NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome Family F075479

Metagenome Family F075479

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F075479
Family Type Metagenome
Number of Sequences 119
Average Sequence Length 65 residues
Representative Sequence MMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Number of Associated Samples 106
Number of Associated Scaffolds 119

Quality Assessment
Transcriptomic Evidence No
Most common taxonomic group Archaea
% of genes with valid RBS motifs 42.02 %
% of genes near scaffold ends (potentially truncated) 47.06 %
% of genes from short scaffolds (< 2000 bps) 83.19 %
Associated GOLD sequencing projects 93
AlphaFold2 3D model prediction No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Archaea (98.319 % of family members)
NCBI Taxonomy ID 2157
Taxonomy All Organisms → cellular organisms → Archaea

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(15.966 % of family members)
Environment Ontology (ENVO) Unclassified
(31.933 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(52.101 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 63.77%    β-sheet: 0.00%    Coil/Unstructured: 36.23%
Feature Viewer
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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 119 Family Scaffolds
PF00881Nitroreductase 3.36
PF00355Rieske 2.52
PF05168HEPN 1.68
PF00004AAA 0.84
PF00011HSP20 0.84
PF02776TPP_enzyme_N 0.84
PF13673Acetyltransf_10 0.84
PF01253SUI1 0.84
PF08327AHSA1 0.84
PF01661Macro 0.84
PF00353HemolysinCabind 0.84
PF00005ABC_tran 0.84
PF01243Putative_PNPOx 0.84

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 119 Family Scaffolds
COG1895HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 1.68
COG2250HEPN domain protein, predicted toxin of MNT-HEPN systemDefense mechanisms [V] 1.68
COG0023Translation initiation factor 1 (eIF-1/SUI1)Translation, ribosomal structure and biogenesis [J] 0.84
COG0071Small heat shock protein IbpA, HSP20 familyPosttranslational modification, protein turnover, chaperones [O] 0.84
COG2110O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domainTranslation, ribosomal structure and biogenesis [J] 0.84

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms100.00 %
UnclassifiedrootN/A0.00 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
2124908021|BSRL3_Contig_8013All Organisms → cellular organisms → Archaea716Open in IMG/M
2162886006|SwRhRL3b_contig_1588314All Organisms → cellular organisms → Archaea977Open in IMG/M
3300000858|JGI10213J12805_11443749All Organisms → cellular organisms → Bacteria1034Open in IMG/M
3300003349|JGI26129J50193_1010268All Organisms → cellular organisms → Archaea682Open in IMG/M
3300003398|JGI26130J50248_102259All Organisms → cellular organisms → Archaea585Open in IMG/M
3300003400|JGI26131J50246_100310All Organisms → cellular organisms → Archaea1996Open in IMG/M
3300003503|JGI26141J51220_1007987All Organisms → cellular organisms → Archaea679Open in IMG/M
3300003504|JGI26138J51218_107057All Organisms → cellular organisms → Archaea528Open in IMG/M
3300003987|Ga0055471_10005763All Organisms → cellular organisms → Archaea2428Open in IMG/M
3300003993|Ga0055468_10002197All Organisms → cellular organisms → Archaea2754Open in IMG/M
3300003999|Ga0055469_10004040All Organisms → cellular organisms → Archaea2510Open in IMG/M
3300004481|Ga0069718_13044183All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera790Open in IMG/M
3300005269|Ga0065706_1000240All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota4485Open in IMG/M
3300005289|Ga0065704_10006393All Organisms → cellular organisms → Archaea2764Open in IMG/M
3300005289|Ga0065704_10015533All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera1787Open in IMG/M
3300005294|Ga0065705_10014123All Organisms → cellular organisms → Archaea2013Open in IMG/M
3300005294|Ga0065705_10480385All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera796Open in IMG/M
3300005328|Ga0070676_10052520All Organisms → cellular organisms → Archaea2397Open in IMG/M
3300005328|Ga0070676_11164901All Organisms → cellular organisms → Archaea585Open in IMG/M
3300005336|Ga0070680_100032128All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → Nitrosopumilaceae → Nitrosarchaeum → Candidatus Nitrosarchaeum limnium → Candidatus Nitrosarchaeum limnium SFB14223Open in IMG/M
3300005337|Ga0070682_101302820All Organisms → cellular organisms → Archaea617Open in IMG/M
3300005339|Ga0070660_101363508All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera602Open in IMG/M
3300005341|Ga0070691_10428644All Organisms → cellular organisms → Archaea751Open in IMG/M
3300005347|Ga0070668_101791181All Organisms → cellular organisms → Archaea565Open in IMG/M
3300005353|Ga0070669_100586663All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera932Open in IMG/M
3300005441|Ga0070700_100127207All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera1715Open in IMG/M
3300005441|Ga0070700_101474147All Organisms → cellular organisms → Archaea577Open in IMG/M
3300005444|Ga0070694_101189300All Organisms → cellular organisms → Archaea638Open in IMG/M
3300005457|Ga0070662_100675550All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera872Open in IMG/M
3300005458|Ga0070681_11919956All Organisms → cellular organisms → Archaea520Open in IMG/M
3300005459|Ga0068867_101763044All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera581Open in IMG/M
3300005539|Ga0068853_100947118All Organisms → cellular organisms → Archaea828Open in IMG/M
3300005549|Ga0070704_100568547All Organisms → cellular organisms → Archaea993Open in IMG/M
3300005549|Ga0070704_101302887All Organisms → cellular organisms → Archaea665Open in IMG/M
3300005577|Ga0068857_102553129All Organisms → cellular organisms → Archaea502Open in IMG/M
3300005844|Ga0068862_101006239All Organisms → cellular organisms → Archaea824Open in IMG/M
3300006049|Ga0075417_10388611All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera689Open in IMG/M
3300006844|Ga0075428_100502406All Organisms → cellular organisms → Archaea1297Open in IMG/M
3300006845|Ga0075421_100163462All Organisms → cellular organisms → Archaea2777Open in IMG/M
3300006847|Ga0075431_100375946All Organisms → cellular organisms → Archaea1425Open in IMG/M
3300006876|Ga0079217_11037796All Organisms → cellular organisms → Archaea604Open in IMG/M
3300009081|Ga0105098_10001741All Organisms → cellular organisms → Archaea7804Open in IMG/M
3300009085|Ga0105103_10946800All Organisms → cellular organisms → Archaea507Open in IMG/M
3300009156|Ga0111538_11769415All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera778Open in IMG/M
3300009157|Ga0105092_10045292All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera → Candidatus Nitrososphaera evergladensis2354Open in IMG/M
3300009176|Ga0105242_11262264All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera761Open in IMG/M
3300012882|Ga0157304_1002570All Organisms → cellular organisms → Archaea1619Open in IMG/M
3300012885|Ga0157287_1002600All Organisms → cellular organisms → Archaea1603Open in IMG/M
3300012897|Ga0157285_10000897All Organisms → cellular organisms → Archaea4610Open in IMG/M
3300012901|Ga0157288_10228043All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera611Open in IMG/M
3300012912|Ga0157306_10022785All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera1362Open in IMG/M
3300012914|Ga0157297_10122141All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera812Open in IMG/M
3300013096|Ga0157307_1080258All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera662Open in IMG/M
3300013306|Ga0163162_13464364All Organisms → cellular organisms → Archaea502Open in IMG/M
3300015077|Ga0173483_10001372All Organisms → cellular organisms → Archaea7670Open in IMG/M
3300018027|Ga0184605_10334641All Organisms → cellular organisms → Archaea684Open in IMG/M
3300018028|Ga0184608_10196622All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera882Open in IMG/M
3300018466|Ga0190268_10130503All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrosopumilales → unclassified Nitrosopumilales → Nitrosopumilales archaeon1240Open in IMG/M
3300018466|Ga0190268_10293743All Organisms → cellular organisms → Archaea970Open in IMG/M
3300018469|Ga0190270_10845863All Organisms → cellular organisms → Archaea927Open in IMG/M
3300019361|Ga0173482_10006188All Organisms → cellular organisms → Archaea2852Open in IMG/M
3300019362|Ga0173479_10195166All Organisms → cellular organisms → Archaea849Open in IMG/M
3300019884|Ga0193741_1022224All Organisms → cellular organisms → Archaea1635Open in IMG/M
3300019884|Ga0193741_1110704All Organisms → cellular organisms → Archaea699Open in IMG/M
3300019997|Ga0193711_1005579All Organisms → cellular organisms → Archaea1579Open in IMG/M
3300020003|Ga0193739_1003211All Organisms → cellular organisms → Archaea4453Open in IMG/M
3300020009|Ga0193740_1000113All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae22886Open in IMG/M
3300020009|Ga0193740_1016296All Organisms → cellular organisms → Archaea1181Open in IMG/M
3300022737|Ga0247747_1006517All Organisms → cellular organisms → Archaea1139Open in IMG/M
3300022756|Ga0222622_10998207All Organisms → cellular organisms → Archaea615Open in IMG/M
3300022898|Ga0247745_1022383All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera910Open in IMG/M
3300022901|Ga0247788_1092963All Organisms → cellular organisms → Archaea591Open in IMG/M
3300023066|Ga0247793_1018067All Organisms → cellular organisms → Archaea1005Open in IMG/M
3300023067|Ga0247743_1062689All Organisms → cellular organisms → Archaea553Open in IMG/M
3300023266|Ga0247789_1001907All Organisms → cellular organisms → Archaea3157Open in IMG/M
3300025791|Ga0210115_1071403All Organisms → cellular organisms → Archaea722Open in IMG/M
3300025893|Ga0207682_10167648All Organisms → cellular organisms → Archaea998Open in IMG/M
3300025899|Ga0207642_11041349All Organisms → cellular organisms → Archaea528Open in IMG/M
3300025919|Ga0207657_10412689All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera1062Open in IMG/M
3300025933|Ga0207706_10213887All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera1689Open in IMG/M
3300025933|Ga0207706_10790038All Organisms → cellular organisms → Archaea807Open in IMG/M
3300025934|Ga0207686_11186730All Organisms → cellular organisms → Archaea624Open in IMG/M
3300025935|Ga0207709_10600191All Organisms → cellular organisms → Archaea871Open in IMG/M
3300025938|Ga0207704_10606890All Organisms → cellular organisms → Archaea896Open in IMG/M
3300025961|Ga0207712_11345792All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera639Open in IMG/M
3300025972|Ga0207668_10491651All Organisms → cellular organisms → Archaea1054Open in IMG/M
3300026075|Ga0207708_10856267All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera785Open in IMG/M
3300026075|Ga0207708_10932485All Organisms → cellular organisms → Archaea752Open in IMG/M
3300026089|Ga0207648_11562730All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera620Open in IMG/M
3300026116|Ga0207674_10393786All Organisms → cellular organisms → Archaea1339Open in IMG/M
3300026116|Ga0207674_10745769All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera945Open in IMG/M
3300026118|Ga0207675_101428288All Organisms → cellular organisms → Bacteria → FCB group713Open in IMG/M
3300026729|Ga0207500_102989All Organisms → cellular organisms → Archaea531Open in IMG/M
3300026793|Ga0207441_105657All Organisms → cellular organisms → Archaea546Open in IMG/M
3300026938|Ga0207610_103091All Organisms → cellular organisms → Archaea502Open in IMG/M
3300027424|Ga0209984_1039188All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera681Open in IMG/M
3300027442|Ga0207598_100210All Organisms → cellular organisms → Archaea2071Open in IMG/M
3300027462|Ga0210000_1028686All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera867Open in IMG/M
3300027691|Ga0209485_1052273All Organisms → cellular organisms → Archaea1052Open in IMG/M
3300027876|Ga0209974_10019542All Organisms → cellular organisms → Archaea2246Open in IMG/M
3300027880|Ga0209481_10174474All Organisms → cellular organisms → Archaea1068Open in IMG/M
3300027956|Ga0209820_1006242All Organisms → cellular organisms → Archaea2896Open in IMG/M
3300028381|Ga0268264_11394505All Organisms → cellular organisms → Archaea711Open in IMG/M
(restricted) 3300031150|Ga0255311_1144328All Organisms → cellular organisms → Archaea527Open in IMG/M
(restricted) 3300031248|Ga0255312_1046399All Organisms → cellular organisms → Archaea1039Open in IMG/M
3300031538|Ga0310888_10060508All Organisms → cellular organisms → Archaea1807Open in IMG/M
3300031547|Ga0310887_10073280All Organisms → cellular organisms → Archaea1617Open in IMG/M
3300031562|Ga0310886_10478986All Organisms → cellular organisms → Archaea747Open in IMG/M
3300031847|Ga0310907_10037027All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera1805Open in IMG/M
3300031854|Ga0310904_10303972All Organisms → cellular organisms → Archaea1011Open in IMG/M
3300031908|Ga0310900_10297059All Organisms → cellular organisms → Archaea1185Open in IMG/M
3300031940|Ga0310901_10032180All Organisms → cellular organisms → Archaea1611Open in IMG/M
3300031940|Ga0310901_10211068All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera778Open in IMG/M
3300031940|Ga0310901_10234027All Organisms → cellular organisms → Archaea746Open in IMG/M
3300031943|Ga0310885_10129251All Organisms → cellular organisms → Archaea1184Open in IMG/M
3300031944|Ga0310884_10177903All Organisms → cellular organisms → Archaea1119Open in IMG/M
3300032000|Ga0310903_10442085All Organisms → cellular organisms → Archaea669Open in IMG/M
3300032179|Ga0310889_10044247All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Nitrososphaeria → Nitrososphaerales → Nitrososphaeraceae → Nitrososphaera1709Open in IMG/M
3300033417|Ga0214471_10684568All Organisms → cellular organisms → Archaea807Open in IMG/M

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil15.97%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil10.92%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere6.72%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere6.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil5.04%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere5.04%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere4.20%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere4.20%
Freshwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment3.36%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands3.36%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil3.36%
Corn RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere3.36%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere3.36%
Corn RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere2.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere2.52%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere2.52%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere2.52%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment1.68%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil1.68%
Sandy SoilEnvironmental → Terrestrial → Soil → Sand → Unclassified → Sandy Soil1.68%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Switchgrass Rhizosphere1.68%
SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Sediment0.84%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil0.84%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.84%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.84%

Visualization
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Associated Samples

Note: Some of these datasets are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Taxon OIDSample NameHabitat TypeIMG/M Link
2124908021Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk SoilEnvironmentalOpen in IMG/M
2162886006Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3EnvironmentalOpen in IMG/M
3300000858Soil microbial communities from Great Prairies - Wisconsin Native Prairie soilEnvironmentalOpen in IMG/M
3300003349Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Endophyte Co-N S PMHost-AssociatedOpen in IMG/M
3300003398Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AMHost-AssociatedOpen in IMG/M
3300003400Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AMHost-AssociatedOpen in IMG/M
3300003503Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S AMHost-AssociatedOpen in IMG/M
3300003504Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AMHost-AssociatedOpen in IMG/M
3300003987Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2EnvironmentalOpen in IMG/M
3300003993Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailC_D2EnvironmentalOpen in IMG/M
3300003999Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleA_D2EnvironmentalOpen in IMG/M
3300004481Combined Assembly of Gp0112041, Gp0112042, Gp0112043EnvironmentalOpen in IMG/M
3300005269Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 Bulk SoilEnvironmentalOpen in IMG/M
3300005289Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2Host-AssociatedOpen in IMG/M
3300005294Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk SoilEnvironmentalOpen in IMG/M
3300005328Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaGHost-AssociatedOpen in IMG/M
3300005336Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaGEnvironmentalOpen in IMG/M
3300005337Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaGEnvironmentalOpen in IMG/M
3300005339Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaGHost-AssociatedOpen in IMG/M
3300005341Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaGEnvironmentalOpen in IMG/M
3300005347Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaGHost-AssociatedOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005441Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaGEnvironmentalOpen in IMG/M
3300005444Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaGEnvironmentalOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005458Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaGEnvironmentalOpen in IMG/M
3300005459Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2Host-AssociatedOpen in IMG/M
3300005539Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2Host-AssociatedOpen in IMG/M
3300005549Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaGEnvironmentalOpen in IMG/M
3300005577Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2Host-AssociatedOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006049Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1Host-AssociatedOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006845Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5Host-AssociatedOpen in IMG/M
3300006847Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300009081Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015EnvironmentalOpen in IMG/M
3300009085Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 10-12cm September2015EnvironmentalOpen in IMG/M
3300009156Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD1 (version 2)Host-AssociatedOpen in IMG/M
3300009157Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm March2015EnvironmentalOpen in IMG/M
3300009176Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaGHost-AssociatedOpen in IMG/M
3300012882Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2EnvironmentalOpen in IMG/M
3300012885Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1EnvironmentalOpen in IMG/M
3300012897Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S074-202C-1EnvironmentalOpen in IMG/M
3300012901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S119-311C-1EnvironmentalOpen in IMG/M
3300012912Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S163-409C-2EnvironmentalOpen in IMG/M
3300012914Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S028-104C-2EnvironmentalOpen in IMG/M
3300013096Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2EnvironmentalOpen in IMG/M
3300013306Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaGHost-AssociatedOpen in IMG/M
3300015077Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)EnvironmentalOpen in IMG/M
3300018027Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM0_30_coexEnvironmentalOpen in IMG/M
3300018028Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coexEnvironmentalOpen in IMG/M
3300018466Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 TEnvironmentalOpen in IMG/M
3300018469Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 TEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019362Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)EnvironmentalOpen in IMG/M
3300019884Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s2EnvironmentalOpen in IMG/M
3300019997Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H3m2EnvironmentalOpen in IMG/M
3300020003Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a2EnvironmentalOpen in IMG/M
3300020009Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2s1EnvironmentalOpen in IMG/M
3300022737Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S094-311B-5EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300022898Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S109-311C-5EnvironmentalOpen in IMG/M
3300022901Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S156-409C-4EnvironmentalOpen in IMG/M
3300023066Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6EnvironmentalOpen in IMG/M
3300023067Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S221-509R-5EnvironmentalOpen in IMG/M
3300023266Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S220-509R-4EnvironmentalOpen in IMG/M
3300025791Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleB_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300025893Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025899Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025919Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025933Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025934Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025935Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025938Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300025961Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026075Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes)EnvironmentalOpen in IMG/M
3300026089Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026116Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026118Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300026729Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G09A3-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026793Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G06A3a-12 (SPAdes)EnvironmentalOpen in IMG/M
3300026938Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-G10A4-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027424Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027442Soil microbial communities from Kellog Biological Station, Michigan, USA - Nitrogen cycling UWRJ-G07K5-12 (SPAdes)EnvironmentalOpen in IMG/M
3300027462Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027691Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027876Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes)Host-AssociatedOpen in IMG/M
3300027880Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)Host-AssociatedOpen in IMG/M
3300027956Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (1) Depth 19-21cm May2015 (SPAdes)EnvironmentalOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300031150 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH4_T0_E4EnvironmentalOpen in IMG/M
3300031248 (restricted)Sandy soil microbial communities from University of British Columbia, Vancouver, Canada - EtOH5_T0_E5EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031562Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3EnvironmentalOpen in IMG/M
3300031847Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D4EnvironmentalOpen in IMG/M
3300031854Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1EnvironmentalOpen in IMG/M
3300031908Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D1EnvironmentalOpen in IMG/M
3300031940Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C24D2EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300031944Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1EnvironmentalOpen in IMG/M
3300032000Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D3EnvironmentalOpen in IMG/M
3300032179Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D2EnvironmentalOpen in IMG/M
3300033417Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Note: Some of these sequences are restricted, as per the data usage policy of the Joint Genome Institute (JGI). Utilizing any of their features below requires obtaining a license from the datasets' corresponding author(s).

Protein ID Sample Taxon ID Habitat Sequence
BSRL3_000168802124908021Switchgrass RhizosphereMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA
SwRhRL3b_0188.000010302162886006Switchgrass RhizosphereMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINGLGHELGALSSQADDDKIKTGLIDMMNRLA
JGI10213J12805_1144374923300000858SoilLFPMMVDLNSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN*
JGI26129J50193_101026813300003349Arabidopsis Thaliana RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSXGHELGTLSSQADDDKIKTGLIDMMNRLN*
JGI26130J50248_10225913300003398Arabidopsis Thaliana RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSXGHXLGTLSSQADDDKIKTGLID
JGI26131J50246_10031023300003400Arabidopsis Thaliana RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLX*
JGI26141J51220_100798723300003503Arabidopsis Thaliana RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
JGI26138J51218_10705713300003504Arabidopsis Thaliana RhizosphereEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSXGHXLGTLSSQADDDKIKTGLIDMMNRLN*
Ga0055471_1000576363300003987Natural And Restored WetlandsMMVDINSEYARGMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIRTGLIDMMNRLN*
Ga0055468_1000219723300003993Natural And Restored WetlandsMMVDINSEYARGMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN*
Ga0055469_1000404013300003999Natural And Restored WetlandsMMVDINSEYARGMIRDFIQIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN*
Ga0069718_1304418323300004481SedimentMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0065706_100024023300005269Switchgrass RhizosphereMXIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0065704_1000639343300005289Switchgrass RhizosphereMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINXLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0065704_1001553323300005289Switchgrass RhizosphereMXIDINSEYARAMIRDFIXIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0065705_1001412313300005294Switchgrass RhizosphereMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINGLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0065705_1048038523300005294Switchgrass RhizosphereMLIDINSEYARAMIRDFINIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0070676_1005252033300005328Miscanthus RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0070676_1116490123300005328Miscanthus RhizosphereMIVDINSEYARAMIRDFIKIQKDILKLPNLTIKQKVDINSLGHELGTLSSQADDAKIKTGLIDMMNRLN*
Ga0070680_10003212813300005336Corn RhizosphereMIVDINSEYARAMIRDFIKIQKDILKLPNLTIKQKVDINRLGHELGTLSSQADDAKIKTGLIDMMNRLN*
Ga0070682_10130282023300005337Corn RhizosphereMIVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0070660_10136350823300005339Corn RhizosphereLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0070691_1042864413300005341Corn, Switchgrass And Miscanthus RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLA*
Ga0070668_10179118123300005347Switchgrass RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0070669_10058666313300005353Switchgrass RhizosphereMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0070700_10012720713300005441Corn, Switchgrass And Miscanthus RhizosphereIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0070700_10147414713300005441Corn, Switchgrass And Miscanthus RhizosphereEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0070694_10118930013300005444Corn, Switchgrass And Miscanthus RhizosphereMLIDINSEYARAMVRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0070662_10067555013300005457Corn RhizosphereEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0070681_1191995613300005458Corn RhizosphereIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0068867_10176304423300005459Miscanthus RhizosphereDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0068853_10094711823300005539Corn RhizosphereMIVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLA*
Ga0070704_10056854733300005549Corn, Switchgrass And Miscanthus RhizosphereMLVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0070704_10130288713300005549Corn, Switchgrass And Miscanthus RhizosphereLSFPMIVDINSEYARAMIRDFIKIQKDILKLPNLTIKQKVDINRLGHELGTLSSQADDAKIKTGLIDMMNRLN*
Ga0068857_10255312923300005577Corn RhizosphereFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0068862_10100623923300005844Switchgrass RhizosphereMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0075417_1038861113300006049Populus RhizosphereMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0075428_10050240643300006844Populus RhizosphereDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDISSLGRELGALSSQADDDKIKTGLIDMMNRLN*
Ga0075421_10016346223300006845Populus RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDISSLGRELGALSSQADDDKIKTGLIDMMNRLN*
Ga0075431_10037594633300006847Populus RhizosphereMMIDINSEYAREMIRDFIKIQKDIMGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN*
Ga0079217_1103779613300006876Agricultural SoilMMVDIISEYARAMIRDFIKIQMDILGLPNLTTKQKDDINSLGHELGTLSSQADDDK*
Ga0105098_1000174193300009081Freshwater SedimentMMVDINSEYTRAMIRDFIKIQKDILGLPNLTTKQKDDINSLGYELGALSSQADDDKIKTGLIDMMNRLN*
Ga0105103_1094680013300009085Freshwater SedimentMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDISSLGRELGALSSQADDDKIKTGLID
Ga0111538_1176941513300009156Populus RhizospherePMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0105092_1004529213300009157Freshwater SedimentRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIRTGLIDMMNRLN*
Ga0105242_1126226423300009176Miscanthus RhizosphereAMISDFVKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0157304_100257033300012882SoilSFPMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0157287_100260033300012885SoilMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0157285_1000089713300012897SoilMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN*
Ga0157288_1022804313300012901SoilQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0157306_1002278523300012912SoilEPYGSCLFPMLIDINSEYARAMIRDFIEIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0157297_1012214113300012914SoilRAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0157307_108025823300013096SoilDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLA*
Ga0163162_1346436413300013306Switchgrass RhizosphereMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLA*
Ga0173483_10001372133300015077SoilDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA*
Ga0184605_1033464113300018027Groundwater SedimentMLVDINSEYARAMIRDFIKIQKDILALPNLTTKQKDDINSLGHELGALSSQADNDKIKTGLIDMMNRLA
Ga0184608_1019662213300018028Groundwater SedimentMLVDINSEYARAMIRDFIKIQKDILALPNLTIKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLG
Ga0190268_1013050313300018466SoilARGMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN
Ga0190268_1029374313300018466SoilMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGYELGTLSSQADDDKIKLA
Ga0190270_1084586323300018469SoilMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLN
Ga0173482_1000618843300019361SoilMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0173479_1019516623300019362SoilMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0193741_102222413300019884SoilMMVDINSEYARGMIRDFIKIQKDILGLPNLTTKQKDDINSLGHQLGALSSQADDDKIKTALIDM
Ga0193741_111070413300019884SoilDLIKIQKGILGLPNLTTKQKDDINSLGHQLGALSSQADDDKIKTALIDMMNGLN
Ga0193711_100557913300019997SoilMLVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALNSQANDDEIKTGLIDMMNRLN
Ga0193739_100321113300020003SoilMLVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDAINSLGHELGALSSQADDDKIKTGLID
Ga0193740_100011343300020009SoilMLVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDAINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0193740_101629613300020009SoilMMVDINSEYARGMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN
Ga0247747_100651723300022737SoilMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0222622_1099820713300022756Groundwater SedimentMLVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALNSQANDDEIKTGLIDMMNRLA
Ga0247745_102238333300022898SoilIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0247788_109296323300022901SoilYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRL
Ga0247793_101806713300023066SoilMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLI
Ga0247743_106268913300023067SoilMIVDINSEYARAMIRDFIKIQKDILKLPNLTIKQKVDINRLGHELGTLSSQADDAKIKTGLIDMMNRLN
Ga0247789_100190753300023266SoilFPMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0210115_107140323300025791Natural And Restored WetlandsIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN
Ga0207682_1016764813300025893Miscanthus RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDAKIKTGLIDMMNRLN
Ga0207642_1104134913300025899Miscanthus RhizosphereMIVDINSEYARAMIRDFIKIQKDILKLPNLTIKQKVDINSLGHELGTLSSQADDAKIKTGLIDMMNRLN
Ga0207657_1041268923300025919Corn RhizosphereMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0207706_1021388723300025933Corn RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0207706_1079003813300025933Corn RhizosphereIKKQNDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0207686_1118673013300025934Miscanthus RhizosphereMIVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0207709_1060019113300025935Miscanthus RhizosphereMIVDINSEYARAMIRDFIKIQKDILKLPNLTIKQKVDINRLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0207704_1060689013300025938Miscanthus RhizosphereMLIDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDAKIKTGLIDMMNRLN
Ga0207712_1134579213300025961Switchgrass RhizosphereMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0207668_1049165123300025972Switchgrass RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLA
Ga0207708_1085626733300026075Corn, Switchgrass And Miscanthus RhizosphereMLIDINSEYARAMIRDFINIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0207708_1093248523300026075Corn, Switchgrass And Miscanthus RhizosphereNSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0207648_1156273013300026089Miscanthus RhizosphereAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0207674_1039378623300026116Corn RhizosphereMLIDINSEYARAMVRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0207674_1074576913300026116Corn RhizosphereSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0207675_10142828823300026118Switchgrass RhizosphereMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLN
Ga0207500_10298923300026729SoilEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0207441_10565713300026793SoilDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN
Ga0207610_10309123300026938SoilMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGL
Ga0209984_103918813300027424Arabidopsis Thaliana RhizosphereFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0207598_10021013300027442SoilRAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0210000_102868613300027462Arabidopsis Thaliana RhizosphereRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0209485_105227313300027691Agricultural SoilMMVDIISKYARAMIRDFIKIQMDILGLPNLTTKQKDDINSLGHELGTLSSQADDDK
Ga0209974_1001954253300027876Arabidopsis Thaliana RhizosphereVRDFIKIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0209481_1017447413300027880Populus RhizosphereMMIDINSEYAREMIRDFIKIQKDIMGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLN
Ga0209820_100624253300027956Freshwater SedimentMMVDINSEYTRAMIRDFIKIQKDILGLPNLTTKQKDDINSLGYELGALSSQADDDKIKTGLIDMMNRLN
Ga0268264_1139450523300028381Switchgrass RhizosphereSCSFPMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLN
(restricted) Ga0255311_114432813300031150Sandy SoilMMVDINSEYARAMIRDFIEIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKI
(restricted) Ga0255312_104639923300031248Sandy SoilMMVDINSEYARAMIRDFIEIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTG
Ga0310888_1006050813300031538SoilINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310887_1007328033300031547SoilMLVDINSEYARAMIRDFIIIQKDILGLPNLTTKQKDEINSLGQELGALSSQADDDKIKTGLIDMMNRLA
Ga0310886_1047898623300031562SoilMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKEDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310907_1003702733300031847SoilMLIDINSEYARAMIRDFIEIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0310904_1030397223300031854SoilDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310900_1029705913300031908SoilSCSFPMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310901_1003218033300031940SoilNGYKEPYSSCSFPMMVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310901_1021106833300031940SoilKEPYDSCLFPMLIDINSEYARAMIRDFIEIQKDILGLPNLTTKQKDDINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0310901_1023402713300031940SoilRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310885_1012925113300031943SoilVDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310884_1017790323300031944SoilIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310903_1044208523300032000SoilDINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN
Ga0310889_1004424713300032179SoilEPYGSCLFPMLVDINSEYARAMIRDFIIIQKDILGLPNLTTKQKDEINSLGHELGALSSQADDDKIKTGLIDMMNRLA
Ga0214471_1068456823300033417SoilMMADINSEYARAMIRDFIKIQKDILGLPNLTTKQKDDINSLGHELGTLSSQADDDKIKTGLIDMMNRLN

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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