NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F075371

Metagenome / Metatranscriptome Family F075371

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F075371
Family Type Metagenome / Metatranscriptome
Number of Sequences 119
Average Sequence Length 78 residues
Representative Sequence VGRVIAVLIAAAALSAGCGASRTAHGLTLDSILKRPGPDIGVTAGASEFVPGEVRFPFLVIANNAKPVERPTASVWVAKS
Number of Associated Samples 113
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 11.76 %
% of genes near scaffold ends (potentially truncated) 100.00 %
% of genes from short scaffolds (< 2000 bps) 85.71 %
Associated GOLD sequencing projects 108
AlphaFold2 3D model prediction Yes
3D model pTM-score0.25

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (55.462 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(19.328 % of family members)
Environment Ontology (ENVO) Unclassified
(30.252 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(42.017 % of family members)



 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      


 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Fibrous Signal Peptide: Yes Secondary Structure distribution: α-helix: 19.44%    β-sheet: 14.81%    Coil/Unstructured: 65.74%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  
pTM-score: 0.25
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.


 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF13424TPR_12 20.17
PF13432TPR_16 15.13
PF13560HTH_31 14.29
PF13181TPR_8 3.36
PF00515TPR_1 1.68
PF13414TPR_11 0.84
PF07690MFS_1 0.84
PF13977TetR_C_6 0.84
PF16177ACAS_N 0.84
PF00440TetR_N 0.84



 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms55.46 %
UnclassifiedrootN/A44.54 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300004114|Ga0062593_100769969All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria952Open in IMG/M
3300004156|Ga0062589_100477150Not Available1043Open in IMG/M
3300004157|Ga0062590_101475715All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium681Open in IMG/M
3300004479|Ga0062595_102306396Not Available531Open in IMG/M
3300005341|Ga0070691_10069968All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1702Open in IMG/M
3300005356|Ga0070674_100386684All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1139Open in IMG/M
3300005435|Ga0070714_102151401Not Available543Open in IMG/M
3300005441|Ga0070700_100558474All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium890Open in IMG/M
3300005444|Ga0070694_100849125All Organisms → cellular organisms → Bacteria751Open in IMG/M
3300005456|Ga0070678_100068906All Organisms → cellular organisms → Bacteria2639Open in IMG/M
3300005459|Ga0068867_100734032All Organisms → cellular organisms → Bacteria875Open in IMG/M
3300005467|Ga0070706_101393100Not Available642Open in IMG/M
3300005526|Ga0073909_10203755All Organisms → cellular organisms → Bacteria856Open in IMG/M
3300005530|Ga0070679_100033628All Organisms → cellular organisms → Bacteria5077Open in IMG/M
3300005543|Ga0070672_100071813All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium2754Open in IMG/M
3300005544|Ga0070686_100463233All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales977Open in IMG/M
3300005545|Ga0070695_100013789All Organisms → cellular organisms → Bacteria4860Open in IMG/M
3300005546|Ga0070696_100150505All Organisms → cellular organisms → Bacteria1708Open in IMG/M
3300005549|Ga0070704_101605978All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium600Open in IMG/M
3300005563|Ga0068855_100089373All Organisms → cellular organisms → Bacteria3556Open in IMG/M
3300005614|Ga0068856_100075371All Organisms → cellular organisms → Bacteria3341Open in IMG/M
3300005614|Ga0068856_100604583All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1117Open in IMG/M
3300005615|Ga0070702_101159903Not Available620Open in IMG/M
3300005616|Ga0068852_100068239All Organisms → cellular organisms → Bacteria3111Open in IMG/M
3300005616|Ga0068852_100663547All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1051Open in IMG/M
3300005842|Ga0068858_100481210All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1198Open in IMG/M
3300006163|Ga0070715_10425986All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria743Open in IMG/M
3300006196|Ga0075422_10180039Not Available859Open in IMG/M
3300006237|Ga0097621_100489513All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1113Open in IMG/M
3300006574|Ga0074056_10650434All Organisms → cellular organisms → Bacteria842Open in IMG/M
3300006579|Ga0074054_11142702All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Actinomycetales1026Open in IMG/M
3300006604|Ga0074060_11955979All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces2155Open in IMG/M
3300006755|Ga0079222_10363622All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria985Open in IMG/M
3300006903|Ga0075426_10026688All Organisms → cellular organisms → Bacteria4137Open in IMG/M
3300006954|Ga0079219_12201343Not Available531Open in IMG/M
3300009094|Ga0111539_11083238Not Available931Open in IMG/M
3300009174|Ga0105241_10759733Not Available890Open in IMG/M
3300009177|Ga0105248_12959937Not Available541Open in IMG/M
3300009551|Ga0105238_10438002All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1303Open in IMG/M
3300009553|Ga0105249_10028845All Organisms → cellular organisms → Bacteria5009Open in IMG/M
3300010038|Ga0126315_10042564All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2428Open in IMG/M
3300010147|Ga0126319_1236183All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1905Open in IMG/M
3300010154|Ga0127503_11123430All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1835Open in IMG/M
3300010366|Ga0126379_13626617Not Available517Open in IMG/M
3300010373|Ga0134128_10614566All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1209Open in IMG/M
3300010373|Ga0134128_10814520All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1035Open in IMG/M
3300010373|Ga0134128_12477716Not Available572Open in IMG/M
3300010375|Ga0105239_10835140All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1056Open in IMG/M
3300010375|Ga0105239_12294109Not Available628Open in IMG/M
3300010396|Ga0134126_10043767All Organisms → cellular organisms → Bacteria5631Open in IMG/M
3300010400|Ga0134122_10123405All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2078Open in IMG/M
3300010403|Ga0134123_10388484All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1275Open in IMG/M
3300011999|Ga0120148_1040371Not Available972Open in IMG/M
3300012208|Ga0137376_10564079All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria986Open in IMG/M
3300012356|Ga0137371_10952984Not Available652Open in IMG/M
3300012469|Ga0150984_112270911Not Available627Open in IMG/M
3300012502|Ga0157347_1021697Not Available755Open in IMG/M
3300012898|Ga0157293_10297299Not Available532Open in IMG/M
3300012911|Ga0157301_10038874All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1168Open in IMG/M
3300012951|Ga0164300_10082639All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1366Open in IMG/M
3300012957|Ga0164303_10138813All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1269Open in IMG/M
3300012961|Ga0164302_10600038Not Available798Open in IMG/M
3300012984|Ga0164309_10206847All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1354Open in IMG/M
3300012987|Ga0164307_10236718All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1266Open in IMG/M
3300013297|Ga0157378_11458556Not Available728Open in IMG/M
3300013307|Ga0157372_10609242All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1273Open in IMG/M
3300014326|Ga0157380_10096190All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2455Open in IMG/M
3300014968|Ga0157379_10960210Not Available813Open in IMG/M
3300014969|Ga0157376_11397436Not Available731Open in IMG/M
3300015373|Ga0132257_101073916Not Available1015Open in IMG/M
3300018073|Ga0184624_10256470All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria784Open in IMG/M
3300019255|Ga0184643_1290530All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1469Open in IMG/M
3300019269|Ga0184644_1512156Not Available821Open in IMG/M
3300019279|Ga0184642_1631030Not Available527Open in IMG/M
3300024251|Ga0247679_1028014Not Available951Open in IMG/M
3300024283|Ga0247670_1023204All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1111Open in IMG/M
3300024286|Ga0247687_1001008All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria3333Open in IMG/M
3300024323|Ga0247666_1056413Not Available791Open in IMG/M
3300024325|Ga0247678_1012903All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1230Open in IMG/M
3300025885|Ga0207653_10254003Not Available674Open in IMG/M
3300025899|Ga0207642_10386099Not Available835Open in IMG/M
3300025927|Ga0207687_10509093All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1006Open in IMG/M
3300026075|Ga0207708_11617391Not Available569Open in IMG/M
3300026078|Ga0207702_10572332All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1107Open in IMG/M
3300026078|Ga0207702_11811835Not Available602Open in IMG/M
3300026089|Ga0207648_11299243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium684Open in IMG/M
3300026121|Ga0207683_10747326All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium907Open in IMG/M
3300026763|Ga0207568_105621Not Available530Open in IMG/M
3300026827|Ga0207591_104644Not Available647Open in IMG/M
3300027787|Ga0209074_10110554Not Available941Open in IMG/M
3300028138|Ga0247684_1020387All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1045Open in IMG/M
3300028716|Ga0307311_10177790Not Available619Open in IMG/M
3300028722|Ga0307319_10291554Not Available539Open in IMG/M
3300028744|Ga0307318_10054516All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1326Open in IMG/M
3300028755|Ga0307316_10024181All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1956Open in IMG/M
3300028807|Ga0307305_10035178All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2296Open in IMG/M
3300028814|Ga0307302_10660903Not Available519Open in IMG/M
3300028819|Ga0307296_10498786Not Available666Open in IMG/M
3300028828|Ga0307312_11068830Not Available534Open in IMG/M
3300028872|Ga0307314_10130090Not Available712Open in IMG/M
3300028880|Ga0307300_10189673Not Available662Open in IMG/M
3300030785|Ga0102757_10018511All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1051Open in IMG/M
3300030829|Ga0308203_1033565Not Available725Open in IMG/M
3300030993|Ga0308190_1172196Not Available529Open in IMG/M
3300031058|Ga0308189_10011133All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1874Open in IMG/M
3300031093|Ga0308197_10303027Not Available590Open in IMG/M
3300031099|Ga0308181_1047640Not Available803Open in IMG/M
3300031231|Ga0170824_121966131Not Available757Open in IMG/M
3300031421|Ga0308194_10152322Not Available714Open in IMG/M
3300031469|Ga0170819_10502110Not Available551Open in IMG/M
3300031740|Ga0307468_100329983All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → unclassified Actinomycetia → Actinomycetia bacterium1126Open in IMG/M
3300031995|Ga0307409_100153314All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria2004Open in IMG/M
3300032075|Ga0310890_10409979All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1008Open in IMG/M
3300032180|Ga0307471_101435016Not Available850Open in IMG/M
3300034663|Ga0314784_039073Not Available829Open in IMG/M
3300034668|Ga0314793_144617Not Available533Open in IMG/M
3300034670|Ga0314795_064744Not Available674Open in IMG/M
3300034678|Ga0314803_039999Not Available778Open in IMG/M
3300034819|Ga0373958_0007092All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria1772Open in IMG/M



 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil19.33%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere9.24%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil5.88%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere5.88%
Terrestrial SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil5.04%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.04%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil4.20%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere3.36%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment2.52%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.52%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil2.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere2.52%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere2.52%
SoilEnvironmental → Aquatic → Freshwater → Groundwater → Unclassified → Soil1.68%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil1.68%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil1.68%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.68%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere1.68%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.84%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil0.84%
Serpentine SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil0.84%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil0.84%
PermafrostEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Permafrost0.84%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere0.84%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere0.84%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.84%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.84%
Arabidopsis RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Unclassified → Arabidopsis Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere0.84%
RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere0.84%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.84%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere0.84%
Rhizosphere SoilHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere Soil0.84%
Avena Fatua RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere0.84%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300004114Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5EnvironmentalOpen in IMG/M
3300004156Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004479Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAsEnvironmentalOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005467Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005530Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaGEnvironmentalOpen in IMG/M
3300005543Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaGHost-AssociatedOpen in IMG/M
3300005544Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaGEnvironmentalOpen in IMG/M
3300005545Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaGEnvironmentalOpen in IMG/M
3300005546Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaGEnvironmentalOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005563Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2Host-AssociatedOpen in IMG/M
3300005614Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2Host-AssociatedOpen in IMG/M
3300005615Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaGEnvironmentalOpen in IMG/M
3300005616Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2Host-AssociatedOpen in IMG/M
3300005842Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2Host-AssociatedOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006196Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1Host-AssociatedOpen in IMG/M
3300006237Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)Host-AssociatedOpen in IMG/M
3300006574Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtHAA (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006579Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLAB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006604Soil and rhizosphere microbial communities from Centre INRS-Institut Armand-Frappier, Laval, Canada - Soil microcosm metaTmtLMB (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300006755Agricultural soil microbial communities from Georgia to study Nitrogen management - GA PlitterEnvironmentalOpen in IMG/M
3300006903Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD5Host-AssociatedOpen in IMG/M
3300006954Agricultural soil microbial communities from Georgia to study Nitrogen management - GA ControlEnvironmentalOpen in IMG/M
3300009094Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009174Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaGHost-AssociatedOpen in IMG/M
3300009177Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaGHost-AssociatedOpen in IMG/M
3300009551Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaGHost-AssociatedOpen in IMG/M
3300009553Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaGHost-AssociatedOpen in IMG/M
3300010038Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106EnvironmentalOpen in IMG/M
3300010147Soil microbial communities from California, USA to study soil gas exchange rates - BB-CA-RED metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010154Soil microbial communities from Willow Creek, Wisconsin, USA - WC-WI-TBF metaT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010373Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4EnvironmentalOpen in IMG/M
3300010375Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaGHost-AssociatedOpen in IMG/M
3300010396Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2EnvironmentalOpen in IMG/M
3300010400Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2EnvironmentalOpen in IMG/M
3300010403Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3EnvironmentalOpen in IMG/M
3300011999Permafrost microbial communities from Nunavut, Canada - A28_65cm_6MEnvironmentalOpen in IMG/M
3300012208Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012356Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_40_16 metaGEnvironmentalOpen in IMG/M
3300012469Combined assembly of Soil carbon rhizosphereHost-AssociatedOpen in IMG/M
3300012502Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610Host-AssociatedOpen in IMG/M
3300012898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S194-509B-1EnvironmentalOpen in IMG/M
3300012911Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2EnvironmentalOpen in IMG/M
3300012951Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MGEnvironmentalOpen in IMG/M
3300012957Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MGEnvironmentalOpen in IMG/M
3300012961Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MGEnvironmentalOpen in IMG/M
3300012984Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MGEnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300013297Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaGHost-AssociatedOpen in IMG/M
3300013307Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaGHost-AssociatedOpen in IMG/M
3300014326Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300014969Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaGHost-AssociatedOpen in IMG/M
3300015373Combined assembly of cpr5 rhizosphereHost-AssociatedOpen in IMG/M
3300018073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_b1EnvironmentalOpen in IMG/M
3300019255Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_60 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019269Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019279Metatranscriptome of groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024251Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK20EnvironmentalOpen in IMG/M
3300024283Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK11EnvironmentalOpen in IMG/M
3300024286Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK28EnvironmentalOpen in IMG/M
3300024323Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK07EnvironmentalOpen in IMG/M
3300024325Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK19EnvironmentalOpen in IMG/M
3300025885Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025927Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026078Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026121Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026763Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G08A4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026827Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A4-11 (SPAdes)EnvironmentalOpen in IMG/M
3300027787Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter (SPAdes)EnvironmentalOpen in IMG/M
3300028138Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK25EnvironmentalOpen in IMG/M
3300028716Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_198EnvironmentalOpen in IMG/M
3300028722Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_368EnvironmentalOpen in IMG/M
3300028744Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367EnvironmentalOpen in IMG/M
3300028755Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356EnvironmentalOpen in IMG/M
3300028807Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_186EnvironmentalOpen in IMG/M
3300028814Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_183EnvironmentalOpen in IMG/M
3300028819Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_153EnvironmentalOpen in IMG/M
3300028828Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202EnvironmentalOpen in IMG/M
3300028872Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_204EnvironmentalOpen in IMG/M
3300028880Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_181EnvironmentalOpen in IMG/M
3300030785Forest soil microbial communities from USA, for metatranscriptomics studies - Jemez Pines PI 5C (Eukaryote Community Metatranscriptome)EnvironmentalOpen in IMG/M
3300030829Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_357 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300030993Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_185 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031058Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_184 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031093Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_198 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031099Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_152 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031231Coassembly Site 11 (all samples) - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031421Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_195 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031469Fir Spring Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031740Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05EnvironmentalOpen in IMG/M
3300031995Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2Host-AssociatedOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032180Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515EnvironmentalOpen in IMG/M
3300034663Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034668Metatranscriptome of lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034670Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034678Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48R4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300034819Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1Host-AssociatedOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap



 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0062593_10076996933300004114SoilVSRVFAVLALTAALTAGCGGSRASTGDTLGSILKRPGPNIAVTAGASDFSVGDLRYPFLVIAENAKPVERPAAT
Ga0062589_10047715033300004156SoilVSRVFAVLALTAALTAGCGGSRASTGDTLGSILKRPGPNIAVTAGASDFSVGDLRYPFLVIAENAKPVERPAATVWVAKSRDA
Ga0062590_10147571533300004157SoilVVVLAAALSAGCGASAPSSSGTLDAILERRGPDVSITAGASEFVSGAVRYPFLVIRNDARPVNRVTAGVWLATARDRK
Ga0062595_10230639613300004479SoilVGRVIAVLLAAAALSAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAKPVER
Ga0070691_1006996813300005341Corn, Switchgrass And Miscanthus RhizosphereVGRVIAVLLAAAALSAGCGASRTANGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLVIANNAKPVERPTAS
Ga0070674_10038668433300005356Miscanthus RhizosphereVGRVIAVLLAAAALSAGCGASRTANGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLVIANNAK
Ga0070714_10215140113300005435Agricultural SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKS
Ga0070700_10055847433300005441Corn, Switchgrass And Miscanthus RhizosphereVGRVIAVLLAAAALSAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGKVRF
Ga0070694_10084912513300005444Corn, Switchgrass And Miscanthus RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILNRPGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERPAADVWVATS
Ga0070678_10006890643300005456Miscanthus RhizosphereVGRVIAVLLAAAALSAGCGASRTANGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLV
Ga0068867_10073403213300005459Miscanthus RhizosphereVGRVIAVLLAAAALSAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGQVRFPFLVIANNAK
Ga0070706_10139310033300005467Corn, Switchgrass And Miscanthus RhizosphereVIVVLFAAAALSAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGKVRFPFLVIANNAK
Ga0073909_1020375513300005526Surface SoilVGRVIVVLFAAAALSAGCGASRTAHSLTLGSILKRPGPNIGVTAGASEFVPGEVRFPFLVIANNAKPVERATAS
Ga0070679_10003362863300005530Corn RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILKRPGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERPAADVWVATSRNGKPFRHVRA
Ga0070672_10007181343300005543Miscanthus RhizosphereVGRVIVVLFAAAALSAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGKVRF
Ga0070686_10046323313300005544Switchgrass RhizosphereVGRVIVVLFAAAALGAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAKPVERSTASVWVAKSRTGKPF
Ga0070695_10001378963300005545Corn, Switchgrass And Miscanthus RhizosphereVGRVIVVLFAAAALGAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAK
Ga0070696_10015050533300005546Corn, Switchgrass And Miscanthus RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILNRPGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERP
Ga0070704_10160597833300005549Corn, Switchgrass And Miscanthus RhizosphereVGRVGAVLVLAAALTAGCGGSHASSGTTLDSILKRPGPDIGVTAGAGDLSVGVVRFPFLVIANNA
Ga0068855_10008937353300005563Corn RhizosphereVGRVIAVLLAAAALSAGCGASRTANGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLVIANNAKPVERPT
Ga0068856_10007537153300005614Corn RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILNRPGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERPAADVWVATSRDG
Ga0068856_10060458313300005614Corn RhizosphereVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKP
Ga0070702_10115990323300005615Corn, Switchgrass And Miscanthus RhizosphereVGRVVAVLFAVAALSAGCGGSSSTHGLTLDSILQRPGPDIGITAGAGDFASGSVRFPFLLIANNAKPVERPAADVWVATSQNGKPFQHVRAKLEPIGVPGRSEA
Ga0068852_10006823913300005616Corn RhizosphereVGRVIAVLLAAAALSAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGKVRFPFLVIANNAKPVERATASVWVAKSRTAEPFERVSARLEPIGVPGRSG
Ga0068852_10066354713300005616Corn RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILNRSGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERPAADVWVATSRNGKPFRHVRAKLEPIGVPGRSEAAFGGVR
Ga0068858_10048121013300005842Switchgrass RhizosphereVGRVIVVLFAAAALSAGCGVSRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAKPVERPTA
Ga0070715_1042598613300006163Corn, Switchgrass And Miscanthus RhizosphereVGRVLAVLALTAALTAGCGSRGSTGVTLSEILKRPGPNIAVTAGASDFAVGDVRYPFLVIAEDAKPVERPAAT
Ga0075422_1018003933300006196Populus RhizosphereVGRVIAVLLATAALTAGCGGSRASDDGTLKSLVDRPGPAVGITAGASQFVPGEVRYPFLIIRN
Ga0097621_10048951333300006237Miscanthus RhizosphereVGRVIVVLFAAAALSAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAKPVERPTASVWVAKSRTGKPF
Ga0074056_1065043433300006574SoilMGRVIAVLFAAAALSAGCGASRTAHGLTLGSILERPGPDVGVTAGASEFVPGEVRFPFLVIASNAKPVERPTA
Ga0074054_1114270233300006579SoilMGRVIAVLFAAAALSAGCGASRTAHGLTLDAILKRPGPDIGVTAGASEFVPGEVRFPFLVIASNAKPVERPTASVWVAKSRTGKPFERVSARLEPIGVPGRSAPA
Ga0074060_1195597913300006604SoilMGRVIAVLFAAAALSAGCGASRTAHGLTLDAILKRPGPDIGVTAGASEFVPGEVRFPFLVIASNAKPVERPTASVWVAKSRTGKPFERVSARLEPIGVPGRSAPAF
Ga0079222_1036362213300006755Agricultural SoilVGRVLAVLVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFL
Ga0075426_1002668813300006903Populus RhizosphereVGRVIAVLLATAALTAGCGGSRASDDGTLKSLVDRPGPAVGITAGASQFVPGEVRYPFLIIRNDG
Ga0079219_1220134323300006954Agricultural SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSREDAPFARVTAKLEPIGVPGRS
Ga0111539_1108323833300009094Populus RhizosphereVGRLTAVVVLAAALSAGCGASGSGSSGTLDSILERPGPDVSVTAGASEFVPGAVRYPFLVIRNDARPVNRTSASVWVA
Ga0105241_1075973313300009174Corn RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILNRSGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERPAADVWVATSRNGKPFRHVRA
Ga0105248_1295993713300009177Switchgrass RhizosphereLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSREDAPFARVTAKLEPIGVPGRSEAAFGG
Ga0105238_1043800213300009551Corn RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILKRPGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERPAADVWVATSR
Ga0105249_1002884563300009553Switchgrass RhizosphereVGRVIAVLLAAAALSAGCGASRTANGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLVIASNA
Ga0126315_1004256443300010038Serpentine SoilVGRVIAVLFATAVLSAGCGGSRASGKASLADLLKRPGPTVGITAGASEFVPRDVRYPFVVIRND
Ga0126319_123618333300010147SoilVARVVAVLIAVAALGTGCGSSRSAGGLSLGSILDRPGPNIGVTAGASEFVPGAVRYPFLVIDNDA
Ga0127503_1112343013300010154SoilVGRVIAVLIAAAALSAGCGASRTAHGLTLDSILKRPGPDIGVTAGASEFVPGEVRFPFLVIANNAKPVERPTASVWVAKS
Ga0126379_1362661723300010366Tropical Forest SoilVGRVLAVLALTAAFTAGCGGSRASTGVTLGSILERPGPNIAVTAGASDFA
Ga0134128_1061456633300010373Terrestrial SoilLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSREDAPFARVTAKLEPIGVPGRSEAAFGGVTRIYVMHVRI
Ga0134128_1081452013300010373Terrestrial SoilVGRVIVVLFAAAALSAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAKPVERPTASVWVAKSRTGKP
Ga0134128_1247771613300010373Terrestrial SoilVVVIAAALLAGCGGSGSSSSGTLVDLMKRPGPDVSVTPGASEFVPGSVRYPFLVIRNDARPVERGAASVWL
Ga0105239_1083514033300010375Corn RhizosphereVGRVIAVLLAAAALSAGCGASRTANGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLVIASNAKPVERPTASVWVAKSRTAKPFEHVTGRLEPIGV
Ga0105239_1229410913300010375Corn RhizosphereVGRVLAVLALTAALTAGCGGSRPSTGVTLGSILARPGPNIAVTAGASDF
Ga0134126_1004376713300010396Terrestrial SoilLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSREDAPFARVTAKLEPIGVPGRSEAAFGGVTRIYVMHVR
Ga0134122_1012340513300010400Terrestrial SoilVGRVIVVLFAAAALSAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGQVRFPFLVIANNAKPVERSTASVWVAKSRTGKPFEHV
Ga0134123_1038848433300010403Terrestrial SoilVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILNRSGPDIGVTAGAGDFAPGSLRFPFLVIASNAKPVERPAADVWVATS
Ga0120148_104037133300011999PermafrostVGRFTAVVVCAAALTAGCGASSSSSARTLDGLLKRPGPEVSITAGASEFVPGPVRYPFLVIGNDARSVERSTAGVWIATARDRAPFARVTARLEPIGIPGRSA
Ga0137376_1056407933300012208Vadose Zone SoilVGRVGAVLILTAALAAGCGGSHASSGTTLDSILKRPGPDIGVTAGAGDLSVGLVRFPFLVIANNAKPVERPAATVWVAR
Ga0137371_1095298413300012356Vadose Zone SoilVGRFTAVVAFAVLLAAGCGGSTPSSAGTLDSILKRPGPDVGVTAGAADFVPGVVRFPFLVIASDARPVERPTAD
Ga0150984_11227091113300012469Avena Fatua RhizosphereVSRVAVLIAVAALGAGCGGSGSAGQTLDSILERPGPEIGVTAGASEFVPGDVRFPFLVIASNAKPV
Ga0157347_102169713300012502Arabidopsis RhizosphereVVVLAAALSAGCGASGSGSSRTLDSILKRPGADVAVTPGASEFVPGPVRYPFLVIRNDARPVNRKTATVWLATARDREPFEHVTAPLEPIGVPGVSEPA
Ga0157293_1029729923300012898SoilVSRVFAVLALTAALTAGCGGSRASTGDTLGSILKRPGPNIAVTAGASDFSVGDLRYPFLVIAENAKPVERPAATVWVAKSRDAAPFARVTAKLEPIG
Ga0157301_1003887433300012911SoilVGRVIAVLLATAALTAGCGGSRASDEGTLKSLVDRPGPAVGITAGASQFVPGQVRYPFLVIRNDGKPV
Ga0164300_1008263933300012951SoilVGRVIAVLFAAAALSAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGKVRFPFLVIAN
Ga0164303_1013881313300012957SoilVGRVIAVLFAAAALSAGCGASRTAHGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLVIASNAKPVERPTASVWVAKSRTGKPFQRV
Ga0164302_1060003833300012961SoilVGRVIAVLFAAAALSAGCGASRTAHGLTLGSILERPGPDVGVTAGASEFVPGEVRFPFLVIASNAKPVERPTASVWVAKSRTGKPFEHVT
Ga0164309_1020684733300012984SoilVGRVVAVLLAVAALSAGCGGSRTAHGLTLDAILQRPGPDIGVTAGAGEFVPGAVRFPFLVIANNAKPVERPAASVGVATSRSGRPFEHVSAKLEPIGV
Ga0164307_1023671833300012987SoilVGRVIAVLFAAAALSAGCGASRTAHGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLVIASNAKPVERPTASVWVAKSRTGKPFEHVTARLEPI
Ga0157378_1145855623300013297Miscanthus RhizosphereVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSRDGTPFARETAKLEPIGIPGRSPPAFGGVTR
Ga0157372_1060924213300013307Corn RhizosphereVVVIAAALLAGCGGSRSSSSGALVDLMKRPGPDVSITPGASEFVPGSVRYPFLVIRNDARPVERGAASVWLAAGRD
Ga0157380_1009619013300014326Switchgrass RhizosphereVGRVIVVLFAAAALSAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAKPVERSTASVWVAKSRTGKPFERVTARLEPIGV
Ga0157379_1096021013300014968Switchgrass RhizosphereVSRVIVVLFAAAALSAGCGASRSAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAKPVERSRASVWVAKSRTGKPFEHVTARL
Ga0157376_1139743613300014969Miscanthus RhizosphereVGRVIAVLLAAAVLSVSYRHPRTANGLTLDSILERPGPDIGVTAGASEFVPGEVRFPFLVIANNAKPVERPTASVWVAKSRTAEPFERASA
Ga0132257_10107391633300015373Arabidopsis RhizosphereVGRVIAVLLATAALTAGCGGSRASDDGTLKSLVDRPGPAVGITAGASQFVPGEVRYPFLIIRNDGKPANRK
Ga0184624_1025647033300018073Groundwater SedimentMAVLLATAALSAGCGGSRASGNGSLDAILKRPGPMVGITAGASQFLPGEVRYPFLVIRNDARPVERPAATVWVAK
Ga0184643_129053013300019255Groundwater SedimentVGRVLAVLLAAAALCAGCGGSRTSAGGTLDSILKRPGPDVALTAGASEFVPGDVRYPFLVIRNDAKPVERPAAAV
Ga0184644_151215613300019269Groundwater SedimentVGRLTAVVVLAAAFTAGCGGSSSSSPRTLDGILKRPGPDVSITAGASEFVPGSVRYPFLVIRNDARPV
Ga0184642_163103023300019279Groundwater SedimentLAVLLAAAALCAGCGGSRTSAGGTLDSILKRPGPDVALTAGASEFVPGDVRY
Ga0247679_102801413300024251SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSREDAP
Ga0247670_102320433300024283SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSRED
Ga0247687_100100813300024286SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSREDAPFARVTAKLEPIGV
Ga0247666_105641313300024323SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAKSREDAPFARVTAKLE
Ga0247678_101290333300024325SoilVGRVLAVLALTAVLTAGCGGSRASTGVTLGSILARPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPV
Ga0207653_1025400313300025885Corn, Switchgrass And Miscanthus RhizosphereVSRVIVVLFAAAALGAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGEVRFP
Ga0207642_1038609933300025899Miscanthus RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILKRPGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERPAADVWVATSRNGKPFRHVRAKLEPIGVPGRSEAA
Ga0207687_1050909333300025927Miscanthus RhizosphereVGRVIVVLFAAAALGAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPFLVIANNAKPVERSRASV
Ga0207708_1161739123300026075Corn, Switchgrass And Miscanthus RhizosphereVGRVIVVLFAAAALSAGCGASRTAHGLTLGSILKRPGPNIGVTAGASEFVPGKVRFPFLVIANNAKPVERATASVWVAKSRTAEPFERVSARLEPIGVPGRSGPAFGG
Ga0207702_1057233233300026078Corn RhizosphereVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPV
Ga0207702_1181183523300026078Corn RhizosphereVGRVVAVLFAVAALSAGCGGSSTAHGLTLDSILNRPGPDIGVTAGAGDFAPGSVRFPFLVIASNAKPVERPAADVWVAT
Ga0207648_1129924313300026089Miscanthus RhizosphereVGRVCAVLVLTAALTAGCGGSHASSGTTLDSILKRPGPNIGVTPGAGDLSVGLVRFPFLVIANNAKPVERDAATVWVARTRDGVPFAR
Ga0207683_1074732613300026121Miscanthus RhizosphereVGRVIAVLLAAAALSAGCGASRTAHGLTLGSILKRPGPDIGVTAGASEFVPGQVRFPTGT
Ga0207568_10562113300026763SoilVGRVIAVLLATAALTAGCGGSRASDDGTLKSLVDRPGPAVGITAGASQFVPGQVRYPFLVIRN
Ga0207591_10464413300026827SoilVGRVIAVLLATAALTAGCGGSRASDDGTLKSLVDRPGPAVGITAGASQFVPGQVRYPFLVIRND
Ga0209074_1011055413300027787Agricultural SoilVGRVLAVLVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVG
Ga0247684_102038733300028138SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLV
Ga0307311_1017779023300028716SoilVGRLTAVVVLAAAFTAGCGGSSSSSPRTLDGILKRPGPDVSITAGASEFVPGSVRYPFLVIRNDARPVERSTATVWVADGRDRAPFARVTARLEPIGIPG
Ga0307319_1029155413300028722SoilVVVLAAALSAGCGGSSSSSRGTLDELLKRPGPDVSITAGASEFVPGSLRYPFLVIRNDARPVERSTARVWLASGRDEAPFARVTARLE
Ga0307318_1005451613300028744SoilVGRLTAVVVLAAAFTAGCGGSSSSSPRTLDGILKRPGPDVSITAGASEFVPGSVRYPFLVIRNDARPVERSTATVWVA
Ga0307316_1002418113300028755SoilVGRVVAVLLAVAALSTGCGGSRIAHGLTLDSILQRPGPDIGVTAGAGEFVPGEVRFPFLVIANNAKPVERAAASVWVATSRSGRPFEHVSAKLEPIGV
Ga0307305_1003517813300028807SoilVGRVLAVLLAAAALCAGCGGSRTSAGGTLDSILKRPGPDVALTAGASEFVPGDVRYPFLVIRNDAKPVERSAAAVWVANGRADKPFAHATARLEPIGIPGRSAA
Ga0307302_1066090323300028814SoilLAVLLAAAALCAGCGGSRTSAGGTLDSILKRPGPDVALTAGASEFVPGDVRYPFLVIRNDAKPVERPAAAVWVAKGRADK
Ga0307296_1049878633300028819SoilVGRVVAVLIAVAALGTGCGSSRTAGGLSLGSILDRPGPNIGVTAGASEFVPGAVRYPFLVIDNDAKPVE
Ga0307312_1106883013300028828SoilVGRVVAVLLAAAVLSAGCGGSRTSAGTTLGSILKRPGPNVAVTAGASQFVPGEVRYPFLVIANDAKPVNRPAASVWIARSRDGKPFAHVAAALEPIGIP
Ga0307314_1013009013300028872SoilVGRVVAVLLAVAALSTGCGGSRIAHGLTLDSILQRPGPDIGVTAGAGEFVPGEVRFPFLVIANNAKPVERAAASVWVATSRSGRPFEHVSAK
Ga0307300_1018967323300028880SoilVGRLTAVVVLAAAFTAGCGGSSSSSPRTLDGILKRPGPDVSITAGASEFVPGSVRYPFLVIRNDARPVERSTARVLVASGRDEAPFARVTARLEPIGIPGRSS
Ga0102757_1001851133300030785SoilVGRVLAVLLAAAALSAGCGGSRTSSSGTLDSILKRPGPDVALTAGASEFVPGDVRYPFLVIRNDAKPVE
Ga0308203_103356513300030829SoilVGRVVAVLLAVAALSTGCGGSRIAHGLTLDSILQRPGPDIGVTAGAGEFVPGEVRFPFLVIANNAKPVERAAAS
Ga0308190_117219623300030993SoilVGRLTAVVVLAAAFTAGCGGSSSSSPRTLDGILKRPGPDVSITAGASEFVPGSVRYPFLVIRNDARPVERSTAT
Ga0308189_1001113313300031058SoilVGRLTAVVVLAAAFSAGCGGSSSSSPRTLDGILKRPGPDVSITAGASEFVPGSVRYPFLVIRNDARPVERSTATVWVA
Ga0308197_1030302713300031093SoilVVVLAAAFSAGCGGSSSPSARTLDGLLKRPGPDVSITAGASEFVPGPVRYPFLVIRNDARPVERSTASVWVAAGRDR
Ga0308181_104764013300031099SoilVVVVAAAFSAGCGGSSSSSARTLDGLLKRPGPDVSITAGASEFVPGSVRYPFLVIRNDARPVERSTASVWVSSGRDRAPFARVTARLEP
Ga0170824_12196613113300031231Forest SoilVLALTAALTAGCGGSRASTGVTLGEILNRPGPNIAVTAGASDFSVGDVRYPFLVIAENAKPVERPTATVWVAKSRDGTPFARVMAPLEPI
Ga0308194_1015232233300031421SoilVGRLTAVVVLAAAFTAGCGGSSSSSPRTLDGILKRPGPDVSITAGASEFVPGSVRYPFLVIRNDARPVERSTATVWVADGRDRA
Ga0170819_1050211023300031469Forest SoilVLALTAALTAGCGGSRASTGVTLGEILNRPGPNIAVTAGASDFSVGDVRYPFLVIAENAKPVERPAATVWVAKSRDG
Ga0307468_10032998333300031740Hardwood Forest SoilVGRVIAVLLAAAALSAGCGASRTAHGLTLGSILKRPGPDIGVTSGASEFVPGQVRFPFLVIANNAKPVERPTASVWVAKSRTGKPFEHVTARLEPIGVPGRSA
Ga0307409_10015331413300031995RhizosphereVARVIAVLFATAVLSAGCGGSRASGKASLGDLLKRPGPTVGITAGASEFVPRDVRYPFVVIRNDA
Ga0310890_1040997913300032075SoilVGRVLAVLALTAALTAGCGSRGSTGVTLSEILKRPGPNIAVTAGASDFAVGDVRYPFLVIAEDAKPVERPAATVWVAKSRDGTPFARE
Ga0307471_10143501613300032180Hardwood Forest SoilVGRVLAVLVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPV
Ga0314784_039073_1_2463300034663SoilVGRVLAVLALTAALTAGCGSRGSTGVTLSEILKRPGPNIAVTAGASDFAVGDVRYPFLVIAEDAKPVERPAATVWVAKSRDG
Ga0314793_144617_3_2033300034668SoilVGRVIAVLFAAAALSAGCGASRTAHGLTLGSILERPGPDVGVTAGASEFVPGEVRFPFLVIATNAKP
Ga0314795_064744_1_1743300034670SoilMGRVLAVLVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPF
Ga0314803_039999_2_1783300034678SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIGVTAGASEFVPGKVRFPFLVIANNAKP
Ga0373958_0007092_2_2143300034819Rhizosphere SoilVLTAALTAGCGGSRASTGLTLGSILKRPGPNIAVTAGASDFAVGDVRYPFLVIAENAKPVERPAATVWVAK


 ⦗Top⦘


© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.