Metagenome / Metatranscriptome Family F076806

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F076806
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	58 residues
Representative Sequence	MKFEDAGRAIDREFEKLRKFLNDEVRPETKKETAEFLRKSADRLTKMAERLEKEKAKP
Number of Associated Samples	77
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	85.47 %
% of genes near scaffold ends (potentially truncated)	23.08 %
% of genes from short scaffolds (< 2000 bps)	74.36 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.65

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (69.231 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog (20.513 % of family members)
Environment Ontology (ENVO)	Unclassified (58.120 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Water (non-saline) (38.462 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 58.14% β-sheet: 0.00% Coil/Unstructured: 41.86%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.65
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.65
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF05036	SPOR	13.68
PF03330	DPBB_1	11.11
PF01694	Rhomboid	5.13
PF08669	GCV_T_C	4.27
PF01230	HIT	2.56
PF00266	Aminotran_5	1.71
PF01592	NifU_N	1.71
PF12732	YtxH	0.85
PF01546	Peptidase_M20	0.85
PF01883	FeS_assembly_P	0.85
PF10049	DUF2283	0.85
PF02656	DUF202	0.85
PF03484	B5	0.85
PF11969	DcpS_C	0.85
PF00999	Na_H_Exchanger	0.85
PF01433	Peptidase_M1	0.85
PF02894	GFO_IDH_MocA_C	0.85
PF03466	LysR_substrate	0.85
PF01458	SUFBD	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0705	Membrane-associated serine protease, rhomboid family	Posttranslational modification, protein turnover, chaperones [O]	5.13
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	1.71
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.85
COG0072	Phenylalanyl-tRNA synthetase beta subunit	Translation, ribosomal structure and biogenesis [J]	0.85
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.85
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.85
COG0673	Predicted dehydrogenase	General function prediction only [R]	0.85
COG0719	Fe-S cluster assembly scaffold protein SufB	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG2149	Uncharacterized membrane protein YidH, DUF202 family	Function unknown [S]	0.85
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.85
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.85
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	69.23 %
Unclassified	root	N/A	30.77 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	69.23 %
Unclassified	root	N/A	30.77 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	69.23 %
Unclassified	root	N/A	30.77 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	40.17 %
Unclassified	root	N/A	30.77 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	3.42 %

Name	Rank	Taxonomy	Distribution
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	35.90 %
Unclassified	root	N/A	30.77 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	2.56 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2.56 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	35.90 %
Unclassified	root	N/A	30.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.56 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	35.90 %
Unclassified	root	N/A	30.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.56 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	35.90 %
Unclassified	root	N/A	30.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.56 %
unclassified Acidobacteriaceae	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	35.90 %
Unclassified	root	N/A	30.77 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	2.56 %
Acidobacteriaceae bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10040686	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1277	Open in IMG/M
3300004152\|Ga0062386_101684445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300005534\|Ga0070735_10879653	Not Available	526	Open in IMG/M
3300005538\|Ga0070731_10328796	All Organisms → cellular organisms → Bacteria	1015	Open in IMG/M
3300006162\|Ga0075030_100322334	All Organisms → cellular organisms → Bacteria	1234	Open in IMG/M
3300009093\|Ga0105240_11404445	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	734	Open in IMG/M
3300009518\|Ga0116128_1055578	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	1238	Open in IMG/M
3300009640\|Ga0116126_1214566	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	614	Open in IMG/M
3300009640\|Ga0116126_1221162	Not Available	602	Open in IMG/M
3300009762\|Ga0116130_1293918	Not Available	519	Open in IMG/M
3300009824\|Ga0116219_10353817	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	823	Open in IMG/M
3300010339\|Ga0074046_10244205	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1116	Open in IMG/M
3300010341\|Ga0074045_10230237	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1232	Open in IMG/M
3300010343\|Ga0074044_10777324	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	625	Open in IMG/M
3300010379\|Ga0136449_100074963	All Organisms → cellular organisms → Bacteria	7204	Open in IMG/M
3300010379\|Ga0136449_100581578	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → unclassified Acidobacteriaceae → Acidobacteriaceae bacterium	1915	Open in IMG/M
3300010379\|Ga0136449_103147683	Not Available	639	Open in IMG/M
3300010379\|Ga0136449_103568191	Not Available	591	Open in IMG/M
3300010379\|Ga0136449_104466874	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	515	Open in IMG/M
3300014151\|Ga0181539_1000126	All Organisms → cellular organisms → Bacteria	84193	Open in IMG/M
3300014151\|Ga0181539_1185118	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	809	Open in IMG/M
3300014152\|Ga0181533_1000049	All Organisms → cellular organisms → Bacteria	133643	Open in IMG/M
3300014153\|Ga0181527_1190640	Not Available	863	Open in IMG/M
3300014155\|Ga0181524_10114840	All Organisms → cellular organisms → Bacteria	1468	Open in IMG/M
3300014159\|Ga0181530_10242951	Not Available	968	Open in IMG/M
3300014159\|Ga0181530_10586461	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300014160\|Ga0181517_10012644	All Organisms → cellular organisms → Bacteria → Acidobacteria	6367	Open in IMG/M
3300014162\|Ga0181538_10524463	Not Available	622	Open in IMG/M
3300014162\|Ga0181538_10558604	Not Available	599	Open in IMG/M
3300014164\|Ga0181532_10392001	Not Available	772	Open in IMG/M
3300014164\|Ga0181532_10809818	All Organisms → cellular organisms → Bacteria	502	Open in IMG/M
3300014167\|Ga0181528_10375279	Not Available	773	Open in IMG/M
3300014200\|Ga0181526_10222800	All Organisms → cellular organisms → Bacteria	1204	Open in IMG/M
3300014200\|Ga0181526_10571518	Not Available	715	Open in IMG/M
3300014201\|Ga0181537_11028409	Not Available	557	Open in IMG/M
3300014490\|Ga0182010_10044246	All Organisms → cellular organisms → Bacteria	2104	Open in IMG/M
3300014491\|Ga0182014_10053262	All Organisms → cellular organisms → Bacteria	2764	Open in IMG/M
3300014491\|Ga0182014_10104638	All Organisms → cellular organisms → Bacteria	1694	Open in IMG/M
3300014492\|Ga0182013_10271813	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	967	Open in IMG/M
3300014493\|Ga0182016_10025446	All Organisms → cellular organisms → Bacteria	5125	Open in IMG/M
3300014494\|Ga0182017_10445741	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	797	Open in IMG/M
3300014496\|Ga0182011_10054845	All Organisms → cellular organisms → Bacteria	2818	Open in IMG/M
3300014496\|Ga0182011_10806110	Not Available	588	Open in IMG/M
3300014498\|Ga0182019_10787882	Not Available	679	Open in IMG/M
3300014638\|Ga0181536_10053084	All Organisms → cellular organisms → Bacteria	2641	Open in IMG/M
3300014638\|Ga0181536_10054943	All Organisms → cellular organisms → Bacteria	2577	Open in IMG/M
3300014638\|Ga0181536_10346302	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	677	Open in IMG/M
3300014654\|Ga0181525_10481120	Not Available	686	Open in IMG/M
3300014838\|Ga0182030_10981404	Not Available	746	Open in IMG/M
3300014838\|Ga0182030_11021592	Not Available	725	Open in IMG/M
3300014839\|Ga0182027_10080486	All Organisms → cellular organisms → Bacteria	3973	Open in IMG/M
3300014839\|Ga0182027_10153796	All Organisms → cellular organisms → Bacteria	2707	Open in IMG/M
3300016700\|Ga0181513_1187070	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	510	Open in IMG/M
3300016701\|Ga0181509_1264476	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	558	Open in IMG/M
3300017925\|Ga0187856_1000364	All Organisms → cellular organisms → Bacteria	42310	Open in IMG/M
3300017929\|Ga0187849_1001242	All Organisms → cellular organisms → Bacteria	28796	Open in IMG/M
3300017935\|Ga0187848_10234007	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	780	Open in IMG/M
3300017943\|Ga0187819_10632877	Not Available	605	Open in IMG/M
3300017948\|Ga0187847_10513229	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	665	Open in IMG/M
3300017970\|Ga0187783_10022304	All Organisms → cellular organisms → Bacteria	4680	Open in IMG/M
3300017970\|Ga0187783_11245011	Not Available	536	Open in IMG/M
3300017988\|Ga0181520_10014330	All Organisms → cellular organisms → Bacteria → Acidobacteria	9842	Open in IMG/M
3300017988\|Ga0181520_10041577	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	4544	Open in IMG/M
3300017988\|Ga0181520_10559826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	799	Open in IMG/M
3300017988\|Ga0181520_10572879	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	788	Open in IMG/M
3300018022\|Ga0187864_10494395	Not Available	514	Open in IMG/M
3300018025\|Ga0187885_10088717	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1517	Open in IMG/M
3300018030\|Ga0187869_10148804	All Organisms → cellular organisms → Bacteria → Proteobacteria	1162	Open in IMG/M
3300018034\|Ga0187863_10320054	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	863	Open in IMG/M
3300018034\|Ga0187863_10585037	Not Available	627	Open in IMG/M
3300018038\|Ga0187855_10459284	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	742	Open in IMG/M
3300018040\|Ga0187862_10683075	Not Available	601	Open in IMG/M
3300018042\|Ga0187871_10833673	Not Available	515	Open in IMG/M
3300018046\|Ga0187851_10063136	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2376	Open in IMG/M
3300018085\|Ga0187772_10299500	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1101	Open in IMG/M
3300018088\|Ga0187771_10500707	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1028	Open in IMG/M
3300018088\|Ga0187771_11827376	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	516	Open in IMG/M
3300019256\|Ga0181508_1540543	Not Available	520	Open in IMG/M
3300023068\|Ga0224554_1150901	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	504	Open in IMG/M
3300027825\|Ga0209039_10000720	All Organisms → cellular organisms → Bacteria	31915	Open in IMG/M
3300027854\|Ga0209517_10304758	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	929	Open in IMG/M
3300027896\|Ga0209777_10102820	Not Available	2432	Open in IMG/M
3300027896\|Ga0209777_10435709	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	979	Open in IMG/M
3300027905\|Ga0209415_10932166	Not Available	586	Open in IMG/M
3300030020\|Ga0311344_10965920	Not Available	669	Open in IMG/M
3300031258\|Ga0302318_10234677	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	894	Open in IMG/M
3300031261\|Ga0302140_10119701	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2581	Open in IMG/M
3300031344\|Ga0265316_10981541	Not Available	588	Open in IMG/M
3300031708\|Ga0310686_115322470	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	875	Open in IMG/M
3300031788\|Ga0302319_10974081	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	813	Open in IMG/M
3300031813\|Ga0316217_10193077	Not Available	843	Open in IMG/M
3300032160\|Ga0311301_10068015	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	7591	Open in IMG/M
3300032160\|Ga0311301_11930042	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	694	Open in IMG/M
3300032160\|Ga0311301_12230210	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	627	Open in IMG/M
3300032160\|Ga0311301_12399075	Not Available	595	Open in IMG/M
3300032160\|Ga0311301_12982259	Not Available	510	Open in IMG/M
3300032770\|Ga0335085_10007358	All Organisms → cellular organisms → Bacteria	17130	Open in IMG/M
3300032770\|Ga0335085_12345233	Not Available	533	Open in IMG/M
3300032805\|Ga0335078_11324724	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	820	Open in IMG/M
3300032805\|Ga0335078_11575075	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	729	Open in IMG/M
3300032828\|Ga0335080_10552428	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1217	Open in IMG/M
3300032892\|Ga0335081_11256093	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	839	Open in IMG/M
3300032892\|Ga0335081_11799585	Not Available	663	Open in IMG/M
3300033402\|Ga0326728_10000517	All Organisms → cellular organisms → Bacteria	151151	Open in IMG/M
3300033402\|Ga0326728_10000638	All Organisms → cellular organisms → Bacteria	134406	Open in IMG/M
3300033402\|Ga0326728_10009922	All Organisms → cellular organisms → Bacteria	22555	Open in IMG/M
3300033402\|Ga0326728_10010939	All Organisms → cellular organisms → Bacteria	20974	Open in IMG/M
3300033402\|Ga0326728_10031221	All Organisms → cellular organisms → Bacteria	8977	Open in IMG/M
3300033402\|Ga0326728_10101413	All Organisms → cellular organisms → Bacteria	3470	Open in IMG/M
3300033402\|Ga0326728_10207490	All Organisms → cellular organisms → Bacteria	1957	Open in IMG/M
3300033402\|Ga0326728_10321434	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1390	Open in IMG/M
3300033402\|Ga0326728_11125826	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	529	Open in IMG/M
3300033405\|Ga0326727_10070530	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	5049	Open in IMG/M
3300033405\|Ga0326727_10303867	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1568	Open in IMG/M
3300033405\|Ga0326727_11048461	Not Available	588	Open in IMG/M
3300033977\|Ga0314861_0070273	All Organisms → cellular organisms → Bacteria	1866	Open in IMG/M
3300033982\|Ga0371487_0372721	Not Available	624	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.29%
Host-Associated	Host-Associated	1.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	53.85%
Aquatic	Environmental → Aquatic	44.44%
Plants	Host-Associated → Plants	1.71%

Habitat	Taxonomy	Distribution
Freshwater	Environmental → Aquatic → Freshwater	43.59%
Soil	Environmental → Terrestrial → Soil	38.46%
Peat	Environmental → Terrestrial → Peat	15.38%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.71%
Sediment	Environmental → Aquatic → Sediment	0.85%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	41.03%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	24.79%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	15.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	13.68%
Lentic	Environmental → Aquatic → Freshwater → Lentic	2.56%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	0.85%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	36.75%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	15.38%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	13.68%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	13.68%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	11.11%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	3.42%
Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment	1.71%
Hypolimnion	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion	0.85%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.85%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	0.85%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	20.51%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	13.68%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	11.11%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	11.11%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	5.98%
Fen	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Fen	5.98%
Bog	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Bog	5.13%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	4.27%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	3.42%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	3.42%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	2.56%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	2.56%
Freshwater Lake Sediment	Environmental → Aquatic → Freshwater → Lentic → Sediment → Freshwater Lake Sediment	1.71%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.71%
Freshwater	Environmental → Aquatic → Freshwater → Lentic → Hypolimnion → Freshwater	0.85%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.85%
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	0.85%
Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005534	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen07_05102014_R1	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300009093	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG	Host-Associated	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009640	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300009824	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_6_BS metaG	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300014151	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_60_metaG	Environmental	Open in IMG/M
3300014152	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_60_metaG	Environmental	Open in IMG/M
3300014153	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_60_metaG	Environmental	Open in IMG/M
3300014155	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_60_metaG	Environmental	Open in IMG/M
3300014159	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_60_metaG	Environmental	Open in IMG/M
3300014160	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_30_metaG	Environmental	Open in IMG/M
3300014162	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_30_metaG	Environmental	Open in IMG/M
3300014164	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_30_metaG	Environmental	Open in IMG/M
3300014167	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaG	Environmental	Open in IMG/M
3300014200	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_30_metaG	Environmental	Open in IMG/M
3300014201	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin23_10_metaG	Environmental	Open in IMG/M
3300014490	Permafrost microbial communities from Stordalen Mire, Sweden - 611E1M metaG	Environmental	Open in IMG/M
3300014491	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2D metaG	Environmental	Open in IMG/M
3300014492	Permafrost microbial communities from Stordalen Mire, Sweden - 612S2M metaG	Environmental	Open in IMG/M
3300014493	Permafrost microbial communities from Stordalen Mire, Sweden - 712S2M metaG	Environmental	Open in IMG/M
3300014494	Permafrost microbial communities from Stordalen Mire, Sweden - 712E3D metaG	Environmental	Open in IMG/M
3300014496	Permafrost microbial communities from Stordalen Mire, Sweden - 711E1D metaG	Environmental	Open in IMG/M
3300014498	Permafrost microbial communities from Stordalen Mire, Sweden - 812E2M metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014654	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin06_10_metaG	Environmental	Open in IMG/M
3300014838	Permafrost microbial communities from Stordalen Mire, Sweden - 812S3M metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300014839	Permafrost microbial communities from Stordalen Mire, Sweden - 712E1D metaG (Illumina Assembly)	Environmental	Open in IMG/M
3300016700	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300016701	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_30_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017925	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_40	Environmental	Open in IMG/M
3300017929	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_100	Environmental	Open in IMG/M
3300017935	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_40	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017948	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_4_10	Environmental	Open in IMG/M
3300017970	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300017988	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin02_30_metaG	Environmental	Open in IMG/M
3300018022	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_40	Environmental	Open in IMG/M
3300018025	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_20_100	Environmental	Open in IMG/M
3300018030	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_100	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018042	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_16_10	Environmental	Open in IMG/M
3300018046	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018088	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_10_MG	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300023068	Peat soil microbial communities from Stordalen Mire, Sweden - 717 S2 20-24	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027854	Peat soil microbial communities from Weissenstadt, Germany - SII-2010 (SPAdes)	Environmental	Open in IMG/M
3300027896	Freshwater lake sediment microbial communities from the University of Notre Dame, USA, for methane emissions studies -HBP12 HB (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300030020	II_Bog_N1 coassembly	Environmental	Open in IMG/M
3300031258	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_1	Environmental	Open in IMG/M
3300031261	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - I_Bog_E1_1	Environmental	Open in IMG/M
3300031344	Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG	Host-Associated	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031788	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_2	Environmental	Open in IMG/M
3300031813	Freshwater microbial communities from Trout Bog Lake, Wisconsin, USA - 1anoA	Environmental	Open in IMG/M
3300032160	Sb_50d combined assembly (MetaSPAdes)	Environmental	Open in IMG/M
3300032770	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.5	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032828	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.4	Environmental	Open in IMG/M
3300032892	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.5	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M
3300033405	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB29MY	Environmental	Open in IMG/M
3300033977	Tropical peat soil microbial communities from peatlands in Loreto, Peru - SJ75	Environmental	Open in IMG/M
3300033982	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB22AY SIP fraction	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100406862	3300003218	Bog Forest Soil	MKFEDAGRALDREFDKLRRFLNHEVTPQTHKEMAEFLRKSADRLTKMAERLENEEAKP*
Ga0062386_1016844452	3300004152	Bog Forest Soil	MAMNFEDAGRAIDREFEKLRKFFDDEVRPETKKEAAEFLRKSAERLTKMAERLEKAKS*
Ga0070735_108796531	3300005534	Surface Soil	MKFEEAGRALDREFEKLRKYVREEIRPETKKEAAEFLRKSAARMTRLA
Ga0070731_103287962	3300005538	Surface Soil	MNFEDVGRAIDREFEKLRKYFNDEVRPETRKEAAEFLRKSATRMTKMAERLEKEMTKP*
Ga0075030_1003223343	3300006162	Watersheds	MKFEDAGRAIDREFEKLRKYFDDEVRPETKKEAAEFLRKSAERLTKMAERLEKEKPKS*
Ga0105240_114044452	3300009093	Corn Rhizosphere	MKFEDAGRTLDREFEKLRKYLNDEVRPETRRETAEFLRKSAQRLTKLAERLEKEKPKS*
Ga0116128_10555781	3300009518	Peatland	MNFEDAGRAIDREFEKLRKYFDNEVRPETKKETADFLRKSAERLKKMAERLEKEEAKS*
Ga0116126_12145661	3300009640	Peatland	RAIDREFEKLRKFFNDEVRPETKKETAEFLRKSADRLIKVAERLEKAKS*
Ga0116126_12211622	3300009640	Peatland	MKFEDAGRALDSEFEKLRKFLSNEVRPQTRKETAEFLRKSAARLTKMAERLEKEEAKS*
Ga0116130_12939182	3300009762	Peatland	MKFEDAGRVIDREFDKLRKFFNDEVRPETKKETAEFLRKSADRLIKVAERLEKAKS*
Ga0116219_103538172	3300009824	Peatlands Soil	MKFEEAGRALDSEFDKLRKFLSNEVRPQTRKETAEFLRKSAVRLTKMAERLEKEETKP*
Ga0074046_102442052	3300010339	Bog Forest Soil	MKFEDAGRAIDREFEKLRKFLNDEVRPETKKETAEFLRKSADRLTKMAERLEKEKAKP*
Ga0074045_102302372	3300010341	Bog Forest Soil	MNFEDAGRAIDREFEKLRKYFDDEVRPETKKETAEFLRKSASRLTKLAERLEKQVTKP*
Ga0074044_107773242	3300010343	Bog Forest Soil	RAIDREFEKLRKYFDDEVRPETKKETAEFLRKSASRLTKLAERLEKQVTKP*
Ga0136449_1000749635	3300010379	Peatlands Soil	MKFEDAGRALDVEFDKLRKFLSNEVRPQTRKETAEFLRKSAQRLTKMAERLETEEAKP*
Ga0136449_1005815781	3300010379	Peatlands Soil	MTFEDAGRTLDREFEKLRKFLNDEVRPETKKEAAEFLRKSAERLTKMAERLEKEEAKP*
Ga0136449_1031476831	3300010379	Peatlands Soil	MTFEEAGRALDREFEKLRKFLRDEVRPETKKEAAEFLKKSAARMTKLAERLDREGKGS*
Ga0136449_1035681911	3300010379	Peatlands Soil	MKFEDAGRVIDREFEKLRKFFDDEVRPETKKDTAEFLRKSADRLIKMAERLEKAKT*
Ga0136449_1044668742	3300010379	Peatlands Soil	MKFEDAGRALDTEFEKLRKFLNNEVRPQTRKETAEFLRKSAARLTKMAERLEKEETKP*
Ga0181539_100012657	3300014151	Bog	LKRARGLARITTIRLERAMNFEDAGRAIDREFEKLRKFFNDEVRPETKKEAAEFLRKSANRLTKMAERLEKEEAKP*
Ga0181539_11851182	3300014151	Bog	MKFEDAGRALDAEFERLRKFLNNEVRPQTRKETAEFLRKSAARLTKMAERLEKEETKP*
Ga0181533_100004966	3300014152	Bog	MNFEDAGRAIDREFEKLRKFFNDEVRPETKKEAAEFLRKSANRLTKMAERLEKEEAKP*
Ga0181527_11906401	3300014153	Bog	MTFEEAGRALDREFEKLRKFLKDEVRPETKKEAAEFLRKSAARLTKMAERLEKEKAKS*
Ga0181524_101148401	3300014155	Bog	MNFEDAGRAIDREFEKLRKYFDNEVRPETKKETADFLRKSADRLKKMAERLEKEEAKP*
Ga0181530_102429512	3300014159	Bog	MNFEDAGRAIDREFEKLRKYFDNEVRPETKKETADFLRKSAERLKKMAERLEKEEAKP*
Ga0181530_105864612	3300014159	Bog	MNFQDAGRGIDREFEKLRSYFNNEVRPETKKEAAEFLRKSADRLTKMAEQLEKE
Ga0181517_100126446	3300014160	Bog	MRFEDAGKAIDRELDKLRKFFDEEVRPETKKETAEFLRKSAARLTRMAERLEKEQEKP*
Ga0181538_105244632	3300014162	Bog	MTFEEAGRALDREFEKLRKFLRDEVRPETKKEAAEFLKKSAARMTKLAERLEREGKGS*
Ga0181538_105586041	3300014162	Bog	LARITIIRLERVMNFEDVGRAVDREFDKLRKFFNDEVRPETKKEAAEFLRKSADRLTKMAERLEKEEAKP*
Ga0181532_103920011	3300014164	Bog	MNFEDAGRAIDREFQKLRKYFDNEIRPETKKETADFLRKSADRLREMAERLEKEETKP*
Ga0181532_108098182	3300014164	Bog	MKFEDAGRALDSEFEKLRKFLSNEVRPQTRKETAEFLRKSAARLTKMAERLEKEETKP*
Ga0181528_103752791	3300014167	Bog	MTFEDAGRTIDREFEKLRKYFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPK
Ga0181526_102228002	3300014200	Bog	MNFEDAGRTLDHEFEKLRKFLSDEVRPQTRKETAEFLRKSADHLRNLAERLEKEKEEAKP
Ga0181526_105715181	3300014200	Bog	MTFEDAGRALDREFEKLRKFLKDEVRPETKKEAAEFLRKSAARMTRFAERLEKGETKP*
Ga0181537_110284091	3300014201	Bog	MTFEDAGRTIDREFEKLRKYFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPEP*
Ga0182010_100442461	3300014490	Fen	MNFEDAGRAIDREFEKLRKYFNDEVRPETKKEAAEFLRKSAARMTRMAERLEKEEAKS*
Ga0182014_100532621	3300014491	Bog	MNFEDAGRAVDREFDKLRKFFNDEVRPETKKEAAEFLRKSAERLTKMAEQLEKEKAKP*
Ga0182014_101046382	3300014491	Bog	MTFEDAGRAIDREFEKLRKYFNDEVRPETKKETAEFLRKSAARMIKMAERLEKEQPKS*
Ga0182013_102718133	3300014492	Bog	MTFEDAGRTIDREFEKLRKYFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPKP*
Ga0182016_100254463	3300014493	Bog	MNFQDAGRAIDGEFEKLRKYFKDEVRPETKKEAAEFLRKSAERLTKMAERLEKEEAKP*
Ga0182017_104457411	3300014494	Fen	MNFEDVGRAIDREFEKLRKYFNDEVRPETKKEAAEFLRKFAARMTKMAERLEKEEVKS*
Ga0182011_100548453	3300014496	Fen	MNFEDAGRAIDREFEKLRKYFNDEVRPETKKEAAEFLRKSAARMTKMAERLEKEEVKS*
Ga0182011_108061101	3300014496	Fen	MNFEDVGRAIDREFEKLRKYFNDEVRPETKKEAAEFLRKSAARMTKMAERLEKEEVKS*
Ga0182019_107878821	3300014498	Fen	MNFEDVGRAIDREFEKLRKYFNDEVRPETKKEAAEFLRKSAARMTRMAERLEKEEAKS*
Ga0181536_100530843	3300014638	Bog	MNFEDAGRAIDREFEKLRKFFNDEVRPETKKEAAEFLRKSANRLTKMAERL
Ga0181536_100549434	3300014638	Bog	EDAGRALDREFEKLRKFLNNEVRPETKKETAEFLRRSADRLRKMAERLEKEEAKP*
Ga0181536_103463022	3300014638	Bog	MKFEDAGRALDAEFERLRKFLNNEVRPQTRKETAEFLRKSAARLTKMA
Ga0181525_104811201	3300014654	Bog	MTFEDAGRAIDREFEKLRKFFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPKA*
Ga0182030_109814041	3300014838	Bog	MTFEDAGRAIDREFEKLRKYFNDEVRPETKKETAEFLRKSAGRLTKMAERLEKEQPKV*
Ga0182030_110215922	3300014838	Bog	MNFEDVGRAIDREFEKLRKYFNDEVRPETRKEAAEFLRKSATRMTKMAERLEKEQTKP*
Ga0182027_100804864	3300014839	Fen	MRFEDAGKAIDRELDKLRