Metagenome / Metatranscriptome Family F075152

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075152
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	79 residues
Representative Sequence	MLRGHQIRITNDRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQEQTLL
Number of Associated Samples	83
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	25.42 %
% of genes near scaffold ends (potentially truncated)	21.01 %
% of genes from short scaffolds (< 2000 bps)	83.19 %
Associated GOLD sequencing projects	72
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.62

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (53.782 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil (57.143 % of family members)
Environment Ontology (ENVO)	Unclassified (48.739 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (63.025 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 44.86% β-sheet: 0.00% Coil/Unstructured: 55.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.62
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.62
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF12680	SnoaL_2	3.36
PF06537	DHOR	3.36
PF00072	Response_reg	1.68
PF12697	Abhydrolase_6	1.68
PF04055	Radical_SAM	0.84
PF07681	DoxX	0.84
PF01966	HD	0.84
PF13620	CarboxypepD_reg	0.84
PF02698	DUF218	0.84
PF07238	PilZ	0.84
PF00313	CSD	0.84
PF04456	DUF503	0.84
PF01712	dNK	0.84
PF04551	GcpE	0.84
PF12704	MacB_PCD	0.84
PF11867	DUF3387	0.84
PF00920	ILVD_EDD	0.84
PF12867	DinB_2	0.84
PF13407	Peripla_BP_4	0.84
PF00561	Abhydrolase_1	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	3.36
COG0129	Dihydroxyacid dehydratase/phosphogluconate dehydratase	Carbohydrate transport and metabolism [G]	1.68
COG0821	4-hydroxy-3-methylbut-2-enyl diphosphate synthase IspG/GcpE	Lipid transport and metabolism [I]	0.84
COG1428	Deoxyadenosine/deoxycytidine kinase	Nucleotide transport and metabolism [F]	0.84
COG1434	Lipid carrier protein ElyC involved in cell wall biogenesis, DUF218 family	Cell wall/membrane/envelope biogenesis [M]	0.84
COG1550	Stress-induced protein YlxP, DUF503 family	Function unknown [S]	0.84
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.84
COG2949	Uncharacterized periplasmic protein SanA, affects membrane permeability for vancomycin	Cell wall/membrane/envelope biogenesis [M]	0.84
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
All Organisms	root	All Organisms	46.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
cellular organisms	root	All Organisms → cellular organisms	46.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	46.22 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	28.57 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.68 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	4.20 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3.36 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.68 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.20 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	3.36 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.84 %
unclassified Verrucomicrobia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.20 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.36 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	0.84 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.20 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.36 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	0.84 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	53.78 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4.20 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3.36 %
Herbiconiux	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Herbiconiux	0.84 %
Verrucomicrobia bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001545\|JGI12630J15595_10033185	Not Available	1061	Open in IMG/M
3300002245\|JGIcombinedJ26739_100597361	Not Available	981	Open in IMG/M
3300004119\|Ga0058887_1053646	Not Available	580	Open in IMG/M
3300004479\|Ga0062595_101569604	Not Available	611	Open in IMG/M
3300005435\|Ga0070714_101701047	Not Available	616	Open in IMG/M
3300005435\|Ga0070714_102426055	Not Available	509	Open in IMG/M
3300005467\|Ga0070706_101323981	Not Available	660	Open in IMG/M
3300005526\|Ga0073909_10097709	Not Available	1156	Open in IMG/M
3300005542\|Ga0070732_10138986	All Organisms → cellular organisms → Bacteria	1444	Open in IMG/M
3300006028\|Ga0070717_12086332	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300006057\|Ga0075026_100514061	Not Available	691	Open in IMG/M
3300006175\|Ga0070712_101786217	Not Available	538	Open in IMG/M
3300006755\|Ga0079222_10052445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1904	Open in IMG/M
3300006893\|Ga0073928_10003961	All Organisms → cellular organisms → Bacteria	22544	Open in IMG/M
3300007258\|Ga0099793_10223929	Not Available	905	Open in IMG/M
3300007258\|Ga0099793_10268809	All Organisms → cellular organisms → Bacteria → Acidobacteria	825	Open in IMG/M
3300007258\|Ga0099793_10360330	Not Available	711	Open in IMG/M
3300007265\|Ga0099794_10001873	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7540	Open in IMG/M
3300007265\|Ga0099794_10421820	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M
3300007788\|Ga0099795_10088862	All Organisms → cellular organisms → Bacteria → Acidobacteria	1195	Open in IMG/M
3300007788\|Ga0099795_10202362	Not Available	838	Open in IMG/M
3300009038\|Ga0099829_10046116	All Organisms → cellular organisms → Bacteria → Acidobacteria	3204	Open in IMG/M
3300009088\|Ga0099830_10348381	Not Available	1190	Open in IMG/M
3300009089\|Ga0099828_10146503	All Organisms → cellular organisms → Bacteria	2083	Open in IMG/M
3300009143\|Ga0099792_10972058	Not Available	566	Open in IMG/M
3300009143\|Ga0099792_11151541	Not Available	524	Open in IMG/M
3300010159\|Ga0099796_10279157	Not Available	702	Open in IMG/M
3300010159\|Ga0099796_10414782	Not Available	593	Open in IMG/M
3300010159\|Ga0099796_10507157	All Organisms → cellular organisms → Bacteria → Acidobacteria	540	Open in IMG/M
3300011120\|Ga0150983_10602645	Not Available	620	Open in IMG/M
3300011269\|Ga0137392_11205034	Not Available	615	Open in IMG/M
3300011269\|Ga0137392_11473919	All Organisms → cellular organisms → Bacteria → Acidobacteria	539	Open in IMG/M
3300011270\|Ga0137391_11173520	All Organisms → cellular organisms → Bacteria → Acidobacteria	616	Open in IMG/M
3300011271\|Ga0137393_10028206	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	4215	Open in IMG/M
3300011271\|Ga0137393_11769246	All Organisms → cellular organisms → Bacteria → Acidobacteria	506	Open in IMG/M
3300012096\|Ga0137389_10062387	All Organisms → cellular organisms → Bacteria → Acidobacteria	2856	Open in IMG/M
3300012096\|Ga0137389_10195473	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1682	Open in IMG/M
3300012096\|Ga0137389_10853780	All Organisms → cellular organisms → Bacteria → Acidobacteria	781	Open in IMG/M
3300012202\|Ga0137363_10183245	All Organisms → cellular organisms → Bacteria	1669	Open in IMG/M
3300012202\|Ga0137363_10260330	All Organisms → cellular organisms → Bacteria	1413	Open in IMG/M
3300012202\|Ga0137363_10398326	Not Available	1146	Open in IMG/M
3300012203\|Ga0137399_10249681	All Organisms → cellular organisms → Bacteria	1455	Open in IMG/M
3300012203\|Ga0137399_10333066	Not Available	1259	Open in IMG/M
3300012203\|Ga0137399_11303621	Not Available	610	Open in IMG/M
3300012205\|Ga0137362_10058660	All Organisms → cellular organisms → Bacteria → Acidobacteria	3160	Open in IMG/M
3300012208\|Ga0137376_10513590	Not Available	1039	Open in IMG/M
3300012361\|Ga0137360_10436753	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1108	Open in IMG/M
3300012361\|Ga0137360_10865018	Not Available	779	Open in IMG/M
3300012582\|Ga0137358_10073650	All Organisms → cellular organisms → Bacteria	2295	Open in IMG/M
3300012582\|Ga0137358_10471916	All Organisms → cellular organisms → Bacteria → Acidobacteria	846	Open in IMG/M
3300012683\|Ga0137398_10475309	Not Available	857	Open in IMG/M
3300012683\|Ga0137398_10689555	All Organisms → cellular organisms → Bacteria → Acidobacteria	709	Open in IMG/M
3300012683\|Ga0137398_10727152	Not Available	691	Open in IMG/M
3300012685\|Ga0137397_10359169	Not Available	1085	Open in IMG/M
3300012685\|Ga0137397_10451881	Not Available	957	Open in IMG/M
3300012685\|Ga0137397_10542805	All Organisms → cellular organisms → Bacteria → Acidobacteria	866	Open in IMG/M
3300012917\|Ga0137395_10159258	All Organisms → cellular organisms → Bacteria → Acidobacteria	1551	Open in IMG/M
3300012922\|Ga0137394_10480536	Not Available	1056	Open in IMG/M
3300012923\|Ga0137359_10036506	All Organisms → cellular organisms → Bacteria	4240	Open in IMG/M
3300012923\|Ga0137359_10135166	All Organisms → cellular organisms → Bacteria → Acidobacteria	2195	Open in IMG/M
3300012923\|Ga0137359_10334466	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1347	Open in IMG/M
3300012924\|Ga0137413_11055595	All Organisms → cellular organisms → Bacteria → Acidobacteria	640	Open in IMG/M
3300012924\|Ga0137413_11212669	All Organisms → cellular organisms → Bacteria → Acidobacteria	602	Open in IMG/M
3300012925\|Ga0137419_10547164	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	924	Open in IMG/M
3300012927\|Ga0137416_10461041	Not Available	1088	Open in IMG/M
3300012927\|Ga0137416_11723949	Not Available	572	Open in IMG/M
3300012929\|Ga0137404_10724915	All Organisms → cellular organisms → Bacteria → Acidobacteria	900	Open in IMG/M
3300012944\|Ga0137410_11504064	All Organisms → cellular organisms → Bacteria	587	Open in IMG/M
3300015241\|Ga0137418_10743891	Not Available	744	Open in IMG/M
3300015242\|Ga0137412_10268121	All Organisms → cellular organisms → Bacteria → Acidobacteria	1346	Open in IMG/M
3300015245\|Ga0137409_10374707	All Organisms → cellular organisms → Bacteria → Acidobacteria	1236	Open in IMG/M
3300017936\|Ga0187821_10257453	Not Available	683	Open in IMG/M
3300020199\|Ga0179592_10420486	Not Available	581	Open in IMG/M
3300020579\|Ga0210407_10307021	Not Available	1239	Open in IMG/M
3300020581\|Ga0210399_10574190	Not Available	934	Open in IMG/M
3300020581\|Ga0210399_11224641	Not Available	595	Open in IMG/M
3300020583\|Ga0210401_10544603	Not Available	1023	Open in IMG/M
3300021046\|Ga0215015_10239979	Not Available	1177	Open in IMG/M
3300021086\|Ga0179596_10163197	All Organisms → cellular organisms → Bacteria → Acidobacteria	1067	Open in IMG/M
3300021088\|Ga0210404_10150342	All Organisms → cellular organisms → Bacteria	1220	Open in IMG/M
3300021170\|Ga0210400_10047298	All Organisms → cellular organisms → Bacteria	3347	Open in IMG/M
3300021170\|Ga0210400_10556340	Not Available	946	Open in IMG/M
3300021170\|Ga0210400_10736070	Not Available	810	Open in IMG/M
3300022557\|Ga0212123_10019938	All Organisms → cellular organisms → Bacteria	7737	Open in IMG/M
3300022724\|Ga0242665_10313471	Not Available	552	Open in IMG/M
3300024288\|Ga0179589_10085501	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1264	Open in IMG/M
3300024288\|Ga0179589_10498812	Not Available	564	Open in IMG/M
3300025922\|Ga0207646_11883927	Not Available	510	Open in IMG/M
3300025928\|Ga0207700_11507039	Not Available	597	Open in IMG/M
3300026285\|Ga0209438_1118413	Not Available	750	Open in IMG/M
3300026304\|Ga0209240_1134113	All Organisms → cellular organisms → Bacteria → Acidobacteria	816	Open in IMG/M
3300026341\|Ga0257151_1010173	Not Available	978	Open in IMG/M
3300026555\|Ga0179593_1111455	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Herbiconiux	2854	Open in IMG/M
3300026557\|Ga0179587_10335136	Not Available	979	Open in IMG/M
3300026557\|Ga0179587_10389623	Not Available	907	Open in IMG/M
3300027727\|Ga0209328_10173665	Not Available	653	Open in IMG/M
3300027842\|Ga0209580_10469498	All Organisms → cellular organisms → Bacteria	627	Open in IMG/M
3300027846\|Ga0209180_10339994	Not Available	857	Open in IMG/M
3300027862\|Ga0209701_10619157	Not Available	571	Open in IMG/M
3300027903\|Ga0209488_10324017	Not Available	1148	Open in IMG/M
3300028047\|Ga0209526_10104215	Not Available	1995	Open in IMG/M
3300028047\|Ga0209526_10111990	All Organisms → cellular organisms → Bacteria	1919	Open in IMG/M
3300028536\|Ga0137415_10699989	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → unclassified Verrucomicrobia → Verrucomicrobia bacterium	826	Open in IMG/M
3300029636\|Ga0222749_10057503	All Organisms → cellular organisms → Bacteria → Acidobacteria	1735	Open in IMG/M
3300030991\|Ga0073994_11756829	Not Available	641	Open in IMG/M
3300031057\|Ga0170834_103695863	Not Available	515	Open in IMG/M
3300031231\|Ga0170824_117343694	Not Available	535	Open in IMG/M
3300031715\|Ga0307476_10032342	All Organisms → cellular organisms → Bacteria	3484	Open in IMG/M
3300031715\|Ga0307476_11282550	Not Available	535	Open in IMG/M
3300031718\|Ga0307474_11489477	Not Available	533	Open in IMG/M
3300031720\|Ga0307469_10089306	All Organisms → cellular organisms → Bacteria	2121	Open in IMG/M
3300031753\|Ga0307477_10015812	All Organisms → cellular organisms → Bacteria	5146	Open in IMG/M
3300031753\|Ga0307477_10050956	Not Available	2847	Open in IMG/M
3300031754\|Ga0307475_10000294	All Organisms → cellular organisms → Bacteria → Acidobacteria	30273	Open in IMG/M
3300031754\|Ga0307475_10131661	All Organisms → cellular organisms → Bacteria	1976	Open in IMG/M
3300031754\|Ga0307475_11406105	Not Available	538	Open in IMG/M
3300032174\|Ga0307470_10301350	Not Available	1087	Open in IMG/M
3300032180\|Ga0307471_100082166	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2840	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.64%
Aquatic	Environmental → Aquatic	3.36%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.64%
Thermal Springs	Environmental → Aquatic → Thermal Springs	1.68%
Freshwater	Environmental → Aquatic → Freshwater	0.84%
Sediment	Environmental → Aquatic → Sediment	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	84.87%
Loam	Environmental → Terrestrial → Soil → Loam	11.76%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	1.68%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	60.50%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	21.01%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	5.88%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.88%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	1.68%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.68%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.68%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.84%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.84%

Habitat	Taxonomy	Distribution
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	57.14%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	10.08%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	9.24%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	5.88%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	4.20%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	2.52%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	1.68%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.68%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	1.68%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.84%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.84%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.84%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001545	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004119	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF210 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005526	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300006028	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG	Environmental	Open in IMG/M
3300006057	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2012	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300007255	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_1	Environmental	Open in IMG/M
3300007258	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300010159	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3	Environmental	Open in IMG/M
3300011120	Combined assembly of Microbial Forest Soil metaT	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012683	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012917	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk2.16 metaG	Environmental	Open in IMG/M
3300012922	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012924	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015242	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300015245	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300017936	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_1	Environmental	Open in IMG/M
3300020199	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021046	Soil microbial communities from Shale Hills CZO, Pennsylvania, United States - 90cm depth	Environmental	Open in IMG/M
3300021086	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300022557	Paint Pots_combined assembly	Environmental	Open in IMG/M
3300022724	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-17-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300024288	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_08_16fungal	Environmental	Open in IMG/M
3300025922	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300025928	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026285	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_20cm (SPAdes)	Environmental	Open in IMG/M
3300026304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)	Environmental	Open in IMG/M
3300026341	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-A	Environmental	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300027727	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027842	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027862	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300028536	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300029636	Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300030991	Metatranscriptome of forest soil microbial communities from Montana, USA - Site 5 -Soil GP-1A (Eukaryote Community Metatranscriptome)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12630J15595_100331851	3300001545	Forest Soil	MLWGQQIRITNASLPGIPTTGFLDRLASELKIGRHAAYRHAVQRVLETVRKNYEAGQYRSTTEAEHMLRKFVEQDQACV*
JGIcombinedJ26739_1005973613	3300002245	Forest Soil	MLWGQQIRITNARLPGIPTTGFLDRLASELKIGRHAAYRHAVQRVLETVRKNYEAGQYRSTTEAEHMLRKFVEQDQACV*
Ga0058887_10536462	3300004119	Forest Soil	QQIRIINDRLPAIPPTGFLDKLASELKIGRHADYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQDQNPL*
Ga0062595_1015696041	3300004479	Soil	MLWGQQARSTNIRVLGIPSTGFLDRLASELKIGRPAAYRHAVQHALETVKKNYEAGQYRSTTEAEYMLRKLADQEQARP*
Ga0070714_1017010472	3300005435	Agricultural Soil	GHMLWGQQTRITNDRLPAIPPTGFLDRLASELKIGRHAAYRHTVQRVLETVKKNYEAGQYRSTTEAELMFRKLVEQEQEPPLTAAL*
Ga0070714_1024260551	3300005435	Agricultural Soil	MLREQEIRSNDKRLPAIPASDFLDRLASELKIGRHAAYRHTVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQEQDLL*
Ga0070706_1013239812	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	CSPSRMLRGQQIRITNDRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQEQTLP*
Ga0073909_100977091	3300005526	Surface Soil	MTWGQVIRTKNARLPGIPATDFLDRLASELKIGRHAAYRHAVQRTLETVRKNYESGEYRSTTEAELMLRKLVEADADCK*
Ga0070732_101389862	3300005542	Surface Soil	MPQGQETRATNGRLSALPATGFLDHLASQLKIGRHAAYRHAVQRILDTVKKNYESGAYRSTTEAEHMLRKLVEQEEATSE*
Ga0070717_120863321	3300006028	Corn, Switchgrass And Miscanthus Rhizosphere	MLRGQQIRITKDRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLEIVRKNYESGQYRSTTEAEYMLRKL
Ga0075026_1005140612	3300006057	Watersheds	MSWGQEIRIRSARLPGIPATGFLDRLANELKIGRHAAYRHAVQRILETVKKNYESGEYHSTTEAELMLRKLVDKEEN*
Ga0070712_1017862172	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MLWGQQARSTNIRVLGIPSTGFLDRLASELKIGRSAAYRHAVQHALEIVKKNYESGQYRSTTEAEYMLRKLADQE
Ga0079222_100524451	3300006755	Agricultural Soil	MLRREETRVTNKPLPAIPPTDFLDRLASELKIGRHAAYRHAVQRILETVRKNYQAGQYRSTTEAEYMLRKLVEQEPNLL*
Ga0073928_1000396113	3300006893	Iron-Sulfur Acid Spring	MLWGQQIRITNGRLPAIPPTGFLERLASELKIGRHAAYRHAVQRVLETVKKNYEAGQYRSTTEAEHMFRKLVEQEQNLL*
Ga0099791_103401151	3300007255	Vadose Zone Soil	LPVIAPTGFLHRLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQASV*
Ga0099793_102239292	3300007258	Vadose Zone Soil	MLRGHEIRTTNARLPGILATDFLDRLASELKIGRHAAYRHAVQRTLEIVRKKYQCGEYRSTTEAELMLRKLVEADADCK*
Ga0099793_102688091	3300007258	Vadose Zone Soil	MLWGQQIRITSLRSPGILATGFLDRLASQLKIGRDAAYRHAVQRTLETVRKNYESGQYRSTTEAELALRTLAEKEENRK
Ga0099793_103603301	3300007258	Vadose Zone Soil	MLWGQQTRVTNDGLPAIHPTGFLDRLASELKIGRHAAYRHTVQRVLETVKKNYEAGQYRSTTEAELMFRRLVEQEQEPPLTAVL*
Ga0099794_100018735	3300007265	Vadose Zone Soil	MLRGHEIPITHDRLPGIPPTGFLDKLASELKIGRHSAYRHAVQRVLETVRKSYESGLYRSTTEAEYMLRKLVEQEQASV*
Ga0099794_104218201	3300007265	Vadose Zone Soil	MPWGQQIRIPSLRSPGILATGFLDRLASQLKIGRDAAYRHAVQRTLETVRKNYESGQYRSTTEAELALRTLAEKEENRK*
Ga0099795_100888621	3300007788	Vadose Zone Soil	MLRGHEIPITNSHLPVIASTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0099795_102023621	3300007788	Vadose Zone Soil	MLRGHEIPITNSRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLAIVKKNYESGQYRSTTEAEYMLRKLVEQEPTCV*
Ga0099829_100461161	3300009038	Vadose Zone Soil	MLWGQQTRITNDRLPVIPPTGFLDRLASELKIGRHAAYRHAVQRVLATVRKNYESGQYRSTTEAEYMLRKLVEQEQTSL*
Ga0099830_103483812	3300009088	Vadose Zone Soil	MLWGQQIRTTNDRLPAIPPTGFLDKLASELKIGRHAAYRHAVQRVFEIVRKNYESGQYRSTTEAEYMLRKLVEQEQTLL*
Ga0099828_101465032	3300009089	Vadose Zone Soil	MLWGQQTRITNDRLPVIPPTGFLDRLASELKIGRHAAYRHAVQRVFEIVRKNYESGQYRSTTEAEYMLRKIVEQEQTSL*
Ga0099792_109720581	3300009143	Vadose Zone Soil	MLRGHEIPMTNNRLPVIPPTGFLDRLARELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQQQTCV*
Ga0099792_111515411	3300009143	Vadose Zone Soil	MLRGHETPITNNRLPVIAPTGFLDRLASELKIGRHAAYRHAVQRVLAIVKKNYESGQYGSTTEAEYMLRKLVEQEQTCV*
Ga0099796_102791572	3300010159	Vadose Zone Soil	MLRGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLAEQEPTCV*
Ga0099796_104147822	3300010159	Vadose Zone Soil	MLRGHEIPITNSRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0099796_105071572	3300010159	Vadose Zone Soil	MLRGHEIPITNNRLPVIAPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0150983_106026451	3300011120	Forest Soil	GRNMLWGQQIRIINDRLPAIPPTGFLDKLASELKIGRHADYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQDQNPL*
Ga0137392_112050341	3300011269	Vadose Zone Soil	MLRGHEIPITHNRLPVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLVEQEQTCS*
Ga0137392_114739191	3300011269	Vadose Zone Soil	MLWGQQIRITSLRSPGILATGFLDRLASQLKIGRDAAYRHAVQRTLETVRKNYESGEYRSTTEAELALRTLAEK
Ga0137391_111735201	3300011270	Vadose Zone Soil	MLWGQQIRITSLRSPGILATGFLDRLASQLKIGRDATYRHAVQRTLETVRKNYESGEYRSTTEAELALRTLAEKEENRK*
Ga0137393_100282062	3300011271	Vadose Zone Soil	MLWGQQIRTTNDRLPAIPPTGFLAKLASELKIGRHAAYRHAVQRVFEIVRKNYESGQYRSTTEAEYMLRKLVEQEQTLL*
Ga0137393_117692462	3300011271	Vadose Zone Soil	MLRGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYML
Ga0137389_100623874	3300012096	Vadose Zone Soil	MLWGQQTRITNDRLPVIPPTGFLDRLASELKIGRHAAYRHAVQRVLATVRKNYESGQYRSTTEAEYMLRKIVEQEQTSL*
Ga0137389_101954733	3300012096	Vadose Zone Soil	MLWGQQIRITSLRSPGILATGFLDRLASQLKIGRDAAYRHAVQRTLETVRKNYESGQYRSTTEAELALRTLAEKEENRK*
Ga0137389_108537801	3300012096	Vadose Zone Soil	MLWGQQVRTTSLRSPDILATGFLDRLASQLKIGRDATYRHAVQRTLETVRKNYESGEYRSTTEAELALRTLAEKEENRK*
Ga0137363_101832453	3300012202	Vadose Zone Soil	MLWGQQTRVTNHGLPAIHPTGFLDRLASELKIGRHAAYRHTVQRVLETVKKNYEAGQYRSTTEAELMFRRLVEQEQEPPLTAAL*
Ga0137363_102603303	3300012202	Vadose Zone Soil	MPWGHEIRITSARLPGIPATGFLDKLASELKIGRHAAYRHAVQRALETVEKNYVSGEYHSTTEAELMLRKLVEADDNCK*
Ga0137363_103983261	3300012202	Vadose Zone Soil	MLRGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLVEQEQPCT*
Ga0137399_102496811	3300012203	Vadose Zone Soil	IRITNGRLPAIPPTGFLERLASELKIGRHAAYRHAVQRVLETVRRNYEAGQYRSTTEAELMFRRLVEQEQEPPLTAAL*
Ga0137399_103330661	3300012203	Vadose Zone Soil	MLRGHEIPITHDRLPGIPPTGFLDKLASELKIGRHAAYRHAVQRVLETVRKSYESGLYRSTTEAEYMLRKLVDQEQASV*
Ga0137399_113036211	3300012203	Vadose Zone Soil	MLWGQEIRLPSLRLPGNPATGFLERLASQLKIGRNAAYRHAVQRVLETVKKNYVSGEYRSTTEAELTLRKLVDEEENCK*
Ga0137362_100586602	3300012205	Vadose Zone Soil	MLWGQQTRVTNDGLPAIHPTGFLDRLASELKIGRHAAYRHTVQRVLETVKKNYEAGQYRSTTEAELMFRRLVEQEQEPPLTAAL*
Ga0137376_105135902	3300012208	Vadose Zone Soil	MLRGHEIPITNNRLPVIPPTGFLDRLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0137360_104367533	3300012361	Vadose Zone Soil	MLRGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLV
Ga0137360_108650181	3300012361	Vadose Zone Soil	MLRGHEIPITNNRLPVIAPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQDQTCA*
Ga0137358_100736503	3300012582	Vadose Zone Soil	MLRGHEIPITHDRLPGIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRK
Ga0137358_104719162	3300012582	Vadose Zone Soil	MLRGHEIPITNSRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEPTCV*
Ga0137398_104753092	3300012683	Vadose Zone Soil	MLRGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLVEQEQTCS*
Ga0137398_106895552	3300012683	Vadose Zone Soil	MLRGHEIPITNSRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLAIVKKNYESGQYRSTTEAEYMLRKLVEQE
Ga0137398_107271522	3300012683	Vadose Zone Soil	MLRGHEIPIAHSRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYASGQYHSTTEAEYMLRKLVEEEQELRIVRA*
Ga0137397_103591691	3300012685	Vadose Zone Soil	MLRGHEIRTTNARLPGILATDFLDRLASELKIGRHAAYRHAVQRTLETVRKKYESGEYRSTTEAELMLRKLVEADADCK*
Ga0137397_104518811	3300012685	Vadose Zone Soil	TNNRLRVIAPTCFLDKLASELKIGRHAVYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCASSAYSVWPAPGI*
Ga0137397_105428051	3300012685	Vadose Zone Soil	MLRGHEIPIAHSRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0137395_101592581	3300012917	Vadose Zone Soil	MLRGHEIPITNNRLPVIAPTGFLDRLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0137394_104805361	3300012922	Vadose Zone Soil	NIWRADCSPSCMLRGHEIPITNNRLPVIAPTGFLDRLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0137359_100365066	3300012923	Vadose Zone Soil	MLWGQQIRIPSLRSPGILATGFLDRLASQLKIGRDAAYRHAVQRTLETVRKNYESGQYRSTTEAELALRTLAEKEENRK*
Ga0137359_101351663	3300012923	Vadose Zone Soil	MLRGHEIRTTNARLPGILATDFLDRLASELKIGRHAAYRHAVQRTLEIVRKKYQCGEYRSTTEAELMLWKLVEADADCK*
Ga0137359_103344661	3300012923	Vadose Zone Soil	MLRGHEIPITHDRLPGIPPTGFLDKLASELKIGRHAAYRHSVQRVLETVRKSYESGLYRSTTEAEYMLRKLVDQELASV*
Ga0137413_110555951	3300012924	Vadose Zone Soil	MLRGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0137413_112126692	3300012924	Vadose Zone Soil	MLRGHEIPITNNRLPVIAPTGFLDRLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYILRKLVEQEQTCA*
Ga0137419_105471642	3300012925	Vadose Zone Soil	MVRGHEIPITHDRLPGIPPTGFLDKLASELKIGRHAAYRHSVQRVLETVRKSYESGLYRSTTEAEYMLRKLVDQEQASV*
Ga0137416_104610411	3300012927	Vadose Zone Soil	MLRGHEIPITHDRLPGIPPTGFLDKLASELKIGRHAAYRHSVQRVLETVRKSYESGLYRSTTEAEYMLRKLVDQEQASV*
Ga0137416_117239492	3300012927	Vadose Zone Soil	MLWGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLVEQEQPCT*
Ga0137404_107249151	3300012929	Vadose Zone Soil	MLRGHEIPITNNRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0137410_115040642	3300012944	Vadose Zone Soil	MLWGQQTRITQDRLPGIPPTGFLDRLASELKIGRHAAYRHTVQCVLETVKKNYEAGQYRSTTEAEHM
Ga0137418_107438912	3300015241	Vadose Zone Soil	MLRGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLVEEEQPCT*
Ga0137412_102681212	3300015242	Vadose Zone Soil	MLRGHEIPITNNRLPAIPPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0137409_103747072	3300015245	Vadose Zone Soil	MLRGHEIPITNNRLPVIAPTGFLDRLASELKIGRHSAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA*
Ga0187821_102574531	3300017936	Freshwater Sediment	MLRGQEIRANDKRLPAIPASDFLDRLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQEQDLL
Ga0179592_104204861	3300020199	Vadose Zone Soil	MLRGHEIPITHDRLPGIPPTGFLDKLASELKIGRHSAYRHAVQRVLETVRKSYESGLYRSTTEAEYMLRKLVEQ
Ga0210407_103070212	3300020579	Soil	MLWGQEIRLPSLRLPDNPATGFLDRLASQLKIGRNAAYRHAVQRILEAVKKNYVSGEYRSTTEAELTLRKLVDQEENCK
Ga0210399_105741903	3300020581	Soil	MLWGQQIRVPHDRLPGIPPTGFLERLASELKIGRHAAYRHAVQRVLETVRKNYEAGQYRSTTEAEHVFRKLVEQEQNLL
Ga0210399_112246411	3300020581	Soil	MLRGHQIRITNDRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQEQTLL
Ga0210401_105446031	3300020583	Soil	MLWGQQIRIINDRLPVIPPTGFLDKLASELKIGRHADYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQDQNPL
Ga0215015_102399791	3300021046	Soil	MLWGQQIRTTNDRLPAIPPTGFLDKLASELKIGRHAAYRHAVQRVFEIVRKNYESGQYRSTTEAEYMLRKLVEQEQSLL
Ga0179596_101631972	3300021086	Vadose Zone Soil	MLRGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLVEQEQPCT
Ga0210404_101503422	3300021088	Soil	MLRGQEIRTTNNRLPDIPATGFLERLASELKIGRHAAYRHAVQRALETIRKNYESGQYRSSTEAEYMLRKLVEQEQNLL
Ga0210400_100472983	3300021170	Soil	MLRGQEIRITNNRLPGIPATGFLDRLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSSTEAEYMLRKLVEQEQNLL
Ga0210400_105563402	3300021170	Soil	MLWGQQTRITNDRLPAIHPTGFLDRLASELKIGRHADYRHTVQRVLETVKKNYEAGQYRSTTEAEHIFRKLVEQEQEPPLTAAL
Ga0210400_107360702	3300021170	Soil	MLWGQQIRIINDRLPAIPPTGFLDKLASELKIGRHADYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQDQNPL
Ga0212123_100199388	3300022557	Iron-Sulfur Acid Spring	MLWGQQIRITNGRLPAIPPTGFLERLASELKIGRHAAYRHAVQRVLETVKKNYEAGQYRSTTEAEHMFRKLVEQEQNLL
Ga0242665_103134711	3300022724	Soil	QIRIINDRLPAIPPTGFLDKLASELKIGRHADYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQDQNPL
Ga0179589_100855013	3300024288	Vadose Zone Soil	MLRGHEIPITNNRLPVIAPTGFLDRLASELKIGRHSAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA
Ga0179589_104988121	3300024288	Vadose Zone Soil	MLWGHEIPITHNRLLVIPPTGFLDRLASELKIGRHAAYRHAVQRVLETVRKSYESGQYRSTTEAEYMLRKLVEQEQTCS
Ga0207646_118839271	3300025922	Corn, Switchgrass And Miscanthus Rhizosphere	MLRGQQIRITNDRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLETVRKNYESGLYRSTTEAEYMLRKLVEQEQTLP
Ga0207700_115070391	3300025928	Corn, Switchgrass And Miscanthus Rhizosphere	VPRGQQIRVTPITKGRLPVIPATGFLDKLASELKIGRHAAYRHAVHRALQIVRKNYEAGQYRSTTEAEHMLRKLVEQEATLLESPE
Ga0209438_11184131	3300026285	Grasslands Soil	MLWGQQTRVTNDGLPAIHPTGFLDRLASELKIGRHAAYRHTVQRVLETVKKNYEAGQYRSTTEAELMFRRLVEQEQEPPLTAAL
Ga0209240_11341132	3300026304	Grasslands Soil	MLRGHEIPITNSRLPVIAPTGFLDKLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQACA
Ga0257151_10101733	3300026341	Soil	MLRGHEIRTTNARLPGILATDFLDRLASELKIGRHAAYRHAVQRTLEIVRKKYQCGEYRSTTEAELMLRKLVEADADCK
Ga0179593_11114555	3300026555	Vadose Zone Soil	VRGLLSRPHALGQQTRVTNDGLPAIHPTGFLDRLASELKIGRHAAVRHTVQRVLETVKKNYEAGQYRSTTEAELMFRRLVEQEQEPPLTAAL
Ga0179587_103351363	3300026557	Vadose Zone Soil	MLWGQQTRVTNDGLPAIHPTGFLDRLASELKIGRHAAYRHTVQRVLETVKKNYEAGQYRSTTEAELMFRRLVEQEQEPPLTAVL
Ga0179587_103896232	3300026557	Vadose Zone Soil	MLRGHEIPITNNRLPVIAPTGFLDRLASELKIGRHAAYRHAVQRVLATVKKNYESGQYRSTTEAEYMLRKLVEQEQTCA
Ga0209328_101736651	3300027727	Forest Soil	SHMLWGQQIRITNDRLPGIPPTGFLDRLASELKIGRHAAYRHAVQRILETVRKNYEAGQYRSTTEAEHMLRKLVEQEQTCV
Ga0209580_104694982	3300027842	Surface Soil	QGQETRATNGRLSALPATGFLDHLASQLKIGRHAAYRHAVQRILDTVKKNYESGAYRSTTEAEHMLRKLVEQEEATSE
Ga0209180_103399942	3300027846	Vadose Zone Soil	MLWGQQTRITNDRLPVIPPTGFLDRLASELKIGRHAAYRHAVQRVLATVRKNYESGQYRSTTEAEYMLRKLVEQEQTSL
Ga0209701_106191571	3300027862	Vadose Zone Soil	MLWGQQIRTTNDRLPAIPPTGFLDKLASELKIGRHAAYRHAVQRVFEIVRKNYESGQYRSTTEAEYMLRKLVEQEQTLL
Ga0209488_103240172	3300027903	Vadose Zone Soil	MLRGHETPITNNRLPVIAPTGFLDRLASELKIGRHAAYRHAVQRVLAIVKKNYESGQYGSTTEAEYMLRKLVEQEQTCV
Ga0209526_101042151	3300028047	Forest Soil	MLWGQQIRITNASLPGIPTTGFLDRLASELKIGRHAAYRHAVQRVLETVRKNYEAGQYRSTTEAEHMLRKFVEQDQACV
Ga0209526_101119901	3300028047	Forest Soil	MAACRLPAIPPTGFLERLASELKIGRHAAYRHAVQRVLETVKKNYEAGQYRSTTEAEHMFRKLVEQEQNLL
Ga0137415_106999892	3300028536	Vadose Zone Soil	MLWGQEIRLPSLRLPGNPATGFLDRLASQLKIGRNAAYRHAVQRILETVKKNYVSGAYHSTTEAELMLRKL
Ga0222749_100575033	3300029636	Soil	MLRGQEIRITNNRLPGIPATGFLDRLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSSTEAEYMLRKLVEQDQN
Ga0073994_117568291	3300030991	Soil	MLRGHEIPITNNRLPVIPPTGFLDKLASELKIGRHAAYRHAVQRVLATVRNNYESGQYRSTTEAEYMLRKLVEQEQTSA
Ga0170834_1036958631	3300031057	Forest Soil	MLWGQQIRITNNRLPGIPHTGFLDKLASELKIGRHAAYRHAVQRVLETVKKNYESGQYRSTTEAEYMLRKLVEQEQTL
Ga0170824_1173436941	3300031231	Forest Soil	MLWGQPVRVANNRAPAIPSTGFLDKLASELKIGRPAAYRHAVQRALETVKKSYESGQYRSTTEAEYMLRKLADQEETLP
Ga0307476_100323421	3300031715	Hardwood Forest Soil	MLWGQQVRIANNPLLGIPPTGFLDKLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSTTEAQYMLRKLVEQEQNAL
Ga0307476_112825501	3300031715	Hardwood Forest Soil	MLRGQEIRITNHRLPAIPATGFLERLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQEQNLL
Ga0307474_114894771	3300031718	Hardwood Forest Soil	MLRGQEIRITNHRLPAIPATGFLERLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQDQNPL
Ga0307469_100893061	3300031720	Hardwood Forest Soil	MLWGQQIRIPSLRSPGILATGFLDRLASQLKIGRDAAYRHAVQRTLETVRKNYESGQYRSTTEAELALRTLAEKEENRK
Ga0307477_100158126	3300031753	Hardwood Forest Soil	MLWGQEIRLPSLRLPGNPATGFLDRLASQLKIGRNADYRHAVQRILETVKKNYVSGEYRSTTEAELTLRKLVDEEENCK
Ga0307477_100509562	3300031753	Hardwood Forest Soil	MLWGQKIRTTSPLGLPATGFLERLASELKIGRNAEYRHAVQRMLETVRENYESGQYRSTTEAELTLRKLVEREANEQACN
Ga0307475_100002946	3300031754	Hardwood Forest Soil	MLWGQEIRLPSLRLPGNPATGFLDRLASQLKIGRNAAYRHAVQRILETVKKNYVSGEYRSTTEAELTLRKLVDEEENCK
Ga0307475_101316612	3300031754	Hardwood Forest Soil	MLWGQQIRITNDHLPGIPPTGFLDKLASELKIGRHAAYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQEQTAL
Ga0307475_114061051	3300031754	Hardwood Forest Soil	INDRLPVIPPTGFLDKLASELKIGRHADYRHAVQRVLETVRKNYESGQYRSTTEAEYMLRKLVEQDQNPL
Ga0307470_103013502	3300032174	Hardwood Forest Soil	MTWGQVIRTKNARLPGIPATDFLDRLASELKIGRHAAYRHAVQRTLETVRKNYESGEYRSTTEAELMLRKLVEADADCK
Ga0307471_1000821662	3300032180	Hardwood Forest Soil	MLWGQEIRLPSLRLPGNPATGFLDRLASQLKIGRNAAYRHAVQRILETVKKSYVSGEYRSTTEAELTLRKLVDEEENCK

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075152

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences