Metagenome / Metatranscriptome Family F075762

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075762
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	121 residues
Representative Sequence	AVVLLVAEGCSMAGGTLGGREKCWPESHHRMPSVWRGILRIDASGGRLETPEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS
Number of Associated Samples	83
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	42.37 %
% of genes near scaffold ends (potentially truncated)	39.83 %
% of genes from short scaffolds (< 2000 bps)	89.83 %
Associated GOLD sequencing projects	80
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.76

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (61.017 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil (18.644 % of family members)
Environment Ontology (ENVO)	Unclassified (29.661 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (46.610 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 2.14% β-sheet: 42.14% Coil/Unstructured: 55.71%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.76
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.76
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SCOP family	SCOP domain	Representative PDB	TM-score
b.40.4.0: automated matches	d6nrza1	6nrz	0.60442
b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain	d3ja851	3ja8	0.5941
b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain	d3ja871	3ja8	0.5938
b.40.4.11: DNA replication initiator (cdc21/cdc54) N-terminal domain	d3ja821	3ja8	0.58685
b.40.4.0: automated matches	d6hcwa1	6hcw	0.58512

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF08818	DUF1801	5.08
PF13376	OmdA	4.24
PF01668	SmpB	2.54
PF12680	SnoaL_2	2.54
PF00484	Pro_CA	1.69
PF10604	Polyketide_cyc2	1.69
PF00089	Trypsin	1.69
PF00941	FAD_binding_5	1.69
PF13489	Methyltransf_23	0.85
PF03099	BPL_LplA_LipB	0.85
PF07704	PSK_trans_fac	0.85
PF01738	DLH	0.85
PF03454	MoeA_C	0.85
PF01494	FAD_binding_3	0.85
PF02566	OsmC	0.85
PF05163	DinB	0.85
PF03992	ABM	0.85
PF13243	SQHop_cyclase_C	0.85
PF00528	BPD_transp_1	0.85
PF12804	NTP_transf_3	0.85
PF01551	Peptidase_M23	0.85
PF00296	Bac_luciferase	0.85
PF01053	Cys_Met_Meta_PP	0.85
PF01799	Fer2_2	0.85
PF00999	Na_H_Exchanger	0.85
PF01839	FG-GAP	0.85
PF09594	GT87	0.85
PF11236	DUF3037	0.85
PF06185	YecM	0.85
PF01544	CorA	0.85
PF12867	DinB_2	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG4430	Uncharacterized conserved protein YdeI, YjbR/CyaY-like superfamily, DUF1801 family	Function unknown [S]	5.08
COG5646	Iron-binding protein Fra/YdhG, frataxin family (Fe-S cluster biosynthesis)	Posttranslational modification, protein turnover, chaperones [O]	5.08
COG5649	Uncharacterized conserved protein, DUF1801 domain	Function unknown [S]	5.08
COG0691	tmRNA-binding protein	Posttranslational modification, protein turnover, chaperones [O]	2.54
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	1.69
COG0654	2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases	Energy production and conversion [C]	1.69
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.85
COG0075	Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucG	Amino acid transport and metabolism [E]	0.85
COG0095	Lipoate-protein ligase A	Coenzyme transport and metabolism [H]	0.85
COG0156	7-keto-8-aminopelargonate synthetase or related enzyme	Coenzyme transport and metabolism [H]	0.85
COG0303	Molybdopterin Mo-transferase (molybdopterin biosynthesis)	Coenzyme transport and metabolism [H]	0.85
COG0321	Lipoate-protein ligase B	Coenzyme transport and metabolism [H]	0.85
COG0340	Biotin-protein ligase	Coenzyme transport and metabolism [H]	0.85
COG0399	dTDP-4-amino-4,6-dideoxygalactose transaminase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG0436	Aspartate/methionine/tyrosine aminotransferase	Amino acid transport and metabolism [E]	0.85
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.85
COG0520	Selenocysteine lyase/Cysteine desulfurase	Amino acid transport and metabolism [E]	0.85
COG0578	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.85
COG0626	Cystathionine beta-lyase/cystathionine gamma-synthase	Amino acid transport and metabolism [E]	0.85
COG0644	Dehydrogenase (flavoprotein)	Energy production and conversion [C]	0.85
COG0665	Glycine/D-amino acid oxidase (deaminating)	Amino acid transport and metabolism [E]	0.85
COG1764	Organic hydroperoxide reductase OsmC/OhrA	Defense mechanisms [V]	0.85
COG1765	Uncharacterized OsmC-related protein	General function prediction only [R]	0.85
COG1921	Seryl-tRNA(Sec) selenium transferase	Translation, ribosomal structure and biogenesis [J]	0.85
COG1982	Arginine/lysine/ornithine decarboxylase	Amino acid transport and metabolism [E]	0.85
COG2008	Threonine aldolase	Amino acid transport and metabolism [E]	0.85
COG2141	Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)	Coenzyme transport and metabolism [H]	0.85
COG2318	Bacillithiol/mycothiol S-transferase BstA/DinB, DinB/YfiT family (unrelated to E. coli DinB)	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG2873	O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependent	Amino acid transport and metabolism [E]	0.85
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.85
COG3102	Uncharacterized conserved protein YecM, predicted metalloenzyme	General function prediction only [R]	0.85
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.85
COG4100	Cystathionine beta-lyase family protein involved in aluminum resistance	Inorganic ion transport and metabolism [P]	0.85
COG4423	Uncharacterized conserved protein	Function unknown [S]	0.85
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	61.02 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	61.02 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	61.02 %
Unclassified	root	N/A	38.98 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	37.29 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %
Bacteria incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	25.42 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	9.32 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %
Bacteria candidate phyla	clade	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	10.17 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	5.93 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %
Candidatus Eisenbacteria	phylum	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.17 %
Corynebacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales	1.69 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.17 %
Nocardiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	1.69 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.17 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %
Nocardia	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia	0.85 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	38.98 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	10.17 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %
Nocardia puris	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia puris	0.85 %
Candidatus Eisenbacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	0.85 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_105077760	Not Available	647	Open in IMG/M
3300000956\|JGI10216J12902_103259624	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	937	Open in IMG/M
3300000956\|JGI10216J12902_103567808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	923	Open in IMG/M
3300000956\|JGI10216J12902_105190465	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae → Nocardia → Nocardia puris	1459	Open in IMG/M
3300000956\|JGI10216J12902_108586456	Not Available	1110	Open in IMG/M
3300000956\|JGI10216J12902_109865609	Not Available	638	Open in IMG/M
3300000956\|JGI10216J12902_110811442	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	724	Open in IMG/M
3300000956\|JGI10216J12902_121093145	Not Available	626	Open in IMG/M
3300004081\|Ga0063454_100040617	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1750	Open in IMG/M
3300004081\|Ga0063454_100325728	Not Available	979	Open in IMG/M
3300004114\|Ga0062593_100042902	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	2733	Open in IMG/M
3300004156\|Ga0062589_100087930	All Organisms → cellular organisms → Bacteria	1925	Open in IMG/M
3300004156\|Ga0062589_100458048	All Organisms → cellular organisms → Bacteria → Proteobacteria	1059	Open in IMG/M
3300004156\|Ga0062589_102152681	All Organisms → cellular organisms → Bacteria	570	Open in IMG/M
3300004157\|Ga0062590_100533506	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1011	Open in IMG/M
3300004157\|Ga0062590_101699827	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	643	Open in IMG/M
3300004463\|Ga0063356_100544783	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300004463\|Ga0063356_100940964	All Organisms → cellular organisms → Bacteria	1226	Open in IMG/M
3300004463\|Ga0063356_103974754	All Organisms → cellular organisms → Bacteria	636	Open in IMG/M
3300004463\|Ga0063356_106238455	Not Available	511	Open in IMG/M
3300004480\|Ga0062592_100821603	All Organisms → cellular organisms → Bacteria	827	Open in IMG/M
3300004480\|Ga0062592_101130253	All Organisms → cellular organisms → Bacteria	727	Open in IMG/M
3300004480\|Ga0062592_101308493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	684	Open in IMG/M
3300004480\|Ga0062592_101672676	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	618	Open in IMG/M
3300004643\|Ga0062591_100211763	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1436	Open in IMG/M
3300004643\|Ga0062591_101095358	All Organisms → cellular organisms → Bacteria	767	Open in IMG/M
3300005093\|Ga0062594_101593414	Not Available	676	Open in IMG/M
3300005440\|Ga0070705_100574663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	868	Open in IMG/M
3300005444\|Ga0070694_100168853	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1610	Open in IMG/M
3300005543\|Ga0070672_100116753	All Organisms → cellular organisms → Bacteria	2181	Open in IMG/M
3300005841\|Ga0068863_102703578	All Organisms → cellular organisms → Bacteria → Terrabacteria group	505	Open in IMG/M
3300005842\|Ga0068858_101116703	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300005842\|Ga0068858_101398828	All Organisms → cellular organisms → Bacteria	689	Open in IMG/M
3300005843\|Ga0068860_100490808	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1225	Open in IMG/M
3300005843\|Ga0068860_101310615	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	745	Open in IMG/M
3300006918\|Ga0079216_12011149	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Corynebacteriales → Nocardiaceae	501	Open in IMG/M
3300007004\|Ga0079218_10877327	Not Available	877	Open in IMG/M
3300007004\|Ga0079218_12608553	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300009094\|Ga0111539_10031033	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	6493	Open in IMG/M
3300009098\|Ga0105245_11860618	Not Available	655	Open in IMG/M
3300009100\|Ga0075418_10239898	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1930	Open in IMG/M
3300009100\|Ga0075418_11308458	Not Available	786	Open in IMG/M
3300009147\|Ga0114129_10083318	All Organisms → cellular organisms → Bacteria	4443	Open in IMG/M
3300009177\|Ga0105248_11268795	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	833	Open in IMG/M
3300009811\|Ga0105084_1075877	All Organisms → cellular organisms → Bacteria	615	Open in IMG/M
3300010039\|Ga0126309_10014185	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	3358	Open in IMG/M
3300010039\|Ga0126309_10419806	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	805	Open in IMG/M
3300010044\|Ga0126310_10044089	All Organisms → cellular organisms → Bacteria	2436	Open in IMG/M
3300010044\|Ga0126310_10919444	Not Available	683	Open in IMG/M
3300010045\|Ga0126311_10101804	Not Available	1973	Open in IMG/M
3300010045\|Ga0126311_11683646	All Organisms → cellular organisms → Bacteria → Terrabacteria group	535	Open in IMG/M
3300010373\|Ga0134128_10930932	Not Available	961	Open in IMG/M
3300010397\|Ga0134124_11833857	Not Available	641	Open in IMG/M
3300010397\|Ga0134124_12476596	Not Available	561	Open in IMG/M
3300010400\|Ga0134122_10250963	All Organisms → cellular organisms → Bacteria	1495	Open in IMG/M
3300010400\|Ga0134122_10800362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	899	Open in IMG/M
3300010401\|Ga0134121_11001517	Not Available	820	Open in IMG/M
3300010403\|Ga0134123_10879253	All Organisms → cellular organisms → Bacteria	899	Open in IMG/M
3300011119\|Ga0105246_10687850	All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Eisenbacteria → Candidatus Eisenbacteria bacterium	895	Open in IMG/M
3300011119\|Ga0105246_12039730	Not Available	554	Open in IMG/M
3300012910\|Ga0157308_10077120	Not Available	933	Open in IMG/M
3300012911\|Ga0157301_10025009	Not Available	1356	Open in IMG/M
3300012955\|Ga0164298_10216058	All Organisms → cellular organisms → Bacteria → Acidobacteria	1132	Open in IMG/M
3300012958\|Ga0164299_11484080	All Organisms → cellular organisms → Bacteria → Acidobacteria	528	Open in IMG/M
3300012961\|Ga0164302_10296148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1054	Open in IMG/M
3300012964\|Ga0153916_10639492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1142	Open in IMG/M
3300012981\|Ga0168316_104731	All Organisms → cellular organisms → Bacteria	2960	Open in IMG/M
3300012989\|Ga0164305_11773438	Not Available	556	Open in IMG/M
3300013308\|Ga0157375_11002259	Not Available	975	Open in IMG/M
3300014325\|Ga0163163_11391773	Not Available	763	Open in IMG/M
3300014968\|Ga0157379_10301533	All Organisms → cellular organisms → Bacteria	1460	Open in IMG/M
3300014968\|Ga0157379_10768256	All Organisms → cellular organisms → Bacteria	908	Open in IMG/M
3300015077\|Ga0173483_10350770	Not Available	741	Open in IMG/M
3300015200\|Ga0173480_10392707	Not Available	803	Open in IMG/M
3300015371\|Ga0132258_11480024	Not Available	1715	Open in IMG/M
3300015371\|Ga0132258_11491227	Not Available	1708	Open in IMG/M
3300015371\|Ga0132258_11705847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1589	Open in IMG/M
3300015372\|Ga0132256_100579315	Not Available	1236	Open in IMG/M
3300015372\|Ga0132256_102205866	Not Available	655	Open in IMG/M
3300015373\|Ga0132257_100642040	Not Available	1315	Open in IMG/M
3300017965\|Ga0190266_10025979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1793	Open in IMG/M
3300018059\|Ga0184615_10009929	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	5175	Open in IMG/M
3300018422\|Ga0190265_10426026	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1429	Open in IMG/M
3300018432\|Ga0190275_10215610	All Organisms → cellular organisms → Bacteria	1827	Open in IMG/M
3300018432\|Ga0190275_10318641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1533	Open in IMG/M
3300018476\|Ga0190274_11813712	Not Available	705	Open in IMG/M
3300018476\|Ga0190274_13768218	Not Available	513	Open in IMG/M
3300019356\|Ga0173481_10009131	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	2757	Open in IMG/M
3300019356\|Ga0173481_10031874	Not Available	1697	Open in IMG/M
3300019362\|Ga0173479_10096701	Not Available	1085	Open in IMG/M
3300020020\|Ga0193738_1013623	All Organisms → cellular organisms → Bacteria	2620	Open in IMG/M
3300023066\|Ga0247793_1053859	Not Available	648	Open in IMG/M
3300024055\|Ga0247794_10080131	Not Available	943	Open in IMG/M
3300025913\|Ga0207695_11601137	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	532	Open in IMG/M
3300025933\|Ga0207706_11352652	Not Available	586	Open in IMG/M
3300025937\|Ga0207669_11789007	Not Available	525	Open in IMG/M
3300025941\|Ga0207711_10878203	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	834	Open in IMG/M
3300025961\|Ga0207712_11291362	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	652	Open in IMG/M
3300025981\|Ga0207640_11226240	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	668	Open in IMG/M
3300026035\|Ga0207703_10994421	Not Available	805	Open in IMG/M
3300026088\|Ga0207641_11946564	All Organisms → cellular organisms → Bacteria → Terrabacteria group	589	Open in IMG/M
3300028380\|Ga0268265_12226190	Not Available	555	Open in IMG/M
3300028589\|Ga0247818_11269517	Not Available	528	Open in IMG/M
3300030336\|Ga0247826_10249359	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1246	Open in IMG/M
3300030336\|Ga0247826_11706072	Not Available	514	Open in IMG/M
3300030620\|Ga0302046_10057862	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	3148	Open in IMG/M
3300031091\|Ga0308201_10219197	All Organisms → cellular organisms → Bacteria	639	Open in IMG/M
3300031716\|Ga0310813_10220186	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1566	Open in IMG/M
3300031854\|Ga0310904_11377200	Not Available	513	Open in IMG/M
3300031858\|Ga0310892_10377533	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	917	Open in IMG/M
3300031949\|Ga0214473_11492369	Not Available	683	Open in IMG/M
3300031965\|Ga0326597_10365255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1617	Open in IMG/M
3300031995\|Ga0307409_102513209	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	544	Open in IMG/M
3300032013\|Ga0310906_10893222	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	633	Open in IMG/M
3300032126\|Ga0307415_102561105	Not Available	503	Open in IMG/M
3300033417\|Ga0214471_10049469	All Organisms → cellular organisms → Bacteria	3429	Open in IMG/M
3300034147\|Ga0364925_0430862	Not Available	502	Open in IMG/M
3300034151\|Ga0364935_0276790	Not Available	550	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	66.95%
Host-Associated	Host-Associated	33.05%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	65.25%
Plants	Host-Associated → Plants	33.05%
Aquatic	Environmental → Aquatic	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	62.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	17.80%
Rhizoplane	Host-Associated → Plants → Rhizoplane	14.41%
Floodplain	Environmental → Terrestrial → Floodplain	1.69%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Sediment	Environmental → Aquatic → Sediment	0.85%
Geologic	Environmental → Terrestrial → Geologic	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	58.47%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	13.56%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	11.02%
Soil	Host-Associated → Plants → Rhizosphere → Soil	4.24%
Loam	Environmental → Terrestrial → Soil → Loam	3.39%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.39%
Sediment	Environmental → Terrestrial → Floodplain → Sediment	1.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Sand	Environmental → Terrestrial → Soil → Sand	0.85%
Mine	Environmental → Terrestrial → Geologic → Mine	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	29.66%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	15.25%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	13.56%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	11.02%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.78%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	4.24%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.39%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	1.69%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	1.69%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.69%
Unclassified	Environmental → Terrestrial → Floodplain → Sediment → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Soil → Sand → Unclassified	0.85%
Unclassified	Environmental → Terrestrial → Geologic → Mine → Unclassified	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	18.64%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	11.02%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	6.78%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	6.78%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	5.93%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.08%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.39%
Arabidopsis Thaliana Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere	3.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	3.39%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	2.54%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	2.54%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	2.54%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	1.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.69%
Sediment	Environmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment	1.69%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	1.69%
Freshwater Wetlands	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands	0.85%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Groundwater Sand	Environmental → Terrestrial → Soil → Sand → Unclassified → Groundwater Sand	0.85%
Weathered Mine Tailings	Environmental → Terrestrial → Geologic → Mine → Unclassified → Weathered Mine Tailings	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000956	Soil microbial communities from Great Prairies - Kansas, Native Prairie soil	Environmental	Open in IMG/M
3300004081	Grasslands soil microbial communities from Hopland, California, USA - 2 (version 2)	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004156	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 1	Environmental	Open in IMG/M
3300004157	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2	Environmental	Open in IMG/M
3300004463	Combined assembly of Arabidopsis thaliana microbial communities	Host-Associated	Open in IMG/M
3300004480	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 4	Environmental	Open in IMG/M
3300004643	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Combined assembly of AARS Block 3	Environmental	Open in IMG/M
3300005093	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All Blocks	Environmental	Open in IMG/M
3300005440	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG	Environmental	Open in IMG/M
3300005444	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300005842	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2	Host-Associated	Open in IMG/M
3300005843	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300009094	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2)	Host-Associated	Open in IMG/M
3300009098	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009811	Groundwater microbial communities from the Columbia River, Washington, USA - GW-RW N3_20_30	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010373	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012910	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S198-509B-2	Environmental	Open in IMG/M
3300012911	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S088-202R-2	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012961	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_202_MG	Environmental	Open in IMG/M
3300012964	Freshwater wetland microbial communities from Ohio, USA - Open water 3 Core 3 Depth 4 metaG	Environmental	Open in IMG/M
3300012981	Weathered mine tailings microbial communities from Hibbing, Minnesota, USA - DT8	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013308	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300014968	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG	Host-Associated	Open in IMG/M
3300015077	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S178-409R-2 (version 2)	Environmental	Open in IMG/M
3300015200	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S209-509C-1 (version 2)	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300017965	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 220 T	Environmental	Open in IMG/M
3300018059	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_65_coex	Environmental	Open in IMG/M
3300018422	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 T	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300019362	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S104-311B-1 (version 2)	Environmental	Open in IMG/M
3300020020	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L2a1	Environmental	Open in IMG/M
3300023066	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S223-509R-6	Environmental	Open in IMG/M
3300024055	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, United States - UWRJ-S046-202B-6	Environmental	Open in IMG/M
3300025913	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025937	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025961	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026035	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026088	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028380	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300028589	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 13C_Glucose_Day1	Environmental	Open in IMG/M
3300030336	Soil microbial communities from agricultural site in Penn Yan, New York, United States - 12C_Control_Day1	Environmental	Open in IMG/M
3300030620	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT147D111	Environmental	Open in IMG/M
3300031091	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_355 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031854	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D1	Environmental	Open in IMG/M
3300031858	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2	Environmental	Open in IMG/M
3300031949	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT98D197	Environmental	Open in IMG/M
3300031965	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT100D185	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032013	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C48D3	Environmental	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033417	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155	Environmental	Open in IMG/M
3300034147	Sediment microbial communities from East River floodplain, Colorado, United States - 44_j17	Environmental	Open in IMG/M
3300034151	Sediment microbial communities from East River floodplain, Colorado, United States - 2_s17	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1050777602	3300000364	Soil	MDRRFSALAGAFLVALVGGCSLAGGTLGGRDQCWPASDKRAPSLFRGILLIDAAGGRLATHEGDVITLKAGALRPVMGADGTGQLVRGTEVVARAGSDVTLFGGAGSDGALVVCDVEEIH
JGI10216J12902_1032596242	3300000956	Soil	HVNGSAVHPCSMIHSGHVDPAHRAGTMPAMRSVPRSLVPIAALALAIAGCSMAGGTLGGRDRCWPESDHRAASIWRGVLRISGSGAELDTPEGDVIPLLPGALQTRLGEAGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVVCGVEEIHSS*
JGI10216J12902_1035678082	3300000956	Soil	MRSRLSIGVALTAALLVSTGCSINALGGREECWPEGDPRAASLWRGTLRIDAAGGRLETLEGDIIPLIPGAIEIRGGPDGNGELVRGSDVVSRAGDYVTLFGGAGADGSLVVCAVEEIHSTAS*
JGI10216J12902_1051904651	3300000956	Soil	VRNRLGIPLLVVAIFGVAGCNVSGNLLGGREECWGEEPRAASIWRGILAIDEFGSRLDTPEGEAIPLLPGALTMRIGGDARGELVAGDQVVARTGDDVTLFGGAGGDGALVVCAVEEIH*
JGI10216J12902_1085864562	3300000956	Soil	GDVQRRRAALALAAVLLFAISGCSLTGGTLGGREKCWPAEPPRGASIWRGTLSIDQNGGALLTPEGEAIALLPGTLTTRIGGDGTGELVEGDNVVARAGADLTLFGGMGADGGLVVCGIEEIHSTP*
JGI10216J12902_1098656091	3300000956	Soil	VRQASPGDERWHVVVTFIVLSLAIGGCSFQPNLLGGREKCWPESPPRAASIWRGILRIESAGGRLETPEGDVIPLLPGTLATRVGSSGVGELTLGSDVVAKAGDDVTLFGGAGADGALVVCGVEEIHSSS*
JGI10216J12902_1108114421	3300000956	Soil	MGSGTLGGHEKCWPESERRAASLWRGILRIDARGGRLDTPEGEVIPLRAGALSILPGASGGGELLRGSEVIARAGDDVTLFGGAGADGVLVVCAVEENRSAT*
JGI10216J12902_1210931451	3300000956	Soil	VSIVLRPARRYRILALATALLLPVGCSMGSGTLGGHEKCWPDSERRAASLWRGTLRIDARGGRLDTPEGDAIPLRAGALSILPGAAGGGELLRGSDVLARDGDDVTLFGGAGADGALVVCAVEENRSAS*
Ga0063454_1000406172	3300004081	Soil	VVLRLGSLAVAAASVAVLLAAAACAMTGGTLGGRQTCWPESQKRVASLWRGTLGIDGSGARLNTPEGDVIPLAPGAVTFRVGSTGTGELVRGTEVIATAGDDVSLFGGAGSDGTLVVCDVEENRH*
Ga0063454_1003257281	3300004081	Soil	MNKSRLELSTGILIAVLLMGCSVAGGTLGGRSKCWPESDPRMPSLFRGILKIDQAGGRLDTSEGDQIPLHSGSLRISLAADGTGQLLRGNEIAAREGDDVTLFGGAGSDGALVVCDVEEIH*
Ga0062593_1000429022	3300004114	Soil	VRAWTLSLVVAAVFAVAGCSITGGTLGGRDKCWPADPPRAASVWRGTLAIDAGNASLYTPEGEIIALAPGALAWRVGADGTGELVAGDQVVATAGQDVTLFGGAGADGYLVVCAVEEIHSGGEG*
Ga0062589_1000879301	3300004156	Soil	MAPRSLTIAAVLILAACSLAGGTLGGRQKCWPASESRVPSLFRGILVIDSAGGRLRTSEGEVIPLVAGNLRTQVGPSGTGELVAGTEVVASAGDDVTLFGGAGADGRLIVCAVEEKH*
Ga0062589_1004580482	3300004156	Soil	MPLAIAVVLLVAEGCSMAGGTLGGREKCWPESHHRMPSVWRGILRIDASGGRLETPEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS*
Ga0062589_1021526811	3300004156	Soil	MSRRLGPLVLAVALLATAGCALAGGTLGGREKCWPAADPRQASIWRGILQVDAGGGRLLTPEGDVIPLLPGALTPRIGATGGELVAGDRVVAKAGADVTLFGGAGADGALVVCGVEEIHSSP*
Ga0062590_1005335062	3300004157	Soil	VSNRGYSVLAAVILVAFVTGCSLAGGTLGGREKCWPPSDKRVPSLFRGILRVDAEGGRLATNEGDVIPLKAGALRPVVGADGTGQLVSGLEVVARAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0062590_1016998272	3300004157	Soil	SVTGGTLGGRDTCWPPSEHRMASIWRGVLRIDASQAELDTPEGDVILLIAGAIQTRIGEGGVGQLVRGADVVATAGQDVTLFGGAGSDGALVVCAVEEIHGS*
Ga0063356_1005447832	3300004463	Arabidopsis Thaliana Rhizosphere	MRVRTLHLVLATVFAVAGCSITGGTLGGREKCWPADPPRAASVWRGTLAIDAGNASLYTPEGEVIALAPGALAWRLGADGTGELVAGDNVVATAGQDVTLFGGAGADGYLVVCGVEEIHSGGEG*
Ga0063356_1009409641	3300004463	Arabidopsis Thaliana Rhizosphere	MAGGTLGGREKCWPESHHRMPSVWRGILRIDASGGRLETPEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS*
Ga0063356_1039747541	3300004463	Arabidopsis Thaliana Rhizosphere	MTRGLRLIGLTLVLASVAGCGLLGGTLGGREKCWSANDPRQASIWRGVLEIDASGGRLNTPEGDVIPLRAGALTPRVGRSGAGELVAGDRVVARAGDDVTLFGGAGADGFLVVCGVEEVHSGG*
Ga0063356_1062384551	3300004463	Arabidopsis Thaliana Rhizosphere	HDVRDDRDRMGDRQRVKTEASRQHHRLGLVFALALLATVGCALTGGTLGGREKCWPESDKRAPSIWRGTLQIDASGARLATPEGDVIPLLPGTLTTRFGASGTGELVKGDQVAAKAGDDVTLFGGAGSDGALVVCGVEEIHTAP*
Ga0062592_1008216032	3300004480	Soil	VDNRLVNLLVGLLVVGTAGCSIAGGTLGGRQKCWPASDKRMPSLFRGILEVDAAGGRLATPEGEVIPLKAGALRPMVGADGRGQLVRGTEVLASAGSDVTLFGGAGSDGALVVCDVEEVH
Ga0062592_1011302532	3300004480	Soil	MALRSLAITAVLVLSGCALTGGTLGGRQKCWPPADSRAPSLFRGILVIDSAGGRLRTTEGEIIPLLPGTLRTQVGPSGTGELVRGTEVVATAGDDVTLFGGAGADGRLVVCAVEEKH*
Ga0062592_1013084932	3300004480	Soil	VSRTRGVASRALTLVVGLALLSSAGCTLAGGTLGGREKCWPEDPPRAASIWRGTLRIDASGGYLDTPEGEVIPLRAGTLATLVGEDGTGELVHGGDVVARAGNDVTLFGGAGADGALVVCGIEEIHATS*
Ga0062592_1016726761	3300004480	Soil	SALALLAMLVASACSVTGGTLGGRDTCWPPSEHRMASIWRGVLRIDASQAELDTPEGDVIPLIAGTIQTRIGEGGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVVCAVEEIHGS*
Ga0062591_1002117633	3300004643	Soil	VRAWTLSLVVAAVFAVAGCSITGGTLGGRDKCWPADPPRAASVWRGTLAIDAGNASLYTPEGEIIALAPGALAWRVGADGTGELVAGDQVVATAGQDVTLFGGAGADGYLVVCGVEEIHSGGEG*
Ga0062591_1010953582	3300004643	Soil	MLVGLLVVGTAGCSIAGGTLGGRQKCWPASDKRMPSLFRGILEVDAAGGRLATPEGEVIPLKAGALRPMVGADGRGQLARGTEVVASAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0062594_1015934141	3300005093	Soil	VKGLVLAVAFLIAGTAGCSLTGGTLGGRERCWPDTDRRAPSLWRGILRIDASGGRLDTPEGDVIPLLPGTLATRVGDTGTGELVRGSDVVAKAGDDVSLFGGAGADGRLVVCAVEENRGDS*
Ga0070705_1005746631	3300005440	Corn, Switchgrass And Miscanthus Rhizosphere	LSRRLMPLAIAVVLLVAEGCSMAGGTLGGREKCWPESHHRMPSVWRGILRIDASGGRLETPEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS*
Ga0070694_1001688531	3300005444	Corn, Switchgrass And Miscanthus Rhizosphere	RATIVLVHLSRRLMPLAIAVVLLVAEGCSMAGGTLGGREKCWPESHHRMPSVWRGILRIDASGGRLETPEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS*
Ga0070672_1001167533	3300005543	Miscanthus Rhizosphere	VKGLVLAVAFLIAGTAGCSLTGGTLGGRERCWPDTDRRAPSLWRGILRIDASGGRLDTPEGDVIPLLPGTLATRVGDTGTVELVRGSDVVAKAGDDVSLFGGAGADGRLVVCAVEENRGDS*
Ga0068863_1027035781	3300005841	Switchgrass Rhizosphere	LLSRWIVTLMVGLTLLTTAGCSLAGGTLGGREKCWATSDKRAASVWRGTLQIDASGARLQTPEGDVIPLLPGALTPRIAASGVGELVS
Ga0068858_1011167032	3300005842	Switchgrass Rhizosphere	LLINRILTIALAFIVLTTAGCSLAGGTLGGREKCWAESDRRAASLWRGTLQIDASGARLQTPEGDAIPILPGALTTRIGAGGTGELVAGDQVVAKAGDDVTLFGGAGSDGALVVCGVEEI
Ga0068858_1013988282	3300005842	Switchgrass Rhizosphere	LTTAGCSLAGGTLGGREKCWATSDKRAASVWRGTLQIDASGARLQTPEGDVIPLLPGALTPRIAASGVGELVSGDQVAARAGEDVTLFGGAGSDGALVVCAVEEIHSTSQGVR*
Ga0068860_1004908082	3300005843	Switchgrass Rhizosphere	LLINRILTIALAFIVLTTAGCSLAGGTLGGREKCWAESDRRAASLWRGTLQIDASGARLQTPEGDAIPLLPGALTTRIGAGGTGELVAGDQVVAKAGDDVTLFGGAGSDGALVVCGVEEIHTTP*
Ga0068860_1013106152	3300005843	Switchgrass Rhizosphere	VKTDASRQHHRLGFVLAFALLATVGCSLTGGTLGGREKCWPESDRRAPSIWRGTLQIDGSGARLATPEGDVIPLLPGALTTRFGASGTGELVKGDQVAARAGDDVTLFGGAGSDGALVVCGVEEIHTAP*
Ga0079216_120111492	3300006918	Agricultural Soil	LVVAGGCAIAGGTLGGRDTCWPETDSRAPSLWRGTLRIDASGGRLDTPEGDVIPLLPGALATRLGEGGAGELVRGSDVVARAGDDVTLFGGAGADGALVVCGLEAVHAAS*
Ga0079218_108773272	3300007004	Agricultural Soil	VFGADLLLLVVAISGVAGCNVSGNLLGGREECWGEEPRAASIWRGILAIDEFGSRLDTPEDEAIPLLPGAITMRVGEDARGELVAGDQVVARAGDDVTLFGGAGGDGALVVCAVEEVH*
Ga0079218_126085532	3300007004	Agricultural Soil	MGLERGLGRFIAVPALTIGVAACALGGGMLGGRETCWPDHEQRAASLWRGVLVIDATGSRLDTPEGDVIPLLPGELSMEVGEDGSGLLVRGDEVVALAGDDVTLFGGAGADGNLVVCAVESNRGGG*
Ga0111539_100310331	3300009094	Populus Rhizosphere	VAVSALALLAMLVASACSVTGGTLGGRDTCWPQSEHRMASIWRGVLRIDASQAELDTPEGDVIPLIAGAVQTRIGEGGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVVCAVEEIHGS*
Ga0105245_118606181	3300009098	Miscanthus Rhizosphere	VTGCSLAGGTLGGREKCWPPSDKRVPSLFRGILRVDAEGGRLATNEGDVIPLKAGALRPVVGADGTGQLVSGLEVVARAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0075418_102398982	3300009100	Populus Rhizosphere	VAVSALALLAMLVASACSVTGGTLGGRDACWPPSEHRMASIWRGVLRIDASQAELDTPEGDVIPLIAGAIQTRIGEGGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVVCAVEEIHDS*
Ga0075418_113084581	3300009100	Populus Rhizosphere	MLLIVAGCSIGFDTLGGREKCWPESDRRAPSLWRGILRIDATGAGLDTPEGDVIPLAPGALQFSGANLVRGSDVVATVGDDVTLFGGAGADGVLVVCAVEENRGPG*
Ga0114129_100833184	3300009147	Populus Rhizosphere	VAVSALALLAMLVASACSITGGTLGGRDTCWPQSEHRMASIWRGVLRIDASQAELDTPEGDVIPLIAGAIQTRIGEGGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVVCAVEEIHGS*
Ga0105248_112687952	3300009177	Switchgrass Rhizosphere	SLAGGTLGGREKCWATSDKRAASVWRGTLQIDASGARLQTPEGDVIPLLPGALTPRIAASGVGELVSGDQVAARAGEDVTLFGGAGSDGALVVCAVEEIHSTSQGVR*
Ga0105084_10758772	3300009811	Groundwater Sand	MRAGRGIAIAVGIAVLIAAGCSLTSGTLGGREKCWPESDQRASSLWRGTLRIDASGGQLETPEGDVIPLVPGTLVARVGGSGVGELVRGGDVVARTGDDVTLFGGAGAD
Ga0126309_100141851	3300010039	Serpentine Soil	MVAAACALGSGTLGGREKCWPESDRRAASIWRGVLEIDASGGRLNTPEGDAIPLAPGTLRHIVGENGVGELVRGSDVVAKAGDDVTLFGGAGS
Ga0126309_104198062	3300010039	Serpentine Soil	PLIAPAVFLVVAAGCALGSGTLGGREKCWPESDRRAASIWRGVLEIDASGGRLNTPEGDAIPLAPGTLRPIVGENGVGELVRGSDVVAKAGDDVTLFGGAGSDGALVVCAVEEKHSG*
Ga0126310_100440894	3300010044	Serpentine Soil	MPFERRLANALIAACIACAAVGCSPSSGTLGGREKCWPDSAHRAASLWRGILEIDAAGGRLRTPEGEVIPLIAGTLRPQVGAGGVGQLVQGTTVVATAGDDVTLFGGAGSDGALMVCAVEEVH*
Ga0126310_109194442	3300010044	Serpentine Soil	MAIRSVIAAAILLATTTGCSLSGGTLGGREKCWPASPPRGASVWRGVLEIDAGGGRLNTPEGDVIVLLPGALSTRVGPSGRGELVAGNSVVARAGEDVDLFGGMG
Ga0126311_101018042	3300010045	Serpentine Soil	MPFERRLANALIAACIACAAVGCSPSSGTLGGREKCWPDCGDRAASLWRGILEIDAAGGRLRTPEGEVIPLIAGTLRPQVGAGGVGQLVQGTTVVATAGDDVTLFGGAGSDGALMVCAVEEVH*
Ga0126311_116836462	3300010045	Serpentine Soil	LRVGRVSALLLALVAVAASGCALAGGTLGGREKCWPASEQRAPSGWRGILQIDAVGGSLATPEGDVIPLLPGALTMRVGANGVGELVDGDRVVARAGQDVSLFGGAGADGFLVVCAVEEIH*
Ga0134128_109309321	3300010373	Terrestrial Soil	FVMGCSLAGGTLGGREKCWPPSDNRVPSLFRGILRVDAAGGRLATNEGDVIPLKAGALRPVVGTDGTGQLVRGTEMVARAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0134124_118338572	3300010397	Terrestrial Soil	MGDGQRVKTEASRQRNRLGLVLAFALLATVGCSLTGGTLGGREKCWPESDRRAPSIWRGTLQIDGSGARLATPEGDVIPLLPGALTTRIGAGGTGELVKGDQVAAKAGDDVTLFGGAGSDGALVVCGVEEIHTAP*
Ga0134124_124765962	3300010397	Terrestrial Soil	TGLALVGLVLITTVGCSLVGGTLGGREKCWPPEDRRQASIWRGRLQIDASGARLQTPEGDAIPLLPGSLTTRIGASGIGELVSGDRVAAKAGDDVTLFGGAGSDGALVVCAVEEIHSTSQGVR*
Ga0134122_102509632	3300010400	Terrestrial Soil	VSNRGFSVVAAVLLVAFVMGCSLAGGTLGGREKCWPPSDKRVPSLFRGILRVDAAGGRLATNEGDVIPLKAGALRPMVGTDGTGQLVRGTEVVARAGSDVTLFGGAGADGALVVCDVEEVH*
Ga0134122_108003622	3300010400	Terrestrial Soil	MTPRSKVMVVRMARHVHGPRVAVSALALLAMLVASACSVTGGTLGGRDTCWPQSEHRMASIWRGVLRIDASQAELDTPEGDVIPLIAGAIQTRIGEGGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVACAVEEIHGS*
Ga0134121_110015172	3300010401	Terrestrial Soil	MGDGQRVKTEASPQRNRLGLVLACALLATVGCSLAGGTLGGREKCWPETDKRAPSIWRGTLQIDASGARLATPEGVVIPLLPGALTTRIGAEGTGELVKGDQLAAKAGDDVTLFGGAGSDGALVVCGVEEIHTAP*
Ga0134123_108792532	3300010403	Terrestrial Soil	MGDRQRVKTEASRQHHRLGLVFALALLATVGCALTGGTLGGREKCWPESDKRAPSIWRGTLQIDASGARLATPEGDVIPLLPGTLTTRFGASGTGELVKGDQVAAKAGDDVTLFGGAGSDGALVVCGVEEIHTAP
Ga0105246_106878501	3300011119	Miscanthus Rhizosphere	MGDRQRVKTEASRQHHRLGLVLALALLATVGCALTGGTLGGREKCWPESDKRAPSIWRGTLQIDGSGARLATPEGDVIPLLPGALTTRIGAGGIGELVKGDQVAAKAGDDVTLFGGAGSDGALVVCGVEEIHTAP*
Ga0105246_120397301	3300011119	Miscanthus Rhizosphere	VSNRGYSVLAAVLLVAFVTGCSLAGGTLGGREKCWPPSDKRVPSLFRGILRVDAEGGRLATNEGDVIPLKAGALRPVVGADGTGQLVSGLEVVARAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0157308_100771201	3300012910	Soil	VWSAQLVKDGRAAVLAGLLSALLVVAGCSLAGGTLGGRSKCWPETDKRMASLFRGTLVIDESGPRLSTPEGDVIPLRQGTLRGSVAADGTGQLVRGTEVVAKEGDDVTLFGGAGADGALVVCDVEEIH*
Ga0157301_100250091	3300012911	Soil	VWSAQLVKDGRAAVLAGLLSALLVVAGCSLAGGTLGGRSKCWPETDKRTASVFRGILVIDESGPRLSTPEGDVIPLRQGTLRGSVAADGTGQLVRGTEVVAKEGDDVTLFGGAGADGALVVCDV
Ga0164298_102160582	3300012955	Soil	VSNRGYSVLAAVLLVAFVTGCSLAGGTLGGREKCWPPSDKRVPSLFRGILRVDAAGGRLATHEGDVIPLKAGALRPVVGTDGTGQLVRGLEVVARAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0164299_114840801	3300012958	Soil	VSNRGYSVLAAVLLVAFVTGCSLAGGALGGREKCWAPSDKRVPSLFRGILRVDAAGGRLATNEGDVIPLKVGALRPVVGTDGTGQLVRGTEVVARAGSDVTLFVGAGSDGALV
Ga0164302_102961482	3300012961	Soil	MTPRSKVMVVRMARHVHGPRVAVSALALLAMLVASACSVTGGTLGGRDTCWPQSEHRMASIWRGVLRIDASQAELDTPEGDVIPLIEGAIQTRVGEGGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVVCAVEEIHGS*
Ga0153916_106394922	3300012964	Freshwater Wetlands	VSQLCRSLARRGLALALGFALLGTTGCSLETNTLGGREKCWPESPPRAASLWRGILRIDASGGRLETAEGEVIPLLPGALQTRVGAVGIGELIRGADVVAKAGDDVTLFGGAGADGGLVVCAVETIHSSS*
Ga0168316_1047311	3300012981	Weathered Mine Tailings	MPRMTTDRRSRSPIAIMFAVVMAALISGACSIAGGTLGGRDKCWSADDPRMASLWRGTLRIDASGGRLDTPEGDVIPLLPGALQTRLGEGGVGQLVRGGDVIAKTGDDVTLFGGAGSDGA
Ga0164305_117734382	3300012989	Soil	VSNRGFSVVAAVLLVAFVMGCSLAGGTLGGREKCWPPSDKRVPSLFRGILRVDAAGGRLATNEGDVIPLKAGALRPVVGTDGTGQLVRGTEVVARAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0157375_110022591	3300013308	Miscanthus Rhizosphere	VSNRGYSGLAAVLLVAFVTGCSLAGGTLGGREKCWPPSDKRVPSLFRGILRVDAEGGRLATNEGDVIPLKAGALRPVVGADGTGQLVSGLEVVARAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0163163_113917732	3300014325	Switchgrass Rhizosphere	VNTLLTRLIVSPLVGLLLLTTVGCSLAGGTLGGREKCWPPDDRRAASVWRGTLQIDASGARLQTPEGDAIPLLPGTLTTRIGASGLGELVSGDQVAARAGDDVTLFGGAGSDGALVVCAVEEIHSAS*
Ga0157379_103015332	3300014968	Switchgrass Rhizosphere	LLINRILTIALAFIVLTTAGCSLAGGTLGGREKCWAESDRRAASLWRGTLQIDASGARLQTPEGDAIPLLPGALTTRIGAGGIGELVAGDLVVAKAGDDVTLFGGAGSDGALVVCGVEEIHTTP*
Ga0157379_107682562	3300014968	Switchgrass Rhizosphere	MGDGQRVKTDASRQRNRLGLVLAFALLATVGCSLAGGTLGGRAKCWPESDKRAPSVWRGTLQIDGSGARLATPEGDVIPLLPGALTTRIGAGGIGELVKGDQVAAKAGDDVTLFGGAGSDGALVVCGVEEIHTAP*
Ga0173483_103507701	3300015077	Soil	LILAACSLGGGTLGGRQKCWPASESRVPSLFRGILVIDSAGGRLRTSEGEVIPLVAGNLRTQVGPSGTGELVAGTEVVASAGDDVTLFGGAGADGRLIVCAVEEKH*
Ga0173480_103927071	3300015200	Soil	VPFTPRRNIHVHAIAAAAAVLLVAGCGIGSGTLGGQQKCWPESERRMPSLWRGVLRIDVLGGHLDTPEGDTIPLRAGALWTRVGSGGSGELVRGEEVVASAGDDVTLFGGAGSDGALVVCAVEERH*
Ga0132258_114800243	3300015371	Arabidopsis Rhizosphere	VGNRLVNLFVGLLVVVTAGCSIAGGTLGGRQKCWPASDKRMPSLFRGILEVDAAGGRLATAEGEVIPLKAGALRPMVGADGRGQLARGTEVVASAGSDVTLFGGAGSDGALVVCDVEEVH
Ga0132258_114912272	3300015371	Arabidopsis Rhizosphere	VIDRRIRVLAGAFLVALVMGCSLAGGTLGGREKCWPASDKRVPSLFRGILRVDATGGRLATNEGEVIPLKAGALRPVMGADGTGQLVRGTEVVAKAGSDVTLFGGAGSDGALVVCDVEEVH*
Ga0132258_117058472	3300015371	Arabidopsis Rhizosphere	MRRVTRLPTPIALVILTLAIAGCSITGGTLGGRARCWTDTRAASLWRGILRIDASGALLDTPEGEVIPLIAGAVQTRIGDGGIGQLVRGNDVVATAGDDVTLFGGAGSDGALVMCAVEEVHAS*
Ga0132256_1005793152	3300015372	Arabidopsis Rhizosphere	ARRCLIGSVIDRRIRVLAGAFLVALVMGCSLAGGTLGGREKCWPASDKRVPSLFRGILRVDATGGRLATNEGEVIPLKAGALRPVMGADGTGQLVRGTEVVAKAGSDVTLFGGAGADGALVVCDVEEVH*
Ga0132256_1022058661	3300015372	Arabidopsis Rhizosphere	VVNRPVNLFVGLLVVVTAGCSIAGGTLGGRQKCWPASDKRMPSLFRGILEVDAAGGRLATPEGEVIPLKAGALRPMVGADGRGQLARGTEVVASAGSDVTLFGGAGSDGALVVCDVEEVH
Ga0132257_1006420402	3300015373	Arabidopsis Rhizosphere	VGNRLVNLFVGLLVVVTAGCSIAGGTLGGRQKCWPASDKRMPSLFRGILEVDAAGGRLATAEGEVIPLKAGALRPMVGADGRGQLVRGTEVVASAGSDVTLFGGAGSDGALVVCDVEEVH
Ga0190266_100259792	3300017965	Soil	VSFTRSRARHAVAFVAGIALLSSAGCSLAGATLGGREKCWPEDPPRAASIWRGILRIDASGGYLDTPEGDVIPLSPGTLATRVGENGIGELVHDGDVVARAGDDLTLFGGAGADGFLVVCGVEEIHAVT
Ga0184615_100099295	3300018059	Groundwater Sediment	VRRRSRSLARRGLALALGISILGTVGCSLEINALGGREKCWPESPPRASSLWRGILRIDASGGRLETPEGDVIPLLPGTLQTRVGAAGAGELIRGADVVAKAGDDLTLFGGAGSDGGLVVCAVETVHSAS
Ga0190265_104260262	3300018422	Soil	VSLGRRLARAGLTLALGLATLSAVGCSVNTLGGREKCWPESDQRAPSIWRGILVIEASGGRLETPEGDVIPLLPGALEMRVGDAGGGQLVRGAHVVASAGEDVTLFGGAGSDGALVVCGVEEIHGRS
Ga0190275_102156104	3300018432	Soil	MGLERRLGRFIAFPALTIGVSACALGGGMLGGRETCWPDHEQRAARLWRGVLVIDATGSRLHTPEGDVIPLLPGELSMELGDDGSGLLVRGDEVVALAGDDVTLFGGAGADGNLVVCAVEENRGG
Ga0190275_103186411	3300018432	Soil	LALAILALAGCALSGGTLGGREKCWPESDPRMASTWRGILRIDTSGGRLDTPEGEVIPLLPGALTMHGNGDGTGQLLRGDDVVASTGDDVTLFGGAGGDGALVVCGVEEIHAAS
Ga0190274_118137122	3300018476	Soil	TLGGREKCWPASEQRAASLWRGTLRIDAFGGNLDTPEGDVIPLRSGALRTRPGDSGTGELVSAADEVVAKSGDVVTLFGGAGSDGMLVVCAVEAVHARS
Ga0190274_137682181	3300018476	Soil	MGSGTLGGREKCWPESERRAASLWRGILRIDARGGRLDTPEGEAIPLRAGALSILPGAGGGGELLRGSDVIARDGDDVTLFGGAGADGAFVVCAVEENRSAS
Ga0173481_100091314	3300019356	Soil	PLAIAVVLLVAEGCSMAGGTLGGRDKCWPASHHRMPSVWRGILRIDASGGRLETPEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS
Ga0173481_100318742	3300019356	Soil	VKDGRAAVLAGLLSALLVVAGCSLAGGTLGGRSKCWPETDKRMASLFRGILVIDESGPRLSTPEGDVIPLRQGTLRGSVAADGTGQLVRGTEVVAKEGDDVTLFGGAGADGALVVCDVEEIH
Ga0173479_100967012	3300019362	Soil	GRAAVLAGLLSALLVVAGCSLAGGTLGGRSKCWPETDKRMASVFRGILVIDESGPRLSTPEGDVIPLRQGTLRGSVAADGTGQLVRGTEVVAKEGYDVTLFGGAGADGALVVCDVEEIH
Ga0193738_10136235	3300020020	Soil	VSIERRVAIRALALVAGFALLISAGCALGSGTLGGREKCWPESHQRAASIWRGTFRIDASGGWLDTPEGDVIALLPGSIAIRVGDSGVGELVRGDDVVARAGDDLTLFGGAGSDGTLVVCGIEEIHTTS
Ga0247793_10538591	3300023066	Soil	MALRSLAITAVLVLSGCALTGGTLGGRQKCWPEADSRAPSLFRGILVIDSAGGRLRTTEGEIIPLLPGTLRTQVGPSGTGELVRGTEVVATAGDDVTLFGGAGADGRLVVCAVEEKH
Ga0247794_100801312	3300024055	Soil	VKDGRAAVLAGLLSALLVVAGCSLAGGTLGGRSKCWPETDKRMASLFRGTLVIDESGPRLSTPEGDVIPLRQGTLRGSVAADGTGQLVRGTEVVAKEGDDVTLFGGAGADGALVVCDVEEIH
Ga0207695_116011371	3300025913	Corn Rhizosphere	AVVLLVAEGCSMAGGTLGGREKCWPESHHRMPSVWRGILRIDASGGRLETPEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS
Ga0207706_113526522	3300025933	Corn Rhizosphere	VSNRGYSGLAAVLLVAFVTGCSLAGGTLGGREKCWPPSDKRVPSLFRGILRVDAEGGRLATNEGDVIPLKAGALRPVVGADGTGQLVSGLEVVARAGSDVTLFGGAGSDGAVVVCDVEEV
Ga0207669_117890071	3300025937	Miscanthus Rhizosphere	GQGPRPCLRCRDRSPAPGDVKGLVLAVAFLIAGTAGCSLTGGTLGGRERCWPDTDRRAPSLWRGILRIDASGGRLDTPEGDVIPLLPGTLATRVGDTGTGELVRGSDVVAKAGDDVSLFGGAGADGRLVVCAVEENRGDS
Ga0207711_108782032	3300025941	Switchgrass Rhizosphere	CSLAGGTLGGREKCWATSDKRAASVWRGTLQIDASGARLQTPEGDVIPLLPGALTPRIAASGVGELVSGDQVAARAGEDVTLFGGAGSDGALVVCAVEEIHSTSQGVR
Ga0207712_112913621	3300025961	Switchgrass Rhizosphere	LLINRILTIALAFIVLTTAGCSLAGGTLGGREKCWAESDRRAASLWRGTLQIDASGARLQTPEGDAIPLLPGALTTRIGAGGTGELVAGDQVVAKAGDDVTLFGGAGSDGALVVCGVEEIHTTPEE
Ga0207640_112262401	3300025981	Corn Rhizosphere	VPRRRATIVLVHLSRRLMPLAMAVVLLVAEGCSMAGGTLGGREKCWPESHHRMPSVWRGILRIDAYGGRLETSEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS
Ga0207703_109944212	3300026035	Switchgrass Rhizosphere	LTTAGCSLAGGTLGGREKCWATSDKRAASVWRGTLQIDASGARLQTPEGDVIPLLPGALTPRIAASGVGELVSGDQVAARAGEDVTLFGGAGSDGALVVCAVEEIHSTSQGVR
Ga0207641_119465641	3300026088	Switchgrass Rhizosphere	LLSRWIVTLMVGLTLLTTAGCSLAGGTLGGREKCWATSDKRAASVWRGTLQIDASGARLQTPEGDVIPLLPGALTPRIAASGVGELVSGDQVAARAGEDVTLFGGAGSD
Ga0268265_122261901	3300028380	Switchgrass Rhizosphere	LLINRILTIALAFIVLTTAGCSLAGGTLGGREKCWAESDRRAASLWRGTLQIDASGARLQTPEGDAIPLLPGALTTRIGAGGTGELVAGDQVVAKAGDDVTLFGGAGSDGALVVCGVEEIHTTP
Ga0247818_112695172	3300028589	Soil	PRSKVMVVRMARHVHGPRVAVSALALLAMLVASACSVTGGTLGGRDTCWPQSEHRMASIWRGVLRIDASQAELDTPEGDVIPLIAGAIQTRIGEGGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVVCAVEEIHGS
Ga0247826_102493591	3300030336	Soil	MVVRMARHVHGPRVAVSALALLAMLVASACSVTGGTLGGRDTCWPQSEHRMASIWRGVLRIDASQAELDTPEGDVIPLIAGAVETRIGEGGVGQLVRGSDVVATAGQDVTLFGGAGSDGALVVCAVEEIHGS
Ga0247826_117060721	3300030336	Soil	IVLVATSGCSIIGGTLGGRQTCWPEEEQRAPSLWRGILRLDANGDRLETPEGDAIPLVMGDPLSTRLGDDAVVQLVRGSDVVARSGDDVKLFGGAGADGALVVCAVEERHSA
Ga0302046_100578621	3300030620	Soil	QGRSAPNHPASTDRPESGRIRLVRARRLVSPGQALVVCLTLIAAVGCSLTGGTLGGREKCWPEDPPRAASLWRGVLQIDAASAQLNTPEGDVIPLLPGSLQTRAGDDGVGELVSGTDVVARAGDDVTLFGGAGADGALVVCAVEEKH
Ga0308201_102191971	3300031091	Soil	RGLGFALAAALFVSGCALTGGTLGGRGKCWPESDHRAPSLWHGILRIDANGDRLETPEGDVIPIKAGALSIRVSEAGVGQLVSGSDVVAKAGDDVSLFGGAGADGALVVCAVEENRSS
Ga0310813_102201863	3300031716	Soil	LLSRWIVTLMVGLTLLTTAGCSLAGGTLGGREKCWATSDKRAASVWRGTLQIDASGARLQTPEGDVIPLLPGALAPRIAASGVGELVSGDQVAARAGEDVTLFGGAGSDGALVV
Ga0310904_113772002	3300031854	Soil	PGDVKGLVLAVAFLIAGTAGCSLTGGTLGGRERCWPDTDRRAPSLWRGILRIDASGGRLDTPEGDVIPLLPGTLATRVGDTGTGELVRGSDVVAKAGDDVSLFGGAGADGRLVVCAVEENRGDS
Ga0310892_103775331	3300031858	Soil	PFGPFPVPRRRATIVLVHLSRRLMPLAIAVVLLVAEGCSMAGGTLGGREKCWPESHHRMPSVWRGILRIDASGGRLETPEGDVIPLLAGALQTRIGESGVGQLVRGGDVVATAGTDVTLFGGAGADGALVVCGVEEVHAS
Ga0214473_114923691	3300031949	Soil	MRQRSHSLAPHGLVLALGLSLLATAGCSLEPNLLGGREKCWPEGDPRAASLWRGILRIDASGGRLETSEGEVIPLLQGALATRVGAAGVGELIRGADVVAKAGDDVTLFGGAGADGALVVCAIETLHSTSS
Ga0326597_103652552	3300031965	Soil	MLTRRLPRYGLTIALGLALLAVAGCSLVVNTLGGREKCWPESSRRAASVWRGTLRIDASGGSLETPEGDVIPLIPGAIGTRVGERGIGELVRGTDVVAKAGDDVTLFGGAGADGALVVCAVEEVHSSS
Ga0307409_1025132091	3300031995	Rhizosphere	MRRLVALVVAVLIIGGCSLDTNLLGGREKCWPESDSRAASIWRGTLQIDAFGAQLATPEGDVIPLLPGALTTRIGEGGDGQLIRGNDVVARAGDDVTLFG
Ga0310906_108932221	3300032013	Soil	VSRTLGRASRAVAVVAGIAFLSSAGCSLAGGTLGGREKCWPDDPPRAASIWRGILRIDQSGGYLDTPEGEVIPLSPGTLATRVGANGIGELVRGGDVVARAGDDLTLFGGAGADGFLVVCGVEEIHAVT
Ga0307415_1025611051	3300032126	Rhizosphere	VTQPSKAVVRRALAVALVCLVLATAGCSLKPNLLGGREKCWPESPPRAASVWRGILRIDGSGGRLDTPEGVAIPLLPGTLATRVGSGGVGELVLGSDVVAKAGDDVTLFGGAGADGALVVCGVEEIHASS
Ga0214471_100494694	3300033417	Soil	VRARRLVSPGQALVVCLTLIAAVGCSLTGGTLGGREKCWPEDPPRAASLWRGVLQIDAASAQLNTPEGDVIPLLPGSLQTRAGDDGVGELVSGTDVVARAGDDVTLFGGAGADGALVVCAVEEKH
Ga0364925_0430862_107_436	3300034147	Sediment	MSSVGCSVGSGTLGGRERCWPDGDHRAASLWRGILRIDASGGRLETPEGEIIPLRPFALRTRLGDSGRGELFRGADLVAKSGDDVTLFGGAGSVGVLVVCAVEEVHSAT
Ga0364935_0276790_3_284	3300034151	Sediment	MSSVGCSVGSGTLGGRERCWPDGDHRAASLWRGILRIDASGGRLETPEGETIPLRPFALRTRLGDSGRGELVRGADLVAKSGDDVTLFGGAGSV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075762

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences