NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F076724

Metagenome / Metatranscriptome Family F076724

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Overview Alignments Structure & Topology Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F076724
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 63 residues
Representative Sequence MDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA
Number of Associated Samples 72
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Unclassified
% of genes with valid RBS motifs 79.82 %
% of genes near scaffold ends (potentially truncated) 26.50 %
% of genes from short scaffolds (< 2000 bps) 97.44 %
Associated GOLD sequencing projects 72
AlphaFold2 3D model prediction Yes
3D model pTM-score0.32

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Unclassified (95.726 % of family members)
NCBI Taxonomy ID N/A
Taxonomy N/A

Most Common Ecosystem
GOLD Ecosystem Host-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere
(75.214 % of family members)
Environment Ontology (ENVO) Unclassified
(90.598 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant surface
(88.889 % of family members)


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Multiple Sequence Alignments

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 51.65%    β-sheet: 0.00%    Coil/Unstructured: 48.35%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.32
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
UnclassifiedrootN/A95.73 %
All OrganismsrootAll Organisms4.27 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300005335|Ga0070666_10776929Not Available705Open in IMG/M
3300005841|Ga0068863_101340614Not Available723Open in IMG/M
3300009976|Ga0105128_114827Not Available575Open in IMG/M
3300009980|Ga0105135_103778Not Available929Open in IMG/M
3300009981|Ga0105133_132512Not Available500Open in IMG/M
3300009989|Ga0105131_108143Not Available857Open in IMG/M
3300009990|Ga0105132_108948Not Available814Open in IMG/M
3300009994|Ga0105126_1006359All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Setariidae → Setaria1026Open in IMG/M
3300009995|Ga0105139_1047719Not Available746Open in IMG/M
3300009995|Ga0105139_1057163Not Available699Open in IMG/M
3300009995|Ga0105139_1109924Not Available533Open in IMG/M
3300014325|Ga0163163_11830785Not Available667Open in IMG/M
3300014968|Ga0157379_10364292Not Available1325Open in IMG/M
3300014968|Ga0157379_12286812Not Available538Open in IMG/M
3300015270|Ga0182183_1024733Not Available761Open in IMG/M
3300015280|Ga0182100_1062056Not Available595Open in IMG/M
3300015290|Ga0182105_1021390Not Available856Open in IMG/M
3300015293|Ga0182103_1040379Not Available682Open in IMG/M
3300015293|Ga0182103_1069840Not Available576Open in IMG/M
3300015297|Ga0182104_1029673Not Available809Open in IMG/M
3300015297|Ga0182104_1084817Not Available572Open in IMG/M
3300015301|Ga0182184_1035054Not Available718Open in IMG/M
3300015301|Ga0182184_1062199Not Available595Open in IMG/M
3300015306|Ga0182180_1038143Not Available696Open in IMG/M
3300015306|Ga0182180_1079239Not Available537Open in IMG/M
3300015309|Ga0182098_1026484Not Available850Open in IMG/M
3300015310|Ga0182162_1018560Not Available971Open in IMG/M
3300015310|Ga0182162_1041059Not Available758Open in IMG/M
3300015311|Ga0182182_1007819All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Setariidae → Setaria1216Open in IMG/M
3300015312|Ga0182168_1008516Not Available1260Open in IMG/M
3300015312|Ga0182168_1045047Not Available760Open in IMG/M
3300015312|Ga0182168_1067539Not Available659Open in IMG/M
3300015312|Ga0182168_1136691Not Available502Open in IMG/M
3300015313|Ga0182164_1026298Not Available905Open in IMG/M
3300015313|Ga0182164_1111293Not Available547Open in IMG/M
3300015315|Ga0182120_1022189Not Available963Open in IMG/M
3300015315|Ga0182120_1026753Not Available907Open in IMG/M
3300015315|Ga0182120_1048764Not Available745Open in IMG/M
3300015316|Ga0182121_1054492Not Available741Open in IMG/M
3300015316|Ga0182121_1061118Not Available711Open in IMG/M
3300015316|Ga0182121_1080958Not Available640Open in IMG/M
3300015316|Ga0182121_1130684Not Available527Open in IMG/M
3300015317|Ga0182136_1107779Not Available560Open in IMG/M
3300015317|Ga0182136_1126086Not Available526Open in IMG/M
3300015318|Ga0182181_1043764Not Available702Open in IMG/M
3300015318|Ga0182181_1090596Not Available549Open in IMG/M
3300015319|Ga0182130_1067022Not Available654Open in IMG/M
3300015319|Ga0182130_1085711Not Available600Open in IMG/M
3300015324|Ga0182134_1089659Not Available612Open in IMG/M
3300015324|Ga0182134_1097112Not Available594Open in IMG/M
3300015325|Ga0182148_1013127All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Setariidae → Setaria1120Open in IMG/M
3300015325|Ga0182148_1093450Not Available598Open in IMG/M
3300015326|Ga0182166_1023362Not Available942Open in IMG/M
3300015326|Ga0182166_1047734Not Available754Open in IMG/M
3300015326|Ga0182166_1054591Not Available720Open in IMG/M
3300015327|Ga0182114_1054781Not Available771Open in IMG/M
3300015328|Ga0182153_1064518Not Available698Open in IMG/M
3300015329|Ga0182135_1005279All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Setariidae → Setaria1500Open in IMG/M
3300015329|Ga0182135_1054555Not Available748Open in IMG/M
3300015331|Ga0182131_1071695Not Available683Open in IMG/M
3300015333|Ga0182147_1006784Not Available1480Open in IMG/M
3300015334|Ga0182132_1093412Not Available644Open in IMG/M
3300015335|Ga0182116_1125867Not Available588Open in IMG/M
3300015336|Ga0182150_1072258Not Available698Open in IMG/M
3300015336|Ga0182150_1087085Not Available651Open in IMG/M
3300015337|Ga0182151_1056782Not Available761Open in IMG/M
3300015337|Ga0182151_1163023Not Available507Open in IMG/M
3300015338|Ga0182137_1084735Not Available691Open in IMG/M
3300015340|Ga0182133_1190966Not Available503Open in IMG/M
3300015348|Ga0182115_1086328Not Available973Open in IMG/M
3300015348|Ga0182115_1177118Not Available683Open in IMG/M
3300015348|Ga0182115_1235431Not Available584Open in IMG/M
3300015349|Ga0182185_1088851Not Available875Open in IMG/M
3300015349|Ga0182185_1262563Not Available527Open in IMG/M
3300015350|Ga0182163_1123227Not Available797Open in IMG/M
3300015350|Ga0182163_1289834Not Available512Open in IMG/M
3300015352|Ga0182169_1182008Not Available687Open in IMG/M
3300015352|Ga0182169_1235903Not Available596Open in IMG/M
3300015352|Ga0182169_1272807Not Available548Open in IMG/M
3300015353|Ga0182179_1048227Not Available1153Open in IMG/M
3300015353|Ga0182179_1072479Not Available987Open in IMG/M
3300015353|Ga0182179_1180420Not Available667Open in IMG/M
3300015353|Ga0182179_1236567Not Available587Open in IMG/M
3300015353|Ga0182179_1297356Not Available525Open in IMG/M
3300015354|Ga0182167_1342559Not Available524Open in IMG/M
3300017408|Ga0182197_1038182Not Available847Open in IMG/M
3300017414|Ga0182195_1026086Not Available1098Open in IMG/M
3300017414|Ga0182195_1068995Not Available792Open in IMG/M
3300017414|Ga0182195_1147683Not Available594Open in IMG/M
3300017421|Ga0182213_1230144Not Available530Open in IMG/M
3300017422|Ga0182201_1010794Not Available1162Open in IMG/M
3300017432|Ga0182196_1129153Not Available538Open in IMG/M
3300017439|Ga0182200_1052488Not Available746Open in IMG/M
3300017439|Ga0182200_1056587Not Available728Open in IMG/M
3300017445|Ga0182198_1120487Not Available617Open in IMG/M
3300017691|Ga0182212_1068269Not Available787Open in IMG/M
3300020033|Ga0182146_100546Not Available1089Open in IMG/M
3300025931|Ga0207644_11481299Not Available570Open in IMG/M
3300025972|Ga0207668_10124809All Organisms → cellular organisms → Eukaryota → Opisthokonta → Metazoa → Eumetazoa → Bilateria → Protostomia → Ecdysozoa → Nematoda → Chromadorea → Rhabditida → Spirurina → Spiruromorpha → Filarioidea → Setariidae → Setaria1956Open in IMG/M
3300025986|Ga0207658_10988455Not Available768Open in IMG/M
3300026095|Ga0207676_12324361Not Available534Open in IMG/M
3300028064|Ga0268340_1076779Not Available526Open in IMG/M
3300028141|Ga0268326_1003203Not Available771Open in IMG/M
3300028142|Ga0268347_1022874Not Available575Open in IMG/M
3300028152|Ga0268336_1024821Not Available541Open in IMG/M
3300028153|Ga0268320_1026317Not Available526Open in IMG/M
3300028154|Ga0268341_1015860Not Available626Open in IMG/M
3300028381|Ga0268264_10999612Not Available843Open in IMG/M
3300028381|Ga0268264_11396989Not Available711Open in IMG/M
3300028475|Ga0268327_1017031Not Available583Open in IMG/M
3300028477|Ga0268309_1003008Not Available873Open in IMG/M
3300028526|Ga0268339_1016615Not Available541Open in IMG/M
3300032625|Ga0214501_1160089Not Available718Open in IMG/M
3300032625|Ga0214501_1176822Not Available680Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
Switchgrass PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Switchgrass Phyllosphere75.21%
PhyllosphereHost-Associated → Plants → Phyllosphere → Unclassified → Unclassified → Phyllosphere7.69%
Switchgrass AssociatedHost-Associated → Plants → Unclassified → Unclassified → Unclassified → Switchgrass Associated7.69%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere3.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere3.42%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere1.71%
Switchgrass RhizosphereHost-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere0.85%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300005335Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaGHost-AssociatedOpen in IMG/M
3300005841Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2Host-AssociatedOpen in IMG/M
3300009976Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_186 metaGHost-AssociatedOpen in IMG/M
3300009980Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_219 metaGHost-AssociatedOpen in IMG/M
3300009981Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_208 metaGHost-AssociatedOpen in IMG/M
3300009989Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_197 metaGHost-AssociatedOpen in IMG/M
3300009990Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_206 metaGHost-AssociatedOpen in IMG/M
3300009994Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_171 metaGHost-AssociatedOpen in IMG/M
3300009995Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - LS_227 metaGHost-AssociatedOpen in IMG/M
3300014325Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaGHost-AssociatedOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015270Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015280Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015290Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015293Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015297Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015301Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015306Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015309Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_09MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015310Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015311Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015312Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015313Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015315Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015316Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015317Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015318Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015319Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015324Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015325Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015326Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015327Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015328Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015329Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015331Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015333Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015334Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015335Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015336Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015337Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_12JUL2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015338Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015340Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_20JUN2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015348Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_31MAY2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015349Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015350Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015352Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015353Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_22AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300015354Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_NF_01AUG2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017408Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017414Switchgrass phyllosphere microbial communities from Michigan, USA - G5R2_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017421Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017422Switchgrass phyllosphere microbial communities from Michigan, USA - G5R4_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017432Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017439Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017445Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_NF_12SEP2016_LD1 MGHost-AssociatedOpen in IMG/M
3300017691Switchgrass phyllosphere microbial communities from Michigan, USA - G5R3_MAIN_03OCT2016_LD1 MGHost-AssociatedOpen in IMG/M
3300020033Switchgrass phyllosphere microbial communities from Michigan, USA - G5R1_MAIN_12JUL2016_LD2 MGHost-AssociatedOpen in IMG/M
3300025931Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025972Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025986Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026095Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028064Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028141Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R3_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028142Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028152Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028153Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R1_NF_26JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028154Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_28AUG2017_LD1Host-AssociatedOpen in IMG/M
3300028381Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes)Host-AssociatedOpen in IMG/M
3300028475Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_17JUL2017_LD1Host-AssociatedOpen in IMG/M
3300028477Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R2_MAIN_05JUN2017_LD1Host-AssociatedOpen in IMG/M
3300028526Phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_NF_07AUG2017_LD1Host-AssociatedOpen in IMG/M
3300032625Metatranscriptome of phyllosphere microbial comminities from switchgrass, GLBRC, Michigan, United States - G5R4_MAIN_12SEP2016_LR1 (Metagenome Metatranscriptome)Host-AssociatedOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
Ga0070666_1077692913300005335Switchgrass RhizosphereMCASECQMDWSSKASYHKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARK
Ga0068863_10134061433300005841Switchgrass RhizosphereMDWSSKAPYQKRGIPLVCELGLLEWHFAKLEADEDYSEALQACARARMGGARQQNDFLCKPKA*
Ga0105128_11482723300009976Switchgrass AssociatedMDWSSKGLDQKRSNPLVCELGLLEWHFAKLEADEDYGEALQACARARMSGARQQNDFLCKAKA*
Ga0105135_10377823300009980Switchgrass AssociatedMDWSSKAPYQKRSIPLVCELGLQEWQFAKLEVDEDYGEALQACGRARMGEARW*
Ga0105133_13251213300009981Switchgrass AssociatedMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGAMQQNDFLCKATS*
Ga0105131_10814313300009989Switchgrass AssociatedMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEVDEDYGEALQACARARMGGARQQNDFLCKAKA*
Ga0105132_10894823300009990Switchgrass AssociatedMSPFMCASECQMDWSSKSMDQKRSIPLVCELGLLEWHFAKLEADEDYSEALQACARARMGGARQQNDFLCKAKA*
Ga0105126_100635913300009994Switchgrass AssociatedMSPFMCASECQMVWSSKAPDQKRSIPQVCELGLLERCFAKLRVNEDYGEALQACTRARMGGARQQNDFLCKAKA*
Ga0105139_104771923300009995Switchgrass AssociatedMEWSSKASDQKRTIPLMCELGLLERRDAKTETDEDYGEALQVRATARLGGARQWNVFLLECNATF*
Ga0105139_105716313300009995Switchgrass AssociatedMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQ*
Ga0105139_110992413300009995Switchgrass AssociatedMDWSSKAPDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARARARMGGARQ*
Ga0163163_1183078513300014325Switchgrass RhizosphereMDWSSTAPYQKRSITLVCELGLLEWHFAKLEADEDYGEALQACARAMMGGARQQNDFLCKAKA*
Ga0157379_1036429233300014968Switchgrass RhizosphereMCASECQMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADKDYGKALQACARARMGGATQQNDFLCKAKA*
Ga0157379_1228681213300014968Switchgrass RhizosphereMDWSSKAPNQKRSIPLVCELGLLEWQFAKLEADEDYGEALQERARARMSGARQQNVFLLMCKATA*
Ga0182183_102473313300015270Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNEFLCKAKA*
Ga0182100_102674813300015280Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARTRA
Ga0182100_106205613300015280Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA*
Ga0182105_102139013300015290Switchgrass PhyllosphereMYWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA*
Ga0182103_104037923300015293Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQARERARMGGSRQQNVFLLMCKATA*
Ga0182103_106984013300015293Switchgrass PhyllosphereMKWHSSALDQRRSIPLVCELGLLERRFAKLEADEDYAKALQVRSRARIGGTRQQNVFLLW
Ga0182104_102967313300015297Switchgrass PhyllosphereMDWSSKALYQKRSIPLVCELGLKEWRFAKLEADEDYGEALQARERARMGGARRQNAFLLMCK
Ga0182104_108481723300015297Switchgrass PhyllosphereVEWSSNAVDQKRSIPLVCELGLLEWCLAKLEVYEDYGEALQARARAWLGGARGQNVFLLKCKAIA*
Ga0182184_103505413300015301Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWRFAKLEADEDYGEALQARERARMGGSRQQNVFLLMCMATA*
Ga0182184_106219913300015301Switchgrass PhyllosphereMDCSSRAPDHKRSISLVCELGLLERCFAKLEADEDYGEALQARARARMGGARRQNVFLLMCKATA*
Ga0182180_103814313300015306Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEGGARQQNDFLC
Ga0182180_107923913300015306Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFTKLEADEDYGEALQACARARMGGARQQNEFLCKAKA*
Ga0182098_102648413300015309Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGKALQACARARMGGARQQNDFLCKAKA*
Ga0182162_101856013300015310Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWCFAKLEADEDYGEALQARERARMGGARR*
Ga0182162_104105913300015310Switchgrass PhyllosphereSECQMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARHQNDFLCKAKA*
Ga0182182_100781933300015311Switchgrass PhyllosphereMDWSSKVPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA*
Ga0182168_100851613300015312Switchgrass PhyllosphereMSPFVCESGCQMEWSSKASDQKRTIPLMCELGLLERRDAKTETDEDYGEALQVRATARLGGARQWNVFLLECNATF*
Ga0182168_104504723300015312Switchgrass PhyllosphereMDWSSKTPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQ*
Ga0182168_106753923300015312Switchgrass PhyllosphereMEWSSRAPDQKRNIPLVRELGLLERCLAKLEVDEDYGEALQARASARLGGARRQNAFLLKCKAIA*
Ga0182168_113669113300015312Switchgrass PhyllosphereDQKRCIPLAFELELPERRYAKQEADEDYGEALQVRARARMGGARQQNIFLMCKARA*
Ga0182164_102629813300015313Switchgrass PhyllosphereMDWSSKAPYQKRSIPHVCELGLLEWHFAKLEVDEDYGEALQACARARMGG
Ga0182164_111129323300015313Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQASARARMSGARQ*
Ga0182120_102218913300015315Switchgrass PhyllosphereMKWHSSALDQRRSIPLVCELGLLERRFAKLEADEDYAKALQVRSRARMGGTRQQNVFLLW
Ga0182120_102675313300015315Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWQFAKLEVDEDYGEALQERARARMSGARQQNVFLLMCKATT*
Ga0182120_104876423300015315Switchgrass PhyllosphereMSPFVCASECQMEWGSKAPDQKRSIPLVCELGLLERRLAKLEVDEDYGEALQTHARARLGGARRQNAFLLKCKAIA*
Ga0182121_105449213300015316Switchgrass PhyllosphereMEWSSRAPDQKRNIPLVCELGLLERCLAKLEVDEDYGEALQTHARARLGGARRQNAFLLKCKAIA*
Ga0182121_106111813300015316Switchgrass PhyllosphereMDWSSKTPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA*
Ga0182121_108095813300015316Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARTRARMSGARQQNVFLLMCKATA*
Ga0182121_113068413300015316Switchgrass PhyllosphereMDWSSKAPNQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARTRARMDGARQQMFFLLMCKATA*
Ga0182136_110777913300015317Switchgrass PhyllosphereRSIPLVCELGLLEWQFAKLEADEDYGEALQARTRARMSGARQQNVFLLMCKATT*
Ga0182136_112608613300015317Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWQFAKLEADEDYCEALQARARARMSGARQQNVFLLM
Ga0182181_104376413300015318Switchgrass PhyllosphereICASECQMDCSSRAPDHKRSISLVCELGLLERCFAKLEADDDYGEALQVRARARMGGARR
Ga0182181_109059623300015318Switchgrass PhyllosphereMDWGSKAPEQKRSIPLVCGLGLLEWRFAKLEVDEDYGEALQACARARMGGARQQNDFLCKAKA*
Ga0182130_106702223300015319Switchgrass PhyllosphereMDWSSKTPYQKRSIPLVCELGLLEWHFTKLEADEDYGEALQACARARMGGAR
Ga0182130_108571113300015319Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEGGARLQNDFLCKAKA*
Ga0182134_108965913300015324Switchgrass PhyllosphereSISLVCELGLLERCFAKLEADEDYGEALQARARARMGGAMRQNVFLLMCKATA*
Ga0182134_109498313300015324Switchgrass PhyllosphereVCKLGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKASRQCI*
Ga0182134_109711213300015324Switchgrass PhyllosphereMDWSSKGLDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARTRARMSGARQQNVFLLMCKATD*
Ga0182148_101312713300015325Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWRFAKLEADEDYGEALQARERARMGGSRQQNVFLLMCKATA*
Ga0182148_109345013300015325Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFTKLEADEDYGEALQACARARMGGARQ*
Ga0182166_102336213300015326Switchgrass PhyllosphereMDWSSKGLDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARARARMSGARQQNVFLLMCKATA*
Ga0182166_104773423300015326Switchgrass PhyllosphereMDCSSRAPDHKRSISLVCELGLLVRCFAKLEADEDYGEALQARARARMGGARRQNVFLLMCKATA*
Ga0182166_105459113300015326Switchgrass PhyllosphereMDWSSKVPDQKRSIPLVCELGLHEWRFAKLEADEDYGEALQARTRARMGGTSQQNV
Ga0182114_105478113300015327Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKPKA*
Ga0182153_106451823300015328Switchgrass PhyllospherePYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA*
Ga0182135_100527913300015329Switchgrass PhyllosphereMDWSSKALYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA*
Ga0182135_105455513300015329Switchgrass PhyllosphereRSIPLVCELGLLEWQFAKLEADEEYGEALQERTRARMSGARQQNVFLLMCKATA*
Ga0182131_107169513300015331Switchgrass PhyllosphereMDWCCKALDQKRSIPLVCELGLLERHFAKLGANEDYGEALQARARARLGGARWRNVFLLMCKAKA*
Ga0182147_100678413300015333Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLERRFAKLEADEDYAKALQVRSRAR
Ga0182132_109341213300015334Switchgrass PhyllosphereNMSPFMCASECQMVWSSKAPDQKRSIPQVCELGLLERCFAKLRANEDYGEALQARARARLGGVRW*
Ga0182116_112586713300015335Switchgrass PhyllosphereMSPFMCASDCQMVWSSKAPDQKRSIPQVCELGLLEWCFAKLRENEDYGKALQECARARLGGARWWNVFLLMCKAKA*
Ga0182150_107225813300015336Switchgrass PhyllosphereMKWHSSALDQRRSIPLVCELGLLERRFAKLEADEDYAKALQVRSRARMGGTRQQNVFL
Ga0182150_108708513300015336Switchgrass PhyllospherePFMCASECQMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKPKA*
Ga0182151_105678213300015337Switchgrass PhyllosphereMCVSECQIDWSSKAPDQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNEFLCKAKA*
Ga0182151_116302313300015337Switchgrass PhyllosphereMCASESQMDWSSKAPDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARARARMSGARQQNVFLLMCKATT*
Ga0182137_108473513300015338Switchgrass PhyllosphereMDWSSKAPYQKRGIPLVCELGLLEWHFAKLEADEDYSEALQACARARM
Ga0182133_119096613300015340Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFL
Ga0182115_108632823300015348Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARARARMGGARR*
Ga0182115_117711813300015348Switchgrass PhyllosphereMDCSSRAPDHKRSISLVCELGLLERCFAKLEADEDYGEALQARARARLGGARRQNVFLLKCKAKACIRAAF*
Ga0182115_123543113300015348Switchgrass PhyllosphereMCVSECQIDWSSKAPDRKRSIPLVCELGLLEWRFAKLEADEDYDEALQARARVRLGGARRWNVFLL
Ga0182185_108885113300015349Switchgrass PhyllosphereVSPFVCASSCQMEWSSRAPDQKRNIPLVCELGLLERCLAKLEVDEDYGEALQARARARLGGARRQNVFLLKCKAIA*
Ga0182185_126256313300015349Switchgrass PhyllosphereMSPFVCASECQMEWGSKAPDQKRSIPIVCELGLLERRLAKLEVDEDYGEALQTHARARLGGARRPNAFLLKC
Ga0182163_112322713300015350Switchgrass PhyllosphereVACSIGTAQNTSPFMCASECQMDWCCKALDQKRSIPLVCELGLLERHFAKLGANEDYGEALQAHARARLGGARWRNVFLLMCKAKA*
Ga0182163_128983413300015350Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWRFAKLEMNEDYGEALQARARARIGGARLQNVFLPMCKATA*
Ga0182169_118200813300015352Switchgrass PhyllosphereMSPFVCASECQMEWGSKAPDQKRSIPLVCELGLLERRLAKLEVDEDYGEALQMHARARLGGARRQNAFLLKCKSIA*
Ga0182169_123590313300015352Switchgrass PhyllosphereMDWSSKASYQKRSIPLVCELGLLEWHFTKLEADEDYGEALQACARARMGGARQQN
Ga0182169_127280713300015352Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYAKALQVRSRARMGGTRQQNVFLLW
Ga0182179_104822733300015353Switchgrass PhyllosphereME*SSKALDQKTSIPLVCELGMLERCYAKLEVDEDYAKALQGRTRASMGGTRQQNVFLL
Ga0182179_107247913300015353Switchgrass PhyllosphereVEGFVKALDQKRGNPLVCELGLLEQRHAKQEADEDYAEVLQARARARMGGARQQNGF*
Ga0182179_118042013300015353Switchgrass PhyllosphereQMDWCCKALDQKRSIPLVCELGLLERHFAKLGANEDYGEALQAHARARLGGARWRNVFLLMCKAKA*
Ga0182179_123656713300015353Switchgrass PhyllosphereMDWSSKALDQKRSIPLMCELGLLEWRFAKLVADEDYGEALQARARARMGGARQQNIFRLMCKATA*
Ga0182179_129735613300015353Switchgrass PhyllosphereMEWSSRAPDQKRNIPLVCELGLLERCLAKLEVDEDYGEALQARASARLGGARRQNAFLLKCKAIAGRHADIAAF*
Ga0182167_134255923300015354Switchgrass PhyllosphereMDWSSKGLDQKRSIPLVCELGLQEWQFAKLEADEDYGEALQARGRARMGEARW*
Ga0182197_103818223300017408Switchgrass PhyllosphereMFPFMCASECQMDWSSKALYQKRSIPLVCELGLLEWRFARLEADEDYGEALQMHARARMGGVKQQNVFLPMCRAKA
Ga0182195_102608613300017414Switchgrass PhyllosphereMEWSSKASDQKRTIPLMCELGLLERRDAKTETDEDYGEALQVRATARLGGARQWNVFLLECNATF
Ga0182195_106899513300017414Switchgrass PhyllosphereMDWSSKAPDQKRSIPLVCELGLLEWRFAKLEADEDYGEALQARERARMGGSRQQNVFLLMCKATA
Ga0182195_114768333300017414Switchgrass PhyllosphereMYQKGSIPLVCELGLLEWHFAKLEADQDYGEALQACARARMGGA
Ga0182213_123014423300017421Switchgrass PhyllosphereMSPFMCASECQMVWSSKAPDQKRSIPQVCELGLLERCFAKLRVNEDYGEALQARARARMGGARQQNIFLMCKARA
Ga0182201_101079413300017422Switchgrass PhyllosphereMEWSSKASDQKRTIPLMCELGLLERRDAKTETDEDYGEALQVRAMSRLGGARRWNVFLLECNATF
Ga0182196_112915323300017432Switchgrass PhyllosphereMDLSSKAPDQKRSIPLVCELGLLEWQFAKLEADEDYGEALQARTRARMSGARQQNVFLLMCKATA
Ga0182200_105248823300017439Switchgrass PhyllosphereMSPFMCASECQMDWSSKGLDQKRSIPLVCELGLLEWCFAKLVADEDYGEALQARARARMGGARR
Ga0182200_105658713300017439Switchgrass PhyllosphereMSPFMCASECKMDWSSTTPYQKRSITLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA
Ga0182198_112048723300017445Switchgrass PhyllosphereMSPFMCASECQMDWSSKAPYQNRSIPLVCKLWLLEWHFAKLEADEDYGEALQACARAKMGGARQQNEFLCKAKA
Ga0182198_118040223300017445Switchgrass PhyllosphereLGLLEWHFAKLEADEDYSEALQACARARMGGARQQNDFLCKAKA
Ga0182212_106826923300017691Switchgrass PhyllosphereMCASECQMDWSSKGLDQKRSIPLVCELGLQEWQFAKLETDEDYGEALQARGRARMGE
Ga0182146_10054623300020033Switchgrass PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNVFSAD
Ga0207644_1148129913300025931Switchgrass RhizosphereMSPFMCASECQMDWSSKASYHKRSIPLVCELGLLEWHFTKLEADEDYGEALQACARARMGGARQQNEFLCKAKA
Ga0207668_1012480923300025972Switchgrass RhizosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA
Ga0207658_1098845523300025986Switchgrass RhizosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQ
Ga0207676_1232436113300026095Switchgrass RhizosphereMDQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNEFLCKAKA
Ga0268340_107677913300028064PhyllosphereMSPLICASECQMDWSSKTPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNVFLLMCKATT
Ga0268326_100320313300028141PhyllosphereQMDLSSKAPDQKRSIPLVCELGLLEWHFTKLEADEDYGEALQACARARMGGARQQNEFLCKAKA
Ga0268347_102287413300028142PhyllosphereKRSIPLVCELGLLEWQFAKLEADEDYGEALQARARARMGGARWQNVFLLMCKATA
Ga0268336_102482113300028152PhyllosphereMDWSSTTPYQKRSITLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKPKA
Ga0268320_102631713300028153PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFTKLEADEDYGEALQACARARMGGARQQNEFLCKAKA
Ga0268341_101586023300028154PhyllosphereMSPFMCASECQMDWSSKALYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA
Ga0268264_1099961213300028381Switchgrass RhizosphereMDWSSKAPYQKRSIPLVCELGLLEWRFAKLAMNEDYGEALQVRARARIGGARLQNVFLLMCKATA
Ga0268264_1139698923300028381Switchgrass RhizosphereMDWSSKVPDQKRSIPLVCELGLKEWHFAKLEADEDYGEALQARARARMGGARWQNVFLLMCKATA
Ga0268327_101703113300028475PhyllosphereQMDWSSKSMDQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKA
Ga0268309_100300813300028477PhyllosphereMSPFMCASECQMDWSSKAPYQKRSIPLVCELGLLEWQFAKLEADEDYGEVLQAHSRARLG
Ga0268339_101661523300028526PhyllosphereMDWSSKAPYQKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLCKAKASRQCI
Ga0214501_116008913300032625Switchgrass PhyllosphereMDWSSKAPDRKRSIPLVCELGLLEWHFAKLEADEDYGEALQACARARMGGARQQNDFLFKAKA
Ga0214501_117682213300032625Switchgrass PhyllosphereMCASECQMDWSSKALYQKRSIPLVCELGLLEWQFAKLEADEEYGEALQERTRARMSGARQQNV

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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