Metagenome / Metatranscriptome Family F076342

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076342
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	83 residues
Representative Sequence	MRGSGISGGRTGRRSELAQIDVLLYLVENGLGRSALELAQAIYGERGSELRVQQDLMRLVGAGEIERSGIGSLTDPHTYYPVPLRRQA
Number of Associated Samples	75
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	60.17 %
% of genes near scaffold ends (potentially truncated)	34.75 %
% of genes from short scaffolds (< 2000 bps)	88.98 %
Associated GOLD sequencing projects	70
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.54

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (69.492 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (32.203 % of family members)
Environment Ontology (ENVO)	Unclassified (50.847 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (72.881 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.10% β-sheet: 5.17% Coil/Unstructured: 51.72%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.54
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.54
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF07508	Recombinase	1.69
PF08241	Methyltransf_11	0.85
PF13531	SBP_bac_11	0.85
PF16868	NMT1_3	0.85
PF00239	Resolvase	0.85
PF03795	YCII	0.85
PF02586	SRAP	0.85
PF07519	Tannase	0.85
PF08388	GIIM	0.85
PF04185	Phosphoesterase	0.85
PF12759	HTH_Tnp_IS1	0.85
PF13401	AAA_22	0.85
PF00589	Phage_integrase	0.85
PF12161	HsdM_N	0.85
PF13683	rve_3	0.85
PF04539	Sigma70_r3	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	2.54
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.85
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.85
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.85
COG2350	YciI superfamily enzyme, includes 5-CHQ dehydrochlorinase, contains active-site pHis	Secondary metabolites biosynthesis, transport and catabolism [Q]	0.85
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.85
COG3511	Phospholipase C	Cell wall/membrane/envelope biogenesis [M]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
All Organisms	root	All Organisms	30.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
cellular organisms	root	All Organisms → cellular organisms	30.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	30.51 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	24.58 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	1.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	21.19 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	10.17 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5.93 %
Candidatus Acidoferrales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales	1.69 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	1.69 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.17 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	5.08 %
Candidatus Acidoferrum	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum	1.69 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	1.69 %
Beijerinckiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.17 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.08 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.69 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1.69 %
unclassified Beijerinckiaceae	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.17 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	2.54 %
Bradyrhizobium pachyrhizi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	2.54 %
unclassified Sphingomonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas	1.69 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.69 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	69.49 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	10.17 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	2.54 %
Bradyrhizobium pachyrhizi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	2.54 %
Sphingomonas sp. URHD0007	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	1.69 %
Candidatus Acidoferrum panamensis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	1.69 %
Beijerinckiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300004268\|Ga0066398_10063951	Not Available	778	Open in IMG/M
3300004633\|Ga0066395_10481211	Not Available	713	Open in IMG/M
3300005332\|Ga0066388_100901270	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Beijerinckiaceae → unclassified Beijerinckiaceae → Beijerinckiaceae bacterium	1462	Open in IMG/M
3300005332\|Ga0066388_102519219	All Organisms → cellular organisms → Bacteria	935	Open in IMG/M
3300005332\|Ga0066388_104925841	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	679	Open in IMG/M
3300005332\|Ga0066388_106806780	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas → unclassified Sphingomonas → Sphingomonas sp. URHD0007	576	Open in IMG/M
3300005363\|Ga0008090_15699061	Not Available	918	Open in IMG/M
3300005439\|Ga0070711_101922033	Not Available	520	Open in IMG/M
3300005554\|Ga0066661_10959237	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	500	Open in IMG/M
3300005587\|Ga0066654_10684479	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	573	Open in IMG/M
3300005764\|Ga0066903_100710415	Not Available	1774	Open in IMG/M
3300005764\|Ga0066903_101325704	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1347	Open in IMG/M
3300005764\|Ga0066903_102583577	Not Available	984	Open in IMG/M
3300005764\|Ga0066903_103869846	Not Available	804	Open in IMG/M
3300006175\|Ga0070712_100542593	Not Available	979	Open in IMG/M
3300006175\|Ga0070712_101673887	Not Available	557	Open in IMG/M
3300006893\|Ga0073928_10537395	Not Available	833	Open in IMG/M
3300006954\|Ga0079219_11282431	Not Available	643	Open in IMG/M
3300007788\|Ga0099795_10594698	Not Available	526	Open in IMG/M
3300009143\|Ga0099792_10348781	Not Available	892	Open in IMG/M
3300009792\|Ga0126374_10678278	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	772	Open in IMG/M
3300010046\|Ga0126384_10891794	Not Available	803	Open in IMG/M
3300010048\|Ga0126373_10288298	Not Available	1632	Open in IMG/M
3300010048\|Ga0126373_10578921	Not Available	1173	Open in IMG/M
3300010048\|Ga0126373_10616304	Not Available	1139	Open in IMG/M
3300010358\|Ga0126370_10963860	Not Available	775	Open in IMG/M
3300010358\|Ga0126370_12024045	Not Available	563	Open in IMG/M
3300010359\|Ga0126376_10589262	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1049	Open in IMG/M
3300010360\|Ga0126372_11281001	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	761	Open in IMG/M
3300010360\|Ga0126372_13166816	Not Available	511	Open in IMG/M
3300010361\|Ga0126378_10207349	Not Available	2039	Open in IMG/M
3300010361\|Ga0126378_11315543	Not Available	817	Open in IMG/M
3300010361\|Ga0126378_11752918	Not Available	706	Open in IMG/M
3300010361\|Ga0126378_12343033	Not Available	609	Open in IMG/M
3300010366\|Ga0126379_10139004	Not Available	2242	Open in IMG/M
3300010366\|Ga0126379_12195924	Not Available	653	Open in IMG/M
3300010366\|Ga0126379_13718837	Not Available	511	Open in IMG/M
3300010376\|Ga0126381_100025672	All Organisms → cellular organisms → Bacteria	6969	Open in IMG/M
3300010376\|Ga0126381_100246936	Not Available	2416	Open in IMG/M
3300010376\|Ga0126381_100298780	All Organisms → cellular organisms → Bacteria → Proteobacteria	2204	Open in IMG/M
3300010376\|Ga0126381_100574092	Not Available	1601	Open in IMG/M
3300010376\|Ga0126381_101153660	Not Available	1119	Open in IMG/M
3300010376\|Ga0126381_101166479	Not Available	1113	Open in IMG/M
3300010376\|Ga0126381_101645593	All Organisms → cellular organisms → Bacteria	927	Open in IMG/M
3300010376\|Ga0126381_103542468	Not Available	613	Open in IMG/M
3300010376\|Ga0126381_103800045	Not Available	590	Open in IMG/M
3300010376\|Ga0126381_104158049	Not Available	562	Open in IMG/M
3300010396\|Ga0134126_12746271	Not Available	534	Open in IMG/M
3300010398\|Ga0126383_12855953	Not Available	564	Open in IMG/M
3300012198\|Ga0137364_10053859	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2690	Open in IMG/M
3300012212\|Ga0150985_104285231	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	855	Open in IMG/M
3300012212\|Ga0150985_115817176	Not Available	585	Open in IMG/M
3300012469\|Ga0150984_103919589	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Candidatus Acidoferrales → Candidatus Acidoferrum → Candidatus Acidoferrum panamensis	700	Open in IMG/M
3300012582\|Ga0137358_11032858	Not Available	529	Open in IMG/M
3300012948\|Ga0126375_10172863	All Organisms → cellular organisms → Bacteria	1388	Open in IMG/M
3300012971\|Ga0126369_10584764	Not Available	1185	Open in IMG/M
3300012971\|Ga0126369_13472869	Not Available	516	Open in IMG/M
3300016270\|Ga0182036_10557200	Not Available	914	Open in IMG/M
3300016294\|Ga0182041_10064498	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2546	Open in IMG/M
3300016319\|Ga0182033_10412152	Not Available	1145	Open in IMG/M
3300016319\|Ga0182033_10424571	Not Available	1129	Open in IMG/M
3300016357\|Ga0182032_10704299	Not Available	848	Open in IMG/M
3300016371\|Ga0182034_11200692	Not Available	660	Open in IMG/M
3300016387\|Ga0182040_11463818	Not Available	579	Open in IMG/M
3300016422\|Ga0182039_10746102	Not Available	866	Open in IMG/M
3300016422\|Ga0182039_10757944	Not Available	859	Open in IMG/M
3300020579\|Ga0210407_11232929	Not Available	561	Open in IMG/M
3300020580\|Ga0210403_10207180	Not Available	1609	Open in IMG/M
3300020583\|Ga0210401_10321965	Not Available	1407	Open in IMG/M
3300020583\|Ga0210401_10796251	Not Available	805	Open in IMG/M
3300020583\|Ga0210401_11080732	Not Available	661	Open in IMG/M
3300021151\|Ga0179584_1093783	Not Available	697	Open in IMG/M
3300021168\|Ga0210406_10463946	Not Available	1006	Open in IMG/M
3300021168\|Ga0210406_10582772	Not Available	875	Open in IMG/M
3300021171\|Ga0210405_10074285	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2678	Open in IMG/M
3300021180\|Ga0210396_11412971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	575	Open in IMG/M
3300021404\|Ga0210389_10236912	Not Available	1426	Open in IMG/M
3300021432\|Ga0210384_11814173	Not Available	515	Open in IMG/M
3300021479\|Ga0210410_10803674	Not Available	825	Open in IMG/M
3300021479\|Ga0210410_10858004	Not Available	794	Open in IMG/M
3300021560\|Ga0126371_10021620	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	5942	Open in IMG/M
3300021560\|Ga0126371_10792849	Not Available	1094	Open in IMG/M
3300021560\|Ga0126371_11142916	Not Available	917	Open in IMG/M
3300021560\|Ga0126371_11649479	Not Available	766	Open in IMG/M
3300021560\|Ga0126371_11680441	Not Available	759	Open in IMG/M
3300021560\|Ga0126371_12959733	Not Available	575	Open in IMG/M
3300021560\|Ga0126371_13487795	Not Available	531	Open in IMG/M
3300022498\|Ga0242644_1018488	Not Available	684	Open in IMG/M
3300025915\|Ga0207693_10093110	Not Available	2362	Open in IMG/M
3300026527\|Ga0209059_1038778	All Organisms → cellular organisms → Bacteria → Proteobacteria	2129	Open in IMG/M
3300027874\|Ga0209465_10213829	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	962	Open in IMG/M
3300031057\|Ga0170834_102802654	Not Available	519	Open in IMG/M
3300031057\|Ga0170834_108635743	All Organisms → cellular organisms → Bacteria → Proteobacteria	631	Open in IMG/M
3300031231\|Ga0170824_105534317	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	890	Open in IMG/M
3300031545\|Ga0318541_10812945	Not Available	521	Open in IMG/M
3300031573\|Ga0310915_11252314	Not Available	512	Open in IMG/M
3300031679\|Ga0318561_10711611	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	552	Open in IMG/M
3300031682\|Ga0318560_10255867	Not Available	941	Open in IMG/M
3300031719\|Ga0306917_10315970	Not Available	1209	Open in IMG/M
3300031719\|Ga0306917_10764120	All Organisms → cellular organisms → Bacteria → Proteobacteria	758	Open in IMG/M
3300031719\|Ga0306917_11373177	Not Available	545	Open in IMG/M
3300031744\|Ga0306918_10352513	Not Available	1142	Open in IMG/M
3300031753\|Ga0307477_10876016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	594	Open in IMG/M
3300031754\|Ga0307475_10761907	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	770	Open in IMG/M
3300031770\|Ga0318521_10631263	Not Available	649	Open in IMG/M
3300031781\|Ga0318547_10079969	Not Available	1829	Open in IMG/M
3300031897\|Ga0318520_10459110	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	783	Open in IMG/M
3300031910\|Ga0306923_10010878	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9244	Open in IMG/M
3300031945\|Ga0310913_10871354	Not Available	634	Open in IMG/M
3300031947\|Ga0310909_10120750	All Organisms → cellular organisms → Bacteria	2128	Open in IMG/M
3300031962\|Ga0307479_11119631	Not Available	753	Open in IMG/M
3300031962\|Ga0307479_11260840	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	701	Open in IMG/M
3300032001\|Ga0306922_11534514	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	665	Open in IMG/M
3300032035\|Ga0310911_10655194	Not Available	609	Open in IMG/M
3300032064\|Ga0318510_10465799	Not Available	544	Open in IMG/M
3300032076\|Ga0306924_11385949	Not Available	751	Open in IMG/M
3300032261\|Ga0306920_104244604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium pachyrhizi	516	Open in IMG/M
3300033289\|Ga0310914_10230580	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1660	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	97.46%
Host-Associated	Host-Associated	2.54%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.61%
Plants	Host-Associated → Plants	2.54%
Aquatic	Environmental → Aquatic	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.61%
Rhizoplane	Host-Associated → Plants → Rhizoplane	1.69%
Thermal Springs	Environmental → Aquatic → Thermal Springs	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	83.90%
Loam	Environmental → Terrestrial → Soil → Loam	12.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	1.69%
Hot (42-90C)	Environmental → Aquatic → Thermal Springs → Hot (42-90C)	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	42.37%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	37.29%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	9.32%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	3.39%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.54%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	1.69%
Acidic	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic	0.85%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Tropical Rainforest	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	32.20%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	22.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	14.41%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	9.32%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	4.24%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	3.39%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	2.54%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.54%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	1.69%
Iron-Sulfur Acid Spring	Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Acidic → Iron-Sulfur Acid Spring	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.85%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.85%
Tropical Rainforest Soil	Environmental → Terrestrial → Soil → Unclassified → Tropical Rainforest → Tropical Rainforest Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300004268	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 MoBio	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005363	Tropical rainforest soil microbial communities from the Amazon Forest, Brazil, analyzing deforestation - Metatranscriptome F II A100 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005554	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110	Environmental	Open in IMG/M
3300005587	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006893	Iron sulfur acid spring bacterial and archeal communities from Banff, Canada, to study Microbial Dark Matter (Phase II) - Paint Pots PPA 5.5 metaG	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010396	Terrestrial soil microbial communities with excess Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-175-2	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012198	Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaG	Environmental	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012582	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_20_16 metaG	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300020583	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-M	Environmental	Open in IMG/M
3300021151	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_06_16RNAfungal (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300021168	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021180	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-O	Environmental	Open in IMG/M
3300021404	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-O	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021479	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022498	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-H-32-O (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026527	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_151 (SPAdes)	Environmental	Open in IMG/M
3300027874	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031682	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f22	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031781	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f20	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Ga0066398_100639511	3300004268	Tropical Forest Soil	MAGGRTGRRSELSQIDVLLYLVENRPGCSALVLSQAIYGDEASELRVQQDLLKLVSSGEIECRANGSLSHPPSYHPIPLRR*
Ga0066395_104812112	3300004633	Tropical Forest Soil	GSGISGGRTGRRSELAQIDVLLYLVENGLGRSALELAQAIYGEEGSDLRVQQDLMRLVGSGEIERSGIGSLADPHTYYPIPLRRQA*
Ga0066388_1009012702	3300005332	Tropical Forest Soil	MRGSGTSVNRTGHRSELAQIDVLLHLIENGPGRFASELAQAIYGEAATELRVQQDLIPLISSGEIECRGIGSLRDPHG*
Ga0066388_1025192191	3300005332	Tropical Forest Soil	MAGGRTGRRSELSQIDVLLYLVENRPGCSALELSQAIYGDEASELRVQQDLLRLVSSGEIERRANGSLSHPPSYYPIPLRRQE*
Ga0066388_1049258411	3300005332	Tropical Forest Soil	MRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALELAQAIYGEGATELGIEQDLVRLISSGEIERCGIGGVTDPHSYYAVPLRRQV*
Ga0066388_1068067801	3300005332	Tropical Forest Soil	GSGTVASRTGRRSELVQIDVLLYLVENRPGLSGLELAKAISGLGATELRIQQDLVRLISSGEIERRGIGSLTDPHSYYPVPLRR*
Ga0008090_156990613	3300005363	Tropical Rainforest Soil	MRGSVISGGRTGRRSELAQIDVLLYLVENGLGRSALELAQAIYGERASELRVQQDLMRLVGAGEIESSGIGSLTDPHTYYPVPLRRQA*
Ga0070711_1019220331	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MRGSGTDVSRTGCRSELAQIDVLLYLIENEPSRSALELAQAIYGGGTTELRVRQDLIRLVSSGEIERRGIGSLTDPHTYHPIPSRRPG*
Ga0066661_109592371	3300005554	Soil	MRGSRIAGGRTGRRSELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSL
Ga0066654_106844792	3300005587	Soil	GRTGRRSELSQIEALLYLVENRPGRSALELSQAIHGDEAGELRVRQDLEKLVSSGEIERRGIGSLSDPHSYYPIPLRRQE*
Ga0066903_1007104152	3300005764	Tropical Forest Soil	MRGSGVAGGRTGRRSELSQTDVLLYLVENGPGRSALELAQAIYGESGSDLRVQQDLMRLVGSGEIERSGIGSLADPHTYYPVPLRRQA*
Ga0066903_1013257042	3300005764	Tropical Forest Soil	MRGSVISGGRTGRRSELAQIDVLLYLVENGLGRSALELAQAIYGERASELRVQQDLMRLVGAGEIESSGIGSLTDPRTYYPVPLRRQA*
Ga0066903_1025835773	3300005764	Tropical Forest Soil	MRASGTGTRRTGRRSELAQIDVLLYLVENRPGRSALGLSQAIYGDEAGELRVRQDLGRLVSSGEIECRTNGSLTDPHAYYPVPLRRQV*
Ga0066903_1038698462	3300005764	Tropical Forest Soil	FLAGDVALRASAPYADPGAKSGAMRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALELAQAINGERATELSVEQDLVRLVSSGEIERRGIGSLTDPHSYYAVPLRRQV*
Ga0070712_1005425931	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	SELSQIDVLLYLVESQPGRSALELSQAIYGDEASELRVRQDLLKLVSCGEIECRANGSLSHPPSYYPRRTAA*
Ga0070712_1016738872	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	GAMRGARMAGGRTGRRSELSQIDVLLYLVENRPGCSALVLSQAIYGDEASELRVQQDLLKLVSSVEIECRANGRLSYPPSYYPIPLRRQE*
Ga0073928_105373953	3300006893	Iron-Sulfur Acid Spring	MSGGRTGRRSELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSAEIECRTNGSLNHPPSYFPIPLRRQE*
Ga0079219_112824311	3300006954	Agricultural Soil	IGSQSEGAMRGSRIAGGWTGLRSELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHPPSYFPIPLRRQE*
Ga0099795_105946981	3300007788	Vadose Zone Soil	MLALYADPRTTGGTMRGGVSRTGRRSELAQIEVLLYLVENEPARSALELAQAIYGAGATELSVQQDLMRLVSSGEIERRGMGSLTDPHSYYAVPRRQV*
Ga0099792_103487812	3300009143	Vadose Zone Soil	AGGRTGRRSELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHPLSYFPIPLRRQE*
Ga0126374_106782781	3300009792	Tropical Forest Soil	LAQIDVLLYLVENGLGRSALELAQAIYGERGSELRVQQDLMRLVGGGEIESSGIGSPTDPHTYYPVPLRRQA*
Ga0126384_108917941	3300010046	Tropical Forest Soil	LAQIDVLLYLVENGLGRSALELAQAIYGERASELRVQQDLMRLVGAGEIESSGIGSLTDPRTYYPVPLRRQA*
Ga0126373_102882984	3300010048	Tropical Forest Soil	MPRSRTSGRRTGRRSELKQIDVLLYLIENAPGRSELELSQAMYGDASSHLRVQQDLARLVSSGEIERRGIGSLTNSHSYYPVPSRRLA*
Ga0126373_105789212	3300010048	Tropical Forest Soil	MRGSGVAGGRTGRLSELSQTDVLLYLVENGPGRSALELAQAIYGESGSDLRVQQDLMRLVGSGEIERSGIGSLADPHTYYPVPLRRQA*
Ga0126373_106163041	3300010048	Tropical Forest Soil	LAQIDVLLYLVENGLGRSALELAQAIYGERGSELRVQQDLMRLVGAGEIENSGIGSLTDPHTYYPVPLRRQA*
Ga0126370_109638601	3300010358	Tropical Forest Soil	MAGGRTGRRSELSQIDVLLYLIENRPGCSALELSQAIYGDEASELRVQQDLLRLVSSGEIERRANGSLSHPPSYYPIPLRRQE*
Ga0126370_120240452	3300010358	Tropical Forest Soil	LLYLIENRPGRSALELSQVINGERATELSVEQDLVRLVSSGEIERRGIGSLTDPHSYYAVPLRRQV*
Ga0126376_105892621	3300010359	Tropical Forest Soil	LAQIDVLLYLVENGLGRSALELAQAIYGERGSELRVQQDLMRLVGAGEIESSGIGSITDPRTYYPVPLRRQA*
Ga0126372_112810012	3300010360	Tropical Forest Soil	MRGSGVAGGRTGRRSELSQTDVLLYLVENGPGRSALELAQAIYGEEGSDLRVQQDLMRLVGSGEIERSGIGSLADPHTYYPVPRRRQA*
Ga0126372_131668161	3300010360	Tropical Forest Soil	AASARSGARSRFLAGDVALRASAPYADPGAKSGAMRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALELAQAINGERATELSVEQDLVRLVSSGEIERRGIGSLTDPHSYYAVPLRRQV*
Ga0126378_102073491	3300010361	Tropical Forest Soil	VALRASAPYADPGAKSGAMRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALELAQAINGERATELSVEQDLVRLVSSGEIERRGIGSLTDPHSYYAVPLRRQV*
Ga0126378_113155431	3300010361	Tropical Forest Soil	LSQTDVLVYLVENGPGRSALELAQAIYGEEGSDLRVQQDLMRLVGTGEIERSGIGNLTDPHTYYPIPLRRQA*
Ga0126378_117529181	3300010361	Tropical Forest Soil	AQIEVLLYLVENGRGGSALDLAQAIYGEGATELRVQQDLVRLVSSGEIERRGLGTLTDPHSYHSVPLRRQV*
Ga0126378_123430332	3300010361	Tropical Forest Soil	LAQIDVLLYLIENRPGRSALELAQAIYGEGATELGVEQDLVRLVSSGEIERHGTGSLTDP
Ga0126379_101390042	3300010366	Tropical Forest Soil	LAQIDVLLHLVENGNGRSALELSEAIYGYGSSELRVQQDLMRLISSGEIERRGIGSLTDPHTYHSVPLRR*
Ga0126379_121959241	3300010366	Tropical Forest Soil	LAQIDVLLYLLENGLGRSALELAQAIYGERGSELRVQQDLMRLVGSGEIESSGIGSLTDPHTYYPIPLRRQA*
Ga0126379_137188371	3300010366	Tropical Forest Soil	LAQIDVLLYLVENGLGRSALELAQAIYGERASELRVQQDLMRLVGAGEIESSGIGSLTDPRTY
Ga0126381_1000256726	3300010376	Tropical Forest Soil	MLRRAARPHRLVGGQSEGAMRGSGRTGRRSELSQIDVLLYLVENRPGCSALELSQAIHGYEASELRVLQDLGRLVSSGEIECRTIESLLDPHSYYPIPLRRQE*
Ga0126381_1002469364	3300010376	Tropical Forest Soil	LAQIDVLLHLVENGNGRSALELSEAIYGYGSSELRVQQDLMRLISSGEIERRGIGSLTDPHSYHSVPLRR*
Ga0126381_1002987801	3300010376	Tropical Forest Soil	GAMRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALELAQAINGERATELSVEQDLVRLVSSGEIERRGIGSLTDPHSYYAVPLRRQV*
Ga0126381_1005740924	3300010376	Tropical Forest Soil	LSQTDVLVYLVENGPGRSALELAQAIYGEEGSDLRVQQDLMRLVGSGEIERSGIGNLTDPHTYYPVPRRRQA*
Ga0126381_1011536601	3300010376	Tropical Forest Soil	GTMRGSGISRGRTGRRSELAQIDVLLYLVENGLGRSALELAQAIYGERGSELRVQQDLMRLVGAGEIENSGIGSLTDPHTYYPVPLRRQA*
Ga0126381_1011664792	3300010376	Tropical Forest Soil	LAQIDVLLHLIENGPGRFALELAQAIYGEAATELRVQQDLIRLISSGEIECRGIGSLRDPHG*
Ga0126381_1016455932	3300010376	Tropical Forest Soil	MRASGTGTRRTGRRSELAQIDVLLYLVENRPGRSALRLSQAIYGDEAGELRVRQDLGRLVSSGEIECRTNGSLTDPHAYYPVPLRRQV*
Ga0126381_1035424682	3300010376	Tropical Forest Soil	LLYLVENGLGRSALELAQAIYGERGSELRVQQDLMRLVGAGEIESSGIGSLTDPRTYYPVPLRRQA*
Ga0126381_1038000452	3300010376	Tropical Forest Soil	LGQIDVLLYLVENGPGRSALALAQAIYSDLGGELRVQQDLIRLISSGEIERRGIGSLTDPHTHYPVPLRRQA*
Ga0126381_1041580492	3300010376	Tropical Forest Soil	MRGSGTETRRTGRRSELAQIDVLLYLVENRPGRSALELSQAIYGDEAGELRVRQDLGKLVSSGKIECRTNGSPTDPHSYYPVPLRRQV*
Ga0134126_127462711	3300010396	Terrestrial Soil	LSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHP
Ga0126383_128559532	3300010398	Tropical Forest Soil	MAGGRTGRRSELSQIDVLLYLVENRPGCSALELSQAIYGDEASELRVQQDLLRLVSSGEIERRANGSLSHPPSYYPIPLRKQE*
Ga0137364_100538591	3300012198	Vadose Zone Soil	LEQIDVLLYLVENGAGRSALELSQAIYGEGATELRMQQDLLRLVSSGEIERRGMGRPTDPHSYFPVPLRRQV*
Ga0150985_1042852311	3300012212	Avena Fatua Rhizosphere	ALYADPRTTGGTMRGGVSRTGRRSELAQIEVLLYLVENEPARSALELAQAIYGAGATELRVQQDLMRLVSSGEIERRGMGSLTDPHSYYAVPRRQV*
Ga0150985_1158171761	3300012212	Avena Fatua Rhizosphere	LSQIEALLYLVENRPGRSALELSQAIHGDEAGELRVRQDLEKLVSSGEIERRGIGSLSDPHSVLSDPFTRQV*
Ga0150984_1039195892	3300012469	Avena Fatua Rhizosphere	LAQIEVLLYLVENEPARSALELAQAIYGAGATELRVQQDLMRLVSSGEIERRGMGSLTDPHSYYAVPRRQV*
Ga0137358_110328581	3300012582	Vadose Zone Soil	LAQIEVLLYLVENEPGRSALELAQAIYGAGATELRVQQDLMRLVSSGEIERRGMGSLTDPHSYYAVLRRQV*
Ga0126375_101728631	3300012948	Tropical Forest Soil	MAGGRTGRRSELSLIDVLLYLVENRPGCSALVLSQAIYGDEASELRVQQDLLKLVSSGEIECRANGSLSHPPSYHPIPLRR*
Ga0126369_105847642	3300012971	Tropical Forest Soil	LAQIDVLLYLVENGLGRWALELAQAIYGEEGSDLRVQQDLMRLVGSGEIERSGIGSLADPHTYYPVPLRRQA*
Ga0126369_134728691	3300012971	Tropical Forest Soil	PAASARSGARSRFLAGDVALRASAPYADPGAKSGAMRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALELAQAINGERATELSVEQDLVRLVSSGEIERRGIGSLTDPHSYYAVPLRRQV*
Ga0182036_105572002	3300016270	Soil	MHGSRTPGGRTGRRSELNQIDVLLYLIENGPGRSDLELAQAIYGDGTSQLRVQQDLTKLVSSGEIERRSIGSLTDPHSHHPVPMRSPV
Ga0182041_100644981	3300016294	Soil	SELAQIDVLMYLIENRPGCSALELAQAIYGEGATELGVEQDLVRLVSSGEIERRGIGSLTDPHSYYAVPLRRQV
Ga0182033_104121521	3300016319	Soil	MRGSGTFVRLTGRRSELAQIDVLLYLIENRPGRSALELAQAINGERATELSVEQDLVRLVSSGEIERRGIGRLTDPHSYYAVPLRRQV
Ga0182033_104245712	3300016319	Soil	MHGSRTPGGRTGRRSELNQIDALLYLIENGPGRSDLELAEAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHPVPMRSPV
Ga0182032_107042992	3300016357	Soil	MRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALDLAQAINGEGATELGVEQDLVRLVSFGEIERCGIGSLTDPHSYYAVPLRRQV
Ga0182034_112006922	3300016371	Soil	ELNQIDVLLYLIENGPGRSDLELAQAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHRVPMRSPV
Ga0182040_114638181	3300016387	Soil	MPRSRTSGRRTGRRSELKQIDVLLYLIENGPGRSDLELSQAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHRVPMRSPV
Ga0182039_107461021	3300016422	Soil	TGRRSELNQIDVLLYLIENGPGRSDLELAQAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHRVPMRSPV
Ga0182039_107579441	3300016422	Soil	MRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALDLAQAINGEGATELGVEQDLVRLVSSGEIERRGIGRLTDPHSYYAVPLRRQV
Ga0210407_112329291	3300020579	Soil	MRGSGTSARRTGRRSELAQIDVLLYLVENGPGRSALELSQAIYGERATELRVQQDLTRLVSSDEIDRRGIGSLIEPDTYHPIPLRRRD
Ga0210403_102071802	3300020580	Soil	CAGSYPPHKLIGSQSEGAMRGSRIAGGRTGRRSELSQIDVLLHLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHPPSYFPIPLRRQE
Ga0210401_103219653	3300020583	Soil	MRGARMAGGRTGRRSELSQIDVLLYLVENRPGCSALVLSQAIYGDEASELRVQQDLLKLVSSGEIECRANGSLS
Ga0210401_107962511	3300020583	Soil	SELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHPPSYFPIPFHPTCPLARGPALSE
Ga0210401_110807321	3300020583	Soil	MNGSRAARFGGRTGRRSELQQIDVLLYLIENGPGRSETELSEAIYGIPGYPQRVQQDLVRLVSSGEIKRRGVGSLTDPHSYYSVPLRRQA
Ga0179584_10937831	3300021151	Vadose Zone Soil	MRGGVSRTGRRSELAQIEVLLYLVENEPGRSALELAQAIYGAGATELRVQQDLMRLVSSGEIERRGMGSLTDPHSYYAVPRRQV
Ga0210406_104639461	3300021168	Soil	MRGARMAGGRTGRRSELSQIDVLLYLVENRPGCSALVLSQAIYGDEASELRVQQDLLKLVSSGEIECRANGRLSYPPSYYPIPLRRQE
Ga0210406_105827721	3300021168	Soil	PGGRTGRRSELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHPPSYFPIPFHPTCPLARGPALSE
Ga0210405_100742852	3300021171	Soil	MRGARMAGGRTGRRSELSQIDVLLYLVENRPGCSALVLSQAIYGDEASELRVQQDLLKLVSSGEIECRANGSLSHPPSYYPIPLRRQE
Ga0210396_114129711	3300021180	Soil	MNGSRAARFGGRTGRRSALEQIEVLLYLVENGPGRSEAELSEAIYGVPGYPQRLQQDLLKLVSAGEIERQGEGSLADPHTYHPIRLRRQVSSDGPLR
Ga0210389_102369124	3300021404	Soil	MRGSGTSARRTGRRSELAQIDVLLYLVENGPGRSALELSQAIYGERATELRVQQDLTRLVSSDEIDRRGIGSLIEPDTYHPIPLRRQV
Ga0210384_118141732	3300021432	Soil	MRGSGTSARRTGRRSELAQIDVLLYLVENGPGRSALELSQAIYGERATELRVQQDLTRLVSSDEIDRRGIGSLIEPDTYHPIPLRRQ
Ga0210410_108036742	3300021479	Soil	MRGSGTSARRTGRRSELAQIDVLLYLVENGPGRSALELSQAIYGERATELRVQQDLTRLVSSDEIERRGIESLIEPDTYHPIPLRRRD
Ga0210410_108580041	3300021479	Soil	MRGARMAGGRTGRRSELSQIDVLLYLVENRPGCSALVLSQAIYGDEASELRVQQDLLKLVSSGEIECRANGRLSYPPSNYPIPLRRQE
Ga0126371_100216208	3300021560	Tropical Forest Soil	MRGSGTTVSRTGRRSGLAQIDVLLHLVENGNGRSALELSEAIYGYGSSELRVQQDLMRLISSGEIERRGIGSLTDPHSYHSVPLRR
Ga0126371_107928491	3300021560	Tropical Forest Soil	MRGSGTVASRTGRRSELVQIDVLLYLVENRPGLSGLELAQAISGLGATELRIQQDLVRLISSGEIERRGIGSLTDPHSYYPVPLRR
Ga0126371_111429162	3300021560	Tropical Forest Soil	MRASGTGTRRTGRRSELAQIDVLLYLVENRPGRSALRLSQAIYGDEAGELRVRQDLGRLVSSGEIECRTNGSLTDPHAYYPVPLRRQV
Ga0126371_116494792	3300021560	Tropical Forest Soil	MRGSGISGGRTGRRSELAQIDVLLYLVENGLGRSALELAQAIYGERGSELRVQQDLMRLVGAGEIERSGIGSLTDPHTYYPVPLRRQA
Ga0126371_116804411	3300021560	Tropical Forest Soil	MAGGRTGRRSELSQIDVLLYLIENRPGCSALELSQAIYGDEASELRVQQDLLRLVSSGEIERRANGSLSHPPSYYPIPLRRQE
Ga0126371_129597331	3300021560	Tropical Forest Soil	MHGSGVAGGRTGRRSELSQTDVLVYLVENGPGRSALELAQAIYGEEGSDLRVQQDLMRLVGSGEIERSGIGNLTDPHTYYPVPRRRQA
Ga0126371_134877952	3300021560	Tropical Forest Soil	MRGLGMSGGRTGRRSELAQLNVLLYLVENGPGRSGLELAQAIYGEVGSELRMQQDLMRLVGSGEIERRGIGSLTDPHTYYPVPLRRQA
Ga0242644_10184882	3300022498	Soil	TMRGSGTSARRTGRRSELAQIDVLLYLVENGPGRSALELSQAIYGERATELRVQQDLTRLVSSDEIDRRGIGSLIEPDTYHPIPLRRRD
Ga0207693_100931102	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	MRGSRIAGGRTGRRSELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHPPSYFPIPLRRQE
Ga0209059_10387781	3300026527	Soil	GAMNGSRTAKFGGRTGRRSELAQIDVLLYLIENDPGRSAVELAQAIYGEGATELRVQQDLMRLVSSGEIECRGIGSLTDPRSYYPVPRRQV
Ga0209465_102138291	3300027874	Tropical Forest Soil	LSQTDVLVYLVENGPGRSALELAQAIYGESGSDLRVQQDLMRLVGSGEIERSGIGSLADPHTYYPIPLRRQA
Ga0170834_1028026542	3300031057	Forest Soil	MNGSRAARFGGGTGRRSELQQIDVLLYLIENGPGRSETELSEAIYGVPGYPQRLQQDLLKLVSAGEIERQGEGSLADPHSYYPVPLRRQV
Ga0170834_1086357431	3300031057	Forest Soil	RTDRAGRFGGRTGRRSELQQIDVLLYLIENGPGRSETELSEAIYGIPGYPRRVQQDLVRLVSSGEIKRRGVGSLTDPHSYYSVPSRRQA
Ga0170824_1055343171	3300031231	Forest Soil	RTDRAGRFGGRTGRRSELQQIDVLLYLIENGPGRSETELSEAIYGIPGYPRRVQQDLVRLVSSGEIKRRGVGSLTDPHSYYSVPLRRQA
Ga0318541_108129451	3300031545	Soil	LSQTDVLVYLVENGPGRSALELAQAIYGEEGSDLRVQQDLMRLVGSGEIERGGIGSLADPHTYY
Ga0310915_112523141	3300031573	Soil	MHGSGVAGGRTGRRSELSQTDVLVYLVENGPGRSALELAQAIYGEEGSDLRVQQDLMRLVGSGEIERGGIGSLADPHTYYPVSRRRQA
Ga0318561_107116111	3300031679	Soil	MHGSRTPGRRTGRRSELNQIDVLLYLIENGPGRSDLELAQAIYGDGTSQLRVQQDLTKLVSSGEIERRSIGSLTDPHSHHPVPMRSPV
Ga0318560_102558672	3300031682	Soil	MHGSRTPGGRTGRRSELNQIDVLLYLIENGPGRSDLKLAQAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHRVPMRSPV
Ga0306917_103159702	3300031719	Soil	MHGSRTPGGRTGRRSELNQIDVLLYLIENGPGRSDLELSQAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHRVPMRSPV
Ga0306917_107641201	3300031719	Soil	LNQIDALLYLIENGPGRSDLELAEAIYGDGTSQLRVQQDLARLVSSGEIGAGALAA
Ga0306917_113731771	3300031719	Soil	MRGSGTVRRTGRRSELAQIDVLLYLIENRPGRSALELAQAINGERATELSVEQDLVRLVSSGEIERRGIGRLTDPHSYYAVPLRRQV
Ga0306918_103525132	3300031744	Soil	LSQTDVLVYLVENGPGRSALELAQAIYGEEGSDLPVQQDLMRLVGSGEIERGGIGSLADPHTYYPVSRRRQA
Ga0307477_108760162	3300031753	Hardwood Forest Soil	LEQIEVLVYLVENGPGRSETELSEAIYGIPGYPQRLQQDLLKLVSAGEIEREGEGSLADPHTYHPIRLRRQVSSDGPLR
Ga0307475_107619071	3300031754	Hardwood Forest Soil	LQQSDVLLYLVENGPGRSELELSEAIYGAPGYPQRLQQDLLRLVSSGGIERRGEGSPADPYIYHPIRSRRPV
Ga0318521_106312631	3300031770	Soil	MRGSGTFVRLTGRRSELAQIDVLLYLIENRPGRSALDLAQAINGEGATELGVEQDLVRLVSSGEIERRGIGSLTDPHSYYAVPLRRQV
Ga0318547_100799692	3300031781	Soil	MRGSGVAGGRTGRRSELSQTDVLVYLVENGPGRSALELAQAIYGEEGSDLRVQQDLMRLVGSGEIERGGIGSLADPHTYYPVSRRRQA
Ga0318520_104591101	3300031897	Soil	MHGSRTPGRRTGRRSELNQIDVLLYLIENGPGRSDLELAQAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHPVPMRSPV
Ga0306923_1001087812	3300031910	Soil	MRGSGTFVRLTGRRSELAQIDVLLYLIANRPGRSALDLAQAINGEGATELGVEQDLVRLVSSGEIERRGIGRLTDPHSYYAVPLRRQV
Ga0310913_108713542	3300031945	Soil	MHGSRTPGGRTGRRSELNQIDVLLYLIENGPGRSDLELAQAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHRVPMRSPV
Ga0310909_101207502	3300031947	Soil	MRGSGTFVRRTGRRSELAQIDVLLYLIENRPGRSALDLAQAINGEGATELGVEQDLVRHVSSGEIERRGIGSLTDPHSYYAVPLRRQV
Ga0307479_111196311	3300031962	Hardwood Forest Soil	MRGSRIAGGRTGRRSELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHPLSYFPIPLRRQE
Ga0307479_112608401	3300031962	Hardwood Forest Soil	AGGRTGRRSELSQIDVLLYLVESRPGRSALELSQAIYGDEASELRVRQDLGRLVSSGEIECRTNGSLNHPLSYFPIPLRRQE
Ga0306922_115345141	3300032001	Soil	MPRSRTSGRRTGRRSELKQIDVLLYLIENAPGRSEMELSQAMCGDASSHLRVQQDLARLVSSGEIERRGIGSLTNSHSYYPVPSRRLA
Ga0310911_106551941	3300032035	Soil	MRGSGTFVRLTGRRSELAQIDVLLYLIENRPGRSALDLAQAINGEGATELGVEQDLVRHVSSGEIERRGIGSLTDPHSYYAVPL
Ga0318510_104657991	3300032064	Soil	MRGSGTFVRLTGRRSELAQIDVLLYLIENRPGRSALDLAQAINGEGATELGVEQDLVRHVSSGEIERRGIGSLT
Ga0306924_113859492	3300032076	Soil	PGGRTGRRSELNQIDVLLYLIENGPGRSDLELAQAIYGDGTSQLRVQQDLTKLVSSGEIERRSIGSLTDPHSHHPVPMRSPV
Ga0306920_1042446041	3300032261	Soil	MHGSRTPGGRTGRRSELNQIDVLLYLIENGPGRSDLELAQAIYGDGTSQLRVQQDLARLVSSGEIERRGIGSLTDPHSYHPVPMR
Ga0310914_102305802	3300033289	Soil	MRGSGTFVRLTGRRSELAQIDVLLYLIENRPGRSALDLAQAINGEGATELGVEQDLVRHVSSGEIERRGIGSLTDPHSYYAVPLRRQV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076342

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences