Metagenome Family F075132

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075132
Family Type	Metagenome
Number of Sequences	119
Average Sequence Length	38 residues
Representative Sequence	AYIDTFMVLSVGAAIMFCLAFVLKKNDPGGGGVRVAE
Number of Associated Samples	102
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	0.85 %
% of genes near scaffold ends (potentially truncated)	98.32 %
% of genes from short scaffolds (< 2000 bps)	93.28 %
Associated GOLD sequencing projects	98
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (96.639 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (23.529 % of family members)
Environment Ontology (ENVO)	Unclassified (35.294 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (52.101 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.85% β-sheet: 0.00% Coil/Unstructured: 66.15%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF13189	Cytidylate_kin2	73.95
PF00582	Usp	13.45
PF08570	DUF1761	1.68
PF12911	OppC_N	0.84
PF00027	cNMP_binding	0.84
PF00343	Phosphorylase	0.84
PF02656	DUF202	0.84
PF13561	adh_short_C2	0.84
PF01494	FAD_binding_3	0.84
PF02321	OEP	0.84
PF00408	PGM_PMM_IV	0.84
PF13602	ADH_zinc_N_2	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.68
COG1538	Outer membrane protein TolC	Cell wall/membrane/envelope biogenesis [M]	1.68
COG0033	Phosphoglucomutase/phosphomannomutase	Carbohydrate transport and metabolism [G]	0.84
COG0058	Glucan phosphorylase	Carbohydrate transport and metabolism [G]	0.84
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.84
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.84
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.84
COG1109	Phosphomannomutase	Carbohydrate transport and metabolism [G]	0.84
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	96.64 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	77.31 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	52.10 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15.97 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.10 %
Bryobacterales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales	8.40 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	6.72 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.10 %
Solibacteraceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae	8.40 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.72 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.10 %
Candidatus Solibacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	8.40 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.72 %
Unclassified	root	N/A	3.36 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	52.10 %
Candidatus Solibacter usitatus	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	7.56 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6.72 %
Unclassified	root	N/A	3.36 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003505\|JGIcombinedJ51221_10158245	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	916	Open in IMG/M
3300004091\|Ga0062387_100178133	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1258	Open in IMG/M
3300004092\|Ga0062389_101766144	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	799	Open in IMG/M
3300004092\|Ga0062389_103191804	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	614	Open in IMG/M
3300004635\|Ga0062388_100760965	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	913	Open in IMG/M
3300005332\|Ga0066388_102149804	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300005468\|Ga0070707_101688057	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300005530\|Ga0070679_101693597	All Organisms → cellular organisms → Bacteria → Acidobacteria	580	Open in IMG/M
3300005602\|Ga0070762_10386765	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	899	Open in IMG/M
3300005602\|Ga0070762_10832544	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	626	Open in IMG/M
3300005610\|Ga0070763_10645735	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	616	Open in IMG/M
3300005764\|Ga0066903_101496210	All Organisms → cellular organisms → Bacteria	1274	Open in IMG/M
3300006028\|Ga0070717_11161903	All Organisms → cellular organisms → Bacteria	703	Open in IMG/M
3300006028\|Ga0070717_11933895	All Organisms → cellular organisms → Bacteria	532	Open in IMG/M
3300006176\|Ga0070765_100292901	All Organisms → cellular organisms → Bacteria	1503	Open in IMG/M
3300006176\|Ga0070765_100326379	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1423	Open in IMG/M
3300006176\|Ga0070765_100683927	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	969	Open in IMG/M
3300009093\|Ga0105240_11141017	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300010043\|Ga0126380_11157644	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	663	Open in IMG/M
3300010343\|Ga0074044_11081634	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	525	Open in IMG/M
3300010358\|Ga0126370_12480916	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300010360\|Ga0126372_10420106	All Organisms → cellular organisms → Bacteria	1228	Open in IMG/M
3300010361\|Ga0126378_10560496	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1257	Open in IMG/M
3300010376\|Ga0126381_100245715	All Organisms → cellular organisms → Bacteria	2421	Open in IMG/M
3300010401\|Ga0134121_10336504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1347	Open in IMG/M
3300011270\|Ga0137391_11154491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300011442\|Ga0137437_1210459	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	675	Open in IMG/M
3300012202\|Ga0137363_10740985	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	832	Open in IMG/M
3300012362\|Ga0137361_11086108	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	721	Open in IMG/M
3300012917\|Ga0137395_10028011	All Organisms → cellular organisms → Bacteria	3368	Open in IMG/M
3300012957\|Ga0164303_11405504	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	522	Open in IMG/M
3300012971\|Ga0126369_10604494	All Organisms → cellular organisms → Bacteria	1167	Open in IMG/M
3300012989\|Ga0164305_11021429	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	704	Open in IMG/M
3300014159\|Ga0181530_10282588	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300014200\|Ga0181526_10937951	All Organisms → cellular organisms → Bacteria	544	Open in IMG/M
3300014325\|Ga0163163_11202595	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300014325\|Ga0163163_12178369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300015264\|Ga0137403_10776668	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	815	Open in IMG/M
3300015371\|Ga0132258_12261986	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1364	Open in IMG/M
3300016270\|Ga0182036_10428701	All Organisms → cellular organisms → Bacteria → Acidobacteria	1036	Open in IMG/M
3300016357\|Ga0182032_11214982	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	649	Open in IMG/M
3300016445\|Ga0182038_10333284	All Organisms → cellular organisms → Bacteria	1251	Open in IMG/M
3300017822\|Ga0187802_10456613	All Organisms → cellular organisms → Bacteria → Acidobacteria	507	Open in IMG/M
3300017930\|Ga0187825_10406762	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	524	Open in IMG/M
3300017933\|Ga0187801_10087344	All Organisms → cellular organisms → Bacteria	1171	Open in IMG/M
3300017942\|Ga0187808_10615666	All Organisms → cellular organisms → Bacteria → Acidobacteria	504	Open in IMG/M
3300017972\|Ga0187781_11003546	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	610	Open in IMG/M
3300017974\|Ga0187777_10301949	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1094	Open in IMG/M
3300017995\|Ga0187816_10131961	All Organisms → cellular organisms → Bacteria	1077	Open in IMG/M
3300018006\|Ga0187804_10264582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	744	Open in IMG/M
3300018006\|Ga0187804_10589869	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300018043\|Ga0187887_10480367	All Organisms → cellular organisms → Bacteria → Acidobacteria	733	Open in IMG/M
3300018044\|Ga0187890_10409338	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	761	Open in IMG/M
3300018429\|Ga0190272_11211153	Not Available	743	Open in IMG/M
3300020022\|Ga0193733_1097961	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	819	Open in IMG/M
3300020199\|Ga0179592_10449233	All Organisms → cellular organisms → Bacteria → Acidobacteria	557	Open in IMG/M
3300020579\|Ga0210407_10398911	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	1076	Open in IMG/M
3300020579\|Ga0210407_11203279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	570	Open in IMG/M
3300020580\|Ga0210403_11064582	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	630	Open in IMG/M
3300020581\|Ga0210399_10513613	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	995	Open in IMG/M
3300021046\|Ga0215015_10149526	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	643	Open in IMG/M
3300021168\|Ga0210406_11067887	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	596	Open in IMG/M
3300021170\|Ga0210400_10578600	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300021171\|Ga0210405_10259106	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1376	Open in IMG/M
3300021171\|Ga0210405_10305252	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1258	Open in IMG/M
3300021402\|Ga0210385_10854777	All Organisms → cellular organisms → Bacteria	698	Open in IMG/M
3300021403\|Ga0210397_10334041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1120	Open in IMG/M
3300021406\|Ga0210386_10469363	All Organisms → cellular organisms → Bacteria → Acidobacteria	1087	Open in IMG/M
3300021411\|Ga0193709_1092262	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	661	Open in IMG/M
3300021420\|Ga0210394_10060787	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3284	Open in IMG/M
3300021420\|Ga0210394_11133075	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	674	Open in IMG/M
3300021432\|Ga0210384_11143080	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	682	Open in IMG/M
3300021433\|Ga0210391_10101041	All Organisms → cellular organisms → Bacteria	2274	Open in IMG/M
3300021433\|Ga0210391_10928638	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	678	Open in IMG/M
3300021478\|Ga0210402_11076022	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	731	Open in IMG/M
3300021479\|Ga0210410_10749178	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	860	Open in IMG/M
3300021559\|Ga0210409_11362279	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	585	Open in IMG/M
3300021560\|Ga0126371_10067706	All Organisms → cellular organisms → Bacteria	3462	Open in IMG/M
3300023250\|Ga0224544_1033854	All Organisms → cellular organisms → Bacteria → Acidobacteria	721	Open in IMG/M
3300025588\|Ga0208586_1091659	Not Available	661	Open in IMG/M
3300025913\|Ga0207695_11670041	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	518	Open in IMG/M
3300025914\|Ga0207671_10794826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	750	Open in IMG/M
3300025932\|Ga0207690_10286202	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1285	Open in IMG/M
3300026557\|Ga0179587_11001089	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	550	Open in IMG/M
3300026845\|Ga0207760_116544	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	598	Open in IMG/M
3300027528\|Ga0208985_1108369	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	532	Open in IMG/M
3300027609\|Ga0209221_1060298	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	999	Open in IMG/M
3300027701\|Ga0209447_10167719	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	603	Open in IMG/M
3300027727\|Ga0209328_10064535	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1122	Open in IMG/M
3300027824\|Ga0209040_10404723	Not Available	633	Open in IMG/M
3300027882\|Ga0209590_10507550	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	779	Open in IMG/M
3300027889\|Ga0209380_10639072	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300028746\|Ga0302233_10040343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1944	Open in IMG/M
3300028906\|Ga0308309_10424684	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1142	Open in IMG/M
3300031234\|Ga0302325_10189768	All Organisms → cellular organisms → Bacteria → Acidobacteria	3565	Open in IMG/M
3300031234\|Ga0302325_13168344	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300031234\|Ga0302325_13363771	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	505	Open in IMG/M
3300031561\|Ga0318528_10084915	All Organisms → cellular organisms → Bacteria	1646	Open in IMG/M
3300031708\|Ga0310686_117555829	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	525	Open in IMG/M
3300031708\|Ga0310686_118618442	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	607	Open in IMG/M
3300031753\|Ga0307477_10312478	All Organisms → cellular organisms → Bacteria	1084	Open in IMG/M
3300031754\|Ga0307475_10760601	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter → Candidatus Solibacter usitatus	770	Open in IMG/M
3300031763\|Ga0318537_10373956	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	526	Open in IMG/M
3300031782\|Ga0318552_10430628	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	673	Open in IMG/M
3300031798\|Ga0318523_10165857	All Organisms → cellular organisms → Bacteria	1101	Open in IMG/M
3300031823\|Ga0307478_10578266	All Organisms → cellular organisms → Bacteria	939	Open in IMG/M
3300031823\|Ga0307478_10639179	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	891	Open in IMG/M
3300031833\|Ga0310917_10628266	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300031835\|Ga0318517_10355519	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	662	Open in IMG/M
3300031880\|Ga0318544_10364856	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	561	Open in IMG/M
3300031897\|Ga0318520_10300388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967	Open in IMG/M
3300031962\|Ga0307479_11794193	All Organisms → cellular organisms → Bacteria → Acidobacteria	565	Open in IMG/M
3300032174\|Ga0307470_10467875	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	911	Open in IMG/M
3300032174\|Ga0307470_10984712	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	669	Open in IMG/M
3300032174\|Ga0307470_11270362	All Organisms → cellular organisms → Bacteria → Acidobacteria	601	Open in IMG/M
3300032897\|Ga0335071_10424757	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Bryobacterales → Solibacteraceae → Candidatus Solibacter	1282	Open in IMG/M
3300033289\|Ga0310914_11007886	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	733	Open in IMG/M
3300033412\|Ga0310810_10082074	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3881	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.12%
Host-Associated	Host-Associated	5.88%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	78.15%
Aquatic	Environmental → Aquatic	15.97%
Plants	Host-Associated → Plants	5.88%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	73.95%
Freshwater	Environmental → Aquatic → Freshwater	14.29%
Peat	Environmental → Terrestrial → Peat	4.20%
Rhizosphere	Host-Associated → Plants → Rhizosphere	3.36%
Sediment	Environmental → Aquatic → Sediment	1.68%
Roots	Host-Associated → Plants → Roots	1.68%
Rhizoplane	Host-Associated → Plants → Rhizoplane	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	54.62%
Loam	Environmental → Terrestrial → Soil → Loam	15.97%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	14.29%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	4.20%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	3.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	1.68%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.68%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	32.77%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.61%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	8.40%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	5.88%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	4.20%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	3.36%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.36%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.52%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	1.68%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.68%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.84%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	23.53%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.56%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.72%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	6.72%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	6.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	5.88%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	5.88%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.04%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	3.36%
Palsa	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa	3.36%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	2.52%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	2.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.52%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	2.52%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	1.68%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	1.68%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.68%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	1.68%
Soil	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Soil	0.84%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.84%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	0.84%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	0.84%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	0.84%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.84%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.84%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005602	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006050	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011442	Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT138_2	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015264	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017942	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_3	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017995	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_1	Environmental	Open in IMG/M
3300018006	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_4	Environmental	Open in IMG/M
3300018043	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10	Environmental	Open in IMG/M
3300018044	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_21_10	Environmental	Open in IMG/M
3300018429	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 T	Environmental	Open in IMG/M
3300020022	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1s2	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021402	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-O	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021411	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3c2	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300023250	Peat soil microbial communities from Stordalen Mire, Sweden - 717 P1 10-14	Environmental	Open in IMG/M
3300025588	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 53-3 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025914	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025932	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300027528	Forest soil microbial communities from El Dorado National Forest, California, USA - Mediterranean Blodgett CA Ref_O1 (SPAdes)	Environmental	Open in IMG/M
3300027609	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_O2 (SPAdes)	Environmental	Open in IMG/M
3300027701	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028746	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031234	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Palsa_T0_2	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031763	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29	Environmental	Open in IMG/M
3300031782	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f20	Environmental	Open in IMG/M
3300031798	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f19	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031835	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f21	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032897	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.5	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGIcombinedJ51221_101582451	3300003505	Forest Soil	AATLAYIDIFMVLCVVSGIMFFLAFLLKKNDPGGGRVLAE*
Ga0062387_1001781333	3300004091	Bog Forest Soil	AASLAYIDTFMVLCVGAGIMFFLSFALKKNDPGGGGPRVVE*
Ga0062389_1017661442	3300004092	Bog Forest Soil	ASLAYVDTFKVLAVGAVIMFLMAFVLKKNDPGGRGHVIVD*
Ga0062389_1031918042	3300004092	Bog Forest Soil	QATTLAYIDIFMVLCVISGIMFFLAFLLKKNDPGGGRVLAE*
Ga0062388_1007609652	3300004635	Bog Forest Soil	QAASLAYIDTFMVLCVAAGIMFFLAFLLKKNDPGAGHVAVE*
Ga0066388_1021498041	3300005332	Tropical Forest Soil	ASLAYIDTFMVLSVAAGIMFLLSFLLKRNDPVSGGVHVAE*
Ga0070707_1016880571	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	TLAYVDTFMVLCVGSAIMFGMAFFFKKNDPGGGAAAAPE*
Ga0070679_1016935971	3300005530	Corn Rhizosphere	AGTLAYVDTFMVLSIAAGIMFFLSFMLKRNDPASGGMHVAE*
Ga0070762_103867651	3300005602	Soil	SAEAYIDTFMVLAVGSAIMIFLSFLLKKNELGGGRIVAE*
Ga0070762_108325441	3300005602	Soil	AAYIDTFMVLAVGSGIMFFLAFLLKKNDPGGGHVVAE*
Ga0070763_106457351	3300005610	Soil	LDTYMVLAVGAGVMFILAFVLRRNDPHAGGEVAVG*
Ga0066903_1014962101	3300005764	Tropical Forest Soil	AYIDTFMVLSVASAIMFCLSFALRKNDPGGGGVRMAE*
Ga0070717_111619032	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	LAYVDTFMVLSVGAAIMFCLAFVLKKNDPGGGGVRVAE*
Ga0070717_119338952	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	AQAASLAYVDTFMVLAVGAAIMFWLAFVLKKNDPGGGGVRVVE*
Ga0075028_1000675953	3300006050	Watersheds	QAQAGASAYVDTFMVLAVGSGIMFFLAFILKRNEPGGGHVVAE*
Ga0070765_1002929013	3300006176	Soil	IDTFMVLAVGAAIMFCLTFVLKKNNPGAGGRVVVE*
Ga0070765_1003263791	3300006176	Soil	QAQATTLAYIDIFMVLCVISGIMFFLAFLLKKNDPGGGRVLAE*
Ga0070765_1006839272	3300006176	Soil	AASLAYIDTFMVLCVGSAIMFGLAFLLKKNDPGGGGVRIAE*
Ga0105240_111410171	3300009093	Corn Rhizosphere	AYIDTFMVLSIGSAIMIFLAFALKKNDPGGGGHVVAE*
Ga0126380_111576441	3300010043	Tropical Forest Soil	QAQAASLAYVDVFMVLAVGAAIMFCLSFALKKNDPSGGGHVVVE*
Ga0074044_110816342	3300010343	Bog Forest Soil	VDVFMVLAVVGGIMFFLAFTLGKNEPGGGHVIAE*
Ga0126370_124809162	3300010358	Tropical Forest Soil	AYIDTYMVLCVGAVIMFFISFFLKKNDPGSGGVVVE*
Ga0126372_104201063	3300010360	Tropical Forest Soil	GALAYIDTFMVLSIAAGIMFFLSFLLKGNDPGSGGGHVAE*
Ga0126378_105604961	3300010361	Tropical Forest Soil	ASLAYIDTYMVLCVGAVIMFFISFFLKKNDPGSGGVVVE*
Ga0126381_1002457151	3300010376	Tropical Forest Soil	IDTFMVLSVASAIMFCLSFALKKNDPGGGGVRVAE*
Ga0134121_103365041	3300010401	Terrestrial Soil	VQAQASAAAYIDTFMVLSIGSAIMIFLAFALKKNDPGGGGHVVAE*
Ga0137391_111544912	3300011270	Vadose Zone Soil	AYIDTFMVLSVGSALMIFLSFILKKNELGGGRIVAE*
Ga0137437_12104592	3300011442	Soil	DTFMVLAVAAAIMFFLSFILRKNDPGGGGRVLAE*
Ga0137363_107409851	3300012202	Vadose Zone Soil	MAAYARIYQLVQGQASAAAYIDTFMVLSVGSALMIFLSFILKKNELGGGRIVAE*
Ga0137361_110861081	3300012362	Vadose Zone Soil	ASLAYIDVFMVLAVGAAIMFCLSFALKKNDPGGGGRVVVE*
Ga0137395_100280111	3300012917	Vadose Zone Soil	DTFMVLAVGAAIMFFLAFILRKNDPGGGGHIAVD*
Ga0164303_114055041	3300012957	Soil	LAYVDVFMVLAVGAAIMFCLSFALKKNDPGGGAVVEVG*
Ga0126369_106044941	3300012971	Tropical Forest Soil	ASLAYIDTFMVLSVAAGIMFFLSFMLKRNDLASGGVHVAE*
Ga0164305_110214291	3300012989	Soil	YIDTFMVLCIAAGIMFFLSFLLKRNDPGGGGVHIAE*
Ga0181530_102825883	3300014159	Bog	QSQTLAYVDTFMVLAVMAGIMFVLSFIVRKNNPAGGGPVVAE*
Ga0181526_109379512	3300014200	Bog	AYIDTFMVLSVGAAIMFCLAFVLKKNDPGGGGVRVAE*
Ga0163163_112025951	3300014325	Switchgrass Rhizosphere	QAQASAAAYIDTFMVLSIGSAIMIFLAFALKKNDPGGGGHVVAE*
Ga0163163_121783692	3300014325	Switchgrass Rhizosphere	LAYIDTFMVLCIAAGIMFFLSFLLKRNDPGGGGVHIAE*
Ga0137403_107766682	3300015264	Vadose Zone Soil	ASLAYIDVFMVLAVGAAIMFCLSFALKKNDPGGGGQVIVE*
Ga0132258_122619864	3300015371	Arabidopsis Rhizosphere	IDTFMILSVAAGIMFFLSFMLKKNDPGGGVHVAE*
Ga0182036_104287012	3300016270	Soil	AQAASLAYIDTFMVLCVGAAIMFLLTFFLKKNDPGGAAVRME
Ga0182032_112149822	3300016357	Soil	YVDTFMVLAVGSAIMFFLSFILKKNSPGAGGDLAVG
Ga0182038_103332844	3300016445	Soil	ADLAYVDTFMVLAVGSAIMFFLSFILKKNSPGSGGDLAAG
Ga0187802_104566131	3300017822	Freshwater Sediment	IDTFMVLCVASAIMFFLAFVLKKNDPGGGGVRVME
Ga0187825_104067621	3300017930	Freshwater Sediment	ASAQAYVDTFMVLAVGSGIMFFLSFILKGNDPSGGGHVVAE
Ga0187801_100873441	3300017933	Freshwater Sediment	IDTFMVLAVASSIMFFLAFILKGNRPGAGGDLAVG
Ga0187808_106156661	3300017942	Freshwater Sediment	AASLAYIDTFMVLCVASAIMFFLAFVLKKNDPGGGGVRVME
Ga0187781_110035462	3300017972	Tropical Peatland	YIDTFMVLSVGAAVMFFLSFLLKKNEPGGGMRAAE
Ga0187777_103019491	3300017974	Tropical Peatland	QAASLAYLDTFMVLSVGAAIMFCLAFALKKNDPGGGGLAVAE
Ga0187816_101319613	3300017995	Freshwater Sediment	SGAAAYVDTFMVLAVGSGIMFFLAFILRKNDPGGGHVVAE
Ga0187804_102645822	3300018006	Freshwater Sediment	YIDAFWVLSVGAAIMFCLSFLMKKNDPHVGGPAAVG
Ga0187804_105898691	3300018006	Freshwater Sediment	AGAAAYIDTFMVLAVGSAIMFFLAFILKKNDPGGGHVVAE
Ga0187887_104803671	3300018043	Peatland	IDTFMVLCVGSAIMFFLAFVLKKNEPGGGGVRVAE
Ga0187890_104093382	3300018044	Peatland	AYVDTFMVLAVAGGIMFFLAFALGRNEPGGGQVIAE
Ga0190272_112111531	3300018429	Soil	YVDVFSLLAVLAALMFALSFALKKNQVGGAHGVVE
Ga0193733_10979611	3300020022	Soil	AYVDTFMVLAVGAAIMFCLAFVLKKNDPGGGGRVAVD
Ga0179592_104492332	3300020199	Vadose Zone Soil	IDTFMVLCVGAAIMFCLAFVLKKNDPGAGGVRVAE
Ga0210407_103989113	3300020579	Soil	LAYVDTFMVLCVGAGIMFFLSFLLKKNEPGGGGELAAG
Ga0210407_112032792	3300020579	Soil	ASMAYVDTFMVLCVGAAIMFVLAFFLKKNEPGGGMTVAE
Ga0210403_110645822	3300020580	Soil	VDTFMVLCVGAAIMFFLSFALKKNEPGGGADLAAG
Ga0210399_105136131	3300020581	Soil	QAQASAAAYIDTFMVLAVGSAMMIFLAFVLKKNDPGGGGHVVAE
Ga0215015_101495262	3300021046	Soil	YIDTFMVLAVGAAMMFCLTFVLKKNDPGGGGRVAVE
Ga0210406_110678872	3300021168	Soil	IDTFMVLAVGAGIMFFLAFVLKKNEPGGGGAVEVG
Ga0210400_105786001	3300021170	Soil	IDMFWVLCVGAAIMFLLSFALRKNQVGAGRQVALE
Ga0210405_102591061	3300021171	Soil	AQASAAAYIDTFMVLAVGSACMIFLAFILKKNDPGGGHVVAE
Ga0210405_103052521	3300021171	Soil	DTFMVLAVGAGIMFFLAFMLKRNDPGGGGAELAAG
Ga0210385_108547772	3300021402	Soil	IDTFMVLAAAAGIMFFLSFMLKRNNPASGGVHVAE
Ga0210397_103340413	3300021403	Soil	VDTFMVLAVGAGIMFFLAFLLKKNDPGGGGRIIVD
Ga0210386_104693633	3300021406	Soil	IDTFMVLAVGAAIMFCLAFFLKKNDPGAGGLTVAE
Ga0193709_10922622	3300021411	Soil	YIDTFMVLAVGAGIMFFLAFVLKTNEPGGGGAVEVG
Ga0210394_100607876	3300021420	Soil	TLAYIDIFMVLCVISGIMFFLAFLLKKNDPGGGRVLAE
Ga0210394_111330752	3300021420	Soil	SLAYVDTFMVLAVGAGIMFFLAFLLKKNDPGGGGRIIVE
Ga0210384_111430802	3300021432	Soil	QATTLAYIDIFMVLCVVSGIMFFLAFALKKNDPGGGRVLAE
Ga0210391_101010411	3300021433	Soil	AYIDTFMVLAVGSAIMIFLSFLLKKNELGGGRIVAE
Ga0210391_109286381	3300021433	Soil	QATTLAYIDIFMVLCVISGIMFFLAFLLKKNDPGGGRVLAE
Ga0210402_110760221	3300021478	Soil	MAYIDMYWVLTVGTAMMFFLFFLLKKNDPRAGGHVAVH
Ga0210410_107491781	3300021479	Soil	AYIDTFMVLAVGAAIMFCLAFFLKANDPGAGGLTVAE
Ga0210409_113622791	3300021559	Soil	YIDTFMVLAVGSGIMFFLSFILKRNDPGGGGHVAVE
Ga0126371_100677061	3300021560	Tropical Forest Soil	YIDTFMVLSIASLIMFCLSFVLKKNDPGGGGVRVAE
Ga0224544_10338541	3300023250	Soil	SLAYIDTFMVLCVVAGIMFCLAFVLKKNDPGGGGVRVVE
Ga0208586_10916592	3300025588	Arctic Peat Soil	TEAYIDTFMVLAIGSAIMFVLSFALKKNDPRGGHVVAE
Ga0207695_116700412	3300025913	Corn Rhizosphere	YIDTFMVLSIGSAIMIFLAFALKKNDPGGGGHVVAE
Ga0207671_107948262	3300025914	Corn Rhizosphere	QAQASAAAYIDTFMVLSIGSAIMIFLAFALKKNDPGGGGHVVAE
Ga0207690_102862023	3300025932	Corn Rhizosphere	LAYVDTFMVLSIAAGIMFFLSFMLKRNDPASGGMHVAE
Ga0179587_110010892	3300026557	Vadose Zone Soil	GGYARIYQLVQGQASAAAYIDTFMVLSVGSALMIFLSFILKKNELGGGRIVAE
Ga0207760_1165441	3300026845	Tropical Forest Soil	AYVDTFMVLAVGSAIMFFLSFALKKNAPGGGGEMAAG
Ga0208985_11083691	3300027528	Forest Soil	KATTLAYIDIFMVLCVVSGIMFFLAFALKKNDPGGGRVLAE
Ga0209221_10602981	3300027609	Forest Soil	YIDTFMVLCVGSAIMFGLAFALKKNDPGGGGVRVME
Ga0209447_101677192	3300027701	Bog Forest Soil	TLAYIDIFMVLCVVSGIMFFLAFLLKRNDPGGGRVLAE
Ga0209328_100645351	3300027727	Forest Soil	QATTLAYIDIFMVLCVVSGIMFFLAFALNKNDPGGGRVLAE
Ga0209040_104047231	3300027824	Bog Forest Soil	YQSILAQASGAAYIDTFMVLCVGSVVMFFLSFALRKNDPSGGHMVAE
Ga0209590_105075502	3300027882	Vadose Zone Soil	ATSLAYIDIFMVLCVASAIMFVLSFLLEKNDPGGGRFSPE
Ga0209380_106390722	3300027889	Soil	AQSSAQAYIDTFMVLAVGSGIMFFLSFILKRNDPGGGGHVAVE
Ga0302233_100403434	3300028746	Palsa	IYTFMVLCVGAAIMFGLAFVLKKNDPGGGGPRVME
Ga0308309_104246842	3300028906	Soil	LAYIDIFMVLCVVSGIMFFLAFALKKNDPGGGRVLAE
Ga0302325_101897681	3300031234	Palsa	QAASLAYVDTFMVLCVGSAIMFCLAFLLKKNDPGGGGAHVAE
Ga0302325_131683442	3300031234	Palsa	YIDTFMVLAVGSAIMVFLAFILRKNDPGGGGEMAVG
Ga0302325_133637711	3300031234	Palsa	SLAYIDTFQVLCVGSAIMFCLAFVLKKNEPGGGGAHVAE
Ga0318528_100849153	3300031561	Soil	AYVDTFMVLAVGSAIMFFLAFALKKNSPGAGGEMAAG
Ga0310686_1175558291	3300031708	Soil	YIDTFMVLAVGAAIMFCLTFALKKNDPGGGGNVEAG
Ga0310686_1186184421	3300031708	Soil	YIDTFMVLSVGAAIMFCLAFVLKKNDPGGGGVRVAE
Ga0307477_103124783	3300031753	Hardwood Forest Soil	YIDTFMVLAVGAGIMFFLAFMLKRNEPGGGGATIAE
Ga0307475_107606012	3300031754	Hardwood Forest Soil	YIDTFKVLAVGAGIMFFLAFLLKKNDPGAGGVRVAE
Ga0318537_103739561	3300031763	Soil	VDTFMVLAVGSAIMFLLSFILKKNSPGAGGDLAVG
Ga0318552_104306282	3300031782	Soil	VDTFMVLAVGSAIMFFLAFALKKNSPGAGGEMAAG
Ga0318523_101658571	3300031798	Soil	YVDTFMVLAVGSAIMFFLAFALKKNSPGAGGEMAAG
Ga0307478_105782661	3300031823	Hardwood Forest Soil	VDTFMVLCVGAAIMFFLSFALKKNDPGAGGVRVAE
Ga0307478_106391792	3300031823	Hardwood Forest Soil	ASAAAYIDTFMVLSVGSAIMILLAFVLKKNDLGGGGRVAVE
Ga0310917_106282661	3300031833	Soil	STRTFGIDTFMVLAVGAAIMFCLAFFLKRNDPGAGGLTVAE
Ga0318517_103555191	3300031835	Soil	VDTFMVLAVGSAIMFFLAFALKKNTPGGGGELAAG
Ga0318544_103648561	3300031880	Soil	YVDTFMVLAVGSAIMFFLSFILKKNSPGSGGDLAVG
Ga0318520_103003883	3300031897	Soil	AYVDTFMVLAVGSAIMFFLAFALKKNTPGGGGELAAG
Ga0307479_117941931	3300031962	Hardwood Forest Soil	VDTFMVLAVGAAIMFCLAFALKKNDPGGGGVRVVE
Ga0307470_104678751	3300032174	Hardwood Forest Soil	YIDTFMVLAVGAAIMFCLAFFLKANDPGAGGLTVAE
Ga0307470_109847121	3300032174	Hardwood Forest Soil	LAYVDVFMVLAVGAAIMFCLSFALKKNDPGGSGHVVVE
Ga0307470_112703621	3300032174	Hardwood Forest Soil	YIDTFMVLSVAAGVMFFLSFMLKRNDPASGGVHVAE
Ga0335071_104247571	3300032897	Soil	SLLAQAATMAYLDTFMVLSVGAAIMFALAFILKKNQPGGGGDLAVG
Ga0310914_110078861	3300033289	Soil	ATTLAYIDIFMVLCVVSGIMFFLAFALKKNDPGGGRVLAE
Ga0310810_100820745	3300033412	Soil	TLAYIDTFMVLSIAAGIMFFLSFFLKKNDPGGGGVHIAE

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075132

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences