Metagenome Family F075496

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075496
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	63 residues
Representative Sequence	MENTFQSKKNLVWFPGKCFPFILGGKHFLEVVKNLEMSYYLLIILNLVLKLLIAIYILF
Number of Associated Samples	20
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	0.00 %
% of genes near scaffold ends (potentially truncated)	0.00 %
% of genes from short scaffolds (< 2000 bps)	0.00 %
Associated GOLD sequencing projects	20
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.45

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (96.610 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza (76.271 % of family members)
Environment Ontology (ENVO)	Unclassified (100.000 % of family members)
Earth Microbiome Project Ontology (EMPO)	Unclassified (86.441 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Transmembrane (alpha-helical)	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 60.92% β-sheet: 0.00% Coil/Unstructured: 39.08%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.45
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.45
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF02992	Transposase_21	1.69
PF00806	PUF	1.69
PF07727	RVT_2	1.69
PF04987	PigN	0.85
PF03479	PCC	0.85
PF00332	Glyco_hydro_17	0.85
PF00862	Sucrose_synth	0.85
PF01423	LSM	0.85
PF13952	DUF4216	0.85
PF08787	Alginate_lyase2	0.85
PF00389	2-Hacid_dh	0.85
PF07724	AAA_2	0.85
PF04827	Plant_tran	0.85
PF00271	Helicase_C	0.85
PF01061	ABC2_membrane	0.85
PF00305	Lipoxygenase	0.85
PF01762	Galactosyl_T	0.85
PF00685	Sulfotransfer_1	0.85
PF14223	Retrotran_gag_2	0.85
PF07714	PK_Tyr_Ser-Thr	0.85
PF13960	DUF4218	0.85
PF01545	Cation_efflux	0.85
PF07885	Ion_trans_2	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.39
COG0053	Divalent metal cation (Fe/Co/Zn/Cd) efflux pump	Inorganic ion transport and metabolism [P]	0.85
COG1230	Co/Zn/Cd efflux system component	Inorganic ion transport and metabolism [P]	0.85
COG1661	Predicted DNA-binding protein with PD1-like DNA-binding motif, PPC/DUF296 domain	General function prediction only [R]	0.85
COG3965	Predicted Co/Zn/Cd cation transporter, cation efflux family	Inorganic ion transport and metabolism [P]	0.85
COG5309	Exo-beta-1,3-glucanase, GH17 family	Carbohydrate transport and metabolism [G]	0.85

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
All Organisms	root	All Organisms	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
cellular organisms	root	All Organisms → cellular organisms	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Eukaryota	superkingdom	All Organisms → cellular organisms → Eukaryota	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Viridiplantae	kingdom	All Organisms → cellular organisms → Eukaryota → Viridiplantae	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Streptophyta	phylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Streptophytina	subphylum	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Embryophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Tracheophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Euphyllophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Spermatophyta	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Magnoliopsida	class	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	3.39 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Mesangiospermae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
eudicotyledons	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Gunneridae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Pentapetalae	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
rosids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
fabids	clade	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Malpighiales	order	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Salicaceae	family	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Saliceae	tribe	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae	2.54 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Populus	genus	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus	1.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	96.61 %
Populus trichocarpa	species	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa	1.69 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300031507\|Ga0307509_10009839	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa	11835	Open in IMG/M
3300031616\|Ga0307508_10011186	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae → Populus → Populus trichocarpa	8209	Open in IMG/M
3300032390\|Ga0325404_1001032	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida	29004	Open in IMG/M
3300032740\|Ga0325411_1000917	All Organisms → cellular organisms → Eukaryota → Viridiplantae → Streptophyta → Streptophytina → Embryophyta → Tracheophyta → Euphyllophyta → Spermatophyta → Magnoliopsida → Mesangiospermae → eudicotyledons → Gunneridae → Pentapetalae → rosids → fabids → Malpighiales → Salicaceae → Saliceae	31941	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	100.00%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	100.00%

Habitat	Taxonomy	Distribution
Roots	Host-Associated → Plants → Roots	76.27%
Wood	Host-Associated → Plants → Wood	19.49%
Phylloplane	Host-Associated → Plants → Phylloplane	4.24%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified	76.27%
Unclassified	Host-Associated → Plants → Wood → Unclassified	19.49%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.24%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Roots → Unclassified → Unclassified	76.27%
Unclassified	Host-Associated → Plants → Wood → Unclassified → Unclassified	19.49%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.24%

Habitat	Taxonomy	Distribution
Ectomycorrhiza	Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza	76.27%
Xylem	Host-Associated → Plants → Wood → Unclassified → Unclassified → Xylem	19.49%
Leaf	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf	4.24%

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300028786	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM	Host-Associated	Open in IMG/M
3300028794	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM	Host-Associated	Open in IMG/M
3300030521	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM	Host-Associated	Open in IMG/M
3300030522	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM	Host-Associated	Open in IMG/M
3300031456	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM	Host-Associated	Open in IMG/M
3300031507	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM	Host-Associated	Open in IMG/M
3300031616	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM	Host-Associated	Open in IMG/M
3300031649	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM	Host-Associated	Open in IMG/M
3300031730	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM	Host-Associated	Open in IMG/M
3300031838	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 25_EM	Host-Associated	Open in IMG/M
3300032354	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R4	Host-Associated	Open in IMG/M
3300032355	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdKOR-R2	Host-Associated	Open in IMG/M
3300032389	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R2	Host-Associated	Open in IMG/M
3300032390	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-Control-R1	Host-Associated	Open in IMG/M
3300032735	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R3	Host-Associated	Open in IMG/M
3300032740	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R4	Host-Associated	Open in IMG/M
3300033179	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM	Host-Associated	Open in IMG/M
3300033180	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM	Host-Associated	Open in IMG/M
3300034389	Populus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4	Host-Associated	Open in IMG/M
3300034901	Populus deltoides microbial communities from Bellville, Georgia, United States - Xylem-PdIQD-R2	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0307517_1000153023	3300028786	Ectomycorrhiza	MENTFQSKENLAWFSEKCFPFILSGKHFPEIMKNLEMSYYMLIISNLVLKLLIDIYFCFEYLFFNFIH
Ga0307517_1000998110	3300028786	Ectomycorrhiza	MENTFRSKENLAWFSEKYFLFILDGKHFPEVMKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307517_100492351	3300028786	Ectomycorrhiza	MKNIFWSTENTFQSKKNLAWFLGKCFPFILDGKHFLKVVKNLEMSYYLLIISNIVLKLLIAIYILF
Ga0307517_100635583	3300028786	Ectomycorrhiza	MENTFQLKKNLAWFPRKCFPFILGGEHFPEVIKKLGISYYLLIISNLVLKLLIAIYFVLIIF
Ga0307517_100754043	3300028786	Ectomycorrhiza	LLLEKLQKKKHFQSKKNLAWFSGKCFPFILSGKHFTEIVKNLEMFFYLLIISNLVLKLL
Ga0307517_101024471	3300028786	Ectomycorrhiza	YVYLLLEKFANEKYKNTFQSKKNLAWFPGKYFPFILNKKYFPEIVKNLEMSYYLLVISNLVLKLLIAIYILF
Ga0307517_101819671	3300028786	Ectomycorrhiza	MKNTFQSKKNLAWFSGKCVPSILGGKLFPKIVKNLEMSYYLLIISNLILKLLIAIYILL
Ga0307517_101824591	3300028786	Ectomycorrhiza	MENTFQSKKNLTWFLEKYFPFILSGKYFSEVVKSLEMSCYLLIISNLILKLLIVIYFVLNFFFQFH
Ga0307517_102237921	3300028786	Ectomycorrhiza	MKNTFQSKKNLTWFSGKCFPFILGGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYIYIYIYIYI
Ga0307517_102657211	3300028786	Ectomycorrhiza	MKNIFQLKKNLVWLLKKYFPSILEGKHFPEIVKNIKISYYLLIIINLILKLLIAIYFILNFFCSTHPLKFDLI
Ga0307517_102781761	3300028786	Ectomycorrhiza	MENTFQSKENLVWFPGKYFPFILGRKHFLEVVKNLEISCYLLIISNLILKLLIAMYFVFNHFF
Ga0307515_100089471	3300028794	Ectomycorrhiza	MKNTFWSKKNLAWFLEKCFSFILGGKHFLEVVKKSEISCYLLIILSLVLNIFIYIF
Ga0307515_100355681	3300028794	Ectomycorrhiza	MKNTFQLKKNLTWFSGKCFPFILSGKQFPEVMKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307515_100575743	3300028794	Ectomycorrhiza	MKNTFQLKKNLAWFSEKCFPFILDGKHFSKVVKNLEISYYLLIITNLVLELLIAIYFVLNLFFSISPP
Ga0307515_101457261	3300028794	Ectomycorrhiza	MENTFRSTENTLQSKKNLAWFSGKCFHFILEGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILFFNFIP
Ga0307515_102301181	3300028794	Ectomycorrhiza	MKNTFQSKKNLAWFPGKCFSGKFDGKHFPEVVKNLEMSYYLLIILNLILKLLIVKYILF
Ga0307511_1000608712	3300030521	Ectomycorrhiza	MKNTFRSTENTLQSKKNLAWFSGKCFHFILEGKHFPEVVKKLEMSYYLLIISNLVLKLLITIYILFFNFIP
Ga0307511_100207586	3300030521	Ectomycorrhiza	MKNTLQLIKNLTLFPEKCFFLIFDGKHFVEVVKNLEISYYLLIISNLILKLLIAIYFV
Ga0307511_102945141	3300030521	Ectomycorrhiza	MKNIFQLKKNLVWLLKKYFPSILEGKHFPEIVKNIEISYYLLIIINLILKLLIAIYFILNFFCSTHPLEFDLI
Ga0307511_103047761	3300030521	Ectomycorrhiza	MEYTFRSTKNIFQSNENLAWFSGKCFPFIMDGKHFPEVVKNLEISYYLLIISNLVLKLL
Ga0307511_104206291	3300030521	Ectomycorrhiza	STENIFQSKKNLAWFARKCFPFILGEKHFPEVVKKLEILHYLLIIINLILKLLIAIFFVLNLFFFNFTS
Ga0307512_1001753712	3300030522	Ectomycorrhiza	MKNTFQSRKNLAWFLEKCFPFILGGKHFSKIVKILKISYYLLIITNLALKLFI
Ga0307512_100723285	3300030522	Ectomycorrhiza	MKNTFQLKKNLAWFLEKYFSFILGGKHFLKVVKNLEMLYYLLIISNLVLKLLITIYIYIYIIFNIC
Ga0307512_100895361	3300030522	Ectomycorrhiza	MENTFQSKENLAWFLEKYFPFILDGNRISEVVKNLEISYYLMIVKNLILKLLIAIYFALNLFFLNFTP
Ga0307512_101138313	3300030522	Ectomycorrhiza	MENTFQSKENLAWFSGKCFPFILGGKHFLEIVKNLEMPYYMLIISNLVLKLLIAIYFCFEYLFFNFIP
Ga0307512_101696032	3300030522	Ectomycorrhiza	KLSWFSGKYFPFILGEKHVLEIVENPKISFYLLIISSLVPNLLIAIYFVLNIFFFNFIP
Ga0307512_102717082	3300030522	Ectomycorrhiza	MKNTFQSTENIFQSKKNLAWFLEKYFPFILDGKHFLKVVKKLEMLYYLMIISNLVLKLLIAMYILF
Ga0307512_104235581	3300030522	Ectomycorrhiza	MENTFRSTENTLQSKKNLAWFSGKCFHFILEEKHFPEVVKKLEMSYYLLIISNLVLKLLIAIYILFFNFIP
Ga0307513_1000360724	3300031456	Ectomycorrhiza	MENIFRLTKNTLQSKKNLAWFSEKCFHFILEGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILFFNFIP
Ga0307513_1000483819	3300031456	Ectomycorrhiza	MENTFQSKENLAWFLEKYFPFILDGNRISEVVKNLEISYYLMIVKNLILKLLIAIYFALNLFFFKFHPLEFDLI
Ga0307513_100486032	3300031456	Ectomycorrhiza	MENTFQLKKNLAWFPRKCFPFILGGEHFPEVIKKLGISYYLLIISNLVLKLLIAIYFVLINF
Ga0307513_100748471	3300031456	Ectomycorrhiza	MKNTFRLMKNTFQSKKNLAWFSGKCVPSILGGKLFPEIVKNLEMSYYLLIISNLILKLLIAIYILL
Ga0307513_102003982	3300031456	Ectomycorrhiza	MKNTFRSMKNIFRSKKNLAWFPRKCFPFILGEKHFPEVVKNLEMSYYLLIISNLILKILIAIYILF
Ga0307513_107093481	3300031456	Ectomycorrhiza	NTFRSKENLAWFSGKCFPFILGGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYILF
Ga0307509_100098392	3300031507	Ectomycorrhiza	MKNIFQLKKNLVWLLKKYFPSILKGKHFTEIVKNIKISYYLLIIINLILKLLIAIYFILNFFCSTHPLKFDLI
Ga0307509_100341931	3300031507	Ectomycorrhiza	MENTFHSKENLAWFSGKYFPFILGGKHFPEIMKNLEMSYYMLIISNLVLKLLIAIYFCFEYLFFNFIP
Ga0307509_100451165	3300031507	Ectomycorrhiza	MKNTFQSKKNLAWFSGKYFPFILDGKHFLQIVKNLEISYYLLIISNLILKLLIAICILF
Ga0307509_101184801	3300031507	Ectomycorrhiza	MKNTFQLIKNLTLFPEKCFFLIFDGKHFVEVVKNLEISYYLLIISNLILKLLIAIYFV
Ga0307509_101209301	3300031507	Ectomycorrhiza	MKNNFQSKKKLSWFSGKYFPFILGEKHFLEIVENPKISFYLLIISSLVLNLLIAIYFVLNIFFFNFIP
Ga0307509_101426101	3300031507	Ectomycorrhiza	MENTFRSTENTFQSKKNLAWFPGKCFPFILGGKHFPEVVKNLEISYYLLIISNLVLKL
Ga0307509_103598101	3300031507	Ectomycorrhiza	MKNTFQSKKNLAWFSGKCFPSILGGKLFPEIVKNLEMSYYLLIISNLILKLLIAIYIFL
Ga0307509_109476061	3300031507	Ectomycorrhiza	MENTFQSKENLAWFLEKYFPFILDGNRISEVVKNLEISYYLMIVTNLILKLLIAIYFALNLFFFNFTP
Ga0307509_109997891	3300031507	Ectomycorrhiza	NLALFSGKCFSFILGEKHFPEVVKNFEISYYLLIMSNLILKLLIAIYFV
Ga0307508_100111864	3300031616	Ectomycorrhiza	MKNTFRLMKNTFQSKKNLTWFSGKCVPSILGGKLFPEIVKNLEMSYYLLIISNLILKLLIAIYILL
Ga0307508_100135731	3300031616	Ectomycorrhiza	ENIFQSKENLAWFPGKCFPFILSGKHFPEVVKNLEISYYLLIISNLILKLLIAIYIFCFEYIFFNFIP
Ga0307508_100516297	3300031616	Ectomycorrhiza	MENTFQSKKNLTWFLEKYLPFILSGKYFSEVVKSLEMSCYLLIISNLILKLLIVIYFVLN
Ga0307508_102118001	3300031616	Ectomycorrhiza	MENTLQSTENLAWFPGKCFPFILGGKHFPEVMKNLEMSYYLLIISNLVFKLLIAMYIL
Ga0307508_102515301	3300031616	Ectomycorrhiza	ENLAWFSGKYFPFILGGKHFPEVVKNLEISYYLLIITNLVIKLLIAIYFVLNLFFFNFNP
Ga0307508_102535071	3300031616	Ectomycorrhiza	ENTFQSKENLAWFLEKYFPFILDGNRISEVVKNLEISYYLMIVTNLILKLLIAIYFALNLFF
Ga0307508_104219061	3300031616	Ectomycorrhiza	MENTFQSKENLVWFPGKYFPFILGGKHFLEVVKNLEISCYLLIISNLILKLLIAMYFVFNHFFISSLRI
Ga0307508_106238331	3300031616	Ectomycorrhiza	MKNTFQSKKNLAWFPGKCFPFILGGKHFPEVVKKLEMSYYLLIISNLVLKLLIAIYIYIYIY
Ga0307508_107247481	3300031616	Ectomycorrhiza	MKNTFQSRKNLAWFLEKYFPFILGGKHFSKIVKILKISYYLLIITNLALKLFIAIYFILNLFF
Ga0307508_108790141	3300031616	Ectomycorrhiza	SMENTFQLKKNLAWFPGKCFLFILGGKHFSKVVKILEISYYLLVITNLVFKLLIAIYFVLNLFFFNFTS
Ga0307514_100097301	3300031649	Ectomycorrhiza	GQRKTFLSQKNLTWFSGKCFSSILDEKYFLKVVKNLEMSYYLLIISNLILKLLIAIYILF
Ga0307514_100904131	3300031649	Ectomycorrhiza	MKNTFQSKKNLTWFLEKYFSFILSGKYFSEVVKSLEMSCYLLIISNLILKLLIVIYFVLNFFFQFHPLEFDLI
Ga0307514_101615321	3300031649	Ectomycorrhiza	MKNTFQSTENIFQSKKNLAWFLEKYFPFILDGKHFLKVVKKLEMLYYLMIISNLVLKFLIAMYILF
Ga0307514_102740631	3300031649	Ectomycorrhiza	MKNTFRLTENTFQSKKKLAWFPGKCFPFILGGKHFPEIVKNLEMSYYLLIISNLTLKLLIAIYILF
Ga0307514_102783881	3300031649	Ectomycorrhiza	MKNTFQSKKNLAWFSGKCVPSILGGKLFPEIVKNLEMSYYLLIISNLILKLLIAIYILL
Ga0307514_102821861	3300031649	Ectomycorrhiza	MKNTFQSKKNLAWFSRKCFPFILGGKHFSEVMKNLKISCYLPIISDLVLKLLIAIYF
Ga0307514_104484651	3300031649	Ectomycorrhiza	MKNIFWSIENTFQSKKNLAWFSGKCFPFILDGKHFLEVVKNLEMSYYLLIISNIVLKLLIAIYILF
Ga0307516_102575752	3300031730	Ectomycorrhiza	MENTFQSKENLAWFLGKCFPFILDGKHFPEVVKNLEMSYYLLIILNLVLKLLI
Ga0307516_103907801	3300031730	Ectomycorrhiza	MKNTFWSTKNTFQLNKNLAWFPEKCFPFILDGKHFPEVMKNLEMSYYLFIILNLILKLLIAIYILF
Ga0307516_104755562	3300031730	Ectomycorrhiza	MKNTFRLTENTFQSKKNLAWFPGKCFPFILGGKHFPEIVKNLEMSYYLLIISNLTLKLLIAIYILF
Ga0307516_104977441	3300031730	Ectomycorrhiza	FQSKENLVWFPGKCFPFILGGKHFPVVVKNLEISYYLMIISNLVLKLLIAVYICFEYLFFNFIP
Ga0307516_106075351	3300031730	Ectomycorrhiza	MKNTFQSKKNLIWFSEKCFPFILSEKHFPKVVKNLEMSYYLLIISNLVLKLLIAICM
Ga0307516_106982512	3300031730	Ectomycorrhiza	MENTFQSKKNLAWFPGKCFLFILDGKHFPEAMKNLEMPYYLLIISNLVLKLLIDHIYIYIYIYIYILF
Ga0307516_108363541	3300031730	Ectomycorrhiza	MENTFPSKKNLTWFTGNCFPIILDGKHFPEVVKILEMSYYLIIISNLVLKLLIAIYIYIYFGPYFY
Ga0307516_108533031	3300031730	Ectomycorrhiza	MKNTFQSKKNLAWFPGKCFPFILGGKHFPEVVKNLEMSYYLLIISNLVLNLLIAIY
Ga0307516_108574001	3300031730	Ectomycorrhiza	LQSKKNLVWFPEKYFPLILGGKHFIEIVKNLEMTYYLLIISNLVLKLLIAIYIFCFEYFFFNFIP
Ga0307516_108933661	3300031730	Ectomycorrhiza	NEKHFPVKKNLAWFSGKCFSFILDGKHFPEVLKNLEISYYLLIISNLILKLLIDIYCF
Ga0307516_109395671	3300031730	Ectomycorrhiza	MKNIFWSTENTFQSKKNLAWFSEKCFPFILDGKHFLEVVKNLEMSYYLLIISNIVLKLLIAIYILF
Ga0307518_100008115	3300031838	Ectomycorrhiza	MKNTFQSTENIFQSKKNLAWFLEKCFPFILDGKHFLKVVKKLEMLYYLMIISNLVLKLLIAMYILF
Ga0307518_100101781	3300031838	Ectomycorrhiza	VKKKHILVKKNLTWFSGKCFPFILSEKHFPEVAKKLEISYSLLIIINLVLKFLIAIYSVLNLFF
Ga0307518_100754673	3300031838	Ectomycorrhiza	MENTFQSKKNLAWFSGKCFPFILGGKYFMEVVKNLEMSYYLLIISNLVLKLLFAIYILF
Ga0325403_10011006	3300032354	Xylem	MENTFQSTENTFQSKKNLVWFPEKCFPFILGGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIYIFCFSISFLIILFLY
Ga0325403_10214042	3300032354	Xylem	MKNTFQLKKNLVWFLEKCFPFILGVKHFLEIVKNLEILYYLLIITNFILKLSIAIYFVLNLFFLFNFTP
Ga0325403_10490423	3300032354	Xylem	MKNNFQSMKNTFQLKKKLAWFLRKYFPFILNGKHFSEVVKNLEMLYYLLIISNLVLKLLIAIYILF
Ga0325403_10495192	3300032354	Xylem	MKNTFRSMKNIFQSKKNLVWFLEKYIPSILREKQFLEVVKNLEMSYYLLIMSNLVLKFFIAIYILF
Ga0325403_11115661	3300032354	Xylem	MENTFRLTENTFQSNEILAWFSEKYFPFILGGKHFLKVVKNLEKSYNLLIISNLVLKLLIGIYILV
Ga0325401_10177024	3300032355	Xylem	MKNIFQSKKNLVWFLEKYIPSILREKQFLEVVKNLEMSYYLLIMSNLVLKFFIAIYILF
Ga0325401_10555772	3300032355	Xylem	MENTFQSKKNLTWFSKKYFPFILGEKHFPEVMKNLETSCYLLIISNLVLKLLIAIYFVLKLFFFNFIP
Ga0325401_10643964	3300032355	Xylem	MKNTFQLKKNLTWFSEKYFSFILDKKYFLEVIKNLERSYYLSIISNLVLKFLIAIYIYIFEYLFFNFIP
Ga0325401_10849451	3300032355	Xylem	MKNTFQLKKKLAWFLRKYFPFILNGKHFSEVVKNLEMLYYLLIISNLVLKLLIAIYILF
Ga0325405_10005792	3300032389	Xylem	MKNIFQSTKNIFLLKKNLACFSGNCFPFILGEKYFPEVVKILKISYYLLIMLNLILKLLIAIYFV
Ga0325405_10015121	3300032389	Xylem	MENTFRSKKNLALFPEKCFPFSLDGKHFPEVVKNLEMLYYLPIISNLALKLLIAIYIYIL
Ga0325405_100218711	3300032389	Xylem	MKNIFQSKEIMVWFIGKYFPSILREKQFLEIVKNLEMSYYLLIISNLVLKFLIAIYILF
Ga0325405_10074878	3300032389	Xylem	MENTFQSKKNLVWFPGKCFPFILGGKHFLEVVKNLEMSYYLLIILNLVLKLLIAIYILF
Ga0325405_10236653	3300032389	Xylem	MENTFRLIENTFRSMKNLAWFLEKYFPFILGKKHFPEVVTNLEMSYYLLIISNLVFKLLIAIYILF
Ga0325405_10427853	3300032389	Xylem	MKNIFQSKKNLAWFPEKCFLFILDGKHFLKVVKNLEMSYYLLIISNLILKFLIVIYILF
Ga0325405_10566591	3300032389	Xylem	MKNIFQLKENLAWFPGKCFPFILDGKHFLEVVKNLEMLYYLLIISNLIIKLLIAIYIYIFEYLFF
Ga0325405_10853313	3300032389	Xylem	MKNNFQSMKNTFQSMKNLAWFLKKYFPFILNGKHFSEVVKNLEMLYYLLIISNLVLKLLIAIYILF
Ga0325405_10853722	3300032389	Xylem	MKNTFQLKKKLAWFLRKYFPFILNGKHFSEVVKNLEILYYLLIISNLVLKLLIAIYILF
Ga0325404_10010327	3300032390	Xylem	MKNIFQSKEILVWFIGKYFPSILREKQFLEIVKNLEMSYYLLIISNLVLKFLFAIYILF
Ga0325410_10217794	3300032735	Xylem	LINKKHFPDKKNLTWFSGKYFPEKFEQKHFLEVVKNLKISYYLLIISNLVLKLLIAIYIL
Ga0325411_10009177	3300032740	Xylem	MENTFRSTENIFQSKENLAWFPGNCFLFILGRKHFPEVVKNLEMLYYLLIISNLIFKLLIAIYILF
Ga0325411_10173631	3300032740	Xylem	NTGKWFPGNHFPGNKRLILGGKYFPEVVKNFKISYYLLIISNLILKILIAIYILF
Ga0307507_100122402	3300033179	Ectomycorrhiza	MKNTFQSRKNLAWFLEKCFPFILGGKHFSKIVKILKISYYLLIITNLALKLFIAIYFILNLFF
Ga0307507_100144621	3300033179	Ectomycorrhiza	FQSKKNLAWFPKKYFPEKFGRKTLSRSCENLEMSFYLLIISNLVLKLLIAIYILF
Ga0307507_100255015	3300033179	Ectomycorrhiza	MKNTFQSKKNLGWFPGKCFPFILGGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIY
Ga0307507_1002817812	3300033179	Ectomycorrhiza	MENTFRSTENTLQSKKNLAWFSGKCFHFILEGKHFPEVVKNLEMSYYLLIISNLVLKLL
Ga0307507_100312281	3300033179	Ectomycorrhiza	MKNIFRSKKNLAWFPGKCFPFILGGKYFPEIVKNIEMSYYLLIISNLILKLLIAIYI
Ga0307507_100601901	3300033179	Ectomycorrhiza	MKNTFQSKKNLVWFSGKYFPFILDGKHFLQVVKNLEMSYYLLIISNLILKLLIAICILF
Ga0307507_102845491	3300033179	Ectomycorrhiza	MKNTFQSKKNLVWFSEKYFPFILGGKHFLEVVKNLKISYYLLIISNLVFKLLIAIYIFF
Ga0307507_105982921	3300033179	Ectomycorrhiza	KENLAWFQEKCFPFILDGKHFSKVVKNLEMSYYLLIISNLILKLLIAIYIFF
Ga0307507_105993631	3300033179	Ectomycorrhiza	RSTENTFQSKKNLAWFSGKCFPFILGGKHFPEVVKNLEMSYYLLIISNLVLKLLIAIFIL
Ga0307510_100203351	3300033180	Ectomycorrhiza	MENTFQSKENLAWFSGKCFPFILGGKHFPEIMKNLEMSYYMLIISNLVLKLLIAIYFCFEYLFFNFIP
Ga0307510_100543182	3300033180	Ectomycorrhiza	MEYTFRSTKNIFQSNENLAWFSGKCFPFIMDGKHFPEVVKNLEISYYLLIISNLVLKFLIAIYILF
Ga0307510_100730903	3300033180	Ectomycorrhiza	MENTFQSKKNLALFPGKCFPFILDGKHFPEVVKNLEISYYLLIISNLVLKLLIDIYFV
Ga0307510_100777012	3300033180	Ectomycorrhiza	MKNTFQSKKNLVWFLGKCFPFILGGKHFPEVVKNLKISYYLLIISNLVLKLLIAKYILF
Ga0307510_101435462	3300033180	Ectomycorrhiza	MKNTFQSKKNLAWFSGKCFPFILGGKHFSEVMKNLKISCYLPIISDLVLKLLIAIYFALIFFFNFIP
Ga0307510_101468721	3300033180	Ectomycorrhiza	MKNTFWLIKNTFQSKKNLAWFSRKCFPFILGGKLFPEIVKNLEMSYYLLIISNLILKLLIAIYILL
Ga0307510_101491942	3300033180	Ectomycorrhiza	MKNIFQLKKNLVWLLKKYFPSILEGKHFPEIVKNIEISYYLLIIINLILKLFIAIYFILIFFCSTHPLEFDLI
Ga0325419_000672_3279_3482	3300034389	Leaf	MKNTFQLKKNLPWFSGKCFPFILREKHFIEIVKKLEISYYLLIITNSIFKFLIAIYFVLNFFFNFTP
Ga0325419_014959_255_461	3300034389	Leaf	MENIFQSKKNLTWFSKKYFPFILGEKHFPEVMKNLETSCYLLIISNLVLKLLIAIYFVLKLFFFNFIP
Ga0325419_018975_4553_4732	3300034389	Leaf	MENAFQSKKNLAWFLEKYFPFILSGKHFSKVVKNLEISYYLLIISNLILKLLIAIYILF
Ga0325419_054523_1803_1994	3300034389	Leaf	MKNTFQLKENLAWFPGKCFPFILDGKHFLEVVKNLEMLYYLLILSNLIFKFLIAIYIYYFFLF
Ga0325419_082382_211_411	3300034389	Leaf	MKNNFQSMKNTFQLKKKLAWFLRKYFPFILNGKHFSEVVKNLEILYYLLIISNLVLKLLIAIYILF
Ga0325409_028945_318_518	3300034901	Xylem	MKNIFQLTKNTFHSKENLIWFSEKCFPFILDGKYFLEIMKNLEMSYYLLIISNLVLKLLIAIYILF

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075496

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences