Metagenome / Metatranscriptome Family F076411

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076411
Family Type	Metagenome / Metatranscriptome
Number of Sequences	118
Average Sequence Length	119 residues
Representative Sequence	ATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD
Number of Associated Samples	90
Number of Associated Scaffolds	118

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	23.08 %
% of genes near scaffold ends (potentially truncated)	59.32 %
% of genes from short scaffolds (< 2000 bps)	83.05 %
Associated GOLD sequencing projects	81
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.39

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (64.407 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere (15.254 % of family members)
Environment Ontology (ENVO)	Unclassified (48.305 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (77.966 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	Yes	Secondary Structure distribution:	α-helix: 9.22% β-sheet: 16.31% Coil/Unstructured: 74.47%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.39
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.39
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 118 Family Scaffolds
PF02211	NHase_beta	4.24
PF12773	DZR	3.39
PF00300	His_Phos_1	2.54
PF07411	DUF1508	1.69
PF00484	Pro_CA	1.69
PF12244	DUF3606	1.69
PF01734	Patatin	0.85
PF02705	K_trans	0.85
PF00194	Carb_anhydrase	0.85
PF13279	4HBT_2	0.85
PF01435	Peptidase_M48	0.85
PF13840	ACT_7	0.85
PF00589	Phage_integrase	0.85
PF02979	NHase_alpha	0.85
PF00067	p450	0.85
PF07969	Amidohydro_3	0.85
PF02803	Thiolase_C	0.85
PF01381	HTH_3	0.85
PF01272	GreA_GreB	0.85
PF01904	DUF72	0.85
PF14023	DUF4239	0.85
PF02600	DsbB	0.85
PF13380	CoA_binding_2	0.85
PF01070	FMN_dh	0.85
PF13544	Obsolete Pfam Family	0.85
PF07963	N_methyl	0.85
PF03466	LysR_substrate	0.85

COG ID	Name	Functional Category	% Frequency in 118 Family Scaffolds
COG0288	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	1.69
COG3422	Uncharacterized conserved protein YegP, UPF0339 family	Function unknown [S]	1.69
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.85
COG0183	Acetyl-CoA acetyltransferase	Lipid transport and metabolism [I]	0.85
COG0782	Transcription elongation factor, GreA/GreB family	Transcription [K]	0.85
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.85
COG1495	Disulfide bond formation protein DsbB	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1752	Predicted acylesterase/phospholipase RssA, containd patatin domain	General function prediction only [R]	0.85
COG1801	Sugar isomerase-related protein YecE, UPF0759/DUF72 family	General function prediction only [R]	0.85
COG2124	Cytochrome P450	Defense mechanisms [V]	0.85
COG3158	K+ uptake protein Kup	Inorganic ion transport and metabolism [P]	0.85
COG3338	Carbonic anhydrase	Inorganic ion transport and metabolism [P]	0.85
COG3621	Patatin-like phospholipase/acyl hydrolase, includes sporulation protein CotR	General function prediction only [R]	0.85
COG4667	Predicted phospholipase, patatin/cPLA2 family	Lipid transport and metabolism [I]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
All Organisms	root	All Organisms	35.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
cellular organisms	root	All Organisms → cellular organisms	35.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	35.59 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	27.97 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	15.25 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
unclassified Betaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria	7.63 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	5.93 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.39 %
Betaproteobacteria bacterium MOLA814	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	3.39 %
Burkholderiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	3.39 %
Oxalobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae	0.85 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.85 %
Streptomycetales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales	0.85 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.39 %
Betaproteobacteria bacterium MOLA814	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	3.39 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2.54 %
Herminiimonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas	0.85 %
Streptomycetaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae	0.85 %
Variovorax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax	0.85 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.39 %
Betaproteobacteria bacterium MOLA814	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	3.39 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2.54 %
unclassified Variovorax	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax	0.85 %
Streptomyces	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces	0.85 %
unclassified Herminiimonas	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas → unclassified Herminiimonas	0.85 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.39 %
Betaproteobacteria bacterium MOLA814	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	3.39 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2.54 %
unclassified Streptomyces	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces	0.85 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	0.85 %
Herminiimonas sp. CN	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas → unclassified Herminiimonas → Herminiimonas sp. CN	0.85 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	64.41 %
Betaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	3.39 %
