Metagenome / Metatranscriptome Family F075779

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075779
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	43 residues
Representative Sequence	MMDRERPSASDSEGKIPEAWIGQEVMLETTEALSSDLRAAAP
Number of Associated Samples	58
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.15 %
% of genes near scaffold ends (potentially truncated)	95.76 %
% of genes from short scaffolds (< 2000 bps)	94.92 %
Associated GOLD sequencing projects	58
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.26

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (98.305 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (40.678 % of family members)
Environment Ontology (ENVO)	Unclassified (41.525 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (66.102 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 22.86% β-sheet: 0.00% Coil/Unstructured: 77.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.26
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.26
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF00583	Acetyltransf_1	1.69
PF07883	Cupin_2	1.69
PF00582	Usp	0.85
PF13561	adh_short_C2	0.85
PF01145	Band_7	0.85
PF04542	Sigma70_r2	0.85
PF13302	Acetyltransf_3	0.85
PF01609	DDE_Tnp_1	0.85
PF12728	HTH_17	0.85
PF03992	ABM	0.85
PF05974	DUF892	0.85
PF00313	CSD	0.85
PF13463	HTH_27	0.85
PF02517	Rce1-like	0.85
PF00990	GGDEF	0.85
PF13751	DDE_Tnp_1_6	0.85
PF14329	DUF4386	0.85
PF12697	Abhydrolase_6	0.85
PF08734	GYD	0.85
PF00561	Abhydrolase_1	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.85
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.85
COG1266	Membrane protease YdiL, CAAX protease family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.85
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.85
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.85
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.85
COG3685	Ferritin-like metal-binding protein YciE	Inorganic ion transport and metabolism [P]	0.85
COG4274	Uncharacterized conserved protein, contains GYD domain	Function unknown [S]	0.85
COG4449	Predicted protease, Abi (CAAX) family	General function prediction only [R]	0.85
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.85
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.85
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.85
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	98.31 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	91.53 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	88.98 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	1.69 %
Unclassified	root	N/A	1.69 %

Name	Rank	Taxonomy	Distribution
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	83.05 %
Unclassified	root	N/A	1.69 %
Thermomicrobia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia	0.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.85 %

Name	Rank	Taxonomy	Distribution
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	83.05 %
Unclassified	root	N/A	1.69 %
Sporichthyales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Thermomicrobia incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobia incertae sedis	0.85 %

Name	Rank	Taxonomy	Distribution
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	83.05 %
Unclassified	root	N/A	1.69 %
Thermorudis	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobia incertae sedis → Thermorudis	0.85 %
Sporichthyaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	24.58 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	6.78 %
Unclassified	root	N/A	1.69 %
unclassified Thermorudis	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobia incertae sedis → Thermorudis → unclassified Thermorudis	0.85 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	0.85 %
unclassified Sporichthyaceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	24.58 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	6.78 %
Unclassified	root	N/A	1.69 %
Sporichthyaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	0.85 %
Thermorudis sp.	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobia incertae sedis → Thermorudis → unclassified Thermorudis → Thermorudis sp.	0.85 %
Rubrobacter radiotolerans	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320003\|FACENCT_FZOFKYN02IKTLE	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	537	Open in IMG/M
2119805009\|FNTS007_GKN1E7E02FLLYC	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	544	Open in IMG/M
2119805009\|FNTS007_GKN1E7E02JAYPL	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	500	Open in IMG/M
2119805011\|FNTS010_GJ857YP01DQG9O	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	520	Open in IMG/M
3300000436\|LCrCPGB2_illDRAFT_1021682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1273	Open in IMG/M
3300000789\|JGI1027J11758_13082452	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	814	Open in IMG/M
3300005506\|Ga0068912_10977053	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	599	Open in IMG/M
3300005562\|Ga0058697_10393746	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	685	Open in IMG/M
3300005562\|Ga0058697_10397492	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	682	Open in IMG/M
3300005562\|Ga0058697_10613782	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	569	Open in IMG/M
3300005981\|Ga0081538_10002170	All Organisms → cellular organisms → Bacteria	19458	Open in IMG/M
3300006046\|Ga0066652_101663790	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	583	Open in IMG/M
3300006876\|Ga0079217_11695243	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	508	Open in IMG/M
3300007004\|Ga0079218_11441530	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	739	Open in IMG/M
3300007790\|Ga0105679_10589435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1216	Open in IMG/M
3300009789\|Ga0126307_10313596	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1262	Open in IMG/M
3300009789\|Ga0126307_10374167	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1148	Open in IMG/M
3300009789\|Ga0126307_10894177	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	717	Open in IMG/M
3300009789\|Ga0126307_10959812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	691	Open in IMG/M
3300009789\|Ga0126307_11339619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	580	Open in IMG/M
3300009789\|Ga0126307_11472542	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	552	Open in IMG/M
3300009789\|Ga0126307_11600082	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	529	Open in IMG/M
3300009840\|Ga0126313_10006880	All Organisms → cellular organisms → Bacteria	6907	Open in IMG/M
3300009840\|Ga0126313_10527469	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	947	Open in IMG/M
3300009840\|Ga0126313_10544261	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	932	Open in IMG/M
3300010036\|Ga0126305_10269779	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1099	Open in IMG/M
3300010036\|Ga0126305_10657286	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	707	Open in IMG/M
3300010036\|Ga0126305_10703663	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	683	Open in IMG/M
3300010037\|Ga0126304_10912444	All Organisms → cellular organisms → Bacteria	597	Open in IMG/M
3300010037\|Ga0126304_11273712	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	504	Open in IMG/M
3300010038\|Ga0126315_10119765	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1532	Open in IMG/M
3300010038\|Ga0126315_10122983	Not Available	1513	Open in IMG/M
3300010038\|Ga0126315_10699117	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Sporichthyales → Sporichthyaceae → unclassified Sporichthyaceae → Sporichthyaceae bacterium	662	Open in IMG/M
3300010039\|Ga0126309_10071141	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1721	Open in IMG/M
3300010039\|Ga0126309_10265422	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300010039\|Ga0126309_10271005	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	970	Open in IMG/M
3300010039\|Ga0126309_10864641	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	596	Open in IMG/M
3300010039\|Ga0126309_10941736	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	575	Open in IMG/M
3300010040\|Ga0126308_10258344	All Organisms → cellular organisms → Bacteria	1135	Open in IMG/M
3300010040\|Ga0126308_10263797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1123	Open in IMG/M
3300010040\|Ga0126308_10656486	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	718	Open in IMG/M
3300010040\|Ga0126308_11092116	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	562	Open in IMG/M
3300010040\|Ga0126308_11336894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	509	Open in IMG/M
3300010041\|Ga0126312_10102644	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1956	Open in IMG/M
3300010041\|Ga0126312_10620668	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	778	Open in IMG/M
3300010041\|Ga0126312_10829666	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	672	Open in IMG/M
3300010041\|Ga0126312_10879947	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	652	Open in IMG/M
3300010042\|Ga0126314_10051089	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2685	Open in IMG/M
3300010042\|Ga0126314_10122190	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1792	Open in IMG/M
3300010042\|Ga0126314_10255046	All Organisms → cellular organisms → Bacteria	1245	Open in IMG/M
3300010044\|Ga0126310_10083532	Not Available	1888	Open in IMG/M
3300010044\|Ga0126310_10634930	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	801	Open in IMG/M
3300010044\|Ga0126310_10800314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	725	Open in IMG/M
3300010044\|Ga0126310_11667789	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	528	Open in IMG/M
3300010045\|Ga0126311_10189223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1494	Open in IMG/M
3300010045\|Ga0126311_10277909	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1252	Open in IMG/M
3300010045\|Ga0126311_10721172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	798	Open in IMG/M
3300010045\|Ga0126311_11334296	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	597	Open in IMG/M
3300010045\|Ga0126311_11496164	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	565	Open in IMG/M
3300010166\|Ga0126306_10100512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2090	Open in IMG/M
3300010166\|Ga0126306_10589713	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	885	Open in IMG/M
3300010166\|Ga0126306_10919703	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	710	Open in IMG/M
3300010166\|Ga0126306_11552537	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	550	Open in IMG/M
3300012093\|Ga0136632_10024816	All Organisms → cellular organisms → Bacteria	2693	Open in IMG/M
3300012678\|Ga0136615_10483991	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	532	Open in IMG/M
3300012681\|Ga0136613_10288538	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	911	Open in IMG/M
3300012681\|Ga0136613_10492512	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	664	Open in IMG/M
3300014487\|Ga0182000_10085572	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1027	Open in IMG/M
3300014488\|Ga0182001_10209488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	720	Open in IMG/M
3300014488\|Ga0182001_10544608	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	545	Open in IMG/M
3300017787\|Ga0183260_10558692	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	739	Open in IMG/M
3300017789\|Ga0136617_10340062	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter radiotolerans	1225	Open in IMG/M
3300018432\|Ga0190275_10562172	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1183	Open in IMG/M
3300018432\|Ga0190275_10673597	All Organisms → cellular organisms → Bacteria	1089	Open in IMG/M
3300018432\|Ga0190275_10818087	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	996	Open in IMG/M
3300018432\|Ga0190275_11373942	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	783	Open in IMG/M
3300018432\|Ga0190275_11861338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	680	Open in IMG/M
3300018432\|Ga0190275_13505682	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	508	Open in IMG/M
3300018465\|Ga0190269_10100223	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1418	Open in IMG/M
3300018465\|Ga0190269_10771895	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	686	Open in IMG/M
3300018465\|Ga0190269_10846147	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	666	Open in IMG/M
3300018466\|Ga0190268_11536070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	581	Open in IMG/M
3300018466\|Ga0190268_12095294	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	524	Open in IMG/M
3300018466\|Ga0190268_12241435	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	512	Open in IMG/M
3300018481\|Ga0190271_12306139	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	643	Open in IMG/M
3300018891\|Ga0193610_1091393	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	790	Open in IMG/M
3300018891\|Ga0193610_1136080	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	603	Open in IMG/M
3300018910\|Ga0193598_1047338	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1032	Open in IMG/M
3300018910\|Ga0193598_1105019	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	650	Open in IMG/M
3300018920\|Ga0190273_10413494	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	954	Open in IMG/M
3300018933\|Ga0193614_1028346	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1600	Open in IMG/M
3300018933\|Ga0193614_1109313	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	768	Open in IMG/M
3300018984\|Ga0193605_1155812	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	683	Open in IMG/M
3300019377\|Ga0190264_10069690	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1514	Open in IMG/M
3300019767\|Ga0190267_10018664	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2009	Open in IMG/M
3300019767\|Ga0190267_10204718	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	929	Open in IMG/M
3300019767\|Ga0190267_10286953	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	843	Open in IMG/M
3300019767\|Ga0190267_10859439	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	614	Open in IMG/M
3300019767\|Ga0190267_11331255	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	539	Open in IMG/M
3300027638\|Ga0208612_1033023	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1569	Open in IMG/M
3300028578\|Ga0272482_10253434	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	556	Open in IMG/M
3300028705\|Ga0307276_10041645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	992	Open in IMG/M
3300028721\|Ga0307315_10233305	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	575	Open in IMG/M
3300028744\|Ga0307318_10219756	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	659	Open in IMG/M
3300028744\|Ga0307318_10236221	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	635	Open in IMG/M
3300028810\|Ga0307294_10329616	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	560	Open in IMG/M
3300030988\|Ga0308183_1033148	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	957	Open in IMG/M
3300030988\|Ga0308183_1119100	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	621	Open in IMG/M
3300030988\|Ga0308183_1132832	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	598	Open in IMG/M
3300031450\|Ga0272433_10320818	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	738	Open in IMG/M
3300031995\|Ga0307409_101628872	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	674	Open in IMG/M
3300032002\|Ga0307416_100859647	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1005	Open in IMG/M
3300032126\|Ga0307415_102238358	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	535	Open in IMG/M
3300033989\|Ga0334924_051847	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	532	Open in IMG/M
3300034026\|Ga0334946_016903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1184	Open in IMG/M
3300034132\|Ga0334915_085896	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	649	Open in IMG/M
3300034136\|Ga0334933_075000	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	528	Open in IMG/M
3300034402\|Ga0334960_035314	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Thermomicrobia → Thermomicrobia incertae sedis → Thermorudis → unclassified Thermorudis → Thermorudis sp.	682	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	94.07%
Host-Associated	Host-Associated	5.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	88.14%
Aquatic	Environmental → Aquatic	5.93%
Plants	Host-Associated → Plants	5.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	87.29%
Freshwater	Environmental → Aquatic → Freshwater	5.93%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.54%
Phylloplane	Host-Associated → Plants → Phylloplane	2.54%
Rock-Dwelling (Endoliths)	Environmental → Terrestrial → Rock-Dwelling (Endoliths)	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	73.73%
Sand	Environmental → Terrestrial → Soil → Sand	11.86%
Ice	Environmental → Aquatic → Freshwater → Ice	5.93%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.54%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	2.54%
Soil Crust	Environmental → Terrestrial → Soil → Soil Crust	1.69%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	66.95%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	11.86%
Unclassified	Environmental → Aquatic → Freshwater → Ice → Unclassified	5.93%
Desert	Environmental → Terrestrial → Soil → Unclassified → Desert	2.54%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.54%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	2.54%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.69%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.69%
Unclassified	Environmental → Terrestrial → Soil → Soil Crust → Unclassified	1.69%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.85%
Unclassified	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Roots → Rhizosphere → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	40.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	23.73%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	11.02%
Polar Desert Sand	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert Sand	5.08%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	2.54%
Sub-Biocrust Soil	Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil	2.54%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	2.54%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	2.54%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.69%
Hypolithic Biocrust	Environmental → Terrestrial → Soil → Soil Crust → Unclassified → Hypolithic Biocrust	1.69%
Polar Desert	Environmental → Aquatic → Freshwater → Ice → Unclassified → Polar Desert	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	0.85%
Rock	Environmental → Terrestrial → Rock-Dwelling (Endoliths) → Unclassified → Unclassified → Rock	0.85%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Unclassified → Tabebuia Heterophylla Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320003	Soil microbial communities from sample at FACE Site 4 Nevada Test Site Crust CO2-	Environmental	Open in IMG/M
2119805009	Soil microbial communities from sample at FACE Site NTS_007 Nevada Test Site	Environmental	Open in IMG/M
2119805011	Soil microbial communities from sample at Multiple FACE and OTC sites	Environmental	Open in IMG/M
3300000436	Soil microbial communities from Colorado Plateau, Greene Butte sample - Light Crust, Colorado Plateau, Green Butte	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300005506	Soil microbial communities from Colorado Plateau, USA - Soil Crust after dry out 3A (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300005981	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1	Host-Associated	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006876	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200	Environmental	Open in IMG/M
3300007004	Agricultural soil microbial communities from Utah to study Nitrogen management - NC Compost	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012093	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ611 (21.06)	Environmental	Open in IMG/M
3300012678	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ288 (22.06)	Environmental	Open in IMG/M
3300012681	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ272 (21.06)	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300017787	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ497 (22.06) (version 2)	Environmental	Open in IMG/M
3300017789	Polar desert sand microbial communities from Dry Valleys, Antarctica - metaG UQ322 (21.06)	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018481	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 356 T	Environmental	Open in IMG/M
3300018891	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018910	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 18 hrs after wetting v1	Environmental	Open in IMG/M
3300018920	Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 IS	Environmental	Open in IMG/M
3300018933	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 42 hrs v1	Environmental	Open in IMG/M
3300018984	Soil crust microbial communities from Colorado Plateau, Utah, USA - earlymid stage, 9 hrs after wetting v1	Environmental	Open in IMG/M
3300019377	Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 112 T	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300027638	Polar desert microbial communities from Antarctic Dry Valleys - UQ889 (SPAdes)	Environmental	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028721	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_355	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300028810	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_151	Environmental	Open in IMG/M
3300030988	Metatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_157 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300031450	Rock endolithic microbial communities from Victoria Land, Antarctica - University Valley sud	Environmental	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032126	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2	Host-Associated	Open in IMG/M
3300033989	Biocrust microbial communities from Mojave Desert, California, United States - 20HNC	Environmental	Open in IMG/M
3300034026	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 42SMS	Environmental	Open in IMG/M
3300034132	Biocrust microbial communities from Mojave Desert, California, United States - 11HMC	Environmental	Open in IMG/M
3300034136	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 29HNS	Environmental	Open in IMG/M
3300034402	Sub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACENCTA_724570	2032320003	Soil	MDRERPAAPKGAPIPEAWIGQEVMLETTETLSSDLRAAAPVYLEDV
FNTS007_09528880	2119805009	Soil	MMDRERPAAPQSGPIPEAWIGQEVMIETTEVLSSDLRASAPVY
FNTS007_07245840	2119805009	Soil	MDRERPSASDSEEKIPEAWIGQEVMIETTEVLSSDLRASA
FNTS010_01881100	2119805011	Soil	MDRERPAAPQGGPIPEAWIGQEVMIETTEVLSSDLRAGAPVYLED
LCrCPGB2_illDRAFT_10216823	3300000436	Soil	MMDRERPDATQGGPIPEAWIGREVMIETTEVLSSDLRAG
JGI1027J11758_130824522	3300000789	Soil	MDRERPSASEGSRIPEAWIGQEVMLETTEALSSDLRAA
Ga0068912_109770532	3300005506	Soil	MDRERPAAPKGAPIPEAWIGQEVMLETTETLSSDLRAAAPVYLEDVNERGI
Ga0058697_103937462	3300005562	Agave	MMDRERPSPSDPQGKIPEAWIGQEVMIETTEALSSDLRASA
Ga0058697_103974921	3300005562	Agave	MMDRERPSASDSEGKIPEAWIGQEVMLETTEALSSDLRAAAP
Ga0058697_106137822	3300005562	Agave	MMDRERPRASELKAKIPEAWIGQEVMIETTETLSSDLRASAPVYLEDVNDR
Ga0081538_100021706	3300005981	Tabebuia Heterophylla Rhizosphere	MDRERPGASDSKERIPEAWIGQEVMLETTEALSSDLRAAAPST*
Ga0066652_1016637901	3300006046	Soil	MMDRERPSASDSEGKVPEAWIGQEVMLETTEALSSDLRAAAPVY
Ga0079217_116952431	3300006876	Agricultural Soil	MDRERPGASDSNEIIPEAWIGQEVMIETTEALSSDLRAA
Ga0079218_114415301	3300007004	Agricultural Soil	MMDRERPSASDSEDKIPEAWIGQEVMIETTEVLSSDLRA
Ga0105679_105894351	3300007790	Soil	MDRESASEGRIPEAWIGHEVMLETTEALSSDLRAAAPVYLEDVNDRGVV
Ga0126307_103135962	3300009789	Serpentine Soil	MKDRERPSASDSEGKIPEAWIGQEVMIETTETLSSDLRAAAPVYLEDV
Ga0126307_103741671	3300009789	Serpentine Soil	MDRERPKASHSEQTIPEAWIGQEVMIETTEVLSSDLRASAPVYLED
Ga0126307_108941771	3300009789	Serpentine Soil	MMDRERPSASDSEGKIPEAWIGQEVMIETTESLSSDLRASAPVYLEDVNDK
Ga0126307_109598122	3300009789	Serpentine Soil	MMDRERPRASESEGKIPEAWIGQEVMLETTEALSS
Ga0126307_113396191	3300009789	Serpentine Soil	MDRERLSASDSEGKIPEAWIGQEVMIETTEVLSSDLRASAPVYLED
Ga0126307_114725421	3300009789	Serpentine Soil	MDRERPSASEEKIPEAWIGQEVMLETTETLSSDLRAAAPVYLEDVNDR
Ga0126307_116000821	3300009789	Serpentine Soil	MMDRGRPSASELEGKIPEAWIGQEVMIETTEVLSSDLRAAAAV
Ga0126313_100068801	3300009840	Serpentine Soil	MMDRQRPSASEDSRIPEAWIGQEVMLETTEALSSDLRA
Ga0126313_105274691	3300009840	Serpentine Soil	MMDRERPRASDSEGKIPEAWIGQEVMLETTETLSSDLRAAAPTYL
Ga0126313_105442611	3300009840	Serpentine Soil	MMDRERPSASDSGDKIPEAWIGQEVMIETTEVLSSDLRAAAPVYLEDVN
Ga0126305_102697791	3300010036	Serpentine Soil	MMDRARPSAADSEERIPEAWIGQEVMIETTEVLSSDLRAAAAAYLE
Ga0126305_106572861	3300010036	Serpentine Soil	MMDWERPGASDSKEMIPEACTAQEVMLETTETLSSDLRASAPVYLEDVND
Ga0126305_107036631	3300010036	Serpentine Soil	MDRERPSASDSEETIPEAWIGQEVMIETTEVLSSDLR
Ga0126304_109124441	3300010037	Serpentine Soil	MMDRQRPSASEDSRIPEAWIGQEVMLETTEALSSDLR
Ga0126304_112737121	3300010037	Serpentine Soil	MMDREMPSASEGSRIPEAWIGQEVMLETTEALSSDLRAA
Ga0126315_101197651	3300010038	Serpentine Soil	MDRERPSASDSEGKIPEAWIGQEVMIETTETLSSDL
Ga0126315_101229834	3300010038	Serpentine Soil	MMDRERPSSSESEGKIPEAWIGQEVMIETTEALSSDLRASAPVYLEDVNE
Ga0126315_106991172	3300010038	Serpentine Soil	MDRERPSASEERIPEAWIGQEVMLETTETLSSDLRAAAPVYLEDVNDRGAV
Ga0126309_100711411	3300010039	Serpentine Soil	MMDRERPGAPDSEEKIPEAWIGQEVMLETTEALSSDLRASAPVYLEDVNER
Ga0126309_102654221	3300010039	Serpentine Soil	MMDRERPGASELEGKIPEAWIGQEVMIETTEVLSSDLRAAAAVYLED
Ga0126309_102710052	3300010039	Serpentine Soil	MMDRERPSASDSEGKIPEAWIGQEVMIETTETLSSDL
Ga0126309_108646411	3300010039	Serpentine Soil	MMDRERPRVSNSEGSRIPEAWIGQEVMLETTEALSSDLRAAAPVYLE
Ga0126309_109417361	3300010039	Serpentine Soil	MDRERPRVSDSEETIPEAWIGQEVMIETTEVLSSDLR
Ga0126308_102583441	3300010040	Serpentine Soil	MMDRERPSVSHSEGSKIPEAWIGQEVMLETTEALSSD
Ga0126308_102637971	3300010040	Serpentine Soil	MMDRERPSASEGSRIPEALIGREVMLETTEAHSSDLRTAAPMYLEDVNERGV
Ga0126308_106564862	3300010040	Serpentine Soil	MMDRERPSASDSEDKIPEAWIGQEVMIETTESLSSDLRASAPVYLEDV
Ga0126308_110921161	3300010040	Serpentine Soil	MDRERPSASDLEGKIPEAWIGQEVMIETTEVLSSDLRAAAAVYLEDVN
Ga0126308_113368941	3300010040	Serpentine Soil	MMDRERPSASDSEGKIPEAWIGQEVMLETTEALSSDLRAAAPVYLE
Ga0126312_101026444	3300010041	Serpentine Soil	MMDRERPRASDSEENIPEAWIGQEVMIETTETLSSDLRAAAPVYLE
Ga0126312_106206681	3300010041	Serpentine Soil	MKDRERPSASDSEGKIPEAWIGQEVMIETTETLSSDLRA
Ga0126312_108296661	3300010041	Serpentine Soil	MDRARQSSVEGKIPEVWIGQEVMLETTEALSSDLR
Ga0126312_108799471	3300010041	Serpentine Soil	MMDRERPSASDSEGRIPEAWIGQEVMIETTEVLSSDLRAS
Ga0126314_100510893	3300010042	Serpentine Soil	MDRERPRTSDSKEMIPEAWIGREVMIETTEALSSDLRAA
Ga0126314_101221904	3300010042	Serpentine Soil	MMDRERLSDSELEGEIPEAWIGQEVMSGTTEALSSDLGASAPSTWRT*
Ga0126314_102550463	3300010042	Serpentine Soil	MMDRERPSSSESEGKIPEAWIGQEVMIETTEALSSDLRASAPVYLE
Ga0126310_100835323	3300010044	Serpentine Soil	MDRERASASEAKIPEAWIGQEVMIETTEALSSDLRAAAPVYLE
Ga0126310_106349302	3300010044	Serpentine Soil	MDREGPSASEGSRIPEAWIGQEVMIETTEALSSDLRAAAPVYL
Ga0126310_108003141	3300010044	Serpentine Soil	MDRARQSGVEGKIPEAWIGQEVMLETTEALSSDLRAAAPVYL
Ga0126310_116677892	3300010044	Serpentine Soil	MMDRERPSASNSEGKIPEAWIGQEVMLETTEALSS
Ga0126311_101892234	3300010045	Serpentine Soil	MMDRERPSASELEAKIPEAWIGQEVMLETTETLSSDLRASAPTYLEDVNER
Ga0126311_102779091	3300010045	Serpentine Soil	MDRERLSASDSEGKIPEAWIGQEVMIETTEVLSSDLRASAPVYL
Ga0126311_107211721	3300010045	Serpentine Soil	MDRERASASEAKIPEAWIGQEVMIETTEALSSDLRAAAPVYLEEVNDKG
Ga0126311_113342961	3300010045	Serpentine Soil	MMDRQRPSASEDSRIPEAWIGQEVMLETTEALSSDLRAAAPVYLEDVNERG
Ga0126311_114961641	3300010045	Serpentine Soil	MDRERLSASDSEGTIPEAWIGQEVMIETTEVLSSDLRASAPVY
Ga0126306_101005121	3300010166	Serpentine Soil	MMDRERPSASDAEGKIPEAWIGQEVMLETTETLSSDLR
Ga0126306_105897131	3300010166	Serpentine Soil	MMDRERPSASEGSRIPEALIGQEVMLETTEALSSDLRTAAPMY
Ga0126306_109197032	3300010166	Serpentine Soil	MMDRERPRASDAEGKIPEAWIGQEVMIETTEVLSSDLRASAPVYLED
Ga0126306_115525371	3300010166	Serpentine Soil	MMDRERPSASELEEKIPEAWIGQEVMLETTEALSSDLRAAAPVYLE
Ga0136632_100248165	3300012093	Polar Desert Sand	MMDRERPSATDSKGKIPEAWIGQEVMIETTEVLSSDLRASAP
Ga0136615_104839911	3300012678	Polar Desert Sand	MDREKPDVAEGKIPEAWIGRQVMLETTEALSSDLRAAAP
Ga0136613_102885381	3300012681	Polar Desert Sand	LREPKKKRELVMDRERPSASDSKGKIPEAWIGQEVMIETTEVLSSDLRAAAAVYLED
Ga0136613_104925122	3300012681	Polar Desert Sand	MMDRERPSASDSEEKIPEAWIGQEVMIETTEVLSSDLRASAPVYLE
Ga0182000_100855722	3300014487	Soil	MMDREWPSGAEGKIPEAWIGQEVMLETTEALSSDLRAAAP
Ga0182001_102094881	3300014488	Soil	VPLKEEAMMDRERPSASELEGKIPEAWIGQEVMIETTEALSSDLRASAPVYLEDVND
Ga0182001_105446081	3300014488	Soil	MMDRERPSASDSEGKIPEAWIGLEVMIETTETLSSDLRAAAPVYLEDVNDRG
Ga0183260_105586921	3300017787	Polar Desert Sand	MMDREKPDVAEGKIPEAWIGRQVMLETTEALSSDLRAAAPVYLED
Ga0136617_103400622	3300017789	Polar Desert Sand	MMDREKPGASEGKIPEAWIGKEVMLETTEALSSDLRAAAPVYLEDVNERVS
Ga0190275_105621721	3300018432	Soil	MMDRERPGASGSEAKIPEAWIGQEVMLETTEALSSDLRAAAPVYLEDVNERGI
Ga0190275_106735973	3300018432	Soil	MMDRGKPSASDSDSEEKIPEAWIGQEVMIETTEALSSDLRASAPV
Ga0190275_108180871	3300018432	Soil	MMDRERPSASDSEQRIPEAWIGQEVMIETTEVLSSDLRAAAAAY
Ga0190275_113739421	3300018432	Soil	MMDRERPRASDSEDKIPEAWIGQEVMLETTDTLSSDLRVSAPVYLVYLDDVN
Ga0190275_118613381	3300018432	Soil	MMDRGKPSASDSEEKIPEAWIGQEVMIETTEALSSDL
Ga0190275_135056822	3300018432	Soil	MDRERHSSSDSEGKIPEAWIGQEVMLETTEVLSSDLRA
Ga0190269_101002232	3300018465	Soil	MLDRERPRASDSEGKIPEAWIGQEVMIETTEVLSSDLRAAAAVYLEDV
Ga0190269_107718951	3300018465	Soil	MMDRERPSASDSEDQIPEAWIGQEVMIETTETLSSDL
Ga0190269_108461471	3300018465	Soil	MDRERPGASELEGKIPEAWIGQEVMIETTEVLSSDLRAS
Ga0190268_115360701	3300018466	Soil	MDRERPSASELEGKIPEAWIGQEVMIETSEVLSSDLRAA
Ga0190268_120952941	3300018466	Soil	MMDRETPSASDSEGKIPEAWIGQEVMIETTEVLSSDLRASAPVYLE
Ga0190268_122414351	3300018466	Soil	MMDRERSSASDSKEMIPEAWIGQEVMLETTETLSSD
Ga0190271_123061391	3300018481	Soil	MMDRERPSASDSEEKIPEAWIGQEVMIETTEVLSSDLRASAPYT
Ga0193610_10913931	3300018891	Soil	MDRERPGASDSEGRIPEAWIGREVMIETTEALSSDLRAAA
Ga0193610_11360801	3300018891	Soil	MNRKRPKASDSQKTIPEAWIGQQVMLETTEALSTDLRAAPPC
Ga0193598_10473381	3300018910	Soil	MMDRERPGASDTGGRIPEAWIGQEVMIETTEVLSSDLRAAA
Ga0193598_11050191	3300018910	Soil	MDREKPAAPQGGPIPEAWIGQEVMIETTEVLSSDLRASAPVYLE
Ga0190273_104134942	3300018920	Soil	MMDRERPSASDSEEKIPEAWIGQEVMIETTETLSSDLRASAPVY
Ga0193614_10283464	3300018933	Soil	MDRERPAAPQGGPIPEAWIGQEVMIETTEVLSSDLRA
Ga0193614_11093132	3300018933	Soil	MMDRERPAAPQGGPIPEAWIGQEVMIETTEVLSSDLRASAPVYLED
Ga0193605_11558121	3300018984	Soil	MMDRERPAAPQGGPIPEAWIGQEVMIETTEVLSSDLRAS
Ga0190264_100696903	3300019377	Soil	MMDKERPSASDSEQRIPEAWIGQEVMIETTEVLSSDL
Ga0190267_100186645	3300019767	Soil	MMDREKPRASDSEGKIPEAWIGQEVMLETTETLSSDLRAAAPTYLE
Ga0190267_102047183	3300019767	Soil	VGSRMMERERPKASDSKETIPEAWIGQEVMLETTEALSSDLRASAP
Ga0190267_102869531	3300019767	Soil	MDRERPRGASDSEQTIPEAWIGQEVMIETTESLSSDLRA
Ga0190267_108594392	3300019767	Soil	MDRERASASEAKIPEAWIGQEVMIETTEALSSDLRVAAPVYL
Ga0190267_113312552	3300019767	Soil	MMDRERPVASDSQGKIPEAWIGQEVMLETTESLSSDLRAAAPVYLEDVN
Ga0208612_10330231	3300027638	Polar Desert	MDRERPSASDSEGKIPEAWIGQEVMIETTEVLSSDLRASAPVYLEDVNERG
Ga0272482_102534341	3300028578	Soil	MMDRERPSASDSEEKIPEAWIGQEVMIETTEVLSSDLRASAP
Ga0307276_100416451	3300028705	Soil	MMDRERPNASDSEGKIPEAWIGQEVMLETTEALSSDLRASA
Ga0307315_102333051	3300028721	Soil	MIDRERPSASELEGKIPEAWIGQEVMIETTEVLSSDLRAAAAVYLEDVNDRG
Ga0307318_102197561	3300028744	Soil	MMDRERPRDSEGKIPEAWIGQEVMLETTEALSSDLRAAAP
Ga0307318_102362211	3300028744	Soil	MKDRERPSASDSEGKIPEAWIGQEVMIETTEVLSSDLR
Ga0307294_103296161	3300028810	Soil	MMDREGPSAPASEEKIPEAWIGQEVMLETTEVLSSDLR
Ga0308183_10331481	3300030988	Soil	MMDREKPSSLDSEEKIPEAWIGQEVMLETTEVLSSDLRAAA
Ga0308183_11191001	3300030988	Soil	MDKERPGASDSKEMIPEAWIGQEVMLETTEALSSDLRAAS
Ga0308183_11328322	3300030988	Soil	MDRERPGASDSKETIPEAWIGQEVMLETTEALSSDLRAAA
Ga0272433_103208181	3300031450	Rock	MDREKPDVAEGKIPEAWIGRQVMLETTEALSSDLRAAAPV
Ga0307409_1016288721	3300031995	Rhizosphere	MMDRERPSASDSEGRIPEAWIGQEVMIETTEVLSSD
Ga0307416_1008596471	3300032002	Rhizosphere	MMDRERPSASDSEDKIPEAWIGQEVMIETTEVLSSDLRASAPVYLED
Ga0307415_1022383582	3300032126	Rhizosphere	MMDRERPRASDSEENIPEAWIGQEVMIETTETLSSDLRAA
Ga0334924_051847_395_532	3300033989	Hypolithic Biocrust	MDRERPKASDSQETIPEAWIGQQVMLETTEALSTDLRAAAPVYLED
Ga0334946_016903_1035_1184	3300034026	Sub-Biocrust Soil	MGRERPKASDSQETIPEAWIGQQVMLETTEALSTDLRAAAPVYLEDVNER
Ga0334915_085896_502_648	3300034132	Hypolithic Biocrust	MMDRERPGAPNSEVRIPEAWIGQEVMLETTEALSSDLRAAAPVYLEDVN
Ga0334933_075000_379_528	3300034136	Sub-Biocrust Soil	MIDREGPRASDSETKIPEVWIGQEVMIETTEALSSDLRASAPVYLKDVNE
Ga0334960_035314_570_680	3300034402	Sub-Biocrust Soil	MMDRERPRVSNSEGRIPEAWIGQVVMLETTEALSSDL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F075779

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences