/M
3300031857|Ga0315909_10661141Not Available685Open in IMG/M
3300031999|Ga0315274_11257757All Organisms → cellular organisms → Bacteria727Open in IMG/M
3300033816|Ga0334980_0092701All Organisms → Viruses → Predicted Viral1259Open in IMG/M
3300033994|Ga0334996_0381370Not Available669Open in IMG/M
3300034021|Ga0335004_0350702Not Available853Open in IMG/M
3300034110|Ga0335055_0302489Not Available682Open in IMG/M
3300034166|Ga0335016_0270886Not Available1057Open in IMG/M
3300034200|Ga0335065_0513226Not Available714Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake18.49%
Freshwater LakeEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lake16.81%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater14.29%
Freshwater, PlanktonEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater, Plankton10.92%
FreshwaterEnvironmental → Aquatic → Freshwater → River → Unclassified → Freshwater9.24%
FreshwaterEnvironmental → Aquatic → Freshwater → Unclassified → Unclassified → Freshwater5.88%
Freshwater LenticEnvironmental → Aquatic → Freshwater → Lentic → Unclassified → Freshwater Lentic5.04%
FreshwaterEnvironmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater5.04%
SedimentEnvironmental → Aquatic → Freshwater → Lake → Sediment → Sediment2.52%
EstuarineEnvironmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine2.52%
FreshwaterEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Freshwater1.68%
Estuary WaterEnvironmental → Aquatic → Marine → Coastal → Unclassified → Estuary Water1.68%
EstuarineEnvironmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine1.68%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment0.84%
LakeEnvironmental → Aquatic → Freshwater → Lentic → Epilimnion → Lake0.84%
FreshwaterEnvironmental → Aquatic → Freshwater → Lotic → Unclassified → Freshwater0.84%
AqueousEnvironmental → Aquatic → Marine → Coastal → Unclassified → Aqueous0.84%
SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sand0.84%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002389Freshwater microbial communities from Lake Mendota, WI - 21SEP2012 deep hole epilimnionEnvironmentalOpen in IMG/M
3300002471Freshwater microbial communities from San Paulo Zoo lake, Brazil - MAY 2013EnvironmentalOpen in IMG/M
3300003277Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SDEnvironmentalOpen in IMG/M
3300003412Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.DDEnvironmentalOpen in IMG/M
3300005580Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG MI27MSRFEnvironmentalOpen in IMG/M
3300005581Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ER78MSRFEnvironmentalOpen in IMG/M
3300005584Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG HU45MSRFEnvironmentalOpen in IMG/M
3300005585Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRFEnvironmentalOpen in IMG/M
3300005955Groundwater microbial communities from the Columbia River, Washington, USA, for microbe roles in carbon and contaminant biogeochemistry - GW-RW metaG T2_23-Sept-14EnvironmentalOpen in IMG/M
3300006802Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Nov_18EnvironmentalOpen in IMG/M
3300007554Estuarine microbial communities from the Columbia River estuary - Ebb tide non-ETM metaG S.709EnvironmentalOpen in IMG/M
3300007974Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1460C_0.2umEnvironmentalOpen in IMG/M
3300007992Coastal water column microbial communities from Columbia River Estuary, Oregon, USA - CMOP_DNA_1461AB_0.2umEnvironmentalOpen in IMG/M
3300008107Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0046-3-NAEnvironmentalOpen in IMG/M
3300008108Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-C-NAEnvironmentalOpen in IMG/M
3300008110Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample E2014-0048-3-NAEnvironmentalOpen in IMG/M
3300008113Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample E2014-0050-3-NAEnvironmentalOpen in IMG/M
3300008114Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE2, Sample E2014-0106-C-NAEnvironmentalOpen in IMG/M
3300008258Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE4, Sample HABS-E2014-0110-3-NAEnvironmentalOpen in IMG/M
3300008266Freshwater microbial communities from Harmful Algal Blooms in Lake Erie, Western Basin, USA - Station WLE12, Sample HABS-E2014-0108-C-NAEnvironmentalOpen in IMG/M
3300009052Estuarine microbial communities from the Columbia River estuary - metaG 1550A-02EnvironmentalOpen in IMG/M
3300009068Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140807_MF_MetaGEnvironmentalOpen in IMG/M
3300009155Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaGEnvironmentalOpen in IMG/M
3300009158Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_MF_MetaGEnvironmentalOpen in IMG/M
3300009160Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaGEnvironmentalOpen in IMG/M
3300009161Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaGEnvironmentalOpen in IMG/M
3300009180Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaGEnvironmentalOpen in IMG/M
3300009183Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaGEnvironmentalOpen in IMG/M
3300009184Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130805_EF_MetaGEnvironmentalOpen in IMG/M
3300009185Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_140625_MF_MetaGEnvironmentalOpen in IMG/M
3300010885northern Canada Lakes Co-assemblyEnvironmentalOpen in IMG/M
3300011268Sub-surface freshwater microbial communities from San Francisco Estuary Delta, California, USA . Combined Assembly of Gp0173482, Gp0175554, Gp0175555EnvironmentalOpen in IMG/M
3300012006Freshwater microbial communities from Lake Lanier in Georgia, USA - LL_1101BEnvironmentalOpen in IMG/M
3300012012Freshwater microbial communities from Eastern Basin Lake Erie, Ontario, Canada - Station 879 - Top - Depth 1mEnvironmentalOpen in IMG/M
3300013004Eutrophic lake water microbial communities from Lake Mendota, Wisconsin, USA - GEODES118 metaGEnvironmentalOpen in IMG/M
3300013014Oligotrophic lake water microbial communities from Sparkling Lake, Wisconsin, USA - GEODES006 metaGEnvironmentalOpen in IMG/M
3300013126 (restricted)Freshwater microbial communities from Kabuno Bay, South-Kivu, Congo ? kab_022012_10mEnvironmentalOpen in IMG/M
3300013129 (restricted)Sediment microbial communities from Lake Kivu, Rwanda - Sediment site 10cmEnvironmentalOpen in IMG/M
3300013372Freshwater microbial communities from Lake Erie, Ontario, Canada. Combined Assembly of 10 SPsEnvironmentalOpen in IMG/M
3300017701Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.S.NEnvironmentalOpen in IMG/M
3300017736Freshwater viral communities from Lake Michigan, USA - Fa13.ND.MM110.D.NEnvironmentalOpen in IMG/M
3300017747Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MLB.S.NEnvironmentalOpen in IMG/M
3300017784Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM110.D.NEnvironmentalOpen in IMG/M
3300019784Freshwater viral communities from Lake Michigan, USA - Fa13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300020141Freshwater lake microbial communities from Lake Erken, Sweden - P4710_104 megahit1EnvironmentalOpen in IMG/M
3300020151Freshwater lake microbial communities from Lake Erken, Sweden - P4710_202 megahit1EnvironmentalOpen in IMG/M
3300020160Freshwater lake microbial communities from Lake Erken, Sweden - P4710_105 megahit1EnvironmentalOpen in IMG/M
3300020506Freshwater microbial communities from Lake Mendota, WI - 26OCT2012 deep hole epilimnion (SPAdes)EnvironmentalOpen in IMG/M
3300022407Freshwater viral communities from Lake Michigan, USA - Su13.VD.MM15.S.DEnvironmentalOpen in IMG/M
3300023174Freshwater microbial communities from Lake Lanier, Atlanta, Georgia, United States - LL-1505EnvironmentalOpen in IMG/M
3300024346Whole water sample coassemblyEnvironmentalOpen in IMG/M
3300024549Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024554Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Law_RepB_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024564Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepC_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024856Metatranscriptome of freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8d (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300025283Freshwater microbial communities from Lake Malawi, Central Region, Malawi to study Microbial Dark Matter (Phase II) - Malawi_45m_30L (SPAdes)EnvironmentalOpen in IMG/M
3300027123Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Yuk_RepA_8dEnvironmentalOpen in IMG/M
3300027131Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_8hEnvironmentalOpen in IMG/M
3300027140Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Atlam_RepC_8hEnvironmentalOpen in IMG/M
3300027145Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Law_RepA_8hEnvironmentalOpen in IMG/M
3300027151Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepA_0hEnvironmentalOpen in IMG/M
3300027287Freshwater microbial communities from St. Lawrence River, New York, United States - Law_Atlam_RepA_8dEnvironmentalOpen in IMG/M
3300027538Freshwater microbial communities from Columbia River, Oregon, United States - Colum_Cont_RepB_8dEnvironmentalOpen in IMG/M
3300027649Freshwater lentic microbial communities from great Laurentian Lakes, MI, USA - Great Lakes metaG ON33MSRF (SPAdes)EnvironmentalOpen in IMG/M
3300027688Freshwater lake microbial communities from Lake Michigan, USA - Fa13.BD.MM110.DN (SPAdes)EnvironmentalOpen in IMG/M
3300027707Freshwater lake microbial communities from Lake Michigan, USA - Su13.BD.MM110.DCMD (SPAdes)EnvironmentalOpen in IMG/M
3300027754Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027759Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130206_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027763Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140625_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027770Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130207_XF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027772Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM110.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027785Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SN (SPAdes)EnvironmentalOpen in IMG/M
3300027798Freshwater lake microbial communities from Lake Michigan, USA - Sp13.BD.MM15.SD (SPAdes)EnvironmentalOpen in IMG/M
3300027963Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027969Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_130626_EF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300027972Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015 (SPAdes)EnvironmentalOpen in IMG/M
3300027974Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_MF_MetaG (SPAdes)EnvironmentalOpen in IMG/M
3300031758Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA123EnvironmentalOpen in IMG/M
3300031784Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 4 MA112EnvironmentalOpen in IMG/M
3300031787Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 12 MA114EnvironmentalOpen in IMG/M
3300031857Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA125EnvironmentalOpen in IMG/M
3300031999Sediment microbial communities from Yellowstone Lake, YNP, Wyoming, USA - YL17G02_20EnvironmentalOpen in IMG/M
3300032050Freshwater fungal communities from buoy surface, Lake Erie, Ohio, United States - Buoy 2 MA122EnvironmentalOpen in IMG/M
3300033816Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME16Sep2004-rr0005EnvironmentalOpen in IMG/M
3300033994Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME25Jul2006D11-rr0046EnvironmentalOpen in IMG/M
3300034021Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Oct2014-rr0057EnvironmentalOpen in IMG/M
3300034062Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME27Jul2012-rr0045EnvironmentalOpen in IMG/M
3300034101Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME19Sep2005-rr0107EnvironmentalOpen in IMG/M
3300034105Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME15May2014-rr0127EnvironmentalOpen in IMG/M
3300034110Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME01Jun2009D10-rr0171EnvironmentalOpen in IMG/M
3300034116Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-CONTROL-GENDONOREnvironmentalOpen in IMG/M
3300034166Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME13Sep2012-rr0079EnvironmentalOpen in IMG/M
3300034200Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME18Jul2013-rr0190EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
B570J29643_10140313300002389FreshwaterRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT*
metazooDRAFT_144474913300002471LakeDRTVIEAINHATDMNFFYSFEEDFFWFNDQIPDWKLAKVS*
JGI25908J49247_1001939133300003277Freshwater LakeMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
JGI25908J49247_1002401323300003277Freshwater LakeMEFRGKQRTLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK*
JGI25908J49247_1003020643300003277Freshwater LakeYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK*
JGI25912J50252_1002713033300003412Freshwater LakeLNDRTIIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKKV*
JGI25912J50252_1005426823300003412Freshwater LakeMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNVS*
Ga0049083_1013522433300005580Freshwater LenticTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0049081_1027574633300005581Freshwater LenticLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKI*
Ga0049082_1010108723300005584Freshwater LenticQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0049084_1002074843300005585Freshwater LenticMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK*
Ga0049084_1004856723300005585Freshwater LenticYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0073922_101983813300005955SandIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0070749_1030459633300006802AqueousPHMEFRGKPRQLNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT*
Ga0102820_104272233300007554EstuarineLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK*
Ga0105747_124946733300007974Estuary WaterRTVIEAYNNATNQTFHYSFEEDFFWFSGQIPDWKLKKI*
Ga0105748_1010693033300007992Estuary WaterQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKKV*
Ga0114340_108912633300008107Freshwater, PlanktonMEFRGKQRQMNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKI*
Ga0114340_124357923300008107Freshwater, PlanktonMEFRGKQRQLNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT*
Ga0114341_10015895143300008108Freshwater, PlanktonMEFRGKQRQLNDRKVIEAYNPATNQTFFYSFDEDFFWFPGQIPDWKLKNTI*
Ga0114341_1008688173300008108Freshwater, PlanktonRGKRRELNNREVMEAYNPVTGQTFFYSFEEDFFWFSGQIPDYKLPKIS*
Ga0114343_117774323300008110Freshwater, PlanktonMEFRGKQRHMNDRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKET*
Ga0114346_118726923300008113Freshwater, PlanktonMEFRGKQRHMNDRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVT*
Ga0114346_121770233300008113Freshwater, PlanktonIEAYNPATEQHFFYSFDEDFFWFKDQIPDWKLQKIS*
Ga0114346_131766513300008113Freshwater, PlanktonAYNPATNQTFFYSFDEDFFWFPGQIPDWKLKNTI*
Ga0114347_111302623300008114Freshwater, PlanktonMEFRGKQRQLNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKI*
Ga0114840_106052733300008258Freshwater, PlanktonMEFRGKQRQLNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSI
Ga0114363_108694843300008266Freshwater, PlanktonEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLSKSILT*
Ga0114363_119594923300008266Freshwater, PlanktonQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0114363_119797033300008266Freshwater, PlanktonMEFRGKQRQMNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT*
Ga0102886_109931813300009052EstuarineTVIEAYNNATNQTFHYSFDEDLFWFAGQIPDWKLKKVS*
Ga0114973_1045558013300009068Freshwater LakeQRQFNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKV*
Ga0114973_1063391423300009068Freshwater LakeMEFRGKQRQFNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0114968_1040577823300009155Freshwater LakeIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS*
Ga0114968_1041680633300009155Freshwater LakePHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS*
Ga0114968_1056289713300009155Freshwater LakePHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0114977_1010596513300009158Freshwater LakeKYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0114977_1042332223300009158Freshwater LakeTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNVS*
Ga0114981_1017261713300009160Freshwater LakeVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS*
Ga0114966_1029824813300009161Freshwater LakeKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS*
Ga0114979_1053303723300009180Freshwater LakeRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNTK*
Ga0114974_1067581923300009183Freshwater LakeMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFSGQIPDWKLKKI*
Ga0114976_1014308013300009184Freshwater LakeVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0114971_1066025323300009185Freshwater LakeRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNVS*
Ga0133913_1154176143300010885Freshwater LakeHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVA*
Ga0151620_121697113300011268FreshwaterIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK*
Ga0119955_119007023300012006FreshwaterQLNDRIVIEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS*
Ga0153799_100937313300012012FreshwaterLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS*
Ga0164293_1095736213300013004FreshwaterDRIVIEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKI*
Ga0164295_1147542413300013014FreshwaterTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS*
(restricted) Ga0172367_1028094233300013126FreshwaterIEAYNPSTDMSFYYSFDEDFFWFTGQIPDWKLPKS*
(restricted) Ga0172364_1031806123300013129SedimentIEAYNHATEQNFYYSFEEDFFWFAGQIPDYKLPKVS*
Ga0177922_1063508923300013372FreshwaterYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFPGQIPDWKLKKI*
Ga0181364_103403523300017701Freshwater LakeMEFRGKQRTLNDRTVIEAYNNATNQTFHYSFEEDFFWFSGQIPDWKLKNVS
Ga0181365_103626913300017736Freshwater LakeMEFRGKQRQLNDRTVIEAYNNVTNQTFHYSFEEDFFWFAGQIPDWKLKNTK
Ga0181352_111510223300017747Freshwater LakeQMNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0181348_115910833300017784Freshwater LakeYPHMEFRGKQRTLNDRTVIEAYNNATNQTFHYSFDEDFFWFVGQIPDWKLKNVS
Ga0181348_123418223300017784Freshwater LakeYPHMEFRGKQRTLNDRTVIEAYNNATNQTFHYSFDEDFFWFSGQIPDWKLKKVS
Ga0181359_104293013300019784Freshwater LakeQRTLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNVS
Ga0181359_114511233300019784Freshwater LakeNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0211732_118389213300020141FreshwaterILNNRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLTKTS
Ga0211736_1043661813300020151FreshwaterNRTVIEAYNNATNQTFHYSFDEDFFWFPSQIPDYKLPKI
Ga0211733_1076398313300020160FreshwaterKQRILNNRTVIEAYNNATNQTFHYSFDEDFFWFSGQIPDWKLPKT
Ga0208091_103627633300020506FreshwaterVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKI
Ga0181351_112131613300022407Freshwater LakeEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS
Ga0181351_112697213300022407Freshwater LakeQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS
Ga0181351_123081423300022407Freshwater LakeTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNVS
Ga0214921_1014094943300023174FreshwaterPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNVS
Ga0244775_1094892323300024346EstuarineIEAYNHATNQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0244775_1103783723300024346EstuarineEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS
Ga0244775_1112289623300024346EstuarineQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVA
Ga0256308_101856653300024549FreshwaterMEFRGKQRQMNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0255242_103361333300024554FreshwaterMEFRGKQRQLNDRIVIEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0255237_110062923300024564FreshwaterRQMNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0256304_108302523300024856FreshwaterMEFRGKQRQLNDRTVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0208048_102181613300025283FreshwaterIINDRTVIEAYNHVTEQNFYYSFEEDFFWFAGQIPDYKLPKVS
Ga0255090_100835053300027123FreshwaterMEFRGKPRQLNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0255066_101498043300027131FreshwaterVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0255080_107756213300027140FreshwaterYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFVGQIPDWKLTKVS
Ga0255114_106171523300027145FreshwaterMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS
Ga0255063_108269123300027151FreshwaterRTVIEAYNNATNQTFHYSFDEDFFWFVGQIPDWKLTKVS
Ga0255135_102123133300027287FreshwaterRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS
Ga0255085_112675013300027538FreshwaterLNDRTVMEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0208960_102464413300027649Freshwater LenticDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNTK
Ga0209553_119827713300027688Freshwater LakeEFRGKQRTLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNTK
Ga0209443_122408323300027707Freshwater LakeTIIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKKV
Ga0209596_108643723300027754Freshwater LakeMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFSGQIPDWKLKKI
Ga0209296_127882923300027759Freshwater LakeMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNVS
Ga0209088_1003707433300027763Freshwater LakeMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNTK
Ga0209088_1011197113300027763Freshwater LakeFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS
Ga0209086_1028383513300027770Freshwater LakeVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVA
Ga0209768_1020641433300027772Freshwater LakeKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKNVS
Ga0209246_1003350563300027785Freshwater LakeMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFEEDFFWFAGQIPDWKLKKVS
Ga0209353_1021776613300027798Freshwater LakeQRTLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS
Ga0209400_114867313300027963Freshwater LakeYPHMEFRGKQRQLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS
Ga0209191_134093813300027969Freshwater LakeGRQRQLNDRTIIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKV
Ga0209079_1014186623300027972Freshwater SedimentRTLNDRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0209299_120807323300027974Freshwater LakeLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNTK
Ga0315907_1066047313300031758FreshwaterVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLSKSILT
Ga0315899_1109319413300031784FreshwaterIEAYNPATEQHFFYSFDEDFFWFKDQIPDWKLQKIS
Ga0315900_1105505623300031787FreshwaterQRQLNDRIVIEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0315909_1063822123300031857FreshwaterRGKQRQLNDRIVIEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0315909_1066114123300031857FreshwaterRTLNDRTVIEAYNHATNQNFFYSFEEDFFWFPSQIPDYKLPKVS
Ga0315274_1125775733300031999SedimentTIIEAYNNATNQTFHYSFDEDFFWFAGQIPDWELKKI
Ga0315274_1139486233300031999SedimentVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKNVS
Ga0315906_1030604513300032050FreshwaterGKQRQLHDRIVIEAHNPATEQHFFYSFDEDFFWFKDQIPDWKLQKIS
Ga0315906_1053673613300032050FreshwaterRSIKNRTVIEAINQATNMNFYYSFDEDFFWFTNCEIPDWKMEKV
Ga0334980_0092701_1120_12573300033816FreshwaterQRQLHDRIVIEAYNPATEQHFFYSFDEDFFWFKDQIPDWKLQKIS
Ga0334996_0003794_5130_52853300033994FreshwaterMEFRGKQRQLHDRTIIEAYNPATEQHFFYSFDEDFFWFKDQIPDWKLQKIS
Ga0334996_0381370_485_6463300033994FreshwaterMEFRGKHRQLNDRKGIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0335004_0350702_696_8513300034021FreshwaterMEFRGKQRTLNDRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0334995_0086947_2280_24083300034062FreshwaterMNDRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0334995_0645012_3_1403300034062FreshwaterKQRQMNDRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKI
Ga0335027_0543308_2_1363300034101FreshwaterQRILNDRTVIEAYNHAINQNFFYSFDEDFFWFPGQIPDWKLKKI
Ga0335035_0404462_639_7733300034105FreshwaterRILNDRTVIEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0335055_0302489_21_1493300034110FreshwaterLNDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLTKVS
Ga0335068_0569650_369_5123300034116FreshwaterQRQLNDRKVIEAYNPATNQTFFYSFDEDFFWFPGQIPDYKLPKSILT
Ga0335016_0270886_3_1223300034166FreshwaterRTVMEAYNHAINQNFFYSFDEDFFWFPGQIPDYKLPKVS
Ga0335065_0513226_592_7143300034200FreshwaterDRTVIEAYNNATNQTFHYSFDEDFFWFAGQIPDWKLKKVS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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