NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F074675

Metagenome Family F074675

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F074675
Family Type Metagenome
Number of Sequences 119
Average Sequence Length 66 residues
Representative Sequence EHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGVLAWVAAALLLFGARGLRSRRAHS
Number of Associated Samples 107
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 1.90 %
% of genes near scaffold ends (potentially truncated) 85.71 %
% of genes from short scaffolds (< 2000 bps) 81.51 %
Associated GOLD sequencing projects 105
AlphaFold2 3D model prediction Yes
3D model pTM-score0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (82.353 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil
(19.328 % of family members)
Environment Ontology (ENVO) Unclassified
(27.731 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(51.261 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Transmembrane (alpha-helical) Signal Peptide: No Secondary Structure distribution: α-helix: 66.67%    β-sheet: 0.00%    Coil/Unstructured: 33.33%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.44
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF00378ECH_1 25.21
PF02627CMD 3.36
PF01979Amidohydro_1 3.36
PF03861ANTAR 3.36
PF00582Usp 2.52
PF00578AhpC-TSA 2.52
PF00561Abhydrolase_1 2.52
PF03480DctP 1.68
PF13602ADH_zinc_N_2 1.68
PF13594Obsolete Pfam Family 1.68
PF01315Ald_Xan_dh_C 1.68
PF14534DUF4440 1.68
PF13424TPR_12 1.68
PF00496SBP_bac_5 0.84
PF04392ABC_sub_bind 0.84
PF00149Metallophos 0.84
PF13425O-antigen_lig 0.84
PF01738DLH 0.84
PF09364XFP_N 0.84
PF05406WGR 0.84
PF13302Acetyltransf_3 0.84
PF00005ABC_tran 0.84
PF00296Bac_luciferase 0.84
PF12840HTH_20 0.84
PF13147Obsolete Pfam Family 0.84
PF00866Ring_hydroxyl_B 0.84
PF02746MR_MLE_N 0.84
PF01699Na_Ca_ex 0.84
PF08240ADH_N 0.84
PF00441Acyl-CoA_dh_1 0.84
PF07690MFS_1 0.84
PF02639DUF188 0.84
PF07355GRDB 0.84
PF12867DinB_2 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG3707Two-component response regulator, AmiR/NasT family, consists of REC and RNA-binding antiterminator (ANTAR) domainsTranscription [K] 3.36
COG0599Uncharacterized conserved protein YurZ, alkylhydroperoxidase/carboxymuconolactone decarboxylase familyGeneral function prediction only [R] 3.36
COG2128Alkylhydroperoxidase family enzyme, contains CxxC motifInorganic ion transport and metabolism [P] 3.36
COG4948L-alanine-DL-glutamate epimerase or related enzyme of enolase superfamilyCell wall/membrane/envelope biogenesis [M] 1.68
COG3831WGR domain, predicted DNA-binding domain in MolRTranscription [K] 0.84
COG55173-phenylpropionate/cinnamic acid dioxygenase, small subunitSecondary metabolites biosynthesis, transport and catabolism [Q] 0.84
COG0387Cation (Ca2+/Na+/K+)/H+ antiporter ChaAInorganic ion transport and metabolism [P] 0.84
COG0530Ca2+/Na+ antiporterInorganic ion transport and metabolism [P] 0.84
COG1671Uncharacterized conserved protein YaiI, UPF0178 familyFunction unknown [S] 0.84
COG1960Acyl-CoA dehydrogenase related to the alkylation response protein AidBLipid transport and metabolism [I] 0.84
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 0.84
COG2984ABC-type uncharacterized transport system, periplasmic componentGeneral function prediction only [R] 0.84

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms82.35 %
UnclassifiedrootN/A17.65 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300002561|JGI25384J37096_10057556All Organisms → cellular organisms → Bacteria1459Open in IMG/M
3300002914|JGI25617J43924_10021906All Organisms → cellular organisms → Bacteria2216Open in IMG/M
3300004157|Ga0062590_101227744All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium733Open in IMG/M
3300005175|Ga0066673_10022503All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria2930Open in IMG/M
3300005176|Ga0066679_10015699All Organisms → cellular organisms → Bacteria3891Open in IMG/M
3300005176|Ga0066679_11022559All Organisms → cellular organisms → Bacteria513Open in IMG/M
3300005177|Ga0066690_10172292All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1431Open in IMG/M
3300005187|Ga0066675_10865656All Organisms → cellular organisms → Bacteria683Open in IMG/M
3300005332|Ga0066388_100612982All Organisms → cellular organisms → Bacteria1709Open in IMG/M
3300005332|Ga0066388_100895034All Organisms → cellular organisms → Bacteria1467Open in IMG/M
3300005332|Ga0066388_102501045All Organisms → cellular organisms → Bacteria938Open in IMG/M
3300005343|Ga0070687_100875979All Organisms → cellular organisms → Bacteria642Open in IMG/M
3300005353|Ga0070669_101018798All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium711Open in IMG/M
3300005451|Ga0066681_10008083All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria5018Open in IMG/M
3300005466|Ga0070685_10535208All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium834Open in IMG/M
3300005545|Ga0070695_100737835All Organisms → cellular organisms → Bacteria784Open in IMG/M
3300005547|Ga0070693_100598964All Organisms → cellular organisms → Bacteria → Proteobacteria795Open in IMG/M
3300005552|Ga0066701_10459460All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300005552|Ga0066701_10744462All Organisms → cellular organisms → Bacteria → Proteobacteria586Open in IMG/M
3300005555|Ga0066692_10797844All Organisms → cellular organisms → Bacteria581Open in IMG/M
3300005558|Ga0066698_10419641Not Available917Open in IMG/M
3300005559|Ga0066700_10674271All Organisms → cellular organisms → Bacteria713Open in IMG/M
3300005559|Ga0066700_11033286All Organisms → cellular organisms → Bacteria539Open in IMG/M
3300005559|Ga0066700_11173042All Organisms → cellular organisms → Bacteria501Open in IMG/M
3300005586|Ga0066691_10428965All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium788Open in IMG/M
3300005713|Ga0066905_100565726All Organisms → cellular organisms → Bacteria957Open in IMG/M
3300005713|Ga0066905_100716362All Organisms → cellular organisms → Bacteria860Open in IMG/M
3300006032|Ga0066696_11036040All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium522Open in IMG/M
3300006794|Ga0066658_10212810All Organisms → cellular organisms → Bacteria1026Open in IMG/M
3300006800|Ga0066660_10124119All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1871Open in IMG/M
3300006846|Ga0075430_100088601All Organisms → cellular organisms → Bacteria2590Open in IMG/M
3300006852|Ga0075433_10829341All Organisms → cellular organisms → Bacteria807Open in IMG/M
3300006854|Ga0075425_100806132All Organisms → cellular organisms → Bacteria → Proteobacteria1076Open in IMG/M
3300006903|Ga0075426_10664093All Organisms → cellular organisms → Bacteria781Open in IMG/M
3300006914|Ga0075436_100196365All Organisms → cellular organisms → Bacteria1428Open in IMG/M
3300007076|Ga0075435_101530670All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium585Open in IMG/M
3300007255|Ga0099791_10363629All Organisms → cellular organisms → Bacteria694Open in IMG/M
3300009100|Ga0075418_13133882All Organisms → cellular organisms → Bacteria504Open in IMG/M
3300009792|Ga0126374_11567299Not Available543Open in IMG/M
3300009799|Ga0105075_1004266All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1147Open in IMG/M
3300009814|Ga0105082_1104541All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium537Open in IMG/M
3300009821|Ga0105064_1109923All Organisms → cellular organisms → Bacteria570Open in IMG/M
3300010029|Ga0105074_1088798All Organisms → cellular organisms → Bacteria576Open in IMG/M
3300010303|Ga0134082_10089955All Organisms → cellular organisms → Bacteria1208Open in IMG/M
3300010322|Ga0134084_10017264All Organisms → cellular organisms → Bacteria1898Open in IMG/M
3300010326|Ga0134065_10327320All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → Blastocatellales → Pyrinomonadaceae → unclassified Pyrinomonadaceae → Pyrinomonadaceae bacterium595Open in IMG/M
3300010337|Ga0134062_10637154All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300010358|Ga0126370_12223720All Organisms → cellular organisms → Bacteria541Open in IMG/M
3300010359|Ga0126376_11321606All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium742Open in IMG/M
3300010359|Ga0126376_12588511Not Available556Open in IMG/M
3300010362|Ga0126377_11374203All Organisms → cellular organisms → Bacteria779Open in IMG/M
3300010375|Ga0105239_12865318All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium563Open in IMG/M
3300010376|Ga0126381_102153499All Organisms → cellular organisms → Bacteria802Open in IMG/M
3300010398|Ga0126383_10337900All Organisms → cellular organisms → Bacteria1521Open in IMG/M
3300010398|Ga0126383_10626348Not Available1149Open in IMG/M
3300010399|Ga0134127_12305174All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium618Open in IMG/M
3300011421|Ga0137462_1112821Not Available654Open in IMG/M
3300012351|Ga0137386_10372172All Organisms → cellular organisms → Bacteria1028Open in IMG/M
3300012685|Ga0137397_11161474All Organisms → cellular organisms → Bacteria558Open in IMG/M
3300012925|Ga0137419_10119038All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1861Open in IMG/M
3300012930|Ga0137407_11210448All Organisms → cellular organisms → Bacteria717Open in IMG/M
3300012948|Ga0126375_10696914All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300012971|Ga0126369_11414329All Organisms → cellular organisms → Bacteria785Open in IMG/M
3300012976|Ga0134076_10004256All Organisms → cellular organisms → Bacteria4627Open in IMG/M
3300014157|Ga0134078_10119503Not Available1006Open in IMG/M
3300014259|Ga0075311_1002009All Organisms → cellular organisms → Bacteria3228Open in IMG/M
3300014969|Ga0157376_11802944All Organisms → cellular organisms → Bacteria648Open in IMG/M
3300015358|Ga0134089_10444703All Organisms → cellular organisms → Bacteria560Open in IMG/M
3300017657|Ga0134074_1087081All Organisms → cellular organisms → Bacteria1069Open in IMG/M
3300017939|Ga0187775_10268466All Organisms → cellular organisms → Bacteria661Open in IMG/M
3300018089|Ga0187774_10461812All Organisms → cellular organisms → Bacteria790Open in IMG/M
3300019789|Ga0137408_1128550All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales1395Open in IMG/M
3300021560|Ga0126371_10539336All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Desulfobacterales → Desulfobacteraceae1315Open in IMG/M
3300023071|Ga0247752_1033375All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium768Open in IMG/M
3300025885|Ga0207653_10066290Not Available1227Open in IMG/M
3300025910|Ga0207684_11549528All Organisms → cellular organisms → Bacteria538Open in IMG/M
3300025945|Ga0207679_10517324All Organisms → cellular organisms → Bacteria1067Open in IMG/M
3300026314|Ga0209268_1197152All Organisms → cellular organisms → Bacteria500Open in IMG/M
3300026326|Ga0209801_1103469All Organisms → cellular organisms → Bacteria1230Open in IMG/M
3300026335|Ga0209804_1280096All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium581Open in IMG/M
3300026358|Ga0257166_1030240All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300026529|Ga0209806_1154726All Organisms → cellular organisms → Bacteria869Open in IMG/M
3300026532|Ga0209160_1291233All Organisms → cellular organisms → Bacteria554Open in IMG/M
3300026538|Ga0209056_10370452All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium919Open in IMG/M
3300026538|Ga0209056_10568354All Organisms → cellular organisms → Bacteria575Open in IMG/M
3300027671|Ga0209588_1242639All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium552Open in IMG/M
3300028380|Ga0268265_12521425All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium520Open in IMG/M
3300028828|Ga0307312_10160405All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria1431Open in IMG/M
3300031720|Ga0307469_10651650All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium949Open in IMG/M
3300031720|Ga0307469_11451956All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium655Open in IMG/M
3300031740|Ga0307468_100642481All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300031768|Ga0318509_10801792All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella521Open in IMG/M
3300031777|Ga0318543_10114066All Organisms → cellular organisms → Bacteria1170Open in IMG/M
3300031794|Ga0318503_10251754All Organisms → cellular organisms → Bacteria573Open in IMG/M
3300031860|Ga0318495_10103367All Organisms → cellular organisms → Bacteria1282Open in IMG/M
3300032000|Ga0310903_10153219All Organisms → cellular organisms → Bacteria1041Open in IMG/M
3300032009|Ga0318563_10332535All Organisms → cellular organisms → Bacteria822Open in IMG/M
3300032060|Ga0318505_10289501All Organisms → cellular organisms → Bacteria772Open in IMG/M
3300032064|Ga0318510_10268782All Organisms → cellular organisms → Bacteria704Open in IMG/M
3300032091|Ga0318577_10067832All Organisms → cellular organisms → Bacteria1630Open in IMG/M
3300032892|Ga0335081_12138752All Organisms → cellular organisms → Bacteria → Nitrospinae/Tectomicrobia group → Candidatus Tectomicrobia → Candidatus Entotheonella592Open in IMG/M
3300033004|Ga0335084_10498800All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1250Open in IMG/M
3300033412|Ga0310810_10331578All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria → unclassified Candidatus Rokubacteria → Candidatus Rokubacteria bacterium1613Open in IMG/M
3300034149|Ga0364929_0028811All Organisms → cellular organisms → Bacteria1635Open in IMG/M
3300034164|Ga0364940_0004128All Organisms → cellular organisms → Bacteria3384Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil19.33%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil10.08%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil7.56%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere7.56%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil6.72%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.88%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil4.20%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil3.36%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.36%
Groundwater SandEnvironmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.52%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.52%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland2.52%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.68%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.68%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil1.68%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.68%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment1.68%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere1.68%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil0.84%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil0.84%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Corn, Switchgrass And Miscanthus Rhizosphere0.84%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands0.84%
SoilEnvironmental → Terrestrial → Soil → Loam → Grasslands → Soil0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere0.84%
Sediment SlurryEngineered → Bioremediation → Metal → Unclassified → Unclassified → Sediment Slurry0.84%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300002561Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_25_2013_1_40cmEnvironmentalOpen in IMG/M
3300002914Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cmEnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004480Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4EnvironmentalOpen in IMG/M
3300005175Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_122EnvironmentalOpen in IMG/M
3300005176Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128EnvironmentalOpen in IMG/M
3300005177Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139EnvironmentalOpen in IMG/M
3300005187Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_124EnvironmentalOpen in IMG/M
3300005332Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005451Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_130EnvironmentalOpen in IMG/M
3300005466Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005547Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaGEnvironmentalOpen in IMG/M
3300005552Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150EnvironmentalOpen in IMG/M
3300005555Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_141EnvironmentalOpen in IMG/M
3300005558Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_147EnvironmentalOpen in IMG/M
3300005559Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_149EnvironmentalOpen in IMG/M
3300005586Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_140EnvironmentalOpen in IMG/M
3300005713Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)EnvironmentalOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006794Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_107EnvironmentalOpen in IMG/M
3300006800Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_109EnvironmentalOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006854Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4Host-AssociatedOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006914Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5Host-AssociatedOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300007076Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4Host-AssociatedOpen in IMG/M
3300007255Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1EnvironmentalOpen in IMG/M
3300009100Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2Host-AssociatedOpen in IMG/M
3300009792Tropical forest soil microbial communities from Panama - MetaG Plot_12EnvironmentalOpen in IMG/M
3300009799Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N2_0_30EnvironmentalOpen in IMG/M
3300009814Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S2_50_60EnvironmentalOpen in IMG/M
3300009821Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_20_30EnvironmentalOpen in IMG/M
3300010029Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW S1_10_20EnvironmentalOpen in IMG/M
3300010303Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015EnvironmentalOpen in IMG/M
3300010322Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300010337Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300010398Tropical forest soil microbial communities from Panama - MetaG Plot_35EnvironmentalOpen in IMG/M
3300010399Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-3EnvironmentalOpen in IMG/M
3300011421Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT769_2EnvironmentalOpen in IMG/M
3300012351Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_100_16 metaGEnvironmentalOpen in IMG/M
3300012685Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaGEnvironmentalOpen in IMG/M
3300012925Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012971Tropical forest soil microbial communities from Panama - MetaG Plot_1EnvironmentalOpen in IMG/M
3300012976Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_40cm_5_0_1 metaGEnvironmentalOpen in IMG/M
3300014157Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Met_20cm_2_24_1 metaGEnvironmentalOpen in IMG/M
3300014259Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailB_D1EnvironmentalOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015358Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Glu_40cm_5_24_1 metaGEnvironmentalOpen in IMG/M
3300017657Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_2_09212015EnvironmentalOpen in IMG/M
3300017939Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP12_10_MGEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018060Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_10_MGEnvironmentalOpen in IMG/M
3300018079Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_127_b1EnvironmentalOpen in IMG/M
3300018089Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MGEnvironmentalOpen in IMG/M
3300019789Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)EnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300023071Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S019-104C-5EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025910Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025911Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025930Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S5 (SPAdes)EnvironmentalOpen in IMG/M
3300025945Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026314Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143 (SPAdes)EnvironmentalOpen in IMG/M
3300026326Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_127 (SPAdes)EnvironmentalOpen in IMG/M
3300026335Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)EnvironmentalOpen in IMG/M
3300026358Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - CO-14-BEnvironmentalOpen in IMG/M
3300026529Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152 (SPAdes)EnvironmentalOpen in IMG/M
3300026532Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153 (SPAdes)EnvironmentalOpen in IMG/M
3300026538Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114 (SPAdes)EnvironmentalOpen in IMG/M
3300027671Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes)EnvironmentalOpen in IMG/M
3300027909Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)Host-AssociatedOpen in IMG/M
3300028380Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300030006Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT152D67EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031777Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031860Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032009Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f19EnvironmentalOpen in IMG/M
3300032060Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18EnvironmentalOpen in IMG/M
3300032064Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300032892Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5EnvironmentalOpen in IMG/M
3300033004Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.4EnvironmentalOpen in IMG/M
3300033412Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NCEnvironmentalOpen in IMG/M
3300034149Sediment microbial communities from East River floodplain, Colorado, United States - 20_j17EnvironmentalOpen in IMG/M
3300034164Sediment microbial communities from East River floodplain, Colorado, United States - 14_s17EnvironmentalOpen in IMG/M
3300034692Uranium-contaminated sediment microbial communities from bioreactor in Oak Ridge, Tennessee, United States - A1A0.3EngineeredOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI25384J37096_1005755613300002561Grasslands SoilVPAENRGAAFGWLGLGLQIGTAASPLVTGALAAVSIPGAFLFDGTLAWVAAGWLAFGARGLRSRSAQS*
JGI25617J43924_1002190613300002914Grasslands SoilAMGVQFGTAASPLVTGALAAVSIPGAYLLFGGLAWAGAGLLAVGGRGLRSYPERAAG*
Ga0062590_10122774423300004157SoilGWLALGVQVGTAISPLATGALAAVSLPGAFVLSGIMAWVAAALLFFGGRGLLSRRADAPA
Ga0062592_10188020313300004480SoilIVPAEHRGAAFGWLALGVQVGTATSPLAMGALASLSIAGAYVFDGALACLAAGMLALGWRQRTPLSEAQP*
Ga0066673_1002250343300005175SoilEHRGAAFGWLGMGLQVGTAASPLVTGAIAAVSIPSAFVFDGVLAWAAAALLAFGARGLRSRPAHS*
Ga0066679_1001569913300005176SoilGWLAFGLQFGTAASPLVTGGLAAVSLSGAYVFDGVLAWLAAALLAFGARGLRTRRERPDPT*
Ga0066679_1102255923300005176SoilEIVPSEHRGAAFGWLAFGLQFGTAASPLVTGGLAAVSLPGAYLFYGVLAWLAAALLAFGARGLRTRRERPDPT*
Ga0066690_1017229213300005177SoilGAAFGWLALGVQVGTAASPLVTGALAAVSLSGTFAFDGAVAWVAAGVLAFGARGLRTRREPADR*
Ga0066675_1086565613300005187SoilALGAQIVPSDNRGAAFGWLALGVQVGTAASPLVTGALAAVSLSGTFAFDGALAWVAAGVLAFGARGLRTRREPADR*
Ga0066388_10061298243300005332Tropical Forest SoilTYSLGAMIVPAEHRGAAFGWLGLGLQIGTAASPLASGMIAAVSIPGAFVFDGVLAWVAAGLLLFGARGLRARPHNA*
Ga0066388_10089503413300005332Tropical Forest SoilEHRGTAFGWLGLGLQVGTAISPLVSGALAAVSIPGAYIFYGALAWAAAALLAFGARGLRSRPPES*
Ga0066388_10250104523300005332Tropical Forest SoilLCLGAAITLTYSLGAMIVPAEHRGAAFGWLGLGLQIGTAASPLASGMIAAASIPGAFVFDGVLAWVAAGLLLFGARGLRSRPAHSA*
Ga0070687_10087597913300005343Switchgrass RhizosphereFGLQFGTAASPLVTGALAAVSLSGAYVFYGVLAWLAAALLAFGARGLRRPNASGLVG*
Ga0070669_10101879813300005353Switchgrass RhizosphereRGAAFGWLALGVQVGTAISPLATGALAAVSLPGAFVLSGIMAWVAAALLFFGGRGLLSRRADAPA*
Ga0066681_1000808313300005451SoilVPAEHRGAAFGWLGMGLQVGTAASPLVTGAIAAVSIPSAFVFDGVLAWAAAALLAFGARGLRSRPAHS*
Ga0070685_1053520823300005466Switchgrass RhizosphereGSLIVPAHDRGAAFGWLALGVQVGTAISPLATGALAAVSLPGAFVLSGIMAWVAAALLFFGGRGLLSRRADAPA*
Ga0070695_10073783523300005545Corn, Switchgrass And Miscanthus RhizosphereEHRGAAFGWLAFGLQFGTAASPLVTGALAAVSLPGAYVFDGVLAWLAAALLAFGARGLRTRRERADPT*
Ga0070693_10059896423300005547Corn, Switchgrass And Miscanthus RhizosphereSLGALIVPGDNRGAAFGWLALGVQVGTALSPLVTGGLAAVSLPGTFVFDGALALGAAALLAFGARGLNTRREGPG*
Ga0066701_1045946013300005552SoilAAIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVAAALLLFGARGLRRGVT*
Ga0066701_1074446213300005552SoilAAIVPAEHRGAAFGWLGLGLQIGTAASPLASGAMAAVSIPGAFLFDGALAWVAAALLLFGARGLRRGVT*
Ga0066692_1079784413300005555SoilIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVAAALLLFGARGLRSRRAHS*
Ga0066698_1041964123300005558SoilAAFGWLAFGLQFGTAASPLVTGALAAVSLPGAYVFYGALAWLAAALLAFGARGLRTKREAATG*
Ga0066700_1067427113300005559SoilSEHRGAAFGWLAFGLQFGTAASPLVTGALASISLPGAYLFDGVLAWSAAALLAFGARGLRTRRERPDPT*
Ga0066700_1103328613300005559SoilEHRGAAFGWLGLGLQIGTAASPLASGAMAAVSIPGAFLFDGALAWVAAALLLFGARGLRRGVT*
Ga0066700_1117304223300005559SoilSEHRGAAFGWLAFGLQFGTAASPLVTGALAAVSLPGAYVFDGVLAWLAAALLAFGARGLRTRRERPDPT*
Ga0066691_1042896513300005586SoilAAFGWLAFGLQFGTAASPLVTGALASISLPGAYLFDGVLAWSAAALLAFGARGLRTRRERPDPT*
Ga0066905_10056572613300005713Tropical Forest SoilGASRGAAFGWLAMGVQVGTATSPLLSGALAAVSLPGAYLVNGALAWAGAGLLAWAGGGLRSRRDKT*
Ga0066905_10071636223300005713Tropical Forest SoilFGWLGLGLQVGTAASPLVCGAIAAVSLPGAFLFEGALAWVAVAVLAFGARGLRARGV*
Ga0066696_1103604023300006032SoilLGVQVGTALSPLVTGGLAAVSLPGTFLFDGLLSVGAAALLAFGARGLRTRRTAADR*
Ga0066658_1021281023300006794SoilAFGWLAFGLQFGTAASPLVTGGLAAVSLPGAYLFYGVLAWLAAALLAFGARGLRTRRERPDPT*
Ga0066660_1012411913300006800SoilYSLGPAIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVAAALLLFGARGLRRGVT*
Ga0075430_10008860153300006846Populus RhizosphereLQFGTAASPLVTGALAAVSLPGAYLFYGALAWLAAALLAFGARGLRTRGERADPT*
Ga0075433_1082934123300006852Populus RhizosphereAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGGLAWVAAALLLFGARGLRSRPAHS*
Ga0075425_10080613213300006854Populus RhizosphereRGAAFGWLALGVQVGTALSPLVTGALAAVSLRGTFVFDGVLALAAASLLAFGARGLRTQRLAADR*
Ga0075426_1066409313300006903Populus RhizosphereGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGGLAWVAAALLLFGARGLRSRPAHS*
Ga0075436_10019636533300006914Populus RhizosphereAIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAASIPGAFLFDGALAWVAAALLLFGARGLRSRPAHS*
Ga0075419_1038343323300006969Populus RhizosphereAFGWLALGVQVGTAASPLAMGVLASLSIPLSYLVNGALAAVGAALLAFGWRSQRPSLRDARP*
Ga0075435_10153067023300007076Populus RhizosphereNRGAAFGWLALGVQVGTALSPLVTGGLAAVSLPGTFLFDGLLSVGAAALLAFGARGLRTRRDAADR*
Ga0099791_1036362923300007255Vadose Zone SoilEIVPSEHRGAAFGWLAFGLQFGTAASPLVTGALASISLPGAYVFDGVRAWSAAALLAFGARGLRTRRERPDPT*
Ga0075418_1313388213300009100Populus RhizosphereAIVPAEHRGTAFGWLGLALQIGTAASPLASGAIAAVSIPVAFVFDGALAWVAAALLLFGARGLRRRVG*
Ga0126374_1156729923300009792Tropical Forest SoilAFGWLGLGLQIGTAASPLASGMIAAASIPGAFIFDGALAWVAAGLLLFGARGLRARPHNA
Ga0105075_100426613300009799Groundwater SandAAFGWLAFGLQFGTAASPLVTGALASISLPAAYLFDGVLAWSAAALLAFGARGLRTRRERADPT*
Ga0105082_110454123300009814Groundwater SandENRGAAFGWLALGVQVGTAASPLVTGALAAVSLPGAYLFAGVLAWAAAGLLAFGSRSLRPRRGRS*
Ga0105064_110992313300009821Groundwater SandAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVAAALLLFGARGLRSRSAHS*
Ga0105074_108879813300010029Groundwater SandGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVAAALLLFGARGLRSRGAHS*
Ga0134082_1008995513300010303Grasslands SoilVPSEHRGAAFGWLAFGLQFGTAASPLVTGALAAVSLPGAYVFYGALAWLAAALLAFGARGLRTKREAATG*
Ga0134084_1001726443300010322Grasslands SoilSEHRGAAFGWLAFGLQFGTAASPLATGALAAVSLPGAYMFYGALAWLAAALLAFGARGLRRPNASGLDK*
Ga0134065_1032732013300010326Grasslands SoilFGLQFGTAASPLVTGALAAVSLPGAYVFDGVLAWLAAALLAFGARGLRTRRERPDPT*
Ga0134062_1063715413300010337Grasslands SoilAFLVPGEHRGAAFGWLALGVQIGAAASPLVTGALAAVSLPGAFLFFGGLAWVAAGLLAFGWRRAQPAR*
Ga0126370_1222372013300010358Tropical Forest SoilGAAFGWLALGVQVGTAISPLAMGALAAVSLSGAFVASGVLAWLALGVLVFGARGLLRRREPTEA*
Ga0126376_1132160613300010359Tropical Forest SoilAAFGWLGLGLQIGTAASPLASGAIAAVSIPGAFVFDGALAWVAAALLLFGARGLRRRPAA
Ga0126376_1258851123300010359Tropical Forest SoilMSHQGDVRAAFGWLAFGVQIGGAASPLVTGALAAISLRGAFLFYWALAWVAAGLLVVGARELWGRQQRFER*
Ga0126377_1137420313300010362Tropical Forest SoilGAAFGWLGLGLQVGTAASPLVCGAIAAVSLPGAFVFEGALAWVAVAVLAFGARGLRARAV
Ga0126377_1315158613300010362Tropical Forest SoilAFGWLALGTQVGTAASPLVMGALAAISIPGAYLLDGALAMLAFVLLTFGWRGQRPPVRA*
Ga0105239_1286531823300010375Corn RhizosphereGWLALGVQVGTAISPLATGALAAVSLPGAFVLSGLMAWVAAALLFFGGRGLLSRRADAPA
Ga0126381_10215349923300010376Tropical Forest SoilEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGVLAWVGAAVLYFGARGLRRRHAV*
Ga0126383_1033790033300010398Tropical Forest SoilLGAMIVPAEHRGAAFGWLGLGLQIGTAASPLASGMIAAVSIPGAFVFDGVLAWVAAGLLLFGARGLRARPHNA*
Ga0126383_1062634823300010398Tropical Forest SoilQNRGAAFGWLGLGLQVGTAISPLVVGALAAASLPGAFLFAGVLAWCAATLLGLGARDLLHRRATAE*
Ga0134127_1230517423300010399Terrestrial SoilGWLALGVQVGTAISPLATGALAAVSLPGAFVLSGLMAWVAAALLFFGGRGLLSRRADVPA
Ga0137462_111282123300011421SoilAFGWLALSVQVGTAVSPLATGALAAVSLPVAFLFDGALAWVAGGLLFFGARGLLARRD*
Ga0137386_1037217223300012351Vadose Zone SoilIVPAEHRGAAFGWLGLGLQVGTAASPLVCGAIAAVSLPGAFVFEGALAWVAGGVLAFGARGLRARAV*
Ga0137397_1116147413300012685Vadose Zone SoilLGAQIVPSDNRGAAFGWLALGVQVGTALSPLVTGGLAAVSVPGTFLFDGGLAMAAAALLGFGARGLRQARGVST*
Ga0137419_1011903833300012925Vadose Zone SoilAIVPAEHRGAAFGWLGLGLQIGTAASPLVSGALAAGSIPGAFLFDGALAWVAAALLLFGARGLRRGVT*
Ga0137407_1121044823300012930Vadose Zone SoilVPSEHRGAAFGWLAFGLQFGTAASPLVTGGLAAVSLPGAYLFYGVLAWLAAALLAFGARGLRTRRERPDPT*
Ga0126375_1069691413300012948Tropical Forest SoilPSHDRGAAFGWLGMGVQVGTAASPLVTGALAAVSLSGAYVFGGVLAWTGAGLLVFGARGLRVRPRSSRA*
Ga0126369_1141432913300012971Tropical Forest SoilFGWLAFGVQIGGAASPLVTGALAAISLPGAFVFYWALSWFAAALLAVGARDLWRRQQRLEG*
Ga0134076_1000425643300012976Grasslands SoilAAFGWLAFGLQFGTAASPLVTGALAAVSLPGAYVFDGVLAWLAAALLAFGARGLRTRRERPDPT*
Ga0134078_1011950323300014157Grasslands SoilEIVPSEHRGAAFGWLAFGLQFGTAASPLVTGALAAVSLPGAYVFDGVLAWLAAALLAFGARGLRTRCERPDPT*
Ga0075311_100200943300014259Natural And Restored WetlandsQRGAAFGWLALGVQFGTAASPLVTGALAAVSLPGAFLVCGALALAAGALLTLGTRGAR*
Ga0157376_1180294413300014969Miscanthus RhizosphereLGAAIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVAAALLLFGARGLRSRPAHS*
Ga0134089_1044470323300015358Grasslands SoilWLGLGLQIGTAASPLVTGALAAVSIPGAFLFDGTLAWVAAGWLAFGARGLRSRSAQS*
Ga0134074_108708113300017657Grasslands SoilEHRGAAFGWLGMGLQVGTAASPLVTGAIAAVSIPGAFVFDGVLAWAAAALLAFGARGLRSRPAHS
Ga0187775_1026846613300017939Tropical PeatlandGAAFGWLGLGLQIGTAASPLASGVLAAVSIPGAFIFDGGLAWVAAGLLLFGARGLRRRPA
Ga0184608_1014406533300018028Groundwater SedimentGWLALGVQFGTAASPLAMGGLAAISLPGAYVLDGALAWVAAGLLAFGWRSQPPPRSLTHS
Ga0187765_1070065713300018060Tropical PeatlandVIVPGHNRAAAFGWLSLGVQIGTALSPLVMGALAAASLPGAFLFNGALAWAGAAVLLFGARGLLSRRSAPS
Ga0184627_1038551723300018079Groundwater SedimentAYALGAEIVPAEHRGAAFGWLALGVQFGTATSPLAMGGLAAISLPGAYVLDGALAWVGAGLLVFGWRSQRQPLRDARS
Ga0187774_1046181213300018089Tropical PeatlandPAEHRGAAFGWLGLGLQIGTAASPLASGVLAAVSIPGAFIFDGGLAWVAAGLLLFGARGLRRRPAV
Ga0137408_112855013300019789Vadose Zone SoilAARRSDGAFGWLGLGLQVGTAASPLVCGAIAAVSLPGAFVFEGALAWVAVGVLAFGARGLRARAV
Ga0126371_1053933633300021560Tropical Forest SoilFGWLGLGLQVGTAISPLVVGALAAASLPGAFLFAGVLAWCAATLLALGARDLLHRRATAE
Ga0247752_103337523300023071SoilAHDRGAAFGWLALGVQVGTAISPLATGALAAVSLPGAFVLSGIMAWVAAALLFFGGRGLLSRRADAPA
Ga0207653_1006629013300025885Corn, Switchgrass And Miscanthus RhizosphereAFGWLALIVQVGTAVSPLATGALAAVTLPGAFLFDGALAWVAGGLLFFGARGLLARRD
Ga0207684_1154952823300025910Corn, Switchgrass And Miscanthus RhizosphereSLGAAIVPAENRGAAFGWLGLGLQIGTAASPLVTGALAAVSIPGAFLFDGTLAWVAAGWLAFGARGLRSRSAQS
Ga0207654_1019109333300025911Corn RhizosphereRGAAFGWLALGVQVGTAASPLVTGALAAISINGVYLLDGALAAVAAGLLTFGWRGQRPPIRATTS
Ga0207701_1028419633300025930Corn, Switchgrass And Miscanthus RhizosphereWLALGVQVGTAASPLVTGALAAISINGVYLLDGALAAVAAGLLTFGWRGQRPPIRATTS
Ga0207679_1051732413300025945Corn RhizosphereLGAAIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVAAALLLFGARGLRSRPAHS
Ga0209268_119715213300026314SoilAFLVPSEYRGAAFGWLALGVQIGAAASPLVTGALAAVSLPGAFLFFGGLAWVAAGLLAFGWRRPQPAR
Ga0209801_110346913300026326SoilGAAIVPAEHRGAAFGWLGLGLQIGTAASPLASGAMAAVSIPGAFLFDGALAWVAAALLLFGARGLRRGVT
Ga0209804_128009623300026335SoilGAAFGWLALGVQVGTAASPLVTGALAAVSLSGTFAFDGAVAWVAAGVLAFGARGLRTRREPADR
Ga0257166_103024013300026358SoilEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGVLAWVAAALLLFGARGLRSRRAHS
Ga0209806_115472613300026529SoilHRGAAFGWLAFGLQFGTAASPLVTGGLAAVSLPGAYLFYGVLAWLAAALLAFGARGLRTRRERPDPT
Ga0209160_129123313300026532SoilWLAFGLQFGTAASPLVTGALASISLPGAYLFDGVLAWSAAALLAFGARGLRTRRERPDPT
Ga0209056_1037045233300026538SoilPAEHRGAAFGWLGLGLQIGTAASPLASGAIAAVSIPGAFVFDGALAWVAAALLLFGARGLRSRPAHSA
Ga0209056_1056835413300026538SoilAAFGWLGLGLQIGTAASPLVTGALAAVSIPGAFLFDGTLAWVAAGWLAFGARGLRSRSAQ
Ga0209588_124263913300027671Vadose Zone SoilIVPSDNRAAAFGWLAMGVQFGTAASPLVTGALAAVSIPGAYLLFGGLAWAGAGLLAVGGRGLRSYPERAAG
Ga0209382_1225878923300027909Populus RhizosphereAFGWVALGVQVGTATSPLAMGALASVSIPGAYVFDGVLACVAAALLAFRWRDLPMPLRDARPSP
Ga0268265_1252142513300028380Switchgrass RhizosphereGWLALGTQVGTAISPLATGALAAVSLPGAFVLSGVMAWVAAALLVLGARGLLSRRADASP
Ga0307312_1016040533300028828SoilGSAFGWLALSVQVGTAVSPLATGALAAVSLPGAFLFDGALAWVAGGLLFFGARGLLARRG
Ga0299907_1099588513300030006SoilVQFGTAASPLAMGALASLNLGGAYVFGGALACLAAGLLAFGWRGPRPRPASAGPLAA
Ga0310886_1060661623300031562SoilIVPAEHRGAAFGWLALGVQVGTATSPLAMGALASLSIAGAYVFDGALACLAAGMLALGWRQRTPLSEAQP
Ga0307469_1065165033300031720Hardwood Forest SoilGAAFGWLALGVQVGTALSPLVTGGLAAVSLPGTFLFDGLLSVGAAALLAFGARGLRTRRDAADR
Ga0307469_1145195613300031720Hardwood Forest SoilAAFGWLALGVQVGTALSPLVTGGLAAVSLPGTFVFDGMLALGAAALLAFGARGLRAREAADR
Ga0307468_10064248123300031740Hardwood Forest SoilPAEHRGAAFGWLGLGLQIGTAASPLASGAIAAVSIPGAFVFDGALAWVAAALLLFGARGLRSRPLHSA
Ga0318509_1080179213300031768SoilAFGWLGLGLQVGTAISPLVSGALAAVSIPGAYIFYGVLAWAAAALLAFGARGLRSRPPES
Ga0318543_1011406633300031777SoilLTYSLGAAIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVGAAVLYFGARGLRRRHAV
Ga0318503_1025175423300031794SoilAITLTYSLGATIVPAEHRGAAFGWLGLGLQIGTAASPLASGAIAAVSIPGAFVFDGALAWVAAALLLFGARGLRRRPAA
Ga0318495_1010336733300031860SoilHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVGAAVLYFGARGLRRRHAV
Ga0310885_1041614423300031943SoilQRGAAFGWLALGVQVGTAASPLVTGALAAISIPGVYVLDGALALIAAALLAFGWRGQRPPLRATSS
Ga0310903_1015321923300032000SoilPAEHRGTAFGWLGLALQIGTAASPLASGAIAAVSIPVAFVFDGALAWVAAALLLFGARGLRRRVG
Ga0318563_1033253513300032009SoilYSLGASIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGVLAWVGAAVLYFGARGLRRRHAV
Ga0318505_1028950113300032060SoilAEHRGAAFGWLGLGLQIGTAASPLASGAIAAVSIPGAFVFDGALAWVAAALLLFGARGLRRRPAA
Ga0318510_1026878223300032064SoilRGAAFGWLGLGLQIGTAASPLASGAIAAVSIPGAFVFDGALAWVAAALLLFGARGLRRRPAA
Ga0318577_1006783233300032091SoilIVPAEHRGAAFGWLGLGLQIGTAASPLASGALAAVSIPGAFLFDGALAWVGAAVLYFGARGLRRRHAV
Ga0310889_1050548413300032179SoilVPGEQRGAAFGWLALGTQVGTAASPLVMGGLAAISIPGAYLLDGALALLAAGLLAFGWRGQRPPLRA
Ga0335081_1213875223300032892SoilLTYSLGAALVPAEHRGAAFGWLGLGLQIGTATSPLVCGTLAAVSLPGAYVFDAVVAWAAAALLAVGGRRLRRPQS
Ga0335084_1049880023300033004SoilPAEHRGAAFGWLGLGLQIGTAASPLATGALAAVSIPGAFLFDGALAWVAAGLLLFAARGLRARQAQP
Ga0310810_1033157833300033412SoilVPGDNRGAAFGWLALGVQVGTALSPLVTGGLAAVSLPGTFVFDGALALGAAALLAFGARGLNTRREGPG
Ga0364929_0028811_2_1753300034149SedimentFGWLGLGLQVGTAASPLVCGALAAISLPGAFVFEGVLAWVAVAVLAFGARGLRARAV
Ga0364940_0004128_3161_33763300034164SedimentVPAEHRGAAFGWLAFGLQFGTAASPLVTGALASVSLPGAYVFDGALAWAAAALLAFGARGLRTRRERSDPT
Ga0373917_0046800_465_6503300034692Sediment SlurryWLALGVQVGTAASPLAMGALASMSLSVAYVFDGALACVAAGLLAFGWRGPRARPAASGGS

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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