Betaproteobacteria bacterium MOLA814	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	3.39 %
Cupriavidus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	2.54 %
Streptomyces sp. Amel2xE9	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Amel2xE9	0.85 %
Variovorax sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	0.85 %
Herminiimonas sp. CN	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas → unclassified Herminiimonas → Herminiimonas sp. CN	0.85 %
Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	0.85 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001991\|JGI24743J22301_10062499	Not Available	769	Open in IMG/M
3300002239\|JGI24034J26672_10114478	Not Available	517	Open in IMG/M
3300003321\|soilH1_10220737	All Organisms → cellular organisms → Bacteria → Proteobacteria	1825	Open in IMG/M
3300003324\|soilH2_10245864	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	1412	Open in IMG/M
3300004114\|Ga0062593_102019977	Not Available	641	Open in IMG/M
3300004479\|Ga0062595_100638701	Not Available	839	Open in IMG/M
3300004803\|Ga0058862_10037325	Not Available	1480	Open in IMG/M
3300005327\|Ga0070658_10507245	Not Available	1042	Open in IMG/M
3300005328\|Ga0070676_10041156	All Organisms → cellular organisms → Bacteria → Proteobacteria	2678	Open in IMG/M
3300005330\|Ga0070690_100678034	Not Available	790	Open in IMG/M
3300005334\|Ga0068869_100921364	Not Available	757	Open in IMG/M
3300005336\|Ga0070680_100031862	All Organisms → cellular organisms → Bacteria	4239	Open in IMG/M
3300005338\|Ga0068868_100442701	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1129	Open in IMG/M
3300005339\|Ga0070660_100024346	All Organisms → cellular organisms → Bacteria → Proteobacteria	4490	Open in IMG/M
3300005339\|Ga0070660_101300812	Not Available	617	Open in IMG/M
3300005341\|Ga0070691_10579696	All Organisms → cellular organisms → Bacteria	659	Open in IMG/M
3300005344\|Ga0070661_100115577	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	2007	Open in IMG/M
3300005345\|Ga0070692_11295496	Not Available	522	Open in IMG/M
3300005347\|Ga0070668_101164081	Not Available	698	Open in IMG/M
3300005353\|Ga0070669_101873675	Not Available	524	Open in IMG/M
3300005365\|Ga0070688_100481757	Not Available	933	Open in IMG/M
3300005366\|Ga0070659_101785415	Not Available	551	Open in IMG/M
3300005434\|Ga0070709_10509417	All Organisms → cellular organisms → Bacteria → Proteobacteria	915	Open in IMG/M
3300005435\|Ga0070714_100011838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	6933	Open in IMG/M
3300005435\|Ga0070714_100206685	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1798	Open in IMG/M
3300005435\|Ga0070714_101713556	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Streptomycetales → Streptomycetaceae → Streptomyces → unclassified Streptomyces → Streptomyces sp. Amel2xE9	614	Open in IMG/M
3300005436\|Ga0070713_100419170	All Organisms → cellular organisms → Bacteria	1253	Open in IMG/M
3300005436\|Ga0070713_100998494	All Organisms → cellular organisms → Bacteria	807	Open in IMG/M
3300005530\|Ga0070679_100320889	Not Available	1498	Open in IMG/M
3300005535\|Ga0070684_102338669	Not Available	504	Open in IMG/M
3300005543\|Ga0070672_100713513	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	878	Open in IMG/M
3300005547\|Ga0070693_100043024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	2549	Open in IMG/M
3300005563\|Ga0068855_100514135	All Organisms → cellular organisms → Bacteria	1300	Open in IMG/M
3300005564\|Ga0070664_100066303	All Organisms → cellular organisms → Bacteria	3083	Open in IMG/M
3300005564\|Ga0070664_100445142	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	1189	Open in IMG/M
3300005577\|Ga0068857_100912464	Not Available	843	Open in IMG/M
3300005578\|Ga0068854_100018180	All Organisms → cellular organisms → Bacteria → Proteobacteria	4715	Open in IMG/M
3300005578\|Ga0068854_100385921	Not Available	1155	Open in IMG/M
3300005578\|Ga0068854_100588780	Not Available	948	Open in IMG/M
3300005578\|Ga0068854_101951153	Not Available	540	Open in IMG/M
3300005614\|Ga0068856_100168699	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Variovorax → unclassified Variovorax → Variovorax sp.	2200	Open in IMG/M
3300005614\|Ga0068856_100810628	Not Available	956	Open in IMG/M
3300005719\|Ga0068861_101348592	Not Available	695	Open in IMG/M
3300005834\|Ga0068851_10032808	Not Available	2584	Open in IMG/M
3300005841\|Ga0068863_100120660	All Organisms → cellular organisms → Bacteria → Proteobacteria	2499	Open in IMG/M
3300006031\|Ga0066651_10518302	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	631	Open in IMG/M
3300006173\|Ga0070716_100922710	Not Available	685	Open in IMG/M
3300006175\|Ga0070712_100611652	Not Available	923	Open in IMG/M
3300006237\|Ga0097621_100965803	Not Available	796	Open in IMG/M
3300006358\|Ga0068871_100062721	All Organisms → cellular organisms → Bacteria → Proteobacteria	3038	Open in IMG/M
3300006755\|Ga0079222_11862819	Not Available	585	Open in IMG/M
3300006804\|Ga0079221_10029110	All Organisms → cellular organisms → Bacteria → Proteobacteria	2323	Open in IMG/M
3300006804\|Ga0079221_10341879	Not Available	899	Open in IMG/M
3300006954\|Ga0079219_11660883	Not Available	589	Open in IMG/M
3300009174\|Ga0105241_12221351	Not Available	545	Open in IMG/M
3300009174\|Ga0105241_12315839	Not Available	535	Open in IMG/M
3300009551\|Ga0105238_11546986	Not Available	693	Open in IMG/M
3300009551\|Ga0105238_11560968	Not Available	690	Open in IMG/M
3300010375\|Ga0105239_11153435	All Organisms → cellular organisms → Bacteria → Proteobacteria	892	Open in IMG/M
3300010375\|Ga0105239_11727478	Not Available	725	Open in IMG/M
3300010400\|Ga0134122_10857713	Not Available	874	Open in IMG/M
3300010403\|Ga0134123_11894540	Not Available	652	Open in IMG/M
3300011119\|Ga0105246_11018151	Not Available	751	Open in IMG/M
3300012212\|Ga0150985_109161341	Not Available	668	Open in IMG/M
3300012212\|Ga0150985_112520492	Not Available	588	Open in IMG/M
3300012212\|Ga0150985_118258234	Not Available	977	Open in IMG/M
3300012212\|Ga0150985_119191313	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	661	Open in IMG/M
3300012212\|Ga0150985_120109094	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae	1288	Open in IMG/M
3300012469\|Ga0150984_106078030	Not Available	747	Open in IMG/M
3300012469\|Ga0150984_107199308	Not Available	714	Open in IMG/M
3300012469\|Ga0150984_120881581	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae → Cupriavidus	651	Open in IMG/M
3300012951\|Ga0164300_10105923	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	1243	Open in IMG/M
3300012958\|Ga0164299_10081790	All Organisms → cellular organisms → Bacteria → Proteobacteria	1623	Open in IMG/M
3300012960\|Ga0164301_10496998	Not Available	879	Open in IMG/M
3300012960\|Ga0164301_11038664	Not Available	647	Open in IMG/M
3300012984\|Ga0164309_10328894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	1113	Open in IMG/M
3300012989\|Ga0164305_12173805	Not Available	510	Open in IMG/M
3300013100\|Ga0157373_10161337	Not Available	1577	Open in IMG/M
3300013102\|Ga0157371_11350268	Not Available	553	Open in IMG/M
3300013104\|Ga0157370_10850087	Not Available	829	Open in IMG/M
3300013105\|Ga0157369_10620573	Not Available	1116	Open in IMG/M
3300013307\|Ga0157372_10085315	Not Available	3581	Open in IMG/M
3300014497\|Ga0182008_10456532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Oxalobacteraceae → Herminiimonas → unclassified Herminiimonas → Herminiimonas sp. CN	696	Open in IMG/M
3300014745\|Ga0157377_11189217	Not Available	590	Open in IMG/M
3300017930\|Ga0187825_10278790	Not Available	618	Open in IMG/M
3300019356\|Ga0173481_10336269	Not Available	716	Open in IMG/M
3300020075\|Ga0206349_1618791	Not Available	646	Open in IMG/M
3300020077\|Ga0206351_10891393	Not Available	680	Open in IMG/M
3300021560\|Ga0126371_10595752	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium	1254	Open in IMG/M
3300022467\|Ga0224712_10117398	Not Available	1148	Open in IMG/M
3300022467\|Ga0224712_10680085	Not Available	505	Open in IMG/M
3300025271\|Ga0207666_1037706	Not Available	752	Open in IMG/M
3300025906\|Ga0207699_10449427	All Organisms → cellular organisms → Bacteria → Proteobacteria	924	Open in IMG/M
3300025906\|Ga0207699_10676618	Not Available	755	Open in IMG/M
3300025909\|Ga0207705_11007771	Not Available	643	Open in IMG/M
3300025912\|Ga0207707_10005335	All Organisms → cellular organisms → Bacteria	11234	Open in IMG/M
3300025915\|Ga0207693_11006404	Not Available	636	Open in IMG/M
3300025916\|Ga0207663_10385107	All Organisms → cellular organisms → Bacteria → Proteobacteria	1069	Open in IMG/M
3300025921\|Ga0207652_10276849	Not Available	1514	Open in IMG/M
3300025929\|Ga0207664_10095093	All Organisms → cellular organisms → Bacteria	2451	Open in IMG/M
3300025929\|Ga0207664_12010286	Not Available	501	Open in IMG/M
3300025933\|Ga0207706_10079466	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium MOLA814	2884	Open in IMG/M
3300025941\|Ga0207711_10866584	All Organisms → cellular organisms → Bacteria → Proteobacteria	840	Open in IMG/M
3300025949\|Ga0207667_10252646	Not Available	1804	Open in IMG/M
3300025949\|Ga0207667_11815408	Not Available	573	Open in IMG/M
3300025949\|Ga0207667_12098935	Not Available	524	Open in IMG/M
3300025981\|Ga0207640_10578561	Not Available	948	Open in IMG/M
3300025981\|Ga0207640_11035757	Not Available	723	Open in IMG/M
3300025981\|Ga0207640_11532496	Not Available	599	Open in IMG/M
3300026041\|Ga0207639_11688271	Not Available	594	Open in IMG/M
3300026078\|Ga0207702_10015669	All Organisms → cellular organisms → Bacteria → Proteobacteria	6274	Open in IMG/M
3300026142\|Ga0207698_10334261	Not Available	1424	Open in IMG/M
3300031716\|Ga0310813_11069480	Not Available	738	Open in IMG/M
3300031938\|Ga0308175_101321247	Not Available	803	Open in IMG/M
3300031939\|Ga0308174_10039550	Not Available	3112	Open in IMG/M
3300031939\|Ga0308174_11155786	Not Available	659	Open in IMG/M
3300033412\|Ga0310810_10626909	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → unclassified Betaproteobacteria → Betaproteobacteria bacterium RIFCSPLOWO2_12_FULL_62_13	1024	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Host-Associated	Host-Associated	53.39%
Environmental	Environmental	46.61%

Habitat	Taxonomy	Distribution
Plants	Host-Associated → Plants	52.54%
Terrestrial	Environmental → Terrestrial	45.76%
Aquatic	Environmental → Aquatic	0.85%
Human	Host-Associated → Human	0.85%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	45.76%
Rhizosphere	Host-Associated → Plants → Rhizosphere	26.27%
Rhizoplane	Host-Associated → Plants → Rhizoplane	24.58%
Roots	Host-Associated → Plants → Roots	1.69%
Freshwater	Environmental → Aquatic → Freshwater	0.85%
Digestive System	Host-Associated → Human → Digestive System	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	25.42%
Loam	Environmental → Terrestrial → Soil → Loam	20.34%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	20.34%
Soil	Host-Associated → Plants → Rhizosphere → Soil	13.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	12.71%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	4.24%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	1.69%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	0.85%
Large Intestine	Host-Associated → Human → Digestive System → Large Intestine	0.85%

Habitat	Taxonomy	Distribution
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	20.34%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	20.34%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	14.41%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	13.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	12.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	6.78%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	4.24%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	3.39%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	1.69%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.85%
Fecal	Host-Associated → Human → Digestive System → Large Intestine → Fecal	0.85%

Habitat	Taxonomy	Distribution
Corn Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn Rhizosphere	15.25%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	10.17%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	7.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	7.63%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	5.08%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	4.24%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	4.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil	4.24%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Avena Fatua Rhizosphere	4.24%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	4.24%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	3.39%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	3.39%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	2.54%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	1.69%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	1.69%
Sugarcane Root And Bulk Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Sugarcane Root And Bulk Soil	1.69%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere	1.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Corn, Switchgrass And Miscanthus Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Miscanthus Rhizosphere	1.69%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	1.69%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere	1.69%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Host-Associated	Host-Associated → Human → Digestive System → Large Intestine → Fecal → Host-Associated	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	0.85%
Miscanthus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001991	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2	Host-Associated	Open in IMG/M
3300002239	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2	Host-Associated	Open in IMG/M
3300003321	Sugarcane bulk soil Sample H1	Environmental	Open in IMG/M
3300003324	Sugarcane bulk soil Sample H2	Environmental	Open in IMG/M
3300004114	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of AARS Block 5	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004803	Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome)	Host-Associated	Open in IMG/M
3300005327	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG	Host-Associated	Open in IMG/M
3300005328	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG	Host-Associated	Open in IMG/M
3300005330	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG	Environmental	Open in IMG/M
3300005334	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2	Host-Associated	Open in IMG/M
3300005336	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG	Environmental	Open in IMG/M
3300005338	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2	Host-Associated	Open in IMG/M
3300005339	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG	Host-Associated	Open in IMG/M
3300005341	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG	Environmental	Open in IMG/M
3300005344	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG	Host-Associated	Open in IMG/M
3300005345	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG	Environmental	Open in IMG/M
3300005347	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG	Host-Associated	Open in IMG/M
3300005353	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG	Host-Associated	Open in IMG/M
3300005365	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG	Environmental	Open in IMG/M
3300005366	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG	Host-Associated	Open in IMG/M
3300005434	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG	Environmental	Open in IMG/M
3300005435	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG	Environmental	Open in IMG/M
3300005436	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG	Environmental	Open in IMG/M
3300005530	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005543	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG	Host-Associated	Open in IMG/M
3300005547	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG	Environmental	Open in IMG/M
3300005563	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2	Host-Associated	Open in IMG/M
3300005564	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG	Host-Associated	Open in IMG/M
3300005577	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2	Host-Associated	Open in IMG/M
3300005578	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2	Host-Associated	Open in IMG/M
3300005614	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2	Host-Associated	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005834	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2	Host-Associated	Open in IMG/M
3300005841	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2	Host-Associated	Open in IMG/M
3300006031	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Angelo_100	Environmental	Open in IMG/M
3300006173	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300006237	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2)	Host-Associated	Open in IMG/M
3300006358	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2	Host-Associated	Open in IMG/M
3300006755	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Plitter	Environmental	Open in IMG/M
3300006804	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200	Environmental	Open in IMG/M
3300006954	Agricultural soil microbial communities from Georgia to study Nitrogen management - GA Control	Environmental	Open in IMG/M
3300009174	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG	Host-Associated	Open in IMG/M
3300009551	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG	Host-Associated	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010403	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-3	Environmental	Open in IMG/M
3300011119	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG	Host-Associated	Open in IMG/M
3300012212	Combined assembly of Hopland grassland soil	Host-Associated	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012951	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_226_MG	Environmental	Open in IMG/M
3300012958	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_221_MG	Environmental	Open in IMG/M
3300012960	Unamended control soil microbial communities from upstate New York, USA - Whitman soil sample_231_MG	Environmental	Open in IMG/M
3300012984	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_247_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013100	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG	Host-Associated	Open in IMG/M
3300013102	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG	Host-Associated	Open in IMG/M
3300013104	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG	Host-Associated	Open in IMG/M
3300013105	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG	Host-Associated	Open in IMG/M
3300013307	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG	Host-Associated	Open in IMG/M
3300014497	Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG	Host-Associated	Open in IMG/M
3300014745	Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG	Host-Associated	Open in IMG/M
3300017930	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SourceSoil_5	Environmental	Open in IMG/M
3300019356	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S073-202C-2 (version 2)	Environmental	Open in IMG/M
3300020075	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-5 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300020077	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022467	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025271	Switchgrass rhizosphere bulk soil microbial communities from Kellogg Biological Station, Michigan, USA, with spike-in - S5 (SPAdes)	Environmental	Open in IMG/M
3300025906	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025909	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025912	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025915	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300025916	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025921	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)	Environmental	Open in IMG/M
3300025929	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes)	Environmental	Open in IMG/M
3300025933	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025949	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes)	Host-Associated	Open in IMG/M
3300025981	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026041	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026078	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes)	Host-Associated	Open in IMG/M
3300026142	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes)	Host-Associated	Open in IMG/M
3300031716	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3	Environmental	Open in IMG/M
3300031938	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.C.R1	Environmental	Open in IMG/M
3300031939	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R2	Environmental	Open in IMG/M
3300032074	Soil microbial communities from UC Gill Tract Community Farm, Albany, California, United States - DLSLS.P.R1	Environmental	Open in IMG/M
3300033412	Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - NC	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI24743J22301_100624991	3300001991	Corn, Switchgrass And Miscanthus Rhizosphere	MRSLTTTLMAVPAQRRLIATCMTATAFLFTSASXGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
JGI24034J26672_101144781	3300002239	Corn, Switchgrass And Miscanthus Rhizosphere	MRSLTTTLMAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVXGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
soilH1_102207373	3300003321	Sugarcane Root And Bulk Soil	MSAATFLLMSASYGQAGPAGAADGSDPASTAQTVPVDPQGLTCDDLKAQLKSAGAMSILSGPRGGWGDTFYGPAVPRCQFWQIPQFTYVRTRDRLCGVGYICIDKPSMD*
soilH2_102458643	3300003324	Sugarcane Root And Bulk Soil	MPSLATTFLTAQAGRGFLATAVVAAAFLFTSASYGQTGQPSPGGGPVPVGLQSAAPVNPESLSCNDLKAQLKSAAELNIASGPGARWGDTFYGPAVPRCPFWQMPQFTYVKARDGLCGVGYICV
Ga0062593_1020199772	3300004114	Soil	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVR
Ga0062595_1006387013	3300004479	Soil	MGAAAFLFISASDGQSGQAADGAGNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQFTYVRARDGRCGVGYICVDKYSVD*
Ga0058862_100373253	3300004803	Host-Associated	SPAPRRRVVTCIGAVAFLLSTATYGQAAQAPAMGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD*
Ga0070658_105072451	3300005327	Corn Rhizosphere	VAAATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD*
Ga0070676_100411565	3300005328	Miscanthus Rhizosphere	MTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0070690_1006780341	3300005330	Switchgrass Rhizosphere	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0068869_1009213641	3300005334	Miscanthus Rhizosphere	SASYGQAGQAPAADGSVLENGQKTAAPVKPESLTCNDLKGQLKTAGELNILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGSICIEKYSVD*
Ga0070680_1000318624	3300005336	Corn Rhizosphere	MSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD*
Ga0068868_1004427013	3300005338	Miscanthus Rhizosphere	MGAAAFLFISASYGQSGQAADGPGNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQFTYVRARDGRCGVGYICVDKYSVD*
Ga0070660_1000243463	3300005339	Corn Rhizosphere	MSSPNATMSPFAAIARPMRVATCIAAGTFLLTCASHAQVGQAPPAGSPVPGNGQQNPAPVNPGSASCGALKDQLKVTGQLNILSGPKGGWGDTFYGPAVPRCEFWQMPMFTYVRAADGLCGLGYICIDKLSFD*
Ga0070660_1013008121	3300005339	Corn Rhizosphere	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGSICIEKYSVD*
Ga0070691_105796961	3300005341	Corn, Switchgrass And Miscanthus Rhizosphere	MSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGL
Ga0070661_1001155774	3300005344	Corn Rhizosphere	WVTRPAQRCVQIRERSDTVYAMSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD*
Ga0070692_112954961	3300005345	Corn, Switchgrass And Miscanthus Rhizosphere	TTTLMAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0070668_1011640812	3300005347	Switchgrass Rhizosphere	MAAPAQRRLIAICMTATAFLFTSASYGQAGQAPAPDGPVPGNRQKAPAPVMPESLSCADLKGQLKTAGELNILSGPRGRWGDTFYGPAVPRCQFWQMPQFTYVRARDG
Ga0070669_1018736751	3300005353	Switchgrass Rhizosphere	MAAPAQRRLIAICMTATAFLFTSASYGQAGQAPAPDGPVPGNRQKAPAPVMPESLSCADLKGQLKTAGELNILSGPRGRWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGV
Ga0070688_1004817571	3300005365	Switchgrass Rhizosphere	LTTTLMAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGSICIEKYSVD*
Ga0070659_1017854151	3300005366	Corn Rhizosphere	LMAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGSICIEKYSVD*
Ga0070709_105094171	3300005434	Corn, Switchgrass And Miscanthus Rhizosphere	AAALVLTSGSYGQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD*
Ga0070714_1000118383	3300005435	Agricultural Soil	MMTMTTSGKRIRHCLAAAALVLTSGSYGQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD*
Ga0070714_1002066854	3300005435	Agricultural Soil	ARQRSLWVTRPAQRCVQIRERSDTVYAMSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPERREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD*
Ga0070714_1017135561	3300005435	Agricultural Soil	MPLITTSFATRTQRRFLATCIAAAALLLTAASYGQTGQAPAAGGPAPGNGQQTPAPVNPESRSCNDLKAELKTAGELSILSGPGGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICIDKLSFD*
Ga0070713_1004191701	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	MKRTSSPTTARSRFIATCVGAAAFLLMSASYGQSQQPPVARGPAPAAGQQAPAPVDPQSLSCDDLKAQLKNAGTMSILSGPKGGWGDTFYGPAVPQCPFWQMPQFAYVRARNGLCGVGYICVDKYSID*
Ga0070713_1009984942	3300005436	Corn, Switchgrass And Miscanthus Rhizosphere	TTSGKRIRHCLAAAALVLTSGSYGQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD
Ga0070679_1003208893	3300005530	Corn Rhizosphere	MTALFAGPAQRRFLTTCIAGATFLFAPASFGQAGQAPAAANDTSGTGQQNPAPVNPESLSCNALKAQLKTAGELNILSGPKAGWGDTFYGPAVPRCQFWQMPVFTYVRAADGLCGAGYICVDKLSVD*
Ga0070684_1023386692	3300005535	Corn Rhizosphere	MRSPATPWFAAPAHRRLLAACTSAVAFVLTPAGHGQVGEPPAVTGPVPGYAAQTPAPVDPESLSCNELKAELKRAGQLNLLYGPRGGWGDTFYGPAAPRCQFWQMPQFTYVRARDGLCGIGYICVDKLSFD*
Ga0070672_1007135131	3300005543	Miscanthus Rhizosphere	MTATAFLFTSASYGQAGQAPAPDGPVPGNRQKAPAPVMPESLSCADLKGQLKTAGELNILSGPRGRWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVG
Ga0070693_1000430241	3300005547	Corn, Switchgrass And Miscanthus Rhizosphere	AFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0068855_1005141351	3300005563	Corn Rhizosphere	AVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0070664_1000663032	3300005564	Corn Rhizosphere	MSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPERREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD*
Ga0070664_1004451421	3300005564	Corn Rhizosphere	ATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0068857_1009124641	3300005577	Corn Rhizosphere	MGAAAFLFISASDGQSGQAADGAGNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQFTYVRARDGRCGVGYICVDKYS
Ga0068854_1000181806	3300005578	Corn Rhizosphere	LSTATYGQAAQAPAMGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD*
Ga0068854_1003859212	3300005578	Corn Rhizosphere	MTATAFLFTSATYGQAGQAPAPDRSVTGNGQQAPAPVMPESLSCSDLKGQLKTAGELNILSGPRGGWGDTFYGPAVPRCQFWQMPQFAYVRARDGLCGVGYICVEKYSVD*
Ga0068854_1005887801	3300005578	Corn Rhizosphere	AATVVLTSATYSQTGQAPAAGTTGPERREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD*
Ga0068854_1019511532	3300005578	Corn Rhizosphere	HHETDNRVPMMTMTTSGKRIRHCLTAAALVLTSGSYGQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD*
Ga0068856_1001686991	3300005614	Corn Rhizosphere	APRRRVVTCIGAVAFLLSTATYGQAAQAPAMGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD*
Ga0068856_1008106282	3300005614	Corn Rhizosphere	MAVPALRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0068861_1013485921	3300005719	Switchgrass Rhizosphere	CASRMRTLMTTFFATPARPKFLATCMGAAAFLFISASYGQSGQAADGPGNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICIEKYSLD*
Ga0068851_100328081	3300005834	Corn Rhizosphere	LLSTATYGQAAQAPAMGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD*
Ga0068863_1001206605	3300005841	Switchgrass Rhizosphere	MTATAFLFTSASYGQAGQAPAPDGPVPGNRQKAPAPVMPESLSCADLKGQLKTAGELNILSGPRGRWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGV
Ga0066651_105183021	3300006031	Soil	APAQRRLIATCMTVAAFLFTSVGYGQVGQAPSVGGSIAGNAQKVPTPVMPESLSCSDLKDRLKTAGELNILSGPNGGWGDTFYGPAVPRCQFWQQPEFTYVRARDGRCGVGYICVEKYTVD*
Ga0070716_1009227102	3300006173	Corn, Switchgrass And Miscanthus Rhizosphere	MKTTSSPTAAQSRFIATCVGAAAFLLMSASYGQSQQPPVARGPAPAAGQQAPAPVDPQSLSCDDLKAQLKNAGTMSILSGPKGGWGDTFYGPAVPQCPFWQMPQFAYVRARNGLCGVGYICVDKYSID*
Ga0070712_1006116523	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	MQPLSTKSSASPAPRRRVVTCIGAVAFLLSTATYGQAARAPTTGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD*
Ga0097621_1009658031	3300006237	Miscanthus Rhizosphere	MTATAFLFTSATYGQAGQAPAPDRSVTGNGQQAPAPVMPESLSCSELKGRLKSAGELNILSGPRGGWGDTFYGPAVPRCQFWQMPQFAYVRANDGLCGVGYICVEKYSVD*
Ga0068871_1000627214	3300006358	Miscanthus Rhizosphere	MPAPATSRLVATCMTATAFLFTSATYGQAGQAPAPDRSVTGNGQQAPAPVMPESLSCSELKGRLKSAGELNILSGPRGGWGDTFYGPAVPRCQFWQMPQFAYVRANDGLCGVGYICVEKYSVD*
Ga0079222_118628191	3300006755	Agricultural Soil	LFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPERREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD*
Ga0079221_100291102	3300006804	Agricultural Soil	MVDEALGMKTILFPPRRLRTTGLAAIAFLMASASDGQTGQPPPAGAAVPAAGQQYPEPVRPENLTCNELKAQLKDAGQLSIYSGPRGGWGDTFYGPAVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD*
Ga0079221_103418791	3300006804	Agricultural Soil	SYGQARQAAVADGPVPGNVPQTLAPVNPQSLSCDDLKTQLKNAGAMSILSGPRGGWGDTFYGPAVPRCEFWQMPQFTYVRARDGLCGVGYICIEKYSLD*
Ga0079219_116608831	3300006954	Agricultural Soil	RARRRSCLRPIDVDSIHATTSLGRSHMQPLSTKSSASPAPRRRVVTCIGAVALLLSTATYGQAAQAPAMGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD*
Ga0105241_122213511	3300009174	Corn Rhizosphere	YGQAGQVPAADGPVPGNGQKAPAPVMPESLACTELKGQLKTAGELSILSGPTGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0105241_123158392	3300009174	Corn Rhizosphere	MSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMP
Ga0105238_115469862	3300009551	Corn Rhizosphere	MMTMTTSGKRIRHCLTAAALVLTSGSYGQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD*
Ga0105238_115609683	3300009551	Corn Rhizosphere	MGAAAFLFISASYGQSGQAADGPGNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQF
Ga0105239_111534352	3300010375	Corn Rhizosphere	GQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD*
Ga0105239_117274782	3300010375	Corn Rhizosphere	MGAAAFLFISASDGQSGQAADGPGNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQFTYVRARDGRCGVGYICVDKYSVD*
Ga0134122_108577131	3300010400	Terrestrial Soil	GAFLCTSASYGQLGQAPAADGRVPENVRQSSAPVNPGSLSCNELKGQLKAAGELNILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0134123_118945401	3300010403	Terrestrial Soil	APDLLSEITWPQRMRSLTTTLMAAPAQRRLIAICMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0105246_110181512	3300011119	Miscanthus Rhizosphere	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQ
Ga0150985_1091613411	3300012212	Avena Fatua Rhizosphere	PRFAAPAQRRFLPTCMAAAAFMFTSVTYGQAGQGQAAGSAAPGDGQQTPAPVNPQSLSCNDLKAQLKAAGELSILSGPRGGWGDSFYGPAVPRCGFWQTPQFTYVRTSDGLCGVGYICVDKYSID*
Ga0150985_1125204921	3300012212	Avena Fatua Rhizosphere	MSVTKTLFAARAQRTFLANCIAAAAFLLTSASYAQIAQAPGAGDSVSGNGPQTPAPVNPESMSCNDLKAELKTAGELSLLSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRTRDGLCGVGYICIDKLSFD*
Ga0150985_1182582342	3300012212	Avena Fatua Rhizosphere	VKTILLSTPFQPRLLATCLGAAAFMLMSASFGQGRQTAVADRPAPANGQQTVAPVNPQSVSCDDLKSQMQSAGAMSILSGPRGGWGDTFYGPAVPRCPFWQTPQFTYVRARDGLCGIGYICVDKYSID*
Ga0150985_1191913132	3300012212	Avena Fatua Rhizosphere	MTVAAFLFTSVANGQVGQAPSVDGSIAGNVQKGPAPVMPESLSCSDLKDRLKTAGELNILSGPNGGWGDTFYGPAVPRCQFWQQPEFTYVRARDGRCGVGYICVEKYTVD*
Ga0150985_1201090943	3300012212	Avena Fatua Rhizosphere	MNTTLMAAPAQRRLIATCMAAVAFLFASPGYGQAGKAPAVDGPVPGNGQHARAPVMPESLSCSDLKSQLKTAGELNILSGPRGGWGDTFYGPAVPRCQFWQQPQFTYVRARDGRCGVGYICVEKYSVD*
Ga0150984_1060780301	3300012469	Avena Fatua Rhizosphere	LTFETSVRAHDLTGRVTRPTRMRPLTTPPFAAPAQRRFLPACMAAAAFLFTSATYGQAGQGPAAGGPAPGDGQQTPAPVNPQSLSCNDLKAQLKAAGELSILSGPRGGWGDSFYGPAVPRCGFWQTPQFTYVRTSDGLCGVGYICVDKYSID*
Ga0150984_1071993081	3300012469	Avena Fatua Rhizosphere	MAAAAFLLTSASYAQIAQAPGAGGSVPGNGPQTPAPVNPESMSCNDLKAELKTAGELSLLSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRTRDGLCGVGYICIDKLSFD*
Ga0150984_1208815811	3300012469	Avena Fatua Rhizosphere	MTTKSTAAPARRRLIATCMTVAAFLFTSVGNGQVGQAPSVDGSIAGDVQKGPAPVMPESLSCSDLKDRLKTAGELNILSGPNGGWGDTFYGPAVPRCQFWQQPEFTYVRARDGRCGVGYICVEKYTVD*
Ga0164300_101059231	3300012951	Soil	TCMTATAFLFTSASYGQPGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0164299_100817902	3300012958	Soil	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGVLSILSGPRGGWGDTFYAPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0164301_104969982	3300012960	Soil	RRVVTCIGAVAFLLSTATYGQAAQAPAMGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0164301_110386642	3300012960	Soil	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQF
Ga0164309_103288941	3300012984	Soil	VPAQRRLIEPSLTAPASLFTSASYGRAGQVPAADGPVPETGQKALAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD*
Ga0164305_121738051	3300012989	Soil	HRRSCLRPIDVDSIHATTSLGRSHMQPLSTKSSASPAPRRRVVTCIGAVAFLLSTATYGQAAQAPATGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELSILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD*
Ga0157373_101613374	3300013100	Corn Rhizosphere	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPVFTYVRAADGLCGAGYICVDKLSVD*
Ga0157371_113502682	3300013102	Corn Rhizosphere	PAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD
Ga0157370_108500872	3300013104	Corn Rhizosphere	LLAACTSAVAFVLTPAGHGQVGEPPAVTGPVPGYAAQTPAPVDPESLSCNELKAELKRAGQLNLLYGPRGGWGDTFYGPAAPRCQFWQMPQFTYVRARDGLCGIGYICVDKLSFD*
Ga0157369_106205732	3300013105	Corn Rhizosphere	MGAAAFLFISASDGQSGQAADGAPNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQFTYVRARDGRCGVGYICVDKYSVD*
Ga0157372_100853155	3300013307	Corn Rhizosphere	MTALFAGPAQRRFLTTCIAGATFLFAPASFGQAGQATAAGNDTSGTGQQNPAPVNPESLSCNALKAQLKTAGELNILSGPKAGWGDTFYGPAVPRCQFWQMPVFTYVRAADGLCGAGYICVDKLSVD*
Ga0182008_104565321	3300014497	Rhizosphere	TSVSYGQGGQPAATQSIPPNGQVNASVDPASESCTALKARLNAAGEMSILSGPRGAWGDTFYGPAVPRCQFWQMPVFTYVHARDGLCGVGYICVEKLTFD*
Ga0157377_111892172	3300014745	Miscanthus Rhizosphere	MGAATFLFISASCGQSGQAADGPGNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQFTYVRARDGRCGVGYICVDKYSVD*
Ga0187825_102787901	3300017930	Freshwater Sediment	PGRCMRSLTTASFSTPAPRALLATCLAPAALLVAPASRGQVSQPPAGASGNARASEPVNPESLSCSDLKAQLKNAGQLSILSGPRGGFGDTFYGPAVPRCQFWQMPQFTYVRTRDGLCGVGYICVEKYSVD
Ga0173481_103362691	3300019356	Soil	MTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDG
Ga0206349_16187911	3300020075	Corn, Switchgrass And Miscanthus Rhizosphere	TFLLTCASHAQVGQAPPAGSPVPGNGQQNPAPVNPGSASCGALKDQLKVTGQLNILSGPKGGWGDTFYGPAVPRCEFWQMPMFTYVRAADGLCGLGYICIDKLSFD
Ga0206351_108913931	3300020077	Corn, Switchgrass And Miscanthus Rhizosphere	PMRVATCIAAGTFLLTCASHAQVGQAPPAGSPVPGNGQQNPAPVNPGSASCGALKDQLKVTGQLNILSGPKGGWGDTFYGPAVPRCEFWQMPMFTYVRAADGLCGLGYICIDKLSFD
Ga0126371_105957522	3300021560	Tropical Forest Soil	MQPLTSTSCALPAKRSLLATCMAATALLLASASYGQVGQPPAAGNPAAGNGQQRPEPVNPADLSCNDLKAQLKSAGQMSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRTRDGLCGIGYICIDKLSFD
Ga0224712_101173981	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	MRVATCIAAGIFLLTCASHAQVGQAPPAGSPVPGNGQQNPAPVNPGSASCGALKDQLKVTGQLNILSGPKGGWGDTFYGPAVPRCEFWQMPMFTYVRAADGLCGLGYICIDKLSFD
Ga0224712_106800852	3300022467	Corn, Switchgrass And Miscanthus Rhizosphere	LSTKSSASSAPRRRVVTCIGAVAFLLSTATYGQAAQAPAMGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD
Ga0207666_10377061	3300025271	Corn, Switchgrass And Miscanthus Rhizosphere	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD
Ga0207699_104494271	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	LAAAALVLTSGSYGQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD
Ga0207699_106766181	3300025906	Corn, Switchgrass And Miscanthus Rhizosphere	TLAGRQCVPPLFTTLFAARRLCATCVAAATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYSPAVPRCQFWQMPQFTYVRARDGLCGVGYICIDKLSFD
Ga0207705_110077712	3300025909	Corn Rhizosphere	MTALFAGPAQRRFLTTCIAGATFLFAPASFGQAGQATAAGNDTSGTGQQNPAPVNPESLSCNALKAQLKTAGELNILSGPKAGWGDTFYGPAVPRCQFWQMPVFTYVRAADGLCGAGYICVDKLSVD
Ga0207707_100053356	3300025912	Corn Rhizosphere	MSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD
Ga0207693_110064042	3300025915	Corn, Switchgrass And Miscanthus Rhizosphere	PLSTKSSASPAPRRRVVTCIGAVAFLLSTATYGQAAQAPAMGTPVPANEQQIPAPVNPESLSCNDLKAQLKTTGELNILSGPRGGWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD
Ga0207663_103851072	3300025916	Corn, Switchgrass And Miscanthus Rhizosphere	MMTMTTSGKRIRHCLTAAALVLTSGSYGQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDG
Ga0207652_102768492	3300025921	Corn Rhizosphere	MTALFAGPAQRRFLTTCIAGATFLFAPASFGQAGQAPAAANDTSGTGQQNPAPVNPESLSCNALKAQLKTAGELNILSGPKAGWGDTFYGPAVPRCQFWQMPVFTYVRAADGLCGAGYICVDKLSVD
Ga0207664_100950933	3300025929	Agricultural Soil	MSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPERREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD
Ga0207664_120102861	3300025929	Agricultural Soil	MPLITTSFATRTQRRFLATCIAAAALLLTAASYGQTGQAPAAGGPAPGNGQQTPAPVNPESRSCNDLKAELKTAGELSILSGPGGGWGDTFYGP
Ga0207706_100794663	3300025933	Corn Rhizosphere	MTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD
Ga0207711_108665841	3300025941	Switchgrass Rhizosphere	ATCMTATAFLFTSATYGQAGQAPAPDRSVTGNGQQAPAPVMPESLSCSELKGRLKSAGELNILSGPRGGWGDTFYGPAVPRCQFWQMPQFAYVRANDGLCGVGYICVEKYSVD
Ga0207667_102526462	3300025949	Corn Rhizosphere	MRVATCIAAGTFLLTCASHAQVGQAPPAGSPVPGNGQQNPAPVNPGSASCGALKDQLKVTGQLNILSGPKGGWGDTFYGPAVPRCEFWQMPMFTYVRAADGLCGLSYICIDKLSF
Ga0207667_118154081	3300025949	Corn Rhizosphere	GQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVEKYSVD
Ga0207667_120989351	3300025949	Corn Rhizosphere	MSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVG
Ga0207640_105785613	3300025981	Corn Rhizosphere	AATVVLTSATYSQTGQAPAAGTTGPESREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD
Ga0207640_110357571	3300025981	Corn Rhizosphere	MAVPAQRRLIATCMTATAFLFTSASYGQAGQVPAADGPVPGNGQKAPAPVMPESLSCTELKGQLKTAGELSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVRARDGLCGVGYICIEKYSVD
Ga0207640_115324962	3300025981	Corn Rhizosphere	SVVAICSTHHETDNRVPMMTMTTSGKRIRHCLAAAALVLTSGSYGQAAQAPAADSPAPAYREQTPAPVRPEGLTCNELKSQLKAAGQMSILSGPKGAWGDTFYGPEVPRCQFYQMPQFTYVRTRDGLCGVGYICIDKLSFD
Ga0207639_116882711	3300026041	Corn Rhizosphere	MTTFFATPARPKFLATCMGAAAFLFISASYGQSGQAADGPGNRPPSLAPVNPQSLSCDDLKAQLKSAGAMSILSGPRGSWGDTFYGPAVPRCQFWQMPQFTYV
Ga0207702_100156691	3300026078	Corn Rhizosphere	DTVYAMSTLAGRQCVPPLFTTLFAARRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPERREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD
Ga0207698_103342612	3300026142	Corn Rhizosphere	MRVATCIAAGTFLLTCASHAQVGQAPPAGSPVPGNGQQNPAPVNPGSASCGALKDQLKVTGQLNILSGPKGGWGDTFYGPAVPRCEFWQMPMFTYVRAADGLCGLGYICIDKLSFD
Ga0310813_110694802	3300031716	Soil	TVYAMSTLAGRQCVPPLFTTLFAGRRLGATCVAAATVVLTSATYSQTGQAPAAGTTGPERREQTPAPLRPEDLSCNDLKAQLKAAGQLSILSGPRGGWGDTFYGPAVPRCQFWQMPQFTYVKARDGLCGVGYICIDKLSFD
Ga0308175_1013212471	3300031938	Soil	ASPAPRRRVVTCIGAVAFLLSTATYGQAAQAPTMGAPVPANEQQIPAPVNPESLSCNDLKAELKTTGELSILSGPRGAWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD
Ga0308174_100395502	3300031939	Soil	MPVTATSFAARARRPFLATCIATVAFLLASASDAQTGQAPGAGASVPGNGQQIPAPVNPESLSCNDLKAELKTTGELSLLSGPRGGWGDTFHGPAVPRCQFWQMPQFTYVRARDGLCGVGYICVDKLSFD
Ga0308174_111557861	3300031939	Soil	LSTATYGQAAQAPTMGTPVPANEQQIPAPVNPESLSCNDLKAELKTTGELSILSGPRGAWGDTFYGPAVPRCQFWQTPQFTYVRTRDGLCGIGYICVDKYSVD
Ga0308173_100444822	3300032074	Soil	MKTISSPRTARSRFIAACVGAAAFCLMSGSHAQSQQPPIIQSPVPATGQQPVAPVDPQGLSCDDLKAQLKSAGTMSILSGPKGGWGDTFYGPAVPRCQFWQMPQFAYVRARNGLCGVGYICVDKLSID
Ga0310810_106269092	3300033412	Soil	TPAGHGQVGEPPAVTGPVPGYAAQTPAPVDPESLSCNELKAELKRAGQLNLLYGPRGGWGDTFYGPAAPRCQFWQMPQFTYVRARDGLCGIGYICVDKLSFD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076411

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences