Metagenome Family F075907

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F075907
Family Type	Metagenome
Number of Sequences	118
Average Sequence Length	46 residues
Representative Sequence	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHEL
Number of Associated Samples	90
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	99.15 %
% of genes near scaffold ends (potentially truncated)	98.31 %
% of genes from short scaffolds (< 2000 bps)	93.22 %
Associated GOLD sequencing projects	82
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (95.763 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (27.119 % of family members)
Environment Ontology (ENVO)	Unclassified (48.305 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (61.017 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 36.99% β-sheet: 0.00% Coil/Unstructured: 63.01%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF01656	CbiA	6.78
PF12728	HTH_17	3.39
PF00589	Phage_integrase	3.39
PF14659	Phage_int_SAM_3	2.54
PF00239	Resolvase	2.54
PF07677	A2M_recep	2.54
PF08843	AbiEii	1.69
PF01738	DLH	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.54
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	2.54
COG2253	Predicted nucleotidyltransferase component of viral defense system	Defense mechanisms [V]	1.69

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	95.76 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	25.42 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	22.88 %
Unclassified	root	N/A	4.24 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	22.88 %
Unclassified	root	N/A	4.24 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2088090014\|GPIPI_16880676	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1143	Open in IMG/M
3300000734\|JGI12535J11911_1012074	All Organisms → cellular organisms → Bacteria	712	Open in IMG/M
3300001867\|JGI12627J18819_10414597	All Organisms → cellular organisms → Bacteria	549	Open in IMG/M
3300004633\|Ga0066395_10769563	All Organisms → cellular organisms → Bacteria	576	Open in IMG/M
3300005557\|Ga0066704_10482561	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	818	Open in IMG/M
3300005560\|Ga0066670_11039863	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300005598\|Ga0066706_10783043	All Organisms → cellular organisms → Bacteria	754	Open in IMG/M
3300005764\|Ga0066903_105997197	All Organisms → cellular organisms → Bacteria	637	Open in IMG/M
3300006046\|Ga0066652_101279685	All Organisms → cellular organisms → Bacteria	692	Open in IMG/M
3300006796\|Ga0066665_10349344	All Organisms → cellular organisms → Bacteria	1206	Open in IMG/M
3300006804\|Ga0079221_10892850	All Organisms → cellular organisms → Bacteria	651	Open in IMG/M
3300007265\|Ga0099794_10026821	All Organisms → cellular organisms → Bacteria	2667	Open in IMG/M
3300009792\|Ga0126374_11869759	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300010048\|Ga0126373_10948610	All Organisms → cellular organisms → Bacteria	925	Open in IMG/M
3300010303\|Ga0134082_10550767	All Organisms → cellular organisms → Bacteria	508	Open in IMG/M
3300010337\|Ga0134062_10061482	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1551	Open in IMG/M
3300010361\|Ga0126378_10256144	All Organisms → cellular organisms → Bacteria	1845	Open in IMG/M
3300010376\|Ga0126381_100823151	All Organisms → cellular organisms → Bacteria	1334	Open in IMG/M
3300010376\|Ga0126381_100944930	All Organisms → cellular organisms → Bacteria	1242	Open in IMG/M
3300010398\|Ga0126383_13351531	All Organisms → cellular organisms → Bacteria	523	Open in IMG/M
3300012205\|Ga0137362_11268854	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	622	Open in IMG/M
3300012918\|Ga0137396_10129070	All Organisms → cellular organisms → Bacteria → Acidobacteria	1828	Open in IMG/M
3300012918\|Ga0137396_10294881	All Organisms → cellular organisms → Bacteria	1199	Open in IMG/M
3300012927\|Ga0137416_11228539	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300015356\|Ga0134073_10019751	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1605	Open in IMG/M
3300016270\|Ga0182036_10140766	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1704	Open in IMG/M
3300016294\|Ga0182041_10441495	All Organisms → cellular organisms → Bacteria	1116	Open in IMG/M
3300016341\|Ga0182035_10018995	All Organisms → cellular organisms → Bacteria → Acidobacteria	4229	Open in IMG/M
3300016341\|Ga0182035_10212491	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1538	Open in IMG/M
3300016341\|Ga0182035_10464418	All Organisms → cellular organisms → Bacteria	1075	Open in IMG/M
3300016357\|Ga0182032_10161204	All Organisms → cellular organisms → Bacteria	1670	Open in IMG/M
3300016357\|Ga0182032_10484073	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1015	Open in IMG/M
3300016357\|Ga0182032_10673398	All Organisms → cellular organisms → Bacteria	866	Open in IMG/M
3300016371\|Ga0182034_10192576	All Organisms → cellular organisms → Bacteria	1570	Open in IMG/M
3300016387\|Ga0182040_10176151	All Organisms → cellular organisms → Bacteria	1550	Open in IMG/M
3300016387\|Ga0182040_10705776	All Organisms → cellular organisms → Bacteria	825	Open in IMG/M
3300016404\|Ga0182037_10186669	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1596	Open in IMG/M
3300016422\|Ga0182039_10694674	Not Available	896	Open in IMG/M
3300016422\|Ga0182039_10738485	All Organisms → cellular organisms → Bacteria	870	Open in IMG/M
3300016445\|Ga0182038_10524039	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1014	Open in IMG/M
3300016445\|Ga0182038_10682349	All Organisms → cellular organisms → Bacteria	893	Open in IMG/M
3300017933\|Ga0187801_10393363	All Organisms → cellular organisms → Bacteria	575	Open in IMG/M
3300017947\|Ga0187785_10174113	All Organisms → cellular organisms → Bacteria	920	Open in IMG/M
3300018058\|Ga0187766_10837953	All Organisms → cellular organisms → Bacteria	645	Open in IMG/M
3300018086\|Ga0187769_11277127	All Organisms → cellular organisms → Bacteria	555	Open in IMG/M
3300018090\|Ga0187770_10261506	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1342	Open in IMG/M
3300018090\|Ga0187770_10981918	All Organisms → cellular organisms → Bacteria	679	Open in IMG/M
3300018090\|Ga0187770_10987125	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300018468\|Ga0066662_10423023	All Organisms → cellular organisms → Bacteria	1181	Open in IMG/M
3300021444\|Ga0213878_10355868	All Organisms → cellular organisms → Bacteria	633	Open in IMG/M
3300021476\|Ga0187846_10229343	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	774	Open in IMG/M
3300021479\|Ga0210410_10756966	All Organisms → cellular organisms → Bacteria	855	Open in IMG/M
3300021560\|Ga0126371_10202170	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2083	Open in IMG/M
3300021560\|Ga0126371_10671311	All Organisms → cellular organisms → Bacteria	1185	Open in IMG/M
3300021560\|Ga0126371_11925814	All Organisms → cellular organisms → Bacteria	710	Open in IMG/M
3300021560\|Ga0126371_12505854	All Organisms → cellular organisms → Bacteria	624	Open in IMG/M
3300026342\|Ga0209057_1031326	All Organisms → cellular organisms → Bacteria	2785	Open in IMG/M
3300026823\|Ga0207759_100978	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2644	Open in IMG/M
3300026845\|Ga0207760_104662	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1192	Open in IMG/M
3300026847\|Ga0207802_1006396	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1084	Open in IMG/M
3300026895\|Ga0207758_1001633	All Organisms → cellular organisms → Bacteria	2482	Open in IMG/M
3300026928\|Ga0207779_1012536	All Organisms → cellular organisms → Bacteria	1158	Open in IMG/M
3300026928\|Ga0207779_1039055	All Organisms → cellular organisms → Bacteria	546	Open in IMG/M
3300026982\|Ga0207854_1040854	All Organisms → cellular organisms → Bacteria	572	Open in IMG/M
3300026997\|Ga0207784_1026055	All Organisms → cellular organisms → Bacteria	603	Open in IMG/M
3300027003\|Ga0207722_1015250	All Organisms → cellular organisms → Bacteria	864	Open in IMG/M
3300027643\|Ga0209076_1042924	All Organisms → cellular organisms → Bacteria	1275	Open in IMG/M
3300027643\|Ga0209076_1173227	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300027674\|Ga0209118_1048757	All Organisms → cellular organisms → Bacteria	1256	Open in IMG/M
3300027703\|Ga0207862_1021940	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1908	Open in IMG/M
3300027824\|Ga0209040_10295587	All Organisms → cellular organisms → Bacteria	791	Open in IMG/M
3300030707\|Ga0310038_10373386	All Organisms → cellular organisms → Bacteria	626	Open in IMG/M
3300031057\|Ga0170834_103718919	All Organisms → cellular organisms → Bacteria	952	Open in IMG/M
3300031546\|Ga0318538_10802881	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300031573\|Ga0310915_10434018	Not Available	933	Open in IMG/M
3300031573\|Ga0310915_10520994	All Organisms → cellular organisms → Bacteria	844	Open in IMG/M
3300031573\|Ga0310915_10634319	Not Available	756	Open in IMG/M
3300031668\|Ga0318542_10021984	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2639	Open in IMG/M
3300031679\|Ga0318561_10489235	All Organisms → cellular organisms → Bacteria	677	Open in IMG/M
3300031680\|Ga0318574_10240376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1046	Open in IMG/M
3300031681\|Ga0318572_10708219	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300031681\|Ga0318572_10887307	All Organisms → cellular organisms → Bacteria	530	Open in IMG/M
3300031744\|Ga0306918_11503786	All Organisms → cellular organisms → Bacteria	514	Open in IMG/M
3300031748\|Ga0318492_10667740	All Organisms → cellular organisms → Bacteria	556	Open in IMG/M
3300031754\|Ga0307475_10143802	All Organisms → cellular organisms → Bacteria → Acidobacteria	1890	Open in IMG/M
3300031754\|Ga0307475_10399494	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1105	Open in IMG/M
3300031768\|Ga0318509_10830221	All Organisms → cellular organisms → Bacteria	511	Open in IMG/M
3300031771\|Ga0318546_10600910	All Organisms → cellular organisms → Bacteria	774	Open in IMG/M
3300031781\|Ga0318547_10228310	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1118	Open in IMG/M
3300031833\|Ga0310917_10317663	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1055	Open in IMG/M
3300031833\|Ga0310917_10589427	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300031846\|Ga0318512_10737912	All Organisms → cellular organisms → Bacteria	506	Open in IMG/M
3300031879\|Ga0306919_10617767	All Organisms → cellular organisms → Bacteria	836	Open in IMG/M
3300031879\|Ga0306919_11013782	Not Available	634	Open in IMG/M
3300031893\|Ga0318536_10516401	All Organisms → cellular organisms → Bacteria	600	Open in IMG/M
3300031910\|Ga0306923_11374121	All Organisms → cellular organisms → Bacteria	745	Open in IMG/M
3300031912\|Ga0306921_10297202	All Organisms → cellular organisms → Bacteria	1891	Open in IMG/M
3300031941\|Ga0310912_10026260	All Organisms → cellular organisms → Bacteria	3914	Open in IMG/M
3300031941\|Ga0310912_10409769	All Organisms → cellular organisms → Bacteria	1055	Open in IMG/M
3300031941\|Ga0310912_10637115	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	828	Open in IMG/M
3300031942\|Ga0310916_10527341	All Organisms → cellular organisms → Bacteria	1006	Open in IMG/M
3300031942\|Ga0310916_11057934	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300031946\|Ga0310910_10534438	All Organisms → cellular organisms → Bacteria	930	Open in IMG/M
3300031946\|Ga0310910_10992008	All Organisms → cellular organisms → Bacteria	657	Open in IMG/M
3300031946\|Ga0310910_11483203	All Organisms → cellular organisms → Bacteria	520	Open in IMG/M
3300031947\|Ga0310909_11019674	All Organisms → cellular organisms → Bacteria	675	Open in IMG/M
3300031954\|Ga0306926_10326832	All Organisms → cellular organisms → Bacteria	1897	Open in IMG/M
3300031954\|Ga0306926_11120664	All Organisms → cellular organisms → Bacteria	929	Open in IMG/M
3300032001\|Ga0306922_11989909	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300032042\|Ga0318545_10065292	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1247	Open in IMG/M
3300032051\|Ga0318532_10285266	All Organisms → cellular organisms → Bacteria	586	Open in IMG/M
3300032064\|Ga0318510_10361809	Not Available	613	Open in IMG/M
3300032065\|Ga0318513_10688748	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300032076\|Ga0306924_11989539	All Organisms → cellular organisms → Bacteria	599	Open in IMG/M
3300032261\|Ga0306920_100785114	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1399	Open in IMG/M
3300032892\|Ga0335081_10864716	All Organisms → cellular organisms → Bacteria	1071	Open in IMG/M
3300033158\|Ga0335077_10393326	All Organisms → cellular organisms → Bacteria	1491	Open in IMG/M
3300033289\|Ga0310914_10420091	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1210	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	98.31%
Aquatic	Environmental → Aquatic	1.69%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	97.46%
Freshwater	Environmental → Aquatic → Freshwater	1.69%
Cave	Environmental → Terrestrial → Cave	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	77.97%
Loam	Environmental → Terrestrial → Soil → Loam	12.71%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	6.78%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	1.69%
Unclassified	Environmental → Terrestrial → Cave → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	51.69%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.64%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.71%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	6.78%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	6.78%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Unclassified	Environmental → Terrestrial → Cave → Unclassified → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	27.12%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	11.02%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	8.47%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.93%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	5.93%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	5.08%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Grasslands Soil	2.54%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	1.69%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.69%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Bulk Soil	0.85%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Biofilm	Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2088090014	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000734	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005557	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_153	Environmental	Open in IMG/M
3300005560	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_119	Environmental	Open in IMG/M
3300005598	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006046	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_101	Environmental	Open in IMG/M
3300006796	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_114	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300007265	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010303	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_40cm_5_09182015	Environmental	Open in IMG/M
3300010337	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Rain_20cm_2_09082015	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012918	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czcobulk3.16 metaG	Environmental	Open in IMG/M
3300012927	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015356	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - 15_D_Wat_20cm_5_24_1 metaG	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300017933	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_1	Environmental	Open in IMG/M
3300017947	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0815_BV2_4_20_MG	Environmental	Open in IMG/M
3300018058	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_QUI02_MP05_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018090	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018468	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_111	Environmental	Open in IMG/M
3300021444	Vellozia epidendroides bulk soil microbial communities from rupestrian grasslands, the National Park of Serra do Cipo, Brazil - BS_R02	Environmental	Open in IMG/M
3300021476	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300026342	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_146 (SPAdes)	Environmental	Open in IMG/M
3300026823	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 19 (SPAdes)	Environmental	Open in IMG/M
3300026845	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 24 (SPAdes)	Environmental	Open in IMG/M
3300026847	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 20 (SPAdes)	Environmental	Open in IMG/M
3300026895	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 12 (SPAdes)	Environmental	Open in IMG/M
3300026928	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 44 (SPAdes)	Environmental	Open in IMG/M
3300026982	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 7 (SPAdes)	Environmental	Open in IMG/M
3300026997	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 66 (SPAdes)	Environmental	Open in IMG/M
3300027003	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 26 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027674	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)	Environmental	Open in IMG/M
3300027703	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 81 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300030707	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_4_PS metaG (v2)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031680	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031748	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031768	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031846	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032042	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f26	Environmental	Open in IMG/M
3300032051	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033158	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.1	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
GPIPI_00453690	2088090014	Soil	MRKHRIERNLAFPTEQFRARVRAAAKERGFRSEQAFILTACE
JGI12535J11911_10120742	3300000734	Tropical Forest Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRDDRTDAN
JGI12627J18819_104145972	3300001867	Forest Soil	MRKHRIERNLAFPTEQFRARVRAAAKERGFRSEQAFILTACENEVRRG
Ga0066395_107695632	3300004633	Tropical Forest Soil	MRKRRIERNLAFPSEEFRKKVRTAAKGRGFRTEQAFILAACQNELERGDNNEA
Ga0066704_104825611	3300005557	Soil	MKKHRIERNLLFPSREFRDRVRSAASERGFRSERAF
Ga0066670_110398632	3300005560	Soil	MKKHRIERNFLFPSREFRDRVRSAASERGFRSEQAFILTACE
Ga0066706_107830431	3300005598	Soil	MKKHRIERNLLFPSKEFRDRVRSAASERGFRSEQAFILTACE
Ga0066903_1059971971	3300005764	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAF
Ga0066652_1012796851	3300006046	Soil	MKKHRIERNLLFPSREFRDRVRSAASERGFRSEQAFILT
Ga0066665_103493441	3300006796	Soil	MKKHRIERNLLFPSREFRDRVRSAATERGFRSEQAFILTA
Ga0079221_108928502	3300006804	Agricultural Soil	MAKQRTERNLLFPSKDFRDRVRSAAKERGFRSEQAFILAACQNE
Ga0099794_100268212	3300007265	Vadose Zone Soil	MRKHRIERNLAFPTEKFRQQIRSAAKERGFRSEQAFILCGL*
Ga0126374_118697591	3300009792	Tropical Forest Soil	KERSIMRKQRIERNLLLASMEFRDRVRAPAKQRGFRSEQAFILAAC*
Ga0126373_109486101	3300010048	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAA
Ga0134082_105507671	3300010303	Grasslands Soil	MKKHRIERNFLFPSREFRDRVRSAASERGFRSEQA
Ga0134062_100614823	3300010337	Grasslands Soil	MRKRRIERNLAFPSEEFRTKVRTAAKNRGFRTEQAF
Ga0126378_102561444	3300010361	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGDNTEAM
Ga0126381_1008231511	3300010376	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQA
Ga0126381_1009449301	3300010376	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAAC
Ga0126383_133515311	3300010398	Tropical Forest Soil	MRKRRIERNLAFPSEEFRKKVRTAAKGRGFRTEQAFILAACQNELERGDNNEATTQ
Ga0137362_112688541	3300012205	Vadose Zone Soil	MVKQRNERNLLFPSKEFRDRVRSAAKERGFRSEQAFIL
Ga0137396_101290704	3300012918	Vadose Zone Soil	MPKHRIERNLAFPTEEFRRQIRSAARERGFRSEQAFILAACENELKRGDSTEA
Ga0137396_102948811	3300012918	Vadose Zone Soil	MKKQRIERNLLFPSREFRDRVRSAASERGIRSEQAF
Ga0137416_112285391	3300012927	Vadose Zone Soil	MRKHRIERNLAFPTEKFRQQIRSAAKERGFRSEQAFILAACK
Ga0134073_100197513	3300015356	Grasslands Soil	MRKRRIERNLAFPTEEFRRRLRTAAKERGFRTEQAFILAACENELK
Ga0182036_101407664	3300016270	Soil	MRKHRIERNLAFPSEEFRAKVRTASKQRGFRTEQAFLIAACEHELERGD
Ga0182041_104414951	3300016294	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAAC
Ga0182035_100189951	3300016341	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEH
Ga0182035_102124915	3300016341	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRDSRTDANSQ
Ga0182035_104644181	3300016341	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHE
Ga0182032_101612041	3300016357	Soil	MRKRRIERNLAFPSEEFRAKVRNAAKDRGYRTEQA
Ga0182032_104840732	3300016357	Soil	MRKHRIERNLAFPSEEFRARVRTAAKQRGFRTEQAFLIAACE
Ga0182032_106733981	3300016357	Soil	MKKERTERNLLFPNTEFRNRIRTAAKERGFRSEQAFILAACENELERGDSNE
Ga0182034_101925761	3300016371	Soil	MRKHRIERNLAFPSAEFRAKVRTAAKQRGFRTEQAFLI
Ga0182040_101761513	3300016387	Soil	MRKHRIERNLAFPSAEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGD
Ga0182040_107057761	3300016387	Soil	MKKERIERNLLFPNQQFRDRVRSAAMERGFRSEQA
Ga0182037_101866693	3300016404	Soil	MRKRRIERNLAFPSEEFRTNVRTAAKNRGFRTEQAFILAACENELKRDGHTDAN
Ga0182039_106946742	3300016422	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRMEKAFIFAACENEMKRDGRTHAH
Ga0182039_107384852	3300016422	Soil	MRKRRIERNLAFPSEEFRAKVRNAAKDRGYRTEQAFILA
Ga0182038_105240391	3300016445	Soil	VVKQRTERNLLFPSKEFRDRVRLATKERGFRSEQAFILA
Ga0182038_106823493	3300016445	Soil	MRKHRIERNLAFPSEEFRARVRTAAKQRGFRTEQAFLIAACEN
Ga0187801_103933631	3300017933	Freshwater Sediment	MRKHRIERNLAFPSEEFRAKVRTAAKERGFRTEQAFLLAACEHELERGA
Ga0187785_101741132	3300017947	Tropical Peatland	MRKHRIERNLAFPSEEFRSKVRTAAKQRGFRTEQAFLIAACEHELERGDNTEAMDDLEA
Ga0187766_108379532	3300018058	Tropical Peatland	MRKKRIERNLAFPSQEFRARVRTAARERGFRTEQAFILAACENELKRDDGTE
Ga0187769_112771271	3300018086	Tropical Peatland	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGDNTEAMDD
Ga0187770_102615062	3300018090	Tropical Peatland	MRKHRIERSLAFPTEKFRQQIRSAAKERGFRSEQAFILAACQNEL
Ga0187770_109819181	3300018090	Tropical Peatland	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGDNTEAMDDL
Ga0187770_109871251	3300018090	Tropical Peatland	MKKERIERNLLFPSQQFRDRVQSAARERGFRSEQAFILAACWNELERGDRTE
Ga0066662_104230232	3300018468	Grasslands Soil	MRKRRIERNLAFPSEEFRTKVRTAAKNRGFRTEQAFILAACENELKRDGHTDANSQM
Ga0213878_103558681	3300021444	Bulk Soil	MRKHRIERNLAFPSEEFRAKVRSAAKQRGFRTEQAFLIAACEHELERGDNTEAMD
Ga0187846_102293432	3300021476	Biofilm	MRKHRIERNLAFPSEEFRTKVRTAAKQRGFRTEQAFLIAACEHELERGN
Ga0210410_107569662	3300021479	Soil	MKKHRIERNLLFPSREFRDRVRSAASERGFRSEQSFI
Ga0126371_102021701	3300021560	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELER
Ga0126371_106713111	3300021560	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACERELERGDNTEAIDDLEA
Ga0126371_119258142	3300021560	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHEL
Ga0126371_125058541	3300021560	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFL
Ga0209057_10313264	3300026342	Soil	MKKHRIERNLLFPSREFRDRVRSAASERGFRSEQAFILTSC
Ga0207759_1009781	3300026823	Tropical Forest Soil	MRKHRIERNLAFPSEEFRARVRTAAKQRGFRTEQAFLIAA
Ga0207760_1046621	3300026845	Tropical Forest Soil	MRKRRIERNLAFPTEEFRAKVRTAAKDQGFRTEQAFILAACENEL
Ga0207802_10063962	3300026847	Tropical Forest Soil	MRKHRIERNLAFPSEEFRARVRTAAKQRGFRTEQAFLIAACEHELER
Ga0207758_10016331	3300026895	Tropical Forest Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRG
Ga0207779_10125361	3300026928	Tropical Forest Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRDDRTDANSQM
Ga0207779_10390551	3300026928	Tropical Forest Soil	MRKHRIERNLAFPSEEFRARVRTAAKQRGFRTEQAFLIAACEHELERGDNTEAMDDLEAR
Ga0207854_10408541	3300026982	Tropical Forest Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRGGRTD
Ga0207784_10260551	3300026997	Tropical Forest Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACESEIKR
Ga0207722_10152501	3300027003	Tropical Forest Soil	MRKRRIERNLAFPSEEFRAKVRAAAQDRGFRTEQAFILAAC
Ga0209076_10429241	3300027643	Vadose Zone Soil	MAKPRTERSLLFPSEEFRERVRKGAKDRGFRSEQAFILAACE
Ga0209076_11732272	3300027643	Vadose Zone Soil	MAKPRTERNLLFPSKEFRDQVRKASKDRGFRSEQAFILAA
Ga0209118_10487571	3300027674	Forest Soil	MAKPRTERSLLFPSEEFRARVRNAAKDRGFRSEQAFILAACENE
Ga0207862_10219404	3300027703	Tropical Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIA
Ga0209040_102955871	3300027824	Bog Forest Soil	MRKHRIERNLAIPTEEFRTRVRTAAKEQGFRSEQAFILAACENEFKR
Ga0310038_103733861	3300030707	Peatlands Soil	MAKPRTERSLLFPSEEFRERVRNAAKDRGFRSEQAFILAACESEIRR
Ga0170834_1037189192	3300031057	Forest Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERG
Ga0318538_108028811	3300031546	Soil	MKKQRTERNLLFPSVEFRNRIRSAAKEGGFRSEQAF
Ga0310915_104340181	3300031573	Soil	MRKRRIERNLAFPSEEFRTKVRTAAKDRGFRTEQAFIL
Ga0310915_105209941	3300031573	Soil	MRKRRIERNLAFPSEEFRAKVRTAAKDRGFRTEQAFILAACESEI
Ga0310915_106343191	3300031573	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAF
Ga0318542_100219841	3300031668	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACE
Ga0318561_104892352	3300031679	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRDSRT
Ga0318574_102403761	3300031680	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGDN
Ga0318572_107082191	3300031681	Soil	VRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELEKGDNTEAMDDLE
Ga0318572_108873071	3300031681	Soil	MRKHRIERNLAFPSEEFRARVRTASKQRGFRTEQAFLIAACEHELE
Ga0306918_115037861	3300031744	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRDGRTDANSQMEA
Ga0318492_106677401	3300031748	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGDNTE
Ga0307475_101438021	3300031754	Hardwood Forest Soil	MRKRRIERNLALPSEEFRTNVRTAAKDRGFRTEQAFILAACEN
Ga0307475_103994942	3300031754	Hardwood Forest Soil	MRKHRIERNLAFPTEKFRQQILSAAKERGFRSEQAFILAACKNELERGNGT
Ga0318509_108302211	3300031768	Soil	MRKRRVERNLAFPSEEFRMRVRTAAKERGFRTEQAFILAACE
Ga0318546_106009101	3300031771	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERADN
Ga0318547_102283102	3300031781	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGDNTEAMD
Ga0310917_103176631	3300031833	Soil	MRKHRIERNLAFPSEEFRAKVRTASKQRGFRTEQAFLIAACEHELERGDHTEAM
Ga0310917_105894271	3300031833	Soil	MRKRRIERNLAFPSEEFRTKVRTAAKDRGFRTEQAFILAACENELK
Ga0318512_107379121	3300031846	Soil	VRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELEKGDNTEAMD
Ga0306919_106177673	3300031879	Soil	MRKRRIERNLAFPSEEFRTKVRTAAKNRGFRTEQAFILAACENELKRDGH
Ga0306919_110137821	3300031879	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQA
Ga0318536_105164012	3300031893	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGDNTEAMDDLEAR
Ga0306923_113741211	3300031910	Soil	VVKQRTERNLLFPSKEFRDRVRLAAKERGFRSEQAFILAACKNELE
Ga0306921_102972021	3300031912	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENEMKRDGRTDA
Ga0310912_100262601	3300031941	Soil	MRKHRIERNLAFPSEEFRARVRTAAKERGFRTEQAFLIAAC
Ga0310912_104097694	3300031941	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLI
Ga0310912_106371152	3300031941	Soil	MRKHRIERNLAFPSEEFRAKVRTASKQRGFRTEQAFLIAACEHELERGDHTEA
Ga0310916_105273411	3300031942	Soil	MKKERIERNLLFPSQQFRDRVRSAARERGFRSEQAFILAACSNELER
Ga0310916_110579341	3300031942	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRDGRTDAN
Ga0310910_105344381	3300031946	Soil	MRKHRIERNLAFPSEEFRTKVRTAAKQRGFRTEQAFLIAACEHELER
Ga0310910_109920081	3300031946	Soil	MKKERTERNLLFPNVEFRNRIRTAAKERGFRSEQAFILAACENDLERGDS
Ga0310910_114832031	3300031946	Soil	MRKHRIERNLAFPSEEFRARVRTAAKQRGFRTEQAFLIAAC
Ga0310909_110196741	3300031947	Soil	MKKERTERNLLFPNMEFRNRIRTAAKERGFRSEQAFILAA
Ga0306926_103268321	3300031954	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELE
Ga0306926_111206641	3300031954	Soil	MRKHRIERNLAFPSEEFRAKVRTAARQRGFRTEQAFLIAACEHELERGN
Ga0306922_119899091	3300032001	Soil	MRKRRIERNLAFPSEEFRAKVRTAAKDRGFRTEQAFILAACE
Ga0318545_100652924	3300032042	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACEN
Ga0318532_102852662	3300032051	Soil	MRKRRVERNLAFPSEEFRMRVRTAAKERGFRTEQAFILAAC
Ga0318510_103618092	3300032064	Soil	MRKHRIERNLAFPSAEFRAKVRTAAKQRGFRTEQA
Ga0318513_106887481	3300032065	Soil	MRKHRIERNLAFPSEEFRAKVRTAAKQRGFRTEQAFLIAACEHELERGDNTEA
Ga0306924_119895392	3300032076	Soil	MRKHRIERNLAFPSEEFRARVRTAAKQRGFRTEQAFLIAACENELERGDNSEAMDDLEA
Ga0306920_1007851141	3300032261	Soil	MRKRRIERNLAFPSEEFRAKVRTAAKDRGFRTEQAFILAACESEIKRDTHTDATSQM
Ga0335081_108647161	3300032892	Soil	MKKERTERNLLFPNMEFRNRIRNAAKERGFRSEQAFIL
Ga0335077_103933261	3300033158	Soil	MRKHRIERNLAFPTEEFRARVRTVAKEQGFRSEQAFILAACENEFKRVE
Ga0310914_104200913	3300033289	Soil	MRKRRIERNLAFPSEEFRAKVRTAAQDRGFRTEQAFILAACENELKRDGRTDANS

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F075907

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences