Metagenome / Metatranscriptome Family F075272

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075272
Family Type	Metagenome / Metatranscriptome
Number of Sequences	119
Average Sequence Length	86 residues
Representative Sequence	DKTKTQTYCQIDDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Number of Associated Samples	70
Number of Associated Scaffolds	119

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.84 %
% of genes near scaffold ends (potentially truncated)	94.12 %
% of genes from short scaffolds (< 2000 bps)	94.96 %
Associated GOLD sequencing projects	63
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.59

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (76.471 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (36.975 % of family members)
Environment Ontology (ENVO)	Unclassified (56.303 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.345 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.55% β-sheet: 0.00% Coil/Unstructured: 39.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.59
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.59
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 119 Family Scaffolds
PF01135	PCMT	3.36
PF00589	Phage_integrase	3.36
PF02560	Cyanate_lyase	1.68
PF13545	HTH_Crp_2	1.68
PF09851	SHOCT	1.68
PF04392	ABC_sub_bind	1.68
PF03734	YkuD	1.68
PF02597	ThiS	1.68
PF00156	Pribosyltran	1.68
PF13356	Arm-DNA-bind_3	0.84
PF00497	SBP_bac_3	0.84
PF13202	EF-hand_5	0.84
PF12695	Abhydrolase_5	0.84
PF00574	CLP_protease	0.84
PF13365	Trypsin_2	0.84
PF13683	rve_3	0.84
PF11272	DUF3072	0.84
PF13499	EF-hand_7	0.84

COG ID	Name	Functional Category	% Frequency in 119 Family Scaffolds
COG2226	Ubiquinone/menaquinone biosynthesis C-methylase UbiE/MenG	Coenzyme transport and metabolism [H]	3.36
COG2518	Protein-L-isoaspartate O-methyltransferase	Posttranslational modification, protein turnover, chaperones [O]	3.36
COG2519	tRNA A58 N-methylase Trm61	Translation, ribosomal structure and biogenesis [J]	3.36
COG4122	tRNA 5-hydroxyU34 O-methylase TrmR/YrrM	Translation, ribosomal structure and biogenesis [J]	3.36
COG0616	Periplasmic serine protease, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	1.68
COG0740	ATP-dependent protease ClpP, protease subunit	Posttranslational modification, protein turnover, chaperones [O]	1.68
COG1376	Lipoprotein-anchoring transpeptidase ErfK/SrfK	Cell wall/membrane/envelope biogenesis [M]	1.68
COG1513	Cyanate lyase	Inorganic ion transport and metabolism [P]	1.68
COG1977	Molybdopterin synthase sulfur carrier subunit MoaD	Coenzyme transport and metabolism [H]	1.68
COG2104	Sulfur carrier protein ThiS (thiamine biosynthesis)	Coenzyme transport and metabolism [H]	1.68
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	1.68
COG3034	Murein L,D-transpeptidase YafK	Cell wall/membrane/envelope biogenesis [M]	1.68
COG1030	Membrane-bound serine protease NfeD, ClpP class	Posttranslational modification, protein turnover, chaperones [O]	0.84

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
All Organisms	root	All Organisms	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
cellular organisms	root	All Organisms → cellular organisms	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.53 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	17.65 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	13.45 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	10.08 %
Enterobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales	2.52 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.52 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.04 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.52 %
Enterobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae	2.52 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.68 %
Kaistiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.04 %
Escherichia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia	2.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.52 %
Bauldia	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia	0.84 %
Rhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes	0.84 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.04 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	2.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.52 %
unclassified Bauldia	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia	0.84 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	0.84 %
Hyphomicrobium sulfonivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium sulfonivorans	0.84 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	76.47 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.04 %
Escherichia coli	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	2.52 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.52 %
Bauldia sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	0.84 %
Rhodoplanes piscinae	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	0.84 %
Hyphomicrobium sulfonivorans	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium sulfonivorans	0.84 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459023\|GZGNO2B01DCW2Y	Not Available	510	Open in IMG/M
3300004152\|Ga0062386_100436660	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1058	Open in IMG/M
3300005332\|Ga0066388_102621822	Not Available	918	Open in IMG/M
3300005332\|Ga0066388_103761511	Not Available	774	Open in IMG/M
3300005363\|Ga0008090_13393540	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium → Hyphomicrobium sulfonivorans	616	Open in IMG/M
3300005439\|Ga0070711_100132217	Not Available	1860	Open in IMG/M
3300005536\|Ga0070697_101301991	Not Available	648	Open in IMG/M
3300005764\|Ga0066903_101126814	All Organisms → cellular organisms → Bacteria	1449	Open in IMG/M
3300005764\|Ga0066903_102457140	All Organisms → cellular organisms → Bacteria	1008	Open in IMG/M
3300005764\|Ga0066903_103032370	Not Available	910	Open in IMG/M
3300005764\|Ga0066903_104457207	Not Available	747	Open in IMG/M
3300006041\|Ga0075023_100059432	Not Available	1222	Open in IMG/M
3300006047\|Ga0075024_100634323	Not Available	579	Open in IMG/M
3300006059\|Ga0075017_100852501	Not Available	706	Open in IMG/M
3300006102\|Ga0075015_100900359	Not Available	536	Open in IMG/M
3300006172\|Ga0075018_10654869	Not Available	563	Open in IMG/M
3300006174\|Ga0075014_100056844	Not Available	1701	Open in IMG/M
3300006806\|Ga0079220_10166841	Not Available	1234	Open in IMG/M
3300010048\|Ga0126373_11170039	Not Available	835	Open in IMG/M
3300010048\|Ga0126373_11436268	Not Available	755	Open in IMG/M
3300010048\|Ga0126373_12521674	Not Available	573	Open in IMG/M
3300010358\|Ga0126370_11948143	Not Available	573	Open in IMG/M
3300010361\|Ga0126378_13221544	Not Available	519	Open in IMG/M
3300010376\|Ga0126381_100813574	Not Available	1342	Open in IMG/M
3300010376\|Ga0126381_101606278	Not Available	939	Open in IMG/M
3300010398\|Ga0126383_10620911	All Organisms → cellular organisms → Bacteria → Proteobacteria	1154	Open in IMG/M
3300012199\|Ga0137383_11367333	Not Available	502	Open in IMG/M
3300012357\|Ga0137384_10302454	Not Available	1330	Open in IMG/M
3300016270\|Ga0182036_10578235	Not Available	898	Open in IMG/M
3300016270\|Ga0182036_11073633	Not Available	666	Open in IMG/M
3300016270\|Ga0182036_11632433	Not Available	543	Open in IMG/M
3300016294\|Ga0182041_10150419	Not Available	1796	Open in IMG/M
3300016294\|Ga0182041_10419678	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1143	Open in IMG/M
3300016294\|Ga0182041_10609341	Not Available	960	Open in IMG/M
3300016294\|Ga0182041_11218471	Not Available	687	Open in IMG/M
3300016294\|Ga0182041_11511795	Not Available	618	Open in IMG/M
3300016319\|Ga0182033_10329236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1270	Open in IMG/M
3300016319\|Ga0182033_10839608	Not Available	811	Open in IMG/M
3300016319\|Ga0182033_11052574	Not Available	725	Open in IMG/M
3300016319\|Ga0182033_11647868	All Organisms → cellular organisms → Bacteria	581	Open in IMG/M
3300016319\|Ga0182033_12091774	Not Available	516	Open in IMG/M
3300016341\|Ga0182035_10237323	Not Available	1465	Open in IMG/M
3300016341\|Ga0182035_10692724	Not Available	887	Open in IMG/M
3300016357\|Ga0182032_11826157	Not Available	531	Open in IMG/M
3300016387\|Ga0182040_11015329	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	692	Open in IMG/M
3300016404\|Ga0182037_10115503	Not Available	1961	Open in IMG/M
3300016404\|Ga0182037_10868933	Not Available	781	Open in IMG/M
3300016404\|Ga0182037_11905486	Not Available	532	Open in IMG/M
3300016404\|Ga0182037_11918881	Not Available	531	Open in IMG/M
3300016404\|Ga0182037_12111891	Not Available	507	Open in IMG/M
3300016422\|Ga0182039_10040314	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3094	Open in IMG/M
3300016422\|Ga0182039_11171098	Not Available	694	Open in IMG/M
3300016422\|Ga0182039_12011619	Not Available	531	Open in IMG/M
3300016445\|Ga0182038_10767841	Not Available	843	Open in IMG/M
3300016445\|Ga0182038_12094576	Not Available	513	Open in IMG/M
3300017822\|Ga0187802_10272524	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	657	Open in IMG/M
3300017932\|Ga0187814_10129407	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	938	Open in IMG/M
3300017959\|Ga0187779_10757302	Not Available	660	Open in IMG/M
3300017974\|Ga0187777_11429867	Not Available	511	Open in IMG/M
3300017999\|Ga0187767_10371279	Not Available	509	Open in IMG/M
3300018001\|Ga0187815_10241374	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Enterobacterales → Enterobacteriaceae → Escherichia → Escherichia coli	764	Open in IMG/M
3300021168\|Ga0210406_10148273	Not Available	1970	Open in IMG/M
3300021168\|Ga0210406_10587112	Not Available	871	Open in IMG/M
3300021433\|Ga0210391_10322433	Not Available	1212	Open in IMG/M
3300021560\|Ga0126371_12897343	Not Available	581	Open in IMG/M
3300025915\|Ga0207693_11133298	Not Available	593	Open in IMG/M
3300026810\|Ga0207801_107035	Not Available	723	Open in IMG/M
3300026895\|Ga0207758_1024214	Not Available	577	Open in IMG/M
3300026942\|Ga0207783_1003682	Not Available	1668	Open in IMG/M
3300027775\|Ga0209177_10155152	Not Available	780	Open in IMG/M
3300027894\|Ga0209068_10980181	Not Available	502	Open in IMG/M
3300027898\|Ga0209067_10353478	All Organisms → cellular organisms → Bacteria	816	Open in IMG/M
3300027910\|Ga0209583_10658022	Not Available	541	Open in IMG/M
3300031572\|Ga0318515_10647908	Not Available	560	Open in IMG/M
3300031573\|Ga0310915_10889738	Not Available	624	Open in IMG/M
3300031668\|Ga0318542_10379460	Not Available	729	Open in IMG/M
3300031668\|Ga0318542_10702636	Not Available	529	Open in IMG/M
3300031719\|Ga0306917_10016923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4390	Open in IMG/M
3300031719\|Ga0306917_10636283	Not Available	839	Open in IMG/M
3300031744\|Ga0306918_10136532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1796	Open in IMG/M
3300031744\|Ga0306918_10495976	Not Available	956	Open in IMG/M
3300031744\|Ga0306918_11040336	Not Available	635	Open in IMG/M
3300031748\|Ga0318492_10182371	Not Available	1069	Open in IMG/M
3300031754\|Ga0307475_11073120	Not Available	631	Open in IMG/M
3300031754\|Ga0307475_11482093	Not Available	521	Open in IMG/M
3300031833\|Ga0310917_10303013	Not Available	1081	Open in IMG/M
3300031879\|Ga0306919_11086971	Not Available	610	Open in IMG/M
3300031879\|Ga0306919_11374005	Not Available	533	Open in IMG/M
3300031890\|Ga0306925_10518523	Not Available	1267	Open in IMG/M
3300031890\|Ga0306925_11918097	All Organisms → cellular organisms → Bacteria	562	Open in IMG/M
3300031910\|Ga0306923_10090289	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3447	Open in IMG/M
3300031910\|Ga0306923_11229517	Not Available	799	Open in IMG/M
3300031910\|Ga0306923_11505966	Not Available	704	Open in IMG/M
3300031942\|Ga0310916_10114575	Not Available	2184	Open in IMG/M
3300031942\|Ga0310916_10357071	Not Available	1241	Open in IMG/M
3300031942\|Ga0310916_10740465	Not Available	830	Open in IMG/M
3300031942\|Ga0310916_11693477	Not Available	511	Open in IMG/M
3300031945\|Ga0310913_10256873	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Kaistiaceae → Bauldia → unclassified Bauldia → Bauldia sp.	1228	Open in IMG/M
3300031945\|Ga0310913_10258559	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1224	Open in IMG/M
3300031945\|Ga0310913_10605440	Not Available	777	Open in IMG/M
3300031946\|Ga0310910_10286753	Not Available	1293	Open in IMG/M
3300031946\|Ga0310910_10746331	Not Available	772	Open in IMG/M
3300031946\|Ga0310910_11254028	Not Available	574	Open in IMG/M
3300031947\|Ga0310909_10109631	All Organisms → cellular organisms → Bacteria → Proteobacteria	2229	Open in IMG/M
3300031947\|Ga0310909_10253826	All Organisms → cellular organisms → Bacteria	1469	Open in IMG/M
3300031947\|Ga0310909_10697573	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	844	Open in IMG/M
3300031947\|Ga0310909_11013981	Not Available	677	Open in IMG/M
3300031959\|Ga0318530_10364470	Not Available	599	Open in IMG/M
3300032001\|Ga0306922_10057046	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4054	Open in IMG/M
3300032001\|Ga0306922_10262699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1855	Open in IMG/M
3300032001\|Ga0306922_10465678	All Organisms → cellular organisms → Bacteria	1349	Open in IMG/M
3300032059\|Ga0318533_10713665	Not Available	736	Open in IMG/M
3300032064\|Ga0318510_10270659	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	702	Open in IMG/M
3300032076\|Ga0306924_11850504	Not Available	627	Open in IMG/M
3300032076\|Ga0306924_12543775	Not Available	512	Open in IMG/M
3300032174\|Ga0307470_10532343	Not Available	864	Open in IMG/M
3300032180\|Ga0307471_101039066	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → Rhodoplanes piscinae	986	Open in IMG/M
3300032180\|Ga0307471_101607619	Not Available	806	Open in IMG/M
3300032205\|Ga0307472_100696458	Not Available	913	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	89.08%
Aquatic	Environmental → Aquatic	10.92%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	89.08%
Sediment	Environmental → Aquatic → Sediment	7.56%
Freshwater	Environmental → Aquatic → Freshwater	3.36%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	76.47%
Loam	Environmental → Terrestrial → Soil → Loam	10.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	7.56%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.36%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	2.52%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	63.87%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	10.08%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	7.56%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	7.56%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	2.52%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	2.52%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	2.52%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.68%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.84%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.84%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	36.97%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	21.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	7.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	7.56%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.56%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	5.04%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	2.52%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	2.52%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	2.52%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	1.68%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.68%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.84%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grass Soil	0.84%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.84%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459023	Grass soil microbial communities from Rothamsted Park, UK - FA3 (control condition)	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006041	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014	Environmental	Open in IMG/M
3300006047	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006806	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012357	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_60_16 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300017932	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017974	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP5_10_MG	Environmental	Open in IMG/M
3300017999	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP10_10_MG	Environmental	Open in IMG/M
3300018001	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW-S_5	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021433	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-O	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026810	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 16 (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300026942	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 63 (SPAdes)	Environmental	Open in IMG/M
3300027775	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control (SPAdes)	Environmental	Open in IMG/M
3300027894	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012 (SPAdes)	Environmental	Open in IMG/M
3300027898	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2013 (SPAdes)	Environmental	Open in IMG/M
3300027910	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Straight Creek_MetaG_SC_2014 (SPAdes)	Environmental	Open in IMG/M
3300031572	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f19	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031959	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f24	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032174	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_05	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FA3_00892170	2170459023	Grass Soil	KADARNLVGIIGSDKTKTQTYCQIHDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFCRLIDIEKHVDLNSRDGKEIASIVATHGESCGGQ
Ga0062386_1004366601	3300004152	Bog Forest Soil	QIDDLSEQLIQAVQEKDRKNANALAEKITELYKKMGPEFAALMDIKKHVDLNSRDGQEIASIVASLGESCPH*
Ga0066388_1026218222	3300005332	Tropical Forest Soil	DKTKTQTYCQIYDLSEQLLQTVQGKDMKKAKALAEKIAELDIKMGPEFAALIDIEKQVDLDSRDGQEIASIVATLGESCSH*
Ga0066388_1037615113	3300005332	Tropical Forest Soil	CQIEDLTEQLDQAVEKRDTKTAKALVERIAELNKKMGPDFAALVDIEKHVDLNSRDGQEIASIVASLGESCGEK*
Ga0008090_133935401	3300005363	Tropical Rainforest Soil	GSDKTKTRTYCQLNELSEQLDQAVEKKDRKKADALAKKIDQLSKKMGPEFAALVDIERQLDPNSPDGQEIASIIGSLGESCGGE*
Ga0070711_1001322174	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MPVQIKRPNLIGIIGSDKTKTQTYCQIHDLSEQLIQAIQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNLPDGQEIASIVATLGESCGGQ*
Ga0070697_1013019911	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	LKADARNLVGIIGSDKTKTQTYCQIEDLLEQLIEAVQKKDRTKVRALSEKIVELDKKMGPEFAALIDIKKHVDLNSPDGQEIASMVASLGESCPY*
Ga0066903_1011268141	3300005764	Tropical Forest Soil	LTEQLDQAVQKSDTKTAKALVQRIAELNKKMGPEFAALVDIEKHIDLNSPDGQEVASVVASLGESCGKE*
Ga0066903_1024571401	3300005764	Tropical Forest Soil	VGIIGSDKTKTRTYCQINELTEQLDQAVENNDTKKAKALAEKIAKLTKKMGPEFAALLDIERQVDLKSQDGQEIAAIVASLGESCGE*
Ga0066903_1030323701	3300005764	Tropical Forest Soil	DKTKIQTYCQIEDLSEQLDQAVQNGDIKKGKALAEKIAGLNKKMGPKFAALVDIEKHVDLNSQDGQEIASIVASLGESCGER*
Ga0066903_1044572072	3300005764	Tropical Forest Soil	KTQTYCQIEDLSEQLIQAVQEKDRKKANALAEKIAELYKKVGPELAALIDIEKHVDLNSRDGQEIASIVASLGESCTH*
Ga0075023_1000594324	3300006041	Watersheds	NVAKLKADARNLVGIIGSDKTKTQTYCQIHDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSPDGKEIASIVASLGESCPH*
Ga0075024_1006343232	3300006047	Watersheds	VGIIGSDKTKTQTYCQLEDLSEQLDQAVQQRDTKKARALAEKSAELKKKMGPEFAALLDIEKYIDLNSPDGQEIASIVATLGESCGGQ*
Ga0075017_1008525011	3300006059	Watersheds	YDLSEQLLQTVQGEDIKKAKALAEKIAELDKKMGPEFAALIDIEKQVDLDSRDGQEIASIVATLGESCPH*
Ga0075015_1009003591	3300006102	Watersheds	VAKLKADARNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH*
Ga0075018_106548691	3300006172	Watersheds	DKTKTQTYCQIDDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH*
Ga0075014_1000568443	3300006174	Watersheds	LVGIIGSDKTKTQTYCQLEDLSEQLDQAVQQRDTKKARALAEKSAELKKKMGPEFAALLDIEKYIDLNSPDGQEIASIVATLGESCGGQ*
Ga0079220_101668413	3300006806	Agricultural Soil	LPIDDLSEQLIQAVEEKDRKKADALAEKIAVLNTKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH*
Ga0126373_111700391	3300010048	Tropical Forest Soil	VTKLKFDARNLVGIIGSDKTKIQTFCQIEDLSEQADQAFQSGDIKKAKALAEKIAELNKKMGPEFAALIDLEKHVDLNSRDGQEIASIVASLGESCGEK*
Ga0126373_114362681	3300010048	Tropical Forest Soil	NLVGIIGGDKTKTQTYCQIEDLSEQLIQAVQEKDRKKANTLAEKIAELNKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH*
Ga0126373_125216741	3300010048	Tropical Forest Soil	AKLKADARNLVGIIGSDKTKTQTYCQIYDLSEQLLQAVQEKDIKKANALAEKIAKLNKKMGPEFAALIDIEKHVDLDSRDGQEIVSIVASLGESCGQQ*
Ga0126370_119481433	3300010358	Tropical Forest Soil	YCQIHELSEQLIQAVQEKERKRANALAEKIAELYKKMGPEFAALIDIEKHVDLKSRDGQEIASIVASLGESCPH*
Ga0126378_132215441	3300010361	Tropical Forest Soil	NELSEQLDQAVQNKDTKTAKALVEKIAGLSKKMGPEFASLLDIERQVDLGSQDGQEIASIVASLSESCGE*
Ga0126381_1008135743	3300010376	Tropical Forest Soil	GSDKTKTQTYCQIEDLSEQLIQAVQGKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH*
Ga0126381_1016062783	3300010376	Tropical Forest Soil	VAKLKADARNLVGIIGSDKTKTQTYCQIEDLSEQLIQAVQEKDRKKTNALAEKIAELYKKMGPEFAALIDIEKHVDLKSRDGQEIASIVASLGESCPH*
Ga0126383_106209111	3300010398	Tropical Forest Soil	LKDDARNLVGIIGSDKTKTQTYCQIEDLSEQLLQVVEEKDRKKAQALTKKIAELNKKMGPEFAALIDIEKHVDLDSRDGQEIASIVASLGESCGEK*
Ga0137383_113673331	3300012199	Vadose Zone Soil	NVAKLKADARNLVGIIGSDKTKTQTYCQIHDLSEQLIRAVKQKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLDSRDGQEIASIVATLGESCPH*
Ga0137384_103024544	3300012357	Vadose Zone Soil	KADERNLVGIIGSDKNKTQTYCQIYDLSEQLLQAVREKDRKKAKALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK*
Ga0182036_105782352	3300016270	Soil	ARNLVGLIGSDKTKTQTYCRIHDLREQLIQAVQEKDRKKANALAERIAELYKKMGLEFAALIDIEKHVDLNSRDGQEIVSIVASLGESCPH
Ga0182036_110736332	3300016270	Soil	LKSDARNLVGVIGSDKAKIQTYCQIVDLTEQLDQAVQEKDSQKAKALVKKIAELNKKMGPEFAALIDIEKHVDLDSRDGQEIASIVASLGESCGEK
Ga0182036_116324331	3300016270	Soil	QAQPDPAKLKADARNLVGIIGSDKSKIQTYCRIDALSEQLEQAIQEKDSKKAKALAEKIAELNKKMGPKYAALVDIEKHIDLNSPDGQEIASIAASLGESCGQE
Ga0182041_101504193	3300016294	Soil	QIHDLSEQLIQAVQEKDRRTANALAEKIAELYKKTGPEFAALIDIEKHVDLKSRDGQEIASIVASLGESCPH
Ga0182041_104196783	3300016294	Soil	VGIIGSDKTKIQTYCQIDYLSEQLDQAVQNRDTKKAKALVQKIAELFKKMGPDFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0182041_106093411	3300016294	Soil	CQIDDLSEQLLQGVQEKDRKKANALAEKIAELNKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0182041_112184711	3300016294	Soil	KTKIQTYCQIEDLSEQLLQVVEEKDRKKAQALTKKIAELNKKMGPEFAALIDIEKHVDLDSRDGQEIASIVASLGESCGEK
Ga0182041_115117951	3300016294	Soil	TQTYCQINELSEQLGQAVQNKDRKKAKALAEKIAKLSKKMGPEFAALIDIEKHVNLDSRDGQEIASIVASLGESCGEK
Ga0182033_103292362	3300016319	Soil	QQNVAKLKADARNLVGIIGSDKTKTQTYCQIEDLSEQLIQAVQEKDRKNANALAEKIAELNKKMGPEFAALIDIEKRVDLNSRDGQEIASIVASLGESCPH
Ga0182033_108396082	3300016319	Soil	SNKAKIQTYCQIEDLTEQLDQAVEKRDTKTAKALVGRIAELTKKMGPEFAALVDIEKHVDLNSPDGQEIASIVASLGESCGKE
Ga0182033_110525743	3300016319	Soil	GSNKAKIQTYCQIEDLTEQLDQAVEKRDAKTAKALVGRIAELTKKMGPEFAALVDIEKRVDLNSPDGQEIASIVASLGESCGKE
Ga0182033_116478682	3300016319	Soil	IGSDKTKTQTYCQIDDLSEQLIQAVQEKNRKKANALAEKIAELNKKIGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0182033_120917741	3300016319	Soil	YCQIDDLTEQLDQAVQEKDSQKAKALVKKIAELNKKMGPDFARLVDIEKHFDLDSQDGQEIASIVASLGESCGEK
Ga0182035_102373231	3300016341	Soil	QTYCQIVDLTEQFDQAVQEKDSQKAKALVKKIAELNKKMSSQFAALVDIEKHVDLSSPGGQEIASIVASLGESCGEK
Ga0182035_106927241	3300016341	Soil	GIIGSDKTKTQTYCQIDDLSEQLIQAVQEKNRKKANALAEKIAELNKKIGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0182032_118261571	3300016357	Soil	DDLSEQLNQAVQEKNRKKAEALSQKISELYKKMGPEFAALIDIEKQVDLDSRDGQEIASIVATLGESCPH
Ga0182040_110153291	3300016387	Soil	VAKLKSDARNLVGVIGSDKAKIQTYCQIVDLTEQFDQAVQEKDSQKAKALVKKIAELNKKMGSQFAALIDIEKHVDLDSRDGQEIASIVASLGESCEEK
Ga0182037_101155031	3300016404	Soil	KGDARNLVGIIGSDKTKIQTYCQIEDLSEQLLQVVEEKDRKKAQALTKKIAELNKKMGPEFAALIDIEKHVDLDSRDGQEIASIVASLGESCGEK
Ga0182037_108689331	3300016404	Soil	RNLVGIIGSDKTKIQTYCQIEDLSEQLVQAVQEKDRKNAEALAEKIAKLNKKMGPEFAALIDIEKHVDLNSRDGEEIASIVASLGESCGEK
Ga0182037_119054861	3300016404	Soil	RNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKANALAEKIAELHKKMGPAFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0182037_119188812	3300016404	Soil	LKADARNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKNRKKANALAEKIAELNKKIGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0182037_121118911	3300016404	Soil	TYCQIYDLSEQLLQTVQEKDIKKAKALAEKIAGLNKKMGPEFAALIDIEKQVDLDSQDGQEIASIVATLGESCPH
Ga0182039_100403145	3300016422	Soil	SDKTKTQTYCQIHDLSEQLIQAVQEKDRRTANALAEKIAELYKKTGPEFAALIDIEKHVDLKSRDGQEIASIVASLGESCPH
Ga0182039_111710981	3300016422	Soil	NLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKANTLAEKIAELNKKMGPKYAALVDIEKHIDLNSPDGQEIASIAASLGESCGQE
Ga0182039_120116192	3300016422	Soil	ADARNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKNRKKANALAEKIAELNKKIGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0182038_107678412	3300016445	Soil	KTKTQTYCQIEDLTEQLDGAVQEKDSQKAKALVKKIAQLNKKMGPDFARLVDIKNHVDLDSQDGQEIAPIVASLGESCGEK
Ga0182038_120945761	3300016445	Soil	TYCQIDDLSEQLLQAVQEKDRKGANALAEKSAELNKKMGPECAALIGIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0187802_102725242	3300017822	Freshwater Sediment	EDLSEQLDQAVQQRDTKKARALAEKSAELKKKMAPEFATQLDIEKYIDLNSPDGQEIASIVATLGESCGGQ
Ga0187814_101294071	3300017932	Freshwater Sediment	QLDQAVQQRDTKKARALAEKSAELKKKMAPEFATQLDIEKYIDLNSPDGQEIASIVATLGESCGGQ
Ga0187779_107573022	3300017959	Tropical Peatland	NLVGIIGSNKAKIQIYCQIDDLTEQLDQAVEKRDTKTAKALVERIAELNKKMGPEFAALVDIEKHVDLNSPDGQEIASIVSSLGESCPH
Ga0187777_114298671	3300017974	Tropical Peatland	QNVAKLKADARNLVGIIGSNKTKIQTYCQIDDLSEQLIQAVQEKDRKKANALAEKIPELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0187767_103712791	3300017999	Tropical Peatland	QQQNVAKLKADARNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKANALAKKIPELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0187815_102413741	3300018001	Freshwater Sediment	DKTKTQTYCQLEDLSEQLDQAVQQRDTKKARALAEKSAELKKKMAPEFATQLDIEKYIDLNSPDGQEIASIVATLGESCGGQ
Ga0210406_101482732	3300021168	Soil	MPVQIKRPNLIGIIGSDKTKTQTYCQIHDLSEQLIQAVQEKDRKKANALAEKIAESYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0210406_105871121	3300021168	Soil	MPETSSASLVAIRLRPYCQIDDLSEQLIQAIQEKDGKKANALAEKITELYKKMGPEFAALIDIKKRVDLNSRDGQEIASIIASLGESCPH
Ga0210391_103224333	3300021433	Soil	KTQIYCQIGDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGREIASIVASLGESCPH
Ga0126371_128973431	3300021560	Tropical Forest Soil	QSVAKLKADARNLVGIIGSDKTKTQTYCQIYDLSEQLLQAVQEKDIKKANALAEKIAKLNKKMGPEFAALIDIEKHVDLDSRDGQEIASIVASLGESCGEK
Ga0207693_111332982	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	QERNVAKLKADARNLVGIIGGDKTKTQTYCQIYDLSEQLLRAVQEEDRKKAKALAERIAELNKKMGPEFAALINIEKHVDLDSRDGQEIASIVATLGESRPH
Ga0207801_1070351	3300026810	Tropical Forest Soil	NVAKLKADARNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKANALAEKIPELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0207758_10242141	3300026895	Tropical Forest Soil	CQIDDLRMQLIQAVQKNNRKKANALAEKIPELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0207783_10036821	3300026942	Tropical Forest Soil	LVGIIGSDKTKTQTYCQIEDLSEQLIQAVQEKDRKNANALAEQIAELNKKMGPEFAALIDIEKHIDLDSPDGQEIASIVASLGESCGER
Ga0209177_101551521	3300027775	Agricultural Soil	IGSDKTKTQTYCQIDDLSEQLIQAIQNKDRKKANALAEKIIELYKKMGPEFAALIDIKKRVDLNSPDGQEIASIVASLGESCPH
Ga0209068_109801812	3300027894	Watersheds	LVGIIGSDKTKTQTYCQIHDLSEQLIQAVQEKDRKNANALAEKITELYKKMGPEFAALLDIKKHVDLNSPDGQEIASIVATLGESCGGQ
Ga0209067_103534781	3300027898	Watersheds	RNLVGIIGSDKTKTQTYCQLEDLSEQLDQAVQQRDTKKARALAEKSAELKKKMGPEFAALLDIEKYIDLNSPDGQEIASIVATLGESCGGQ
Ga0209583_106580222	3300027910	Watersheds	SDKTKTQIYCQIEDLSEQLDQAVQQRDSKAARALVEKIAELNKKMGPEFAALVDIEKRVDLNSPDGQAIASIVASLGEPCGGR
Ga0318515_106479082	3300031572	Soil	RNLVSIIGSDKTKTQTYCQIEDLSEQLVQAVQEKDRKNAKALAEKIAKLNKKMGPEFAALIDIEKHVDLNSRDGEEIASIVASLGESCGEK
Ga0310915_108897383	3300031573	Soil	TYCRIDALSEQLEQAIQEKDSKKAKALAEKIAELNKKMGPKYAALVDIEKHIDLNSPDGQEIASIAASLGESCGQE
Ga0318542_103794601	3300031668	Soil	LKDDARNLVGIIGSDKTKIQTYCQIEDLSEQLLQVVEEKDRKKAQALTKKIAELNKKMGPEFAALIDIEKHVDLDSRDGQEIASIVASLGQSCGEK
Ga0318542_107026361	3300031668	Soil	LKAGARNLVGIIGSDKTKTQTYCQIHDLSEQLIQAVQEKDRRTANALAERIAELYKKMGPEFAALIDIEKHVDLKSRDGQEIASIVASLGESCPH
Ga0306917_100169231	3300031719	Soil	YCQIGDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0306917_106362832	3300031719	Soil	GSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKASALAEKIAELNKKMGPEFAALIDIEKHVDLNSRDGQEIASIVVSLGESCGEK
Ga0306918_101365323	3300031744	Soil	VIKRQTKTQTYCQIEDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0306918_104959761	3300031744	Soil	LVAIRLRSRHCQIVDLTEQLDQAVQEKDSQKAKALVKKIAELNKKMGPEFAALIDIEKHVDLDSRDGEEIASIVASLGESCGEK
Ga0306918_110403361	3300031744	Soil	GIIGSDKTKAQTYCQIDDLSEQLLQAVQEKDRKKANALAEKIAELNKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLSESCGEK
Ga0318492_101823711	3300031748	Soil	LKADARNLVGIIGSDKTKTQIYCQIDDLSEQLNQAVQEKDRKKAEALSQKINELYKKMGPEFAALIDIEKHIDLDSPDGQEFASIVASLGESCGQE
Ga0307475_110731202	3300031754	Hardwood Forest Soil	IGSDKTKTQTYCQLEDLSEQLDQAVQQRDTKKARALAEKSAELNKKMGPEFAALLDIEKYIDLNSRDGQEIASIVATLGESCGGQ
Ga0307475_114820931	3300031754	Hardwood Forest Soil	YCQIEDQSEQLDQAVQQNDSKKARALVEKIAELNKKMGPEFAALVDIEKRVDLDSPDGQEIASIVATLGESCPH
Ga0310917_103030131	3300031833	Soil	ARNLVSIIGSDKTKTQTYCQIEDLSEQLVQAVQEKDRKNAKALAEKIAKLNKKMGPEFAALIDIEKHVDLNSRDGEEIASIVASLGESCGEK
Ga0306919_110869711	3300031879	Soil	IATNKAKIQTYCQIEDLTEQLDQAVEKRDTKTAKALVGRIAELTKKMGPEFAALVDIEKHVDLNSPDGQEIASIVASLGESCGKE
Ga0306919_113740051	3300031879	Soil	QNVAKLKADARNLVGIIGSDKTKTQTYCQIDDLTEQLDQAVEKRDTKTAKALVERIAELNKKMGPDFAALVDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0306925_105185231	3300031890	Soil	QPNIAKLKADPRNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKASALAEKIAELNKKMGPEFAALIDIEKHVDLNSRDGQEIASIVVSLGESCGEK
Ga0306925_119180972	3300031890	Soil	VGIIGSNKAKIQTYCQIEDLTEQLDQAVEKRDAKTAKALVGRIAELTKKMGPEFAALVDIEKRVDLNSPDGQEIASIVASLGESCGKE
Ga0306923_100902891	3300031910	Soil	IDDLSEQLIQAVQEKNRKKANALAEKIAELNKKIGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0306923_112295172	3300031910	Soil	VAKLKADARNLVGIIGSDKTKTQTYCQIDDLSEQLLQAVQEKDRKKANALAEKIAELNKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0306923_115059662	3300031910	Soil	KTKTQTYCQIQDLTEQLDGAVQEKDSQKAKALVKKIAQLNKKMGPDFARLVDIKNHVDLDSQDGQEIAPIVASLGESCGEK
Ga0310916_101145753	3300031942	Soil	KTKIQTYCQIEDLSEQLLQVVEEKDRKKAQALTKKIAELNKKMGPEFAALIDIEKHVDLDSRDGQEIASIVASLGQSCGEK
Ga0310916_103570712	3300031942	Soil	THENCQIVDLTEQFDQAVQEKDSQKAKALVKKIAELNKKMSSQFAALVDIEKHVDLSSPGGQEIASIVASLGESCGEK
Ga0310916_107404652	3300031942	Soil	NLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKNRKKANALAEKIAELNKKIGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0310916_116934772	3300031942	Soil	NLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKANALAEKIAELHKKMGPAFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0310913_102568732	3300031945	Soil	KAGARNLVGIIGSDKTKTQTYCQIHDLSEQLIQAVQEKDRRTANALAEKIAELYKKTGPEFAALIDIEKHVDLKSRDGQEIASIVASLGESCPH
Ga0310913_102585591	3300031945	Soil	KIQTYCQINDLTEQLDQAVQEKDSQKAKTLVKKIAELNKKMGPEFAALVDIEKHVDLNSQDGQEISSIVASLGESCGER
Ga0310913_106054401	3300031945	Soil	IIGSDKAKIQTYCQIEDLTEQLDQAVQEKDGQKAKALVKKIAELNKKMGPEFAALVDIEKHVDLNSQDGQEISLIVASLGESCGEK
Ga0310910_102867531	3300031946	Soil	RNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKNRKKANALAEKIAELNKKIGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCGEK
Ga0310910_107463311	3300031946	Soil	DARNLVGIIGSDKTKTQTYCQIDDLSEQLIQAVQEKDRKKANALAEKIAELHKKMGPAFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0310910_112540282	3300031946	Soil	NLVGIIGSDKTKTQIYCQIDDLVQQLIQAVEHKDRKEADALAKKIVELYKKMGPEFAALIDIKKRVDLNSRDGQEIASIVASLGESCPH
Ga0310909_101096311	3300031947	Soil	AKIQTYCQIDDLTEQLDQAVQEKDSQKAKALVKKIAELNKKMSSQFAALVDIEKHVDLSSPGGQEIASIVASLGESCGEK
Ga0310909_102538264	3300031947	Soil	YCQIYDLSEQLLQAVQEKDIKKANALAEKIAKLNKKMGPEFAALIDIEKQGDLDSRDGQEIASIVASLGESCGEK
Ga0310909_106975732	3300031947	Soil	DKTKTQTYCQIHDLSEELLQAVQEKDRKKANALAGKIAELNKKMGPEFAALIDIEKRVDLNSRDGQEIASIVASLGESCPH
Ga0310909_110139812	3300031947	Soil	KADARNLVGIIGSDKTKTQTYCQIEDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIAIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0318530_103644701	3300031959	Soil	QGPQPNIAKLKADARNLVGIIGSDKTKTQTYCQIDDLSEQLNQAVQEKDRKKAEALSQKISELYKKMGPEFAALIDIEKHIDLDSPDGQEFASIVASLGESCGQE
Ga0306922_100570466	3300032001	Soil	KTKTQTYCQIEDLSEQLIQAVQEKDRKNANALAEKIAELNKKMGPEFAALIDIEKRVDLNSRDGQEIASIVASLGESCPH
Ga0306922_102626992	3300032001	Soil	KSDARNLVGIIGSDKAKIQTYCQINDLTEQLDQAVQEKDSQKAKTLVKKIAELNKKMGPEFAALVDIEKHVDLNSQDGQEISSIVASLGESCGER
Ga0306922_104656781	3300032001	Soil	SRLGGRALRAHDQTYCQIYDLSEQLLQAVQEKDIKKANALAEKIAKLNKKMGPEFAALIDIEKQGDLDSRDGQEIASIVASLGESCGEK
Ga0318533_107136651	3300032059	Soil	AKIQTYCQIDDLTEQLHQAVQEKDSQKAKALVKKIAELNKKMSSQFAALVDIEKHVDLSSPGGQEIASIVASLGESCGEK
Ga0318510_102706592	3300032064	Soil	LKADARNLVGIIGGDKTKIQTYCQIEDLSEQLLQVVEEKDRKKAQALTKKIAELNKKMGPEFAALIDIEKHVDLDSRDGQEIASIVASLGESCEEK
Ga0306924_118505041	3300032076	Soil	NLVGIIGSDKTKTQTYCQIEDLSEQLIQAVQEKDKKTAKALAEKIAELKKKMGPEFASLIDIEKRVDLNSRDGQEIASIVASLGESCGQK
Ga0306924_125437752	3300032076	Soil	DKTKTQTYCQIEDLSEQLIQAVQKKDRKKANALAEKIAELYKKMGPEFAALIDIKKHVDLNSRDGQEIASIVATLGESCGRE
Ga0307470_105323431	3300032174	Hardwood Forest Soil	ICVLAPPLRSPVIIGSDKTKTQTYCEIDDLSEQLIQAVQEKDRKKANALAEKIAELYKKMGPEFAALIDIEKHVDLNSRDGQEIASIVASLGESCPH
Ga0307471_1010390661	3300032180	Hardwood Forest Soil	SDKTKTQTYCQIDDLSEQFDRAVQTKDSKTAKALAKKIAELNKKLGPEFGALVDIVKHVDLNSPDGQEIASIIASLGESCGD
Ga0307471_1016076192	3300032180	Hardwood Forest Soil	TKTQTYCQIRDLSDQLIQAVGEKDRKKANALAEKIAELYKKIGPEFAALIDIEKRVNPNSPDGKEIASIVASLGESCPH
Ga0307472_1006964581	3300032205	Hardwood Forest Soil	CQIHDLSEQLIQAVQEKDRKKANALAEKITESYKKMGAEFAALIDIEKHVDLNSRDGQEIASIVATLGESCGGQVR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075272

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences