Metagenome Family F075887

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075887
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	56 residues
Representative Sequence	MAARTTAVVSFAICFIFGVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLSNRFFGALA
Number of Associated Samples	89
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	67.52 %
% of genes near scaffold ends (potentially truncated)	94.92 %
% of genes from short scaffolds (< 2000 bps)	92.37 %
Associated GOLD sequencing projects	86
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.33

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (55.085 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (30.508 % of family members)
Environment Ontology (ENVO)	Unclassified (42.373 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (50.847 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 50.00% β-sheet: 0.00% Coil/Unstructured: 50.00%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.33
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.33
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF04392	ABC_sub_bind	2.54
PF09992	NAGPA	2.54
PF04325	DUF465	2.54
PF00383	dCMP_cyt_deam_1	1.69
PF13763	DUF4167	1.69
PF03401	TctC	0.85
PF08238	Sel1	0.85
PF05598	DUF772	0.85
PF00027	cNMP_binding	0.85
PF00890	FAD_binding_2	0.85
PF02195	ParBc	0.85
PF05694	SBP56	0.85
PF13692	Glyco_trans_1_4	0.85
PF00871	Acetate_kinase	0.85
PF02735	Ku	0.85
PF13442	Cytochrome_CBB3	0.85
PF07366	SnoaL	0.85
PF03466	LysR_substrate	0.85
PF05425	CopD	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.54
COG0282	Acetate kinase	Energy production and conversion [C]	0.85
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.85
COG1276	Putative copper export protein	Inorganic ion transport and metabolism [P]	0.85
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.85
COG3426	Butyrate kinase	Energy production and conversion [C]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	55.08 %
Unclassified	root	N/A	44.92 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	55.08 %
Unclassified	root	N/A	44.92 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	55.08 %
Unclassified	root	N/A	44.92 %

Name	Rank	Taxonomy	Distribution
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	45.76 %
Unclassified	root	N/A	44.92 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.92 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	43.22 %
Chloroflexi	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi	0.85 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.92 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	22.03 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.63 %
unclassified Chloroflexi	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi	0.85 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.85 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.95 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.08 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	4.24 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	2.54 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %
Alcaligenaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.95 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.08 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	3.39 %
unclassified Hyphomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae	2.54 %
Pigmentiphaga	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	44.92 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	16.95 %
Alphaproteobacteria bacterium 13_2_20CM_2_64_7	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	5.08 %
Hyphomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	2.54 %
Bradyrhizobium erythrophlei	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	0.85 %
Pigmentiphaga humi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga humi	0.85 %
Chloroflexi bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000754\|JGI11851J11668_1002722	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	723	Open in IMG/M
3300000837\|AP72_2010_repI_A100DRAFT_1004273	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	2016	Open in IMG/M
3300000955\|JGI1027J12803_100095700	Not Available	673	Open in IMG/M
3300004479\|Ga0062595_101960491	Not Available	564	Open in IMG/M
3300004633\|Ga0066395_10403785	Not Available	770	Open in IMG/M
3300005179\|Ga0066684_10523752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	795	Open in IMG/M
3300005332\|Ga0066388_101308030	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1250	Open in IMG/M
3300005332\|Ga0066388_103557141	Not Available	795	Open in IMG/M
3300005332\|Ga0066388_104057368	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Alcaligenaceae → Pigmentiphaga → Pigmentiphaga humi	747	Open in IMG/M
3300005445\|Ga0070708_100860622	Not Available	851	Open in IMG/M
3300005445\|Ga0070708_101876627	Not Available	556	Open in IMG/M
3300005471\|Ga0070698_100762998	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	910	Open in IMG/M
3300005518\|Ga0070699_100064416	All Organisms → cellular organisms → Bacteria → Proteobacteria	3179	Open in IMG/M
3300005518\|Ga0070699_101358699	Not Available	652	Open in IMG/M
3300005552\|Ga0066701_10316591	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	967	Open in IMG/M
3300005713\|Ga0066905_100314315	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1236	Open in IMG/M
3300005713\|Ga0066905_102274958	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	506	Open in IMG/M
3300005764\|Ga0066903_100171147	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	3177	Open in IMG/M
3300005764\|Ga0066903_101078438	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → unclassified Chloroflexi → Chloroflexi bacterium	1478	Open in IMG/M
3300005764\|Ga0066903_105108061	Not Available	695	Open in IMG/M
3300005764\|Ga0066903_105705572	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	654	Open in IMG/M
3300006797\|Ga0066659_10543276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	937	Open in IMG/M
3300006845\|Ga0075421_101483487	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	742	Open in IMG/M
3300009100\|Ga0075418_11204612	Not Available	821	Open in IMG/M
3300009162\|Ga0075423_10796617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1000	Open in IMG/M
3300009792\|Ga0126374_10235076	Not Available	1185	Open in IMG/M
3300009792\|Ga0126374_10259236	All Organisms → cellular organisms → Bacteria	1140	Open in IMG/M
3300009792\|Ga0126374_11039663	Not Available	645	Open in IMG/M
3300009792\|Ga0126374_11564475	Not Available	543	Open in IMG/M
3300010041\|Ga0126312_10904083	Not Available	643	Open in IMG/M
3300010048\|Ga0126373_10711104	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1063	Open in IMG/M
3300010048\|Ga0126373_12559424	Not Available	569	Open in IMG/M
3300010304\|Ga0134088_10397257	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	672	Open in IMG/M
3300010358\|Ga0126370_10183453	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1563	Open in IMG/M
3300010359\|Ga0126376_12214392	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	595	Open in IMG/M
3300010360\|Ga0126372_11143814	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	799	Open in IMG/M
3300010361\|Ga0126378_10697102	Not Available	1127	Open in IMG/M
3300010361\|Ga0126378_12493851	Not Available	591	Open in IMG/M
3300010366\|Ga0126379_11145143	All Organisms → cellular organisms → Bacteria	884	Open in IMG/M
3300010376\|Ga0126381_101660588	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	923	Open in IMG/M
3300012199\|Ga0137383_10116145	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1950	Open in IMG/M
3300012205\|Ga0137362_10925893	Not Available	744	Open in IMG/M
3300012208\|Ga0137376_11283802	Not Available	622	Open in IMG/M
3300012355\|Ga0137369_10144601	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1895	Open in IMG/M
3300012362\|Ga0137361_10200866	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1803	Open in IMG/M
3300012362\|Ga0137361_11440628	Not Available	612	Open in IMG/M
3300012923\|Ga0137359_11721779	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	514	Open in IMG/M
3300012948\|Ga0126375_10643605	All Organisms → cellular organisms → Bacteria	817	Open in IMG/M
3300012955\|Ga0164298_11373276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	545	Open in IMG/M
3300015371\|Ga0132258_13537907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1069	Open in IMG/M
3300015373\|Ga0132257_100186015	Not Available	2453	Open in IMG/M
3300016341\|Ga0182035_10766232	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	845	Open in IMG/M
3300016357\|Ga0182032_10219817	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1458	Open in IMG/M
3300016371\|Ga0182034_10507233	Not Available	1007	Open in IMG/M
3300016387\|Ga0182040_10669146	Not Available	846	Open in IMG/M
3300016445\|Ga0182038_11483052	Not Available	609	Open in IMG/M
3300016445\|Ga0182038_12038527	Not Available	520	Open in IMG/M
3300018072\|Ga0184635_10360878	Not Available	556	Open in IMG/M
3300018468\|Ga0066662_11783597	Not Available	644	Open in IMG/M
3300019361\|Ga0173482_10371801	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	655	Open in IMG/M
3300019886\|Ga0193727_1072250	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1063	Open in IMG/M
3300020581\|Ga0210399_10443102	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1082	Open in IMG/M
3300025910\|Ga0207684_10134293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2124	Open in IMG/M
3300025915\|Ga0207693_10721934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	771	Open in IMG/M
3300025939\|Ga0207665_11392542	Not Available	558	Open in IMG/M
3300026551\|Ga0209648_10255900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1292	Open in IMG/M
3300027874\|Ga0209465_10104705	All Organisms → cellular organisms → Bacteria	1389	Open in IMG/M
3300027874\|Ga0209465_10674169	Not Available	508	Open in IMG/M
3300028705\|Ga0307276_10174731	Not Available	556	Open in IMG/M
3300028755\|Ga0307316_10147146	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	838	Open in IMG/M
3300028787\|Ga0307323_10222236	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	681	Open in IMG/M
3300028828\|Ga0307312_10450599	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	847	Open in IMG/M
3300028828\|Ga0307312_10473687	All Organisms → cellular organisms → Bacteria	826	Open in IMG/M
3300031152\|Ga0307501_10045443	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	963	Open in IMG/M
3300031543\|Ga0318516_10286837	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	951	Open in IMG/M
3300031545\|Ga0318541_10002272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7445	Open in IMG/M
3300031545\|Ga0318541_10161547	All Organisms → cellular organisms → Bacteria	1233	Open in IMG/M
3300031546\|Ga0318538_10601617	Not Available	596	Open in IMG/M
3300031561\|Ga0318528_10482865	Not Available	665	Open in IMG/M
3300031573\|Ga0310915_10302423	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1130	Open in IMG/M
3300031682\|Ga0318560_10161847	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1187	Open in IMG/M
3300031736\|Ga0318501_10198644	Not Available	1048	Open in IMG/M
3300031744\|Ga0306918_10769301	Not Available	752	Open in IMG/M
3300031768\|Ga0318509_10840398	Not Available	507	Open in IMG/M
3300031770\|Ga0318521_10150952	Not Available	1319	Open in IMG/M
3300031770\|Ga0318521_10756201	Not Available	591	Open in IMG/M
3300031770\|Ga0318521_11020249	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	507	Open in IMG/M
3300031778\|Ga0318498_10167156	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium 13_2_20CM_2_64_7	1000	Open in IMG/M
3300031779\|Ga0318566_10192281	Not Available	1013	Open in IMG/M
3300031821\|Ga0318567_10811276	Not Available	530	Open in IMG/M
3300031832\|Ga0318499_10232761	Not Available	716	Open in IMG/M
3300031833\|Ga0310917_10316139	Not Available	1057	Open in IMG/M
3300031833\|Ga0310917_10415720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	914	Open in IMG/M
3300031890\|Ga0306925_10115322	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2870	Open in IMG/M
3300031890\|Ga0306925_10390395	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1492	Open in IMG/M
3300031941\|Ga0310912_10466673	Not Available	984	Open in IMG/M
3300031941\|Ga0310912_10789938	All Organisms → cellular organisms → Bacteria	733	Open in IMG/M
3300031942\|Ga0310916_10191833	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1706	Open in IMG/M
3300031942\|Ga0310916_10520124	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1013	Open in IMG/M
3300031942\|Ga0310916_11589181	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	531	Open in IMG/M
3300031945\|Ga0310913_10681256	Not Available	727	Open in IMG/M
3300031946\|Ga0310910_10157810	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium erythrophlei	1739	Open in IMG/M
3300031954\|Ga0306926_10285048	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2045	Open in IMG/M
3300032001\|Ga0306922_10792447	All Organisms → cellular organisms → Bacteria	991	Open in IMG/M
3300032001\|Ga0306922_11567536	Not Available	656	Open in IMG/M
3300032001\|Ga0306922_11606747	Not Available	646	Open in IMG/M
3300032025\|Ga0318507_10110259	Not Available	1154	Open in IMG/M
3300032051\|Ga0318532_10106535	Not Available	989	Open in IMG/M
3300032052\|Ga0318506_10186021	Not Available	915	Open in IMG/M
3300032052\|Ga0318506_10213146	Not Available	853	Open in IMG/M
3300032059\|Ga0318533_10240976	Not Available	1303	Open in IMG/M
3300032059\|Ga0318533_11137662	Not Available	571	Open in IMG/M
3300032060\|Ga0318505_10576021	Not Available	529	Open in IMG/M
3300032068\|Ga0318553_10652636	All Organisms → cellular organisms → Bacteria	550	Open in IMG/M
3300032076\|Ga0306924_11741811	Not Available	651	Open in IMG/M
3300032094\|Ga0318540_10643770	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300032261\|Ga0306920_100760749	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → unclassified Hyphomicrobiaceae → Hyphomicrobiaceae bacterium	1424	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	95.76%
Host-Associated	Host-Associated	4.24%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	94.92%
Plants	Host-Associated → Plants	4.24%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	94.92%
Rhizosphere	Host-Associated → Plants → Rhizosphere	2.54%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.12%
Loam	Environmental → Terrestrial → Soil → Loam	17.80%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	2.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	44.07%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	27.12%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.17%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	6.78%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	5.08%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	2.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.69%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	30.51%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	12.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	11.86%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	10.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.63%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	6.78%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.39%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	2.54%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	1.69%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	1.69%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000754	Amended soil microbial communities from Kansas Great Prairies, USA - acetate Total DNA F2.4TB	Environmental	Open in IMG/M
3300000837	Forest soil microbial communities from Amazon forest - Pasture72 2010 replicate I A100	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005179	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_133	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005445	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005552	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_150	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006797	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108	Environmental	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010304	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_5_09182015	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300012199	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_R_40_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012208	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage2_L_20_16 metaG	Environmental	Open in IMG/M
3300012355	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_113_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012955	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_216_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015373	Combined assembly of cpr5 rhizosphere	Host-Associated	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300019361	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)	Environmental	Open in IMG/M
3300019886	Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? H2c2	Environmental	Open in IMG/M
3300020581	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-M	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025939	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes)	Environmental	Open in IMG/M
3300026551	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300028705	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_115	Environmental	Open in IMG/M
3300028755	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_356	Environmental	Open in IMG/M
3300028787	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_381	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031779	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f22	Environmental	Open in IMG/M
3300031821	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032025	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032052	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f19	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032068	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f21	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032094	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f25	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI11851J11668_10027221	3300000754	Soil	MAMAARTTAVVSFAICFIFGVGCCWRGAVANGGGSCGGCVDNGSSCGVAFKLSNRFFGALAGAR
AP72_2010_repI_A100DRAFT_10042736	3300000837	Forest Soil	MAARTTAIVSFAIFFIFGVGCSWRGAVAGCGSWGGCVDNGSSCGVVLKLSNRFF
JGI1027J12803_1000957001	3300000955	Soil	MAARTTAVVSFAICFIFVGCSWRGAVANNGSGGGCVNNGGSCGVVLKLSNRFFGA
Ga0062595_1019604912	3300004479	Soil	MAARTTAIVSFAIFFIFGVGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRFFGALAG
Ga0066395_104037851	3300004633	Tropical Forest Soil	MAARTTAIATFAILFIFGVGCSWRGAVAGCSPWGGCVDNGSSCGVVLKLSNRFFGALAGARFFFG
Ga0066684_105237523	3300005179	Soil	MPARTTAVISFAIRFIFGEGCSWRGAVTNGGSRSGADNGSSCGVVLELSNRFFGALA
Ga0066388_1013080303	3300005332	Tropical Forest Soil	MAARTTAVVSFAICFIFGVGCSWLGAVANGGSWGGCVDNVGSCGVVLKLSNRFFGALAGVRFF
Ga0066388_1035571411	3300005332	Tropical Forest Soil	MAMAARTTAVVSFAICFVFCVDCSWRGAVANGGGSWGGCVDNGSSCGVAFKL
Ga0066388_1040573681	3300005332	Tropical Forest Soil	MAARTTAVKSFAICFILVGCSWRGAVPNSGFWGGCVNNGGSCGVVLKLSNRFFGALA
Ga0070708_1008606221	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAARTTAIVSFAIFFIFGVGCSWRGAVAGCGPWGGCVDNGSSCGVVLKLSNRFFGALP
Ga0070708_1018766272	3300005445	Corn, Switchgrass And Miscanthus Rhizosphere	MAARTTAVVSFAIFFIFGAGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRFFGAL
Ga0070698_1007629983	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	MAARTTAIVSFAIFFIFGVGCSWRGAVAGCGPWGGCVDNGSSCGVVLKLSNRFFGALAGARFFF
Ga0070699_1000644163	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAARTTAVVSFAIFFIFGVGCSWRGAVANGGSWGGCVDKESSCGGVLKLSNRFFGGGTTRS*
Ga0070699_1013586992	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	MAARTTAIVSFAIFFIFGVGCSWRGAVAGCGPWGGCVDNGSSCGVVLKLSNRFFGAL
Ga0066701_103165911	3300005552	Soil	MAMAARTTAVVSFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSN
Ga0066905_1003143151	3300005713	Tropical Forest Soil	MAMAARTTAVVSFAICFIFCVDCSWLGAVANGGGSWGACVDNGSSCGVAFKLSNRFFGALAG
Ga0066905_1022749581	3300005713	Tropical Forest Soil	MAARTTAIVSFAIFFIFDVGCSWRGAVAGCGSWGGCVDNGSSCGVVLKLSNRFFGAL
Ga0066903_1001711471	3300005764	Tropical Forest Soil	MTIAMAARRTAVVSFAIFFIFGVGRSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRFFGALAGAR
Ga0066903_1010784384	3300005764	Tropical Forest Soil	MAARTTAVVSFAIFFIFGVGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSN
Ga0066903_1051080613	3300005764	Tropical Forest Soil	MAARTTAIVSFAIFFIFGVGCSWRGAVAGCGPWGGCVDNGSSCGVVLKLSNRF
Ga0066903_1057055722	3300005764	Tropical Forest Soil	MAARTTAVVSFAIFFIFGVGCSWRGAVANGGSWGGCVDNGSSCGAVLKLSNRF
Ga0066659_105432761	3300006797	Soil	MAARITAVVSFAICFSFGVGCSWRGPVANGGSWGGCVDNAGSCGVVLKLSNRFFGAL
Ga0075421_1014834872	3300006845	Populus Rhizosphere	MAMAARTTAVVSFAICFIFGVGCFWRGAVANGGGSCGGCVDNGSSCGVAFKLSNRFF
Ga0075418_112046121	3300009100	Populus Rhizosphere	FAICFIFGVGCCWRGAVANGSGSCGCSVDNGSFCGVALKLSNRFFGALAGARKRACFLDFAR*
Ga0075423_107966171	3300009162	Populus Rhizosphere	MAMAARTTAVVSFAICFIFGVGCSWRGAVDNGGGPWGGCVDNGSSCDVSSKLSNRFFGALAGAR
Ga0126374_102350761	3300009792	Tropical Forest Soil	MAARTTAVVSFAIFFIFGVGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRFFGALAGA
Ga0126374_102592361	3300009792	Tropical Forest Soil	MAARTTAVVSFAICFILGVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLSNRFFGA
Ga0126374_110396632	3300009792	Tropical Forest Soil	MAARTTAIVSFAIFFIFDVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLS
Ga0126374_115644752	3300009792	Tropical Forest Soil	MAARTTAVVSFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVVLKLSNRFFGALAG
Ga0126312_109040831	3300010041	Serpentine Soil	MAMAARTTAVVSFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGALAGARFF
Ga0126373_107111043	3300010048	Tropical Forest Soil	MAARTTAIVSFAIFFIFGVGCSWRGAVVGCGSWGGCVDNGSSCGVVLKL
Ga0126373_125594241	3300010048	Tropical Forest Soil	MAMAARTTAVVSFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFK
Ga0134088_103972571	3300010304	Grasslands Soil	MAARTTAVVSFAICFIFGVVCSWRGAVANGGSWDGCVDNAGSCGVVL
Ga0126370_101834531	3300010358	Tropical Forest Soil	MAARTTAVVSFAICFIFRVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLSNR
Ga0126376_122143922	3300010359	Tropical Forest Soil	MAARRTAVVSFAIFFIFDVGCSWRGAVANGGSCAGCVDNGRSCGAALQLSNRFLGALAGL
Ga0126372_111438141	3300010360	Tropical Forest Soil	MAARTTAVVSFAIFFIFDVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLSNRFFGA
Ga0126378_106971021	3300010361	Tropical Forest Soil	MAARTTAVVSFAICFIFGVGCSWRGAVPNGGFWGGCVDNAGSCGVVLK
Ga0126378_124938511	3300010361	Tropical Forest Soil	MAARTTAVVSFAIFFIFGVGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRFFGALAGARFFF
Ga0126379_111451432	3300010366	Tropical Forest Soil	MAARTTAVVSFVIFFIFGVGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRFFGALAG
Ga0126381_1016605881	3300010376	Tropical Forest Soil	MAMAAKTTAVASFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFK
Ga0137383_101161451	3300012199	Vadose Zone Soil	MAAKTTAVVSFAICFILRVGCSWRGAVANGGSWGGCVGNGASCGVVLKLSNRFF
Ga0137362_109258931	3300012205	Vadose Zone Soil	MAARTTAVVSFGIFFIFGVRCSWRGAVATGGSWGGCVDNVSSCIAVLRLANRIFR
Ga0137376_112838021	3300012208	Vadose Zone Soil	MAARTTAVVSFATCFIFGVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLSNRFFGALAGVRFFF
Ga0137369_101446011	3300012355	Vadose Zone Soil	MAAKTTAVVSFAICFILRVGCSWRGAVANGGSWGGCVGNGASCGVVLKLSNRFFGALAGA
Ga0137361_102008661	3300012362	Vadose Zone Soil	MAARTTAVVSFAICFIFGVGCSWRGALANGGSWGGCVDNAGSCGVVLKLSNRFFGALAGV
Ga0137361_114406281	3300012362	Vadose Zone Soil	MAARTTAVVSFAIFFIFGAGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRFFGALAG
Ga0137359_117217791	3300012923	Vadose Zone Soil	MAARTTAVVSFAICFIFGVGCSWRGALANGGSWGGCVDNAGSCGVVLKLSNRFFGALAGVRF
Ga0126375_106436052	3300012948	Tropical Forest Soil	MAARTTAVVSFAICFIFGVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLSDRFFGALAGV
Ga0164298_113732761	3300012955	Soil	MAARTTTVVSFAICFILGVDCSSRGAGANGSSWGGCVDNGGTCGVGLKLSNRL
Ga0132258_135379071	3300015371	Arabidopsis Rhizosphere	MAMAARTTAVVSFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGALAGA
Ga0132257_1001860155	3300015373	Arabidopsis Rhizosphere	MAATTTAVVSFTILFIFGVGCSWRGAVGNGGSWGGCVDNGSSCGVVLKLSNRFFGA
Ga0182035_107662323	3300016341	Soil	MAMAARTIAVVSFAICFIFGVGCSWRGTVANGGGSWGGCVDNGSSCGVAFKLSNRFFGAL
Ga0182032_102198171	3300016357	Soil	MAMAARTTAVVSFPICFIFGVDCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGAL
Ga0182034_105072332	3300016371	Soil	MIARTTAIESFAIFFIFGVGCSWRGAVAGCGSWGGCVDNGSSCGVVLKLSNRFFGALAGARAF
Ga0182040_106691461	3300016387	Soil	MAMAARTTAVVSFAICAAANGGGSRGGCVDNGSSCGVVLKLSNR
Ga0182038_114830521	3300016445	Soil	MAMAARTTAVVSFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRF
Ga0182038_120385272	3300016445	Soil	MAARTTAVVSFAICLIFGVDCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRF
Ga0184635_103608782	3300018072	Groundwater Sediment	MAARTTAVVNFAICFIFGVGCSWRGAVANGGSWDGCVDNAGFCGVVLKLSNHFFGALA
Ga0066662_117835972	3300018468	Grasslands Soil	MAARTTAVVSFAICFILGVDCCSRGAVANGGSWGTCVDNGGFSGAVWKLSDRFFGTV
Ga0173482_103718011	3300019361	Soil	MAARTTTVVSFAICFILGVDCSSRGAGANGGSWGGCVDNDGTCGVGLKLSNR
Ga0193727_10722501	3300019886	Soil	MAARTTAVVNFAICFIFGVGCSWRGAVANGGSWDGCVDNAGSCGVVLKL
Ga0210399_104431023	3300020581	Soil	MAARTTAVVSFAICFIFGVRCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGALAGARF
Ga0207684_101342934	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	MAMAARTTAVVSFAICFIFGVRCSWRGAVANGGGSWGGCVDNGSSCDVAFKL
Ga0207693_107219341	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MAARTTAVVSFAICFILGVDCFSRGAFANGGTWGGRVDNGGTCGVGAKLSNRSLGAL
Ga0207665_113925422	3300025939	Corn, Switchgrass And Miscanthus Rhizosphere	MAARTTAVVSFAICFIFGVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLSNRFFGALA
Ga0209648_102559001	3300026551	Grasslands Soil	MAMAARTTAVVSFAICFIFGVRCSWRGAVANGGGSWGGRVDNGSSCGVAFKLSNRFFGAL
Ga0209465_101047051	3300027874	Tropical Forest Soil	MAARTTAVVSFAICFILGVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLS
Ga0209465_106741691	3300027874	Tropical Forest Soil	MAMAAKTTAVASFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGARWSTLFLRFPS
Ga0307276_101747311	3300028705	Soil	MAARTTAVVNFAICFIFGVGCSWRGAVANGGPWGGCVDNAGSCGVVLKLSNRFFGALAG
Ga0307316_101471461	3300028755	Soil	MAARTTAVVNFAICFIFGVGCSWRGAVANGGSWDGCVDNAGFCGVVLKLSNH
Ga0307323_102222362	3300028787	Soil	MAARTTAVVSFAIRFIFGVGCSWRGAVANGGSRGGCDDSGRSCGVVLELSNRFFGAL
Ga0307312_104505993	3300028828	Soil	MAARTTAVVNFAICFIFGVGCSWRGAVANGGSWDGCVDNAGSCGVVLKLSNR
Ga0307312_104736871	3300028828	Soil	MAARTTAVVSFAIFFIFGVGCSWRGAVANGGSWGGCVGNGSSCGVVLKLSNRFFGALAEARFF
Ga0307501_100454433	3300031152	Soil	MAARTTAVVNFAICFIFGVGCSWRGAVANGGSWDGCVDNAGSCGVVLKLSNRFFGALAGV
Ga0318516_102868371	3300031543	Soil	MAARTTAVVSFAIFFIFDVGCSWRGAVANGGSWGGCVDNAGSCGVVLK
Ga0318541_100022728	3300031545	Soil	MAARTTAVVSFAIFFIFDVGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRFIRALA
Ga0318541_101615474	3300031545	Soil	MAARTTAVVSFAICFIFGVGCSSRGAVANGGSWGGCVDNAGSCGVVLKLSNRFF
Ga0318538_106016171	3300031546	Soil	MAARTTAVVSFAICFIFGVGCSSRGAVANGGSWGGCVDNAGSCGVVLKL
Ga0318528_104828651	3300031561	Soil	MAARTTAIVSFAIFFIFGVGCSWRGAVAGCGSWGGCVDNGSSCGVVLKLS
Ga0310915_103024231	3300031573	Soil	MAARTTAIATFAILFIFGVGCSWRGAVAGWGPWGGCVDNGSSCGVVLKLSNPFFDALA
Ga0318560_101618471	3300031682	Soil	MAARTTAVVSFAIFFIFDVGCSWRGAVANGGSWGGCVDNGGSCGVVLKLSNRFFGALAG
Ga0318501_101986441	3300031736	Soil	MAARTTAVVSFALCFIFGVGCSWRAAVANGGSWGGCVDNAGSCGVVLK
Ga0306918_107693012	3300031744	Soil	MIARTTAIVSFAIFFIFGVGCSWRGAVAGCGSWGGCVDNGSSCGVVLKLSNRFFGALAGA
Ga0318509_108403981	3300031768	Soil	MAARTTAVVSFAICFIFGVGCSRRGAVANGGSWGGCVDNAGSCGGVLKLSN
Ga0318521_101509523	3300031770	Soil	MAARTTAVVSFAICFIFGVDCSWRGAVANGGGSWDGCVGNGSSCGVAFKLSNRFFG
Ga0318521_107562011	3300031770	Soil	MAMAARTTAVVSFAICAAANGGGSRGGCVDNGSSCGVVLKLSNRFFG
Ga0318521_110202491	3300031770	Soil	MAAMTTAVVSFAICLIFGVGCSWRGVFANGGSWGGCVDAGGSCGVVLK
Ga0318498_101671563	3300031778	Soil	MAARTTAVVSFAIFFIFDVGCSWRGAVANGGSWGGCVDNAGSCGVVLKLSNRFFGALAGPRFF
Ga0318566_101922812	3300031779	Soil	MAARTTAVVSFAICFIFGVGCSWRAAVANGGSWGGCVDNAGSCGVVLKLSNRFFGALAGVRFF
Ga0318567_108112761	3300031821	Soil	MAMAARTTAVVSFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFGAL
Ga0318499_102327611	3300031832	Soil	MAARTTAVVSFAIFFIFDVGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSNRLFGA
Ga0310917_103161393	3300031833	Soil	MAARTTAVVSFAIFFIFGVGCSWRGDVANGGSWGGCVDNGSSCGVVLKLSN
Ga0310917_104157201	3300031833	Soil	MAARTTAVVSFAICLIFGVDCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNR
Ga0306925_101153225	3300031890	Soil	MAARTTAVVSFAIFFIFDVGCSWRGGVANGGSWGGCVDNRSSCGVVLKLSNRFFGALA
Ga0306925_103903953	3300031890	Soil	AIATFAILFIFGVGCSWRGAVAGCGPWGGCVDNGSSCGVVLKLSNPFFDALA
Ga0318536_100755661	3300031893	Soil	MAARTTAVVSFAICFIFGVGCSWRAAVANGGSCGGCVDNAGSCGVVLK
Ga0310912_104666732	3300031941	Soil	MAMAARTTAVVSFAICFIFGVGCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGALAGAR
Ga0310912_107899381	3300031941	Soil	MAARTTAVVSFAICFIFGVGCSWRGTVANGSSWGGCVDNAGSCGVVLKLSNRFFGALA
Ga0310916_101918333	3300031942	Soil	MAARTTAVVSFAICFIFGVGCSWRGTVANGSSWGGCVDNAGSCGVVLKLSNRFFGALAGV
Ga0310916_105201241	3300031942	Soil	MAARTTAVVSFAICFIFGVGCSWRGAVANGSSWDGCVDNAGSCGVVSKLSNRFFG
Ga0310916_115891812	3300031942	Soil	MAARTTAVVSFAIFFIFGVGCSWRGAVANGGSWGGCVDNGSSCGVVLKLSK
Ga0310913_106812562	3300031945	Soil	MATRTTAVVSFAIFFVFDVGCSWRGAVANGGSWGGCVDNAGPCGVVLKLSN
Ga0310910_101578101	3300031946	Soil	MAARTTAVVSFAICFIFGVGCSWRGTVANGSSWGGCVDNAGSCGVVLKLSNRFF
Ga0306926_102850485	3300031954	Soil	MAARTTAVVSFAIFFIFDVGCSWRGAVANGGSWGGCVDNRSSCGVVLKLSNRFFGALA
Ga0306922_107924471	3300032001	Soil	MAMAARTTAVVSFAICFIFGVRCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGAL
Ga0306922_115675361	3300032001	Soil	MAARTTAIVSFAIFFIFGLGCSWRGAVVGCGSWGGCVDNGRSCGVVLKLSNRF
Ga0306922_116067471	3300032001	Soil	MAARTTAVVSFAICLIFGVDCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGALAG
Ga0318507_101102591	3300032025	Soil	MAARTTAVVSFAICFIFGVGCSWRAAVANGGSWGGCVDNAGSCGVVLKLSN
Ga0318532_101065351	3300032051	Soil	MAARTTAVVSFAICFIFGVDCSWRGAVANGGGSWDGCVGNGSSCGVAFKLSNRFFGALAGARFF
Ga0318506_101860211	3300032052	Soil	MAMAARTTAVVSFVICLIFGVDCSWRGAVANGAGSWGDCVDNGSSCGVALKL
Ga0318506_102131461	3300032052	Soil	MAMAARTTAVVSFAICFIFGVDCSWRGAVANGGGSWDGCVGNGSSCGVAFKLSNHF
Ga0318533_102409761	3300032059	Soil	MAMAARTTAVVSFAICFIFGVDCSWRGAVANGGGSWDGCVGNGSSCGVAFKLSNHFF
Ga0318533_111376622	3300032059	Soil	MAARTTAVVSFAIFFIFGVGCSWRGAVAGCGSWGGCVDSGSSCGVVLKLSNRFFGALAGA
Ga0318505_105760212	3300032060	Soil	MAMAARTTAVVSFAICFIFGVDCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGALAGARFF
Ga0318553_106526361	3300032068	Soil	MAARTTAVISFAICFIFGVGCSWRGAVANGGSWGGCVDNAGSCGVVFKLSNRFFGALAG
Ga0306924_117418112	3300032076	Soil	MAMAARTTAVVSFAICFIFGVDCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFF
Ga0318540_106437701	3300032094	Soil	MAMAARTTAVVSFAICFIFGVRCSWRGAVANGGGSWGGCVDNGSSCGVAFKLSNRFFGALAGA
Ga0306920_1007607493	3300032261	Soil	TIAMAARTTAIVSFAIFFIFGVGCSWRGAVAGWGPWGGCVDNGSSCGVVLKLSNPFFDAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075887

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences