Metagenome / Metatranscriptome Family F075141

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075141
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	50 residues
Representative Sequence	MNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Number of Associated Samples	86
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.92 %
% of genes near scaffold ends (potentially truncated)	36.13 %
% of genes from short scaffolds (< 2000 bps)	85.71 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (56.303 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (34.454 % of family members)
Environment Ontology (ENVO)	Unclassified (39.496 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (60.504 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Fibrous	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 20.78% β-sheet: 0.00% Coil/Unstructured: 79.22%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.32
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.32
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF07369	DUF1488	7.56
PF08734	GYD	4.20
PF00211	Guanylate_cyc	3.36
PF00072	Response_reg	2.52
PF04392	ABC_sub_bind	2.52
PF00496	SBP_bac_5	1.68
PF11752	DUF3309	1.68
PF12773	DZR	1.68
PF10282	Lactonase	1.68
PF13432	TPR_16	0.84
PF00583	Acetyltransf_1	0.84
PF02737	3HCDH_N	0.84
PF01738	DLH	0.84
PF01522	Polysacc_deac_1	0.84
PF13565	HTH_32	0.84
PF07045	DUF1330	0.84
PF03237	Terminase_6N	0.84
PF11799	IMS_C	0.84
PF00589	Phage_integrase	0.84
PF08448	PAS_4	0.84
PF08402	TOBE_2	0.84
PF13424	TPR_12	0.84
PF02518	HATPase_c	0.84
PF00561	Abhydrolase_1	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	4.20
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	3.36
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.52
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.84
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.84
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.84
COG0726	Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family	Cell wall/membrane/envelope biogenesis [M]	0.84
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.84
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.84
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.84
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.84
COG5470	Uncharacterized conserved protein, DUF1330 family	Function unknown [S]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	57.14 %
Unclassified	root	N/A	42.86 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	57.14 %
Unclassified	root	N/A	42.86 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	56.30 %
Unclassified	root	N/A	42.86 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	36.13 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %
unclassified Bacteria	no rank	All Organisms → cellular organisms → Bacteria → unclassified Bacteria	0.84 %
Sar	clade	All Organisms → cellular organisms → Eukaryota → Sar	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.73 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.84 %
Rhizaria	clade	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria	0.84 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.84 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	6.72 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.68 %
Dehalococcoidia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
Retaria	clade	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria	0.84 %
Alteromonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales	0.84 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.68 %
Pseudoalteromonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae	0.84 %
unclassified Dehalococcoidia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia	0.84 %
Foraminifera	phylum	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera	0.84 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.68 %
Monothalamids	clade	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids	0.84 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.84 %
Pseudoalteromonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.68 %
Pseudoalteromonas rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → Pseudoalteromonas rubra	0.84 %
Reticulomyxidae	family	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae	0.84 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.68 %
Reticulomyxa	genus	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa	0.84 %
Pseudoalteromonas rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → Pseudoalteromonas rubra	0.84 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	42.86 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.88 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	1.68 %
Reticulomyxa filosa	species	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	0.84 %
Pseudoalteromonas rubra	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → Pseudoalteromonas rubra	0.84 %
Dehalococcoidia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	0.84 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	0.84 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.84 %
bacterium	species	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004633\|Ga0066395_10749605	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300005177\|Ga0066690_10779281	Not Available	624	Open in IMG/M
3300005178\|Ga0066688_10804667	Not Available	587	Open in IMG/M
3300005184\|Ga0066671_10417804	Not Available	860	Open in IMG/M
3300005332\|Ga0066388_102896430	All Organisms → cellular organisms → Bacteria	877	Open in IMG/M
3300005332\|Ga0066388_104256927	Not Available	729	Open in IMG/M
3300005332\|Ga0066388_107858899	Not Available	534	Open in IMG/M
3300005434\|Ga0070709_10848473	All Organisms → cellular organisms → Bacteria	720	Open in IMG/M
3300005435\|Ga0070714_100266726	All Organisms → cellular organisms → Bacteria → Proteobacteria	1587	Open in IMG/M
3300005435\|Ga0070714_100858276	All Organisms → cellular organisms → Bacteria	880	Open in IMG/M
3300005436\|Ga0070713_100659475	All Organisms → cellular organisms → Bacteria → Proteobacteria	997	Open in IMG/M
3300005436\|Ga0070713_100862299	Not Available	870	Open in IMG/M
3300005436\|Ga0070713_102420627	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300005439\|Ga0070711_100158140	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1715	Open in IMG/M
3300005467\|Ga0070706_100657880	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	972	Open in IMG/M
3300005471\|Ga0070698_100054593	All Organisms → cellular organisms → Bacteria → Proteobacteria	4055	Open in IMG/M
3300005536\|Ga0070697_100416500	Not Available	1167	Open in IMG/M
3300005546\|Ga0070696_100810179	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	771	Open in IMG/M
3300005560\|Ga0066670_10748194	Not Available	592	Open in IMG/M
3300005569\|Ga0066705_10936600	Not Available	514	Open in IMG/M
3300005574\|Ga0066694_10050010	All Organisms → cellular organisms → Bacteria → Acidobacteria	1902	Open in IMG/M
3300005575\|Ga0066702_10477298	All Organisms → cellular organisms → Bacteria	762	Open in IMG/M
3300005576\|Ga0066708_10797553	All Organisms → cellular organisms → Bacteria	593	Open in IMG/M
3300005610\|Ga0070763_10658203	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	611	Open in IMG/M
3300005764\|Ga0066903_100156516	All Organisms → cellular organisms → Bacteria → Proteobacteria	3290	Open in IMG/M
3300005764\|Ga0066903_100512234	All Organisms → cellular organisms → Bacteria	2039	Open in IMG/M
3300005764\|Ga0066903_102321658	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300005764\|Ga0066903_102428730	Not Available	1014	Open in IMG/M
3300005764\|Ga0066903_103317247	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	870	Open in IMG/M
3300005764\|Ga0066903_103658376	Not Available	827	Open in IMG/M
3300005764\|Ga0066903_107837430	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Alteromonadales → Pseudoalteromonadaceae → Pseudoalteromonas → Pseudoalteromonas rubra	549	Open in IMG/M
3300005764\|Ga0066903_108635908	All Organisms → cellular organisms → Bacteria → Proteobacteria	518	Open in IMG/M
3300006046\|Ga0066652_101922531	Not Available	530	Open in IMG/M
3300006176\|Ga0070765_100160298	All Organisms → cellular organisms → Bacteria	2015	Open in IMG/M
3300006854\|Ga0075425_102097196	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	631	Open in IMG/M
3300006903\|Ga0075426_11036515	All Organisms → cellular organisms → Bacteria	620	Open in IMG/M
3300010048\|Ga0126373_10556260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1195	Open in IMG/M
3300010048\|Ga0126373_11819949	Not Available	672	Open in IMG/M
3300010048\|Ga0126373_11852048	Not Available	667	Open in IMG/M
3300010360\|Ga0126372_12111660	Not Available	611	Open in IMG/M
3300010361\|Ga0126378_11883615	Not Available	681	Open in IMG/M
3300010361\|Ga0126378_12193999	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Dehalococcoidia → unclassified Dehalococcoidia → Dehalococcoidia bacterium	630	Open in IMG/M
3300010361\|Ga0126378_12728657	All Organisms → cellular organisms → Bacteria	564	Open in IMG/M
3300010376\|Ga0126381_104206606	Not Available	558	Open in IMG/M
3300010398\|Ga0126383_10315265	All Organisms → cellular organisms → Bacteria	1569	Open in IMG/M
3300010398\|Ga0126383_10706213	Not Available	1087	Open in IMG/M
3300010398\|Ga0126383_10827857	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1010	Open in IMG/M
3300010398\|Ga0126383_13354206	Not Available	523	Open in IMG/M
3300012056\|Ga0153925_1033647	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	501	Open in IMG/M
3300012212\|Ga0150985_109569623	Not Available	612	Open in IMG/M
3300012212\|Ga0150985_115755089	Not Available	614	Open in IMG/M
3300012285\|Ga0137370_10550388	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	710	Open in IMG/M
3300012469\|Ga0150984_118384552	All Organisms → cellular organisms → Bacteria → Proteobacteria	826	Open in IMG/M
3300012924\|Ga0137413_11175847	All Organisms → cellular organisms → Bacteria → Proteobacteria	610	Open in IMG/M
3300012971\|Ga0126369_10547581	All Organisms → cellular organisms → Bacteria	1221	Open in IMG/M
3300012971\|Ga0126369_12028073	All Organisms → cellular organisms → Bacteria → Proteobacteria	663	Open in IMG/M
3300016387\|Ga0182040_11740245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	533	Open in IMG/M
3300016404\|Ga0182037_10143488	Not Available	1789	Open in IMG/M
3300016445\|Ga0182038_10561611	Not Available	981	Open in IMG/M
3300016445\|Ga0182038_11409126	Not Available	624	Open in IMG/M
3300018433\|Ga0066667_11959223	Not Available	537	Open in IMG/M
3300018433\|Ga0066667_12146286	Not Available	518	Open in IMG/M
3300018468\|Ga0066662_11866719	Not Available	629	Open in IMG/M
3300018482\|Ga0066669_11908185	Not Available	553	Open in IMG/M
3300020579\|Ga0210407_10090784	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2311	Open in IMG/M
3300020579\|Ga0210407_10159177	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1743	Open in IMG/M
3300020580\|Ga0210403_10006646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	9674	Open in IMG/M
3300020580\|Ga0210403_10008683	All Organisms → cellular organisms → Bacteria	8351	Open in IMG/M
3300020580\|Ga0210403_10088317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2506	Open in IMG/M
3300020580\|Ga0210403_10406381	Not Available	1111	Open in IMG/M
3300020583\|Ga0210401_10480969	All Organisms → cellular organisms → Bacteria	1104	Open in IMG/M
3300020583\|Ga0210401_10765791	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	825	Open in IMG/M
3300021170\|Ga0210400_10211425	All Organisms → cellular organisms → Eukaryota → Sar → Rhizaria → Retaria → Foraminifera → Monothalamids → Reticulomyxidae → Reticulomyxa → Reticulomyxa filosa	1579	Open in IMG/M
3300021178\|Ga0210408_10504447	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	962	Open in IMG/M
3300021374\|Ga0213881_10184586	Not Available	919	Open in IMG/M
3300021403\|Ga0210397_10432957	All Organisms → cellular organisms → Bacteria → Proteobacteria	988	Open in IMG/M
3300021406\|Ga0210386_10224048	All Organisms → cellular organisms → Bacteria	1599	Open in IMG/M
3300021474\|Ga0210390_10766106	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	801	Open in IMG/M
3300021479\|Ga0210410_10420673	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1196	Open in IMG/M
3300021560\|Ga0126371_10063260	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3575	Open in IMG/M
3300021560\|Ga0126371_10068404	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3446	Open in IMG/M
3300021560\|Ga0126371_10130957	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2547	Open in IMG/M
3300021560\|Ga0126371_11198072	All Organisms → cellular organisms → Bacteria	896	Open in IMG/M
3300021560\|Ga0126371_13013266	Not Available	570	Open in IMG/M
3300022507\|Ga0222729_1039703	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	623	Open in IMG/M
3300022508\|Ga0222728_1084583	Not Available	581	Open in IMG/M
3300022533\|Ga0242662_10233225	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	591	Open in IMG/M
3300025915\|Ga0207693_10978396	Not Available	647	Open in IMG/M
3300027874\|Ga0209465_10101340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1412	Open in IMG/M
3300028906\|Ga0308309_10139938	All Organisms → cellular organisms → Bacteria → unclassified Bacteria → bacterium	1934	Open in IMG/M
3300031543\|Ga0318516_10069432	Not Available	1951	Open in IMG/M
3300031543\|Ga0318516_10201433	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1149	Open in IMG/M
3300031544\|Ga0318534_10619943	Not Available	614	Open in IMG/M
3300031545\|Ga0318541_10009200	Not Available	4378	Open in IMG/M
3300031561\|Ga0318528_10631628	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	574	Open in IMG/M
3300031564\|Ga0318573_10618325	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	583	Open in IMG/M
3300031573\|Ga0310915_10247215	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1255	Open in IMG/M
3300031681\|Ga0318572_10195782	Not Available	1179	Open in IMG/M
3300031713\|Ga0318496_10033897	Not Available	2592	Open in IMG/M
3300031724\|Ga0318500_10424953	Not Available	663	Open in IMG/M
3300031751\|Ga0318494_10898085	Not Available	520	Open in IMG/M
3300031753\|Ga0307477_10686044	All Organisms → cellular organisms → Bacteria	686	Open in IMG/M
3300031765\|Ga0318554_10141279	Not Available	1365	Open in IMG/M
3300031795\|Ga0318557_10065540	Not Available	1559	Open in IMG/M
3300031797\|Ga0318550_10198122	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	971	Open in IMG/M
3300031805\|Ga0318497_10370171	Not Available	801	Open in IMG/M
3300031880\|Ga0318544_10020017	All Organisms → cellular organisms → Bacteria	2237	Open in IMG/M
3300031890\|Ga0306925_11948331	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	557	Open in IMG/M
3300031910\|Ga0306923_10822340	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1024	Open in IMG/M
3300031945\|Ga0310913_10819086	Not Available	656	Open in IMG/M
3300032025\|Ga0318507_10019471	Not Available	2393	Open in IMG/M
3300032039\|Ga0318559_10554846	Not Available	536	Open in IMG/M
3300032042\|Ga0318545_10116286	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	942	Open in IMG/M
3300032059\|Ga0318533_10893136	Not Available	652	Open in IMG/M
3300032065\|Ga0318513_10136479	Not Available	1165	Open in IMG/M
3300032091\|Ga0318577_10498715	Not Available	580	Open in IMG/M
3300032205\|Ga0307472_100853355	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	838	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.96%
Host-Associated	Host-Associated	5.04%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.96%
Plants	Host-Associated → Plants	4.20%
Fungi	Host-Associated → Fungi	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.12%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.52%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.68%
Rock-Dwelling (Subaerial Biofilms)	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms)	0.84%
Mycelium	Host-Associated → Fungi → Mycelium	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	70.59%
Loam	Environmental → Terrestrial → Soil → Loam	23.53%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.68%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified	0.84%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.84%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	41.18%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.49%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	13.45%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	10.92%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	10.08%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.68%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.68%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified	0.84%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.84%
Unclassified	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	34.45%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	15.97%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.92%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	8.40%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	7.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.04%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	3.36%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	2.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.68%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.68%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.68%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	1.68%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.84%
Exposed Rock	Environmental → Terrestrial → Rock-Dwelling (Subaerial Biofilms) → Unclassified → Unclassified → Exposed Rock	0.84%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.84%
Attine Ant Fungus Gardens	Host-Associated → Fungi → Mycelium → Unclassified → Unclassified → Attine Ant Fungus Gardens	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005177	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005184	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005546	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005574	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_143	Environmental	Open in IMG/M
3300005575	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151	Environmental	Open in IMG/M
3300005576	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_157	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006903	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5	Host-Associated	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012056	Attine ant fungus gardens microbial communities from New Jersey, USA - TSNJ009 MetaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012285	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_20_16 metaG	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018433	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_116	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300018482	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_118	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021178	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-M	Environmental	Open in IMG/M
3300021374	Barbacenia macrantha exposed rock microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - ER_R08	Environmental	Open in IMG/M
3300021403	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022507	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-27-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022508	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-19-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028906	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 (v2)	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031544	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031713	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22	Environmental	Open in IMG/M
3300031724	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031751	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f24	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031765	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22	Environmental	Open in IMG/M
3300031795	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f19	Environmental	Open in IMG/M
3300031797	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f23	Environmental	Open in IMG/M
3300031805	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f23	Environmental	Open in IMG/M
3300031880	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032091	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066395_107496051	3300004633	Tropical Forest Soil	MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIGRINP*
Ga0066690_107792812	3300005177	Soil	MAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDI
Ga0066688_108046672	3300005178	Soil	MAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGACSGRT*
Ga0066671_104178042	3300005184	Soil	MAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0066388_1028964302	3300005332	Tropical Forest Soil	MRNLALITLWLAMLLAGCGGSLREDASAGPNPGGGFYGAPNIKIGRINP*
Ga0066388_1042569272	3300005332	Tropical Forest Soil	MAKLGLAMFLLAVLLAACGGSLRGNASAGPNPGGGFYGAPNIDVGRINP*
Ga0066388_1078588991	3300005332	Tropical Forest Soil	MHKIGAVTMLLALLLAGCGGALRGDASSGPNPGGGFYGAPNINIGRINP*
Ga0070709_108484731	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	LMTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP*
Ga0070714_1002667262	3300005435	Agricultural Soil	MNKLALAVICFAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070714_1008582762	3300005435	Agricultural Soil	KVALVMIWLAVLLAACGASLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070713_1006594751	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MNKLALAVICFAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDIG
Ga0070713_1008622991	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	SLAVRGGPMNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070713_1024206271	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	RVGSRTAGELMTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP*
Ga0070711_1001581403	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP*
Ga0070706_1006578802	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	MVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070698_1000545934	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070697_1004165001	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	RISLAVRGGPMNMVATATICLALLLAGSGGPLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070696_1008101791	3300005546	Corn, Switchgrass And Miscanthus Rhizosphere	VSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0066670_107481941	3300005560	Soil	MNKIGLAVLWLAMLLVGCGGSLRGEAKAGPNPGGGFYGGPNINVGRINP*
Ga0066705_109366002	3300005569	Soil	MKKLGLAIIASMMLLAGCGGSFKGDANAAPNPGGGFYGAPNSDIGRINP*
Ga0066694_100500102	3300005574	Soil	MNKVALVMIWLAVLLVGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0066702_104772982	3300005575	Soil	MKKLGLAIIASMMLLAGCGGSFKGDANAAPNPGGGFYGAPNSDIGRINLNPAVG*
Ga0066708_107975532	3300005576	Soil	MAKLGLPMILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNI
Ga0070763_106582031	3300005610	Soil	MARLGPAMILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP*
Ga0066903_1001565162	3300005764	Tropical Forest Soil	MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0066903_1005122345	3300005764	Tropical Forest Soil	MHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0066903_1023216581	3300005764	Tropical Forest Soil	MRNLALITLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIG
Ga0066903_1024287303	3300005764	Tropical Forest Soil	MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP*
Ga0066903_1033172471	3300005764	Tropical Forest Soil	MAKLGLAMILLAILLAACGGSLRGNASAGPNPGGGFYGAPNIDIGRINPYNAGP*
Ga0066903_1036583762	3300005764	Tropical Forest Soil	MRKLTLPTLWFALLAGCSGSFRGDSSVGPNPGGGFYGAPNINVGHINP*
Ga0066903_1078374301	3300005764	Tropical Forest Soil	MSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINVGRINP*
Ga0066903_1086359081	3300005764	Tropical Forest Soil	MRRLVLATLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIKIG
Ga0066652_1019225312	3300006046	Soil	MNKFALATLWLALLLSGCGGSLHGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0070765_1001602982	3300006176	Soil	MARLGPATILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP*
Ga0075425_1020971962	3300006854	Populus Rhizosphere	LREAMVSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0075426_110365151	3300006903	Populus Rhizosphere	VSKFALATLWLVMMLAGCGGSFRGDASAGPNPGGGFYGAP
Ga0126373_105562603	3300010048	Tropical Forest Soil	MKKLALATLWLVLLAGCGGSFRGDADAGPNPGGGFYGAPNINVGRVNP*
Ga0126373_118199491	3300010048	Tropical Forest Soil	MEARMHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0126373_118520482	3300010048	Tropical Forest Soil	MEARMHKIGAVTMLLALLLAGCGGALRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0126372_121116601	3300010360	Tropical Forest Soil	MNKFRLAMLCFTALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0126378_118836151	3300010361	Tropical Forest Soil	MNKFRLAMLCFMALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINPQ*
Ga0126378_121939991	3300010361	Tropical Forest Soil	MSKLVLVLIGLAMLLAGCGGLVRGDASAGPNPGGGFYEAPNIDIGRIDP*
Ga0126378_127286572	3300010361	Tropical Forest Soil	LRLPVICSMMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0134128_119706532	3300010373	Terrestrial Soil	ALLLAGCGAMAGDSSLGPNPGGGFYGAPNLNVGRVNP*
Ga0126381_1042066061	3300010376	Tropical Forest Soil	MAKLGLAMILLAILLAACGGSLQGNASAGPNPGGGFYGAPNIDIGRINP*
Ga0126383_103152654	3300010398	Tropical Forest Soil	GLAMILLTILLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0126383_107062132	3300010398	Tropical Forest Soil	MSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0126383_108278572	3300010398	Tropical Forest Soil	MAKLKLPMILLAILLAGCGGSLRGNASAGPNPGGGFYGAPNIDIGRINP*
Ga0126383_133542061	3300010398	Tropical Forest Soil	MSRLVLVLIGLAMLLAGCGGSVRGDASAGPNPGGG
Ga0153925_10336472	3300012056	Attine Ant Fungus Gardens	MARLGPATILLAILLAGCGGSLRGDASAGPNPGGGFYDGPNLNVGRINP*
Ga0150985_1095696231	3300012212	Avena Fatua Rhizosphere	MNKVALVMIWLPVLLAGCGGSLRGTASAGPNPGGGFYGAPNIDIGRINP*
Ga0150985_1157550892	3300012212	Avena Fatua Rhizosphere	MLLAALVTLCLAMLLTRCGGSFHGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0137370_105503882	3300012285	Vadose Zone Soil	MNNLKSGLAVICLAMLLAGCGGSFRGNASAGPNPGGGFYGAPNIDIGRINP*
Ga0150984_1183845521	3300012469	Avena Fatua Rhizosphere	MTKLMLAMIGVAVLLAGCGGDASAGPNPGGGFYGAPNID
Ga0137413_111758472	3300012924	Vadose Zone Soil	MKKVALVMIWLAALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP*
Ga0126369_105475813	3300012971	Tropical Forest Soil	MEARMHKIGAVTMLLALLLAGCGGALRGDASSGPNPGGGFYGAPNINIGRINP*
Ga0126369_120280732	3300012971	Tropical Forest Soil	MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP*
Ga0182040_117402452	3300016387	Soil	MNKLALAVICLAILLAACGGSLKGDASAGPNPGGGFYGAPNIDN
Ga0182037_101434882	3300016404	Soil	GMWRSPGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0182038_105616112	3300016445	Soil	MSKLALVLVGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP
Ga0182038_114091261	3300016445	Soil	MAKLAFVSICVAMLLAGCGGPLRGDANAGPNPGGGFYGAPNINVGRINP
Ga0066667_119592231	3300018433	Grasslands Soil	MNKIGLAVLWLAMLLVGCAGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0066667_121462861	3300018433	Grasslands Soil	MNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0066662_118667191	3300018468	Grasslands Soil	MAKLGLPTILLAILLAGCGGSLPGDASAGPNPGGGFYGAPNIDIGRINP
Ga0066669_119081851	3300018482	Grasslands Soil	MNKIGLAVLWLPMLLVGCAGSLRGDASAGPNPGGGFYGAPNIDVGRINP
Ga0210407_100907842	3300020579	Soil	MTKLGLAIICSMMLLAGCSSSLKGDANAGPNPGGGFYGAPNIDIGRINP
Ga0210407_101591772	3300020579	Soil	MNKAGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP
Ga0210403_100066465	3300020580	Soil	MDKLGLATILLTILLAGCSGSLRGDANAGPNPGGGFYDGPNLNVGRINP
Ga0210403_100086834	3300020580	Soil	MDKLGLATILLTILLAGCGGSLRGDASAGPNPGGGFYDGPNLNVGRINP
Ga0210403_100883173	3300020580	Soil	MARLGPATILLAILLAGCGGSLRGDANAGPNPGGGFYDGPNLNVGRINP
Ga0210403_104063813	3300020580	Soil	MDKLGLATILLTILLAGCSGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0210401_104809692	3300020583	Soil	MTKLGLAIICSMMLLAGCSSSLKANAGPNPGGGFYGAPNIDIGRINP
Ga0210401_107657911	3300020583	Soil	NKAGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP
Ga0210400_102114252	3300021170	Soil	MICLAVLLAGCGGRLRGDTSAGPNSGGGFYGAPNIDIGRINP
Ga0210408_105044472	3300021178	Soil	MSRVALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0213881_101845862	3300021374	Exposed Rock	MSRLVLVLIGLAMLLAGCGGSVRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0210397_104329572	3300021403	Soil	KLGLAIICSMMLLAGCSGSLKGDANAGPNPGGGFYGAPNIDIGRINP
Ga0210386_102240481	3300021406	Soil	GEGGPMNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0210390_107661062	3300021474	Soil	MNKAGLAMICLAMLLAGCGGSLRRDASAGPNPGGGFYGAPNIRIGRINP
Ga0210410_104206732	3300021479	Soil	MNKAGLAMICLAMLLAGCGGSLRGDASAGPNPRGGFYGAPNLRIGRINP
Ga0126371_100632603	3300021560	Tropical Forest Soil	MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0126371_100684044	3300021560	Tropical Forest Soil	MHKIGAVTMLLALLLAGCGGTLRGDASAGPNPGGGFYGAPNINIGRINP
Ga0126371_101309573	3300021560	Tropical Forest Soil	MRKLTLPTLWFALLAGCSGSFRGDSSVGPNPGGGFYGAPNINVGHINP
Ga0126371_111980722	3300021560	Tropical Forest Soil	MKDLRLSLTMMCLALLLAGCGSVVGNASAGPNPGGGFYGAPNIDIGRINP
Ga0126371_130132661	3300021560	Tropical Forest Soil	MSKLAPAVICLAILLTGCGGPLRADANAGPNPGGGFY
Ga0222729_10397031	3300022507	Soil	MTKLGLAIICSMMLFAGCSSSLKGDANAGPNPGGGFYGAPNIDT
Ga0222728_10845831	3300022508	Soil	MSKFALVLVGLAMLLAGCGGPLTGDADAGPNPGGGFYGAPNLNVGRINP
Ga0242662_102332251	3300022533	Soil	AGLAMICLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIRIGRINP
Ga0207693_109783962	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	LAIIFLAALLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0209465_101013403	3300027874	Tropical Forest Soil	MRNLALTTLWLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINVGHINP
Ga0308309_101399382	3300028906	Soil	MARLGPATILLAILLAGCGGPLRGDANAGPNPGGGFYDGPNLNVGRINP
Ga0318516_100694322	3300031543	Soil	MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGEFYGAPNIDNGRVNP
Ga0318516_102014331	3300031543	Soil	MNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Ga0318534_106199432	3300031544	Soil	MSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINIGRINP
Ga0318541_100092004	3300031545	Soil	MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0318528_106316282	3300031561	Soil	VSKFALVLVGLAMLLAGCGGPLTGDADAGPNPGGGFYGAPNLNVGRINP
Ga0318573_106183251	3300031564	Soil	PMNKLVLAVICLAILLAGWGGSLKGDASAGPNPGGGFYGAPNIDNGRINP
Ga0310915_102472151	3300031573	Soil	VREGPMNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Ga0318572_101957821	3300031681	Soil	MWRSAGGTCVTPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0318496_100338971	3300031713	Soil	CVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVN
Ga0318500_104249533	3300031724	Soil	MHRVALIIIGLAVLLAGCGGSLRGNASAGPNPGGGFYS
Ga0318502_101566281	3300031747	Soil	AILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Ga0318494_108980852	3300031751	Soil	VRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0307477_106860441	3300031753	Hardwood Forest Soil	MDKLGLATILLTILLAGCSGSLRGDANAGPNPGGGFYDGPNLDV
Ga0318554_101412791	3300031765	Soil	MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGVFGAPNIDTGRVYP
Ga0318557_100655401	3300031795	Soil	ALALVVNEGPMNKLAPAVICIAILLTGCGSPLRPDANAGPNPGGGFYGAPNMNFGRINP
Ga0318550_101981221	3300031797	Soil	MNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRIN
Ga0318497_103701711	3300031805	Soil	LVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVNP
Ga0318544_100200173	3300031880	Soil	MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNINIGRINP
Ga0306925_119483311	3300031890	Soil	MAKLAFVSICVAMLLAGCGGPLRGDANAGPNPGGGFYGAPNINVG
Ga0306923_108223401	3300031910	Soil	MNKVALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNIDIGRINP
Ga0310913_108190862	3300031945	Soil	MNKVALVMIWLAVLLAGCGGSLRGDASAGPNPGGGFYGAPN
Ga0318507_100194714	3300032025	Soil	MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFY
Ga0318559_105548462	3300032039	Soil	MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLRGDASAGPNPGGGFYGAPNIDNGRINP
Ga0318545_101162861	3300032042	Soil	MNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRV
Ga0318533_108931361	3300032059	Soil	MNKVALVLIGLAMLLVGCGGSLRGDARAGPNPGGGFYGAPNIDIGRINP
Ga0318513_101364791	3300032065	Soil	MWRSAGGTCVSPALVVRERPMNKLALAVICLAILLAGCGGSLKGDASAGPNPGGGFYGAPNIDNGRVN
Ga0318577_104987151	3300032091	Soil	MSKLALVLIGLAMLLAGCGGSLRGDASAGPNPGGGFYGAPNINI
Ga0307472_1008533553	3300032205	Hardwood Forest Soil	MSKLGLAMICLAMLLAGCAGSLRGDASAGPNPGGGFYGAPN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075141

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences