Basic Information | |
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Family ID | F076286 |
Family Type | Metagenome / Metatranscriptome |
Number of Sequences | 118 |
Average Sequence Length | 49 residues |
Representative Sequence | VNGDARGWRMALVPDALINPPEQARAALPDVLGVLEASGYGVLQLPPAG |
Number of Associated Samples | 113 |
Number of Associated Scaffolds | 118 |
Quality Assessment | |
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Transcriptomic Evidence | Yes |
Most common taxonomic group | Unclassified |
% of genes with valid RBS motifs | 73.27 % |
% of genes near scaffold ends (potentially truncated) | 83.05 % |
% of genes from short scaffolds (< 2000 bps) | 72.03 % |
Associated GOLD sequencing projects | 110 |
AlphaFold2 3D model prediction | Yes |
3D model pTM-score | 0.49 |
Hidden Markov Model |
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Most Common Taxonomy | |
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Group | Unclassified (66.102 % of family members) |
NCBI Taxonomy ID | N/A |
Taxonomy | N/A |
Most Common Ecosystem | |
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GOLD Ecosystem | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (21.186 % of family members) |
Environment Ontology (ENVO) | Unclassified (22.881 % of family members) |
Earth Microbiome Project Ontology (EMPO) | Free-living → Non-saline → Soil (non-saline) (46.610 % of family members) |
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Predicted Topology & Secondary Structure | |||||
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Classification: | Fibrous | Signal Peptide: | No | Secondary Structure distribution: | α-helix: 19.48% β-sheet: 5.19% Coil/Unstructured: 75.32% | Feature Viewer |
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Structure Viewer | |
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Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100 | pTM-score: 0.49 |
Powered by PDBe Molstar |
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Pfam ID | Name | % Frequency in 118 Family Scaffolds |
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PF04463 | 2-thiour_desulf | 5.08 |
PF01522 | Polysacc_deac_1 | 3.39 |
PF00106 | adh_short | 2.54 |
PF02776 | TPP_enzyme_N | 2.54 |
PF00593 | TonB_dep_Rec | 2.54 |
PF08450 | SGL | 2.54 |
PF07715 | Plug | 1.69 |
PF01717 | Meth_synt_2 | 1.69 |
PF07690 | MFS_1 | 0.85 |
PF00270 | DEAD | 0.85 |
PF03466 | LysR_substrate | 0.85 |
PF00753 | Lactamase_B | 0.85 |
PF03965 | Penicillinase_R | 0.85 |
PF13561 | adh_short_C2 | 0.85 |
COG ID | Name | Functional Category | % Frequency in 118 Family Scaffolds |
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COG1683 | Uncharacterized conserved protein YbbK, DUF523 family | Function unknown [S] | 5.08 |
COG0726 | Peptidoglycan/xylan/chitin deacetylase, PgdA/NodB/CDA1 family | Cell wall/membrane/envelope biogenesis [M] | 3.39 |
COG3386 | Sugar lactone lactonase YvrE | Carbohydrate transport and metabolism [G] | 2.54 |
COG3391 | DNA-binding beta-propeller fold protein YncE | General function prediction only [R] | 2.54 |
COG0620 | Methionine synthase II (cobalamin-independent) | Amino acid transport and metabolism [E] | 1.69 |
COG1846 | DNA-binding transcriptional regulator, MarR family | Transcription [K] | 0.85 |
COG3682 | Transcriptional regulator, CopY/TcrY family | Transcription [K] | 0.85 |
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Name | Rank | Taxonomy | Distribution |
Unclassified | root | N/A | 66.10 % |
All Organisms | root | All Organisms | 33.90 % |
Visualization |
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Habitat | Taxonomy | Distribution |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 21.19% |
Vadose Zone Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil | 7.63% |
Hardwood Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil | 6.78% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil | 5.93% |
Palsa | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Palsa | 5.93% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil | 5.08% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil | 4.24% |
Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil | 4.24% |
Surface Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil | 3.39% |
Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil | 3.39% |
Fen | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen | 2.54% |
Peatland | Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland | 1.69% |
Freshwater Sediment | Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment | 1.69% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil | 1.69% |
Bog | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog | 1.69% |
Tropical Forest Soil | Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil | 1.69% |
Bog | Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog | 1.69% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere | 1.69% |
Bog | Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog | 0.85% |
Terrestrial Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil | 0.85% |
Glacier Forefield Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil | 0.85% |
Peatlands Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil | 0.85% |
Agricultural Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil | 0.85% |
Grasslands Soil | Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil | 0.85% |
Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil | 0.85% |
Soil | Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil | 0.85% |
Untreated Peat Soil | Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil | 0.85% |
Permafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil | 0.85% |
Prmafrost Soil | Environmental → Terrestrial → Soil → Wetlands → Permafrost → Prmafrost Soil | 0.85% |
Corn, Switchgrass And Miscanthus Rhizosphere | Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere | 0.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.85% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere | 0.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere | 0.85% |
Miscanthus Rhizosphere | Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere | 0.85% |
Populus Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere | 0.85% |
Switchgrass Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere | 0.85% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.85% |
Corn Rhizosphere | Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere | 0.85% |
Boreal Forest Soil | Environmental → Terrestrial → Soil → Unclassified → Unclassified → Boreal Forest Soil | 0.85% |
Visualization |
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Taxon OID | Sample Name | Habitat Type | IMG/M Link |
---|---|---|---|
3300002915 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 09_27_2013_1_20cm | Environmental | Open in IMG/M |
3300004633 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio | Environmental | Open in IMG/M |
3300005167 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_121 | Environmental | Open in IMG/M |
3300005174 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_129 | Environmental | Open in IMG/M |
3300005238 | Microbial communities on the surface of aged kaolinite enhanced biochar from soil in Sydney, Australia | Environmental | Open in IMG/M |
3300005332 | Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly) | Environmental | Open in IMG/M |
3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Host-Associated | Open in IMG/M |
3300005529 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen16_06102014_R1 | Environmental | Open in IMG/M |
3300005541 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 | Environmental | Open in IMG/M |
3300005542 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1 | Environmental | Open in IMG/M |
3300005553 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_144 | Environmental | Open in IMG/M |
3300005569 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 | Environmental | Open in IMG/M |
3300005993 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 1 DNA2013-046 | Environmental | Open in IMG/M |
3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Environmental | Open in IMG/M |
3300006176 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5 | Environmental | Open in IMG/M |
3300006806 | Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 | Environmental | Open in IMG/M |
3300007076 | Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 | Host-Associated | Open in IMG/M |
3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Host-Associated | Open in IMG/M |
3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Host-Associated | Open in IMG/M |
3300009650 | Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061 | Environmental | Open in IMG/M |
3300010159 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 | Environmental | Open in IMG/M |
3300010366 | Tropical forest soil microbial communities from Panama - MetaG Plot_24 | Environmental | Open in IMG/M |
3300010373 | Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-4 | Environmental | Open in IMG/M |
3300010398 | Tropical forest soil microbial communities from Panama - MetaG Plot_35 | Environmental | Open in IMG/M |
3300010866 | Boreal forest soil eukaryotic communities from Alaska, USA - C1-3 Metatranscriptome (Eukaryote Community Metatranscriptome) | Environmental | Open in IMG/M |
3300012362 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG | Environmental | Open in IMG/M |
3300012582 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG | Environmental | Open in IMG/M |
3300012683 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz2.16 metaG | Environmental | Open in IMG/M |
3300012685 | Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG | Environmental | Open in IMG/M |
3300012924 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012930 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly) | Environmental | Open in IMG/M |
3300012957 | Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG | Environmental | Open in IMG/M |
3300012960 | Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG | Environmental | Open in IMG/M |
3300012971 | Tropical forest soil microbial communities from Panama - MetaG Plot_1 | Environmental | Open in IMG/M |
3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Host-Associated | Open in IMG/M |
3300014168 | Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_10_metaG | Environmental | Open in IMG/M |
3300014493 | Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG | Environmental | Open in IMG/M |
3300015054 | Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (PacBio error correction) | Environmental | Open in IMG/M |
3300015162 | Arctic soil microbial communities from a glacier forefield, Storglaci?ren, Tarfala, Sweden (Sample st-4c, rock/ice/stream interface) | Environmental | Open in IMG/M |
3300016341 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 | Environmental | Open in IMG/M |
3300016404 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 | Environmental | Open in IMG/M |
3300016445 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 | Environmental | Open in IMG/M |
3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Host-Associated | Open in IMG/M |
3300017927 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_4 | Environmental | Open in IMG/M |
3300017948 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10 | Environmental | Open in IMG/M |
3300017993 | Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_3 | Environmental | Open in IMG/M |
3300018043 | Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_7_10 | Environmental | Open in IMG/M |
3300019787 | Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (PacBio error correction) | Environmental | Open in IMG/M |
3300020580 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M | Environmental | Open in IMG/M |
3300021180 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O | Environmental | Open in IMG/M |
3300021478 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M | Environmental | Open in IMG/M |
3300021479 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M | Environmental | Open in IMG/M |
3300021559 | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M | Environmental | Open in IMG/M |
3300021560 | Tropical forest soil microbial communities from Panama - MetaG Plot_4 | Environmental | Open in IMG/M |
3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) | Host-Associated | Open in IMG/M |
3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) | Host-Associated | Open in IMG/M |
3300026312 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes) | Environmental | Open in IMG/M |
3300026548 | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_155 (SPAdes) | Environmental | Open in IMG/M |
3300027562 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027591 | Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027635 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M2 (SPAdes) | Environmental | Open in IMG/M |
3300027727 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM3H0_M1 (SPAdes) | Environmental | Open in IMG/M |
3300027853 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes) | Environmental | Open in IMG/M |
3300027867 | Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen05_05102014_R1 (SPAdes) | Environmental | Open in IMG/M |
3300027884 | Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF2 (SPAdes) | Environmental | Open in IMG/M |
3300027889 | Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes) | Environmental | Open in IMG/M |
3300028047 | Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes) | Environmental | Open in IMG/M |
3300028746 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N3_1 | Environmental | Open in IMG/M |
3300028747 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_E1_2 | Environmental | Open in IMG/M |
3300028775 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Palsa_N2_2 | Environmental | Open in IMG/M |
3300029952 | II_Bog_N3 coassembly | Environmental | Open in IMG/M |
3300030007 | I_Palsa_E1 coassembly | Environmental | Open in IMG/M |
3300030524 | II_Palsa_N3 coassembly | Environmental | Open in IMG/M |
3300030693 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N2_2 | Environmental | Open in IMG/M |
3300030737 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Palsa_N1_2 | Environmental | Open in IMG/M |
3300031232 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_3 | Environmental | Open in IMG/M |
3300031474 | Fir Coassembly Site 11 - Champenoux / Amance forest | Environmental | Open in IMG/M |
3300031544 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f26 | Environmental | Open in IMG/M |
3300031561 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26 | Environmental | Open in IMG/M |
3300031680 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f22 | Environmental | Open in IMG/M |
3300031713 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f22 | Environmental | Open in IMG/M |
3300031719 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2) | Environmental | Open in IMG/M |
3300031720 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515 | Environmental | Open in IMG/M |
3300031724 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f20 | Environmental | Open in IMG/M |
3300031726 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_1 | Environmental | Open in IMG/M |
3300031736 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21 | Environmental | Open in IMG/M |
3300031748 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f22 | Environmental | Open in IMG/M |
3300031754 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515 | Environmental | Open in IMG/M |
3300031765 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f22 | Environmental | Open in IMG/M |
3300031768 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22 | Environmental | Open in IMG/M |
3300031770 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17 | Environmental | Open in IMG/M |
3300031771 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19 | Environmental | Open in IMG/M |
3300031781 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20 | Environmental | Open in IMG/M |
3300031788 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2 | Environmental | Open in IMG/M |
3300031820 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_515 | Environmental | Open in IMG/M |
3300031821 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f20 | Environmental | Open in IMG/M |
3300031823 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05 | Environmental | Open in IMG/M |
3300031902 | Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Fen_T0_2 | Environmental | Open in IMG/M |
3300031912 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2) | Environmental | Open in IMG/M |
3300031962 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515 | Environmental | Open in IMG/M |
3300032001 | Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2) | Environmental | Open in IMG/M |
3300032025 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20 | Environmental | Open in IMG/M |
3300032044 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20 | Environmental | Open in IMG/M |
3300032066 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f18 | Environmental | Open in IMG/M |
3300032067 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f22 | Environmental | Open in IMG/M |
3300032089 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f23 | Environmental | Open in IMG/M |
3300032160 | Sb_50d combined assembly (MetaSPAdes) | Environmental | Open in IMG/M |
3300032180 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515 | Environmental | Open in IMG/M |
3300032205 | Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 | Environmental | Open in IMG/M |
3300033290 | Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15 | Environmental | Open in IMG/M |
3300034163 | Peat soil microbial communities from wetlands in Alaska, United States - Goldstream_04D_14 | Environmental | Open in IMG/M |
Geographical Distribution | |
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Protein ID | Sample Taxon ID | Habitat | Sequence |
JGI25387J43893_10027723 | 3300002915 | Grasslands Soil | VNGDARGWRMALVPDALINPPEQARAALPDVLGVLEASGYGVLQLPPAG |
Ga0066395_100650171 | 3300004633 | Tropical Forest Soil | VSDDARGWRIALVPDSLINVGDPTSAALPDVLGVLELSGYGLLQLPP |
Ga0066672_107762562 | 3300005167 | Soil | VNADARGWRMALVPDALINPPEQARAALPDVLGVLEASGYGVLQLP |
Ga0066680_107120632 | 3300005174 | Soil | VNVDVRGWRMALVPDALINPPERARTALPDVLGVLEASGYGVLQLPPTGGHG |
Ga0073692_10682611 | 3300005238 | Soil | MNPDVRGWRIALTPDALMNPSRTALPDVLSVLESNGYGVLQ |
Ga0066388_1007306911 | 3300005332 | Tropical Forest Soil | VSDDARGWRIALVPDSLINVGDAAPAALPDVLAVLEASGYGLLQL |
Ga0070678_1000946001 | 3300005456 | Miscanthus Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGGHS |
Ga0070741_101565604 | 3300005529 | Surface Soil | VNADSRGWRIALLPDAFVNLVHDSRSTLPDVMGLLDANGYGVLQLPPPGE |
Ga0070733_102743971 | 3300005541 | Surface Soil | VNGDARGWRMALVPDTLINPRTQDRAALPDALGVLTACG |
Ga0070732_110061731 | 3300005542 | Surface Soil | VNSDARGWRIALVPDALINPQRRVGAALPDLLGLLETSGYGVLQLPP |
Ga0066695_103722872 | 3300005553 | Soil | VNVDARGWRMALVPDALINPPERARTALPDVLGVLEASGYGVLQLPPKGGHGLL |
Ga0066705_101839451 | 3300005569 | Soil | MSGDARGWRMALVPDALINPTEQARTALPDVLGVLEASGYGVLQLP |
Ga0080027_101839141 | 3300005993 | Prmafrost Soil | VNGDVRGWRMALVPDSLINPRSLARAALPDALGVLAACGYGVLQLPPPGEHGLL |
Ga0070717_104080293 | 3300006028 | Corn, Switchgrass And Miscanthus Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGGHSQLLAVIAD |
Ga0070765_1017047752 | 3300006176 | Soil | MNADVRGWRVALVPDALINPPDSARGKLPDVLSVLESSGYGVMQLPPPGAHAL |
Ga0079220_105750602 | 3300006806 | Agricultural Soil | MSEDARGWRIALVPDSLINAPAGAARRVPDVLKILEENGYGVLQLP |
Ga0075435_1005173802 | 3300007076 | Populus Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGGHSQLLAVIA |
Ga0105245_115051462 | 3300009098 | Miscanthus Rhizosphere | MNPDVRGWRMALTPEALINSSAPLPDVLGVLDASGYGVLQLPPPGDY |
Ga0105249_130337501 | 3300009553 | Switchgrass Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGGHSQLLA |
Ga0105857_12603171 | 3300009650 | Permafrost Soil | VNGDARGWRMALVPEALINPPARDRAALPDVLGVLEAGG |
Ga0099796_100046161 | 3300010159 | Vadose Zone Soil | VNVDARGWRMALVPDALINPPVRARTALPDVLGVLEASGYGVLQLPPTGGHGLLLAVIAD |
Ga0126379_124747821 | 3300010366 | Tropical Forest Soil | MSEDARGWRIALVPDTLINAPARASPASLDVLGVLEQNGYGVLQLPPPG |
Ga0134128_129429071 | 3300010373 | Terrestrial Soil | MALVPDMLVNPPAPRPALPDVLALLAAGGYGVLQLPPPGEHRLLL |
Ga0126383_115669751 | 3300010398 | Tropical Forest Soil | VSDDARGWRIALVPDSLINVGDAASAALPDVLGVLEASGYGLLQLPPPGEHRLLLA |
Ga0126344_14204442 | 3300010866 | Boreal Forest Soil | MALVPDALINPPTLARAALPNALGVLEAGGYGVLQ |
Ga0137361_107566013 | 3300012362 | Vadose Zone Soil | VNLDARGWRMALVPDALINPPERARTALPDVLGVLEASGYGVL |
Ga0137358_100954531 | 3300012582 | Vadose Zone Soil | VNGDARGWRIALVPDTLINPRDRVRAALPDALAILTDCGYGVLQLPPPGEHG |
Ga0137358_103956523 | 3300012582 | Vadose Zone Soil | MTIDSRGWRMALVPDTLINPPPSVRPALPDVLGVLETSGYGVLQLPPPGE |
Ga0137398_111439042 | 3300012683 | Vadose Zone Soil | VNVDARGWRMALVPDALINPPERARTALPDVLGVLEASGYGVLQLPP |
Ga0137397_110161142 | 3300012685 | Vadose Zone Soil | VNGDARGWRMALVPDTLINPRTLARAALPDVLGVLTACGYGVLQLPPPGEHGLLL |
Ga0137413_108776332 | 3300012924 | Vadose Zone Soil | MNGDSRGWRMALVPDALINPSLRARAALPDVIRVLETSGYGVL |
Ga0137407_106122421 | 3300012930 | Vadose Zone Soil | VIGDIRGWRMALVPDTLINTPQRLRAALPDVLSVLEASGYGVLQLPPPGEHGLLLA |
Ga0164303_103824151 | 3300012957 | Soil | VNRDARGWRMALVPDALINPPVGAGAALPDVLRMLEASNYGVLQLPP |
Ga0164301_109980582 | 3300012960 | Soil | VNRDARGWRMALVPDALINPTAGAGAALPDVLRVLE |
Ga0126369_117484522 | 3300012971 | Tropical Forest Soil | VSGDVRGWRVALVPDTLLNPPDALRASLPDVLRVLEDGRYGVLQLPPPGA |
Ga0126369_128167272 | 3300012971 | Tropical Forest Soil | VSNDARGWRIALVPDSLLNIRGTSSTALPDVVSVLEESGYGVLQLPPPGD |
Ga0157372_114959063 | 3300013307 | Corn Rhizosphere | MNPDVRGWRMALTPEALINSSAPLPDVLGVLDASGYGVLQ |
Ga0181534_107422381 | 3300014168 | Bog | MSGDARGWRIALLPDALVNPREASRAALPDVLGLLEAAGFGVLQLPPP |
Ga0182016_100266711 | 3300014493 | Bog | MNGDARGWRMALVPDSLINSPPHPLPTTLVDVLAVLEASGYGLLQLPPPGEHPLLL |
Ga0137420_14820219 | 3300015054 | Vadose Zone Soil | VNVDARGWRMALVPDALINPPERARTALPDVLGVLEASGYGVLQLPPKAGMACCWR* |
Ga0167653_10822392 | 3300015162 | Glacier Forefield Soil | VNRDARGWRMALVPDVLVNPPPRLRSVLPDILRVLEASGYGVLQLPPL |
Ga0182035_104632163 | 3300016341 | Soil | VSGDVRGWHVALVPDTLLNPPDALRASLPDVLRVLEDRRYGVLQLPPPGAH |
Ga0182037_102961103 | 3300016404 | Soil | VSDDARGWRIALVPDTLINAPAAISTGLPDVLEVLEVNGY |
Ga0182038_100222531 | 3300016445 | Soil | VSDDARGWRIALVPDALINAPARASPASPDVLGVLEQNGYG |
Ga0182038_104506133 | 3300016445 | Soil | MSADARGWRIALVPDTLINQPKATGEAPPDVLRVLELSGYGVLQL |
Ga0163161_112692902 | 3300017792 | Switchgrass Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGG |
Ga0187824_101707211 | 3300017927 | Freshwater Sediment | MALLADALINPSDEARAGLPDVLAVLESSGYGVLHLPPE |
Ga0187847_103774501 | 3300017948 | Peatland | MALLPDSLINPSQAGRTALPDVLGALEDNGYGVLQLPPPG |
Ga0187823_100065071 | 3300017993 | Freshwater Sediment | MALVPDALINPSQAARDALPDVLAVLESIGYGVQQLPPPGAH |
Ga0187887_105100122 | 3300018043 | Peatland | VNGDARGWRMALLPDSLINPSQAARTALPDVLGVLEANGY |
Ga0182031_12325081 | 3300019787 | Bog | MSGDARGWRIALVPDALVNPRVAAHAALPDVLGLLEAAGYGGYGVLQLPPVGDEGPLLA |
Ga0210403_114804931 | 3300020580 | Soil | MNGDARGWHMALVPDTVINPPAGASASLPDVLRILEANRYGVLQLPPMGEHSLL |
Ga0210396_114316622 | 3300021180 | Soil | VTCDARGWHMALVPDALVNPPDPARAAPPDVLGILATGGYGVLQLPPPGEHGDDSAP |
Ga0210402_102079521 | 3300021478 | Soil | VKGDARGWRMALVPDALINPPTLARAALPDALGVLEAGGYGVLQLPPPGQHALLLAVIADEV |
Ga0210410_108065771 | 3300021479 | Soil | MSGDARGWRMALVPDALINPPERARTALPDVLGVLEASGYGVLQLPPKGGHGLLIAVI |
Ga0210409_116742262 | 3300021559 | Soil | VKDDVRGWRMALVPDSLINRPHRSPAALPDVLAVLEASGYGVLHLPPPGKH |
Ga0126371_106261593 | 3300021560 | Tropical Forest Soil | VSDDARGWRIALVPDSLINVGDRASAALPDVLAVLEASGYGLLQLPPPGEHRLLL |
Ga0207695_117278682 | 3300025913 | Corn Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGGHSLLLAVIADQVA |
Ga0207686_108078721 | 3300025934 | Miscanthus Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGGHG |
Ga0207689_115126301 | 3300025942 | Miscanthus Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGGH |
Ga0207641_123818811 | 3300026088 | Switchgrass Rhizosphere | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQLPPPGGHSLLLAVIA |
Ga0209153_11989371 | 3300026312 | Soil | VSGDVRGWRIALVPDALLNPPDGTGSRLDVLRVLEACGYGVLQLPHVA |
Ga0209161_101456241 | 3300026548 | Soil | VNADARGWRMALVPDALINPPHRLRTALPDVLRVL |
Ga0209735_10220931 | 3300027562 | Forest Soil | VNGDARGWRMALVPDTLINPRTLARAALPNVLGVLTACGYGVLQ |
Ga0209733_10016841 | 3300027591 | Forest Soil | VNVDARGWRMALVPDALINPPERARTALPDVLGVLEASGYGMLQLPPKGGHGLLLAVIGD |
Ga0209625_10049841 | 3300027635 | Forest Soil | VTGDARGWRMALVPDALINPPERARTALPDVLGVLEASGYGVLQLP |
Ga0209328_101751942 | 3300027727 | Forest Soil | MNVDARGWRMALVPDTLINPRTLARSALPNVLGVLEANGYGVLQLPPPGEHGLLLA |
Ga0209274_107474871 | 3300027853 | Soil | VTADARGWRVALVADALMDATSQPVTLPDVLAVLDASGYGLLQLPPPGGHRLLLAV |
Ga0209167_100463293 | 3300027867 | Surface Soil | VNGDARGWRMALVPDTLINPRTQDRAALPDALGVLTACGYGVLQLPPPGEHGLLLAVIA |
Ga0209275_100821183 | 3300027884 | Soil | VTCDARGWHMALVPDALVNPPDPARAALPDVLRILATGGYGVLQLPP |
Ga0209380_107960371 | 3300027889 | Soil | VNADARGWRVALVADALMDATSQPVTLPDVLAVLDASGYGLLQLPPPGGHRLLLA |
Ga0209526_103100443 | 3300028047 | Forest Soil | VTGDARGWRMALVPDALINPPERARTALPDVLGVLEASGYGVLQLPPQGRH |
Ga0302233_104062841 | 3300028746 | Palsa | VSADARGWRVALLPDALINPPERLHALLPDALAVLEAAGYGLLQLPAPGTQRLLLAVIAE |
Ga0302219_102397902 | 3300028747 | Palsa | VNGDARGWRMALLPDSLINPSQAVGTALPDVLGVLEANGYG |
Ga0302231_101165383 | 3300028775 | Palsa | VNGDARGWRMALLPDSLINPSQAVGTALPDVLGVLE |
Ga0311346_101283815 | 3300029952 | Bog | MNGDARGWRMALVPDSLINSPPHPLPTTLVDVLAV |
Ga0311338_118989231 | 3300030007 | Palsa | VTCDARGWHVALVPDSLLNPPDRAHAALPDVLSILETRGYGVLQLPPAGE |
Ga0311357_116852061 | 3300030524 | Palsa | MALVPDALVNPPDRARAPLPDVLGILTTCGYGVLQLPP |
Ga0302313_104575771 | 3300030693 | Palsa | VTCDARGWHVALVPNALVNPPDRARAALPDVLGVLATCGYGVLQLPPTGERGGLLAVI |
Ga0302310_102703453 | 3300030737 | Palsa | VSADARGWRVALLPDALINPPERLHALLPDALAVLEAAGYGLLQLPAPGTQRLL |
Ga0302323_1010803781 | 3300031232 | Fen | VTADARGWRMALVPDTLVNPPERDGAAAPDALGILAACG |
Ga0170818_1025293721 | 3300031474 | Forest Soil | MNGDARGWRLALVPDALINPPDRDRAVLPDVLGVLEANGYGVLQ |
Ga0318534_100390511 | 3300031544 | Soil | VSDDARGWRIALVPDTLINAPATLSTTLPNVLEVLEVNGYGVLQ |
Ga0318528_104959582 | 3300031561 | Soil | VSDDARGWRIALVPDSLLDIRGTSSTALPDVVSVLEESGYGLLQ |
Ga0318574_101116913 | 3300031680 | Soil | VSGDVRGWHVALVPETLINPPEALRASLPDVLRVLEDHRYGVLQLPPPGAHGPLL |
Ga0318496_101573613 | 3300031713 | Soil | MSGDARGWHMALVPDRLINPPEDASAPLPDVLRILEANRYGVLQLPPAGEHGLLLAVIAD |
Ga0306917_114307321 | 3300031719 | Soil | VSDDARGWRIALVPDSLLDIRGTSSTALPDVVSVLEESGYGLLQLPPPGE |
Ga0307469_102710733 | 3300031720 | Hardwood Forest Soil | VNRDARGWRMALVPDALINPPAGAGAALPDVLRVLEASNYGVLQL |
Ga0307469_104732953 | 3300031720 | Hardwood Forest Soil | MSGDARGWHMALLPDRLINPPRDAHAPLPDVLRILEANRYGVLQLPP |
Ga0318500_105752602 | 3300031724 | Soil | MSGDARGWHMALVPDRLINPPEDASAPLPDVLRILEANRYGVLQLPPAGDHNLLLAVIAD |
Ga0302321_1035503871 | 3300031726 | Fen | MALVPDTVLNPPLTMRTALPDVLGVLEASGYGVLHLPPPGEHR |
Ga0318501_105410972 | 3300031736 | Soil | VSDDARGWRIALVPDSLLDIRGTSSTALPDVVSVL |
Ga0318492_104339712 | 3300031748 | Soil | VSDDARGWRIALVPDTLINAPAAISTGLPDVLEVLEVNGYGVL |
Ga0307475_112022061 | 3300031754 | Hardwood Forest Soil | MNGDARGWHMALVPDTVINPPAGASASLPDVLRILEANRYGVLQLPPMGEH |
Ga0318554_100376521 | 3300031765 | Soil | VSDDARGWRIALVPDSLLDIRGTSSTALPDVVSVLEESGYGLLQLPPPGEHRLLLAVIAD |
Ga0318509_101650153 | 3300031768 | Soil | VSDDARGWRIALVPDSLLDIRGTSSTALPDVVSVLEESGYG |
Ga0318509_105392981 | 3300031768 | Soil | MSADARGWRIALVPDTLINQPKATGEAPPDVLRVLELSGYGVLQLPP |
Ga0318521_101839641 | 3300031770 | Soil | VSGDVRGWHVALVPETLINPPDALRASLPDVLRLLEDHRYGVLQLPPPGAHGPLL |
Ga0318546_104927302 | 3300031771 | Soil | VSDDARGWRIALVPDTLINAPARASPASPDVLSVLEQNGYGVLQL |
Ga0318547_101761291 | 3300031781 | Soil | VTHDARGWRIALLPDTLINAPAAAAAGLPDVLGILELNGYGVLQLPPPGEHR |
Ga0302319_101875761 | 3300031788 | Bog | MNGDARGWRMALVPDSLINSPPHPLTTTLVDVLAVLEASGYGLLQLPPPGEHPL |
Ga0307473_100563644 | 3300031820 | Hardwood Forest Soil | VNDDARGWRMALVPDTLINPPARAGRALPDVLRVLEANGYGVLQLPPA |
Ga0318567_101175943 | 3300031821 | Soil | VSGDVRGWHVALVPETLINPPDALRASLPDVLRLLEDHRYGVLQLPPPGAHGPLLAVIADQVAEYAH |
Ga0307478_114800781 | 3300031823 | Hardwood Forest Soil | VSGDARGWRIALVPDTLINVTAAASGTLPEVLEVLEAN |
Ga0302322_1036381591 | 3300031902 | Fen | VSSDARGWRMALLPDALINPPDQSRAAVPDLLGILETCGYGVLQLPPSGNHALLLAVIAD |
Ga0306921_123371581 | 3300031912 | Soil | MSGDARGWHMALVPDRLMNPPEDASAPLPDVLRILEANRYGVLQLPPAGEHNLLLAVIAD |
Ga0307479_111920462 | 3300031962 | Hardwood Forest Soil | VTVDLRGWRLALLADALINPSAAVRAALPDVLAVLEAAGYGVL |
Ga0306922_112478331 | 3300032001 | Soil | MSADARGWRIALVPDTLINQPKATGEAPPDVLRVLELSGYGVLQLPPPGQHS |
Ga0318507_101936083 | 3300032025 | Soil | VSDDARGWRIALVPDTLINAPAAISTGLPDVLEVLE |
Ga0318558_104184152 | 3300032044 | Soil | VSDDARGWRIALVPDTLINAPARASPASPDVLSVLEQNGYGVLQLPPPGEHRRWE |
Ga0318514_106433771 | 3300032066 | Soil | VTHDARGWRIALLPDTLINAPAAAAAGLPDVLGILELNGYGVLQLPP |
Ga0318524_104852052 | 3300032067 | Soil | VSDDARGWRIALVPDSLLDIRGTISTALPDVVSVLEES |
Ga0318525_101355071 | 3300032089 | Soil | MSADARGWRIALVPDTLINQPKATGEAPPDVLRVLELSGYGVLQLPPPGQHSLLLAV |
Ga0311301_105717144 | 3300032160 | Peatlands Soil | VYGDLRGWRIALVPEKLVNPQHRTGAAMPDVLGVLEASGYGVLQLPPLGSCADD |
Ga0307471_1007735943 | 3300032180 | Hardwood Forest Soil | MALVPDALINPPDRIRAALPDVMRLLEASGYGVLHLPPPGQHSLL |
Ga0307472_1003348053 | 3300032205 | Hardwood Forest Soil | VNRDARGWRMALVPDVLVNPPPPVRPMLPDVLAVLETAGY |
Ga0318519_104705902 | 3300033290 | Soil | VSDDARGWRIALVPDALINAPARASPASPDVLGVLEQNGYGELQ |
Ga0370515_0113809_1_171 | 3300034163 | Untreated Peat Soil | MTCDARGWHVALVPNALVNPPDRARAALPDVLGVLATCGYGVLQLPPTGERGGLLAV |
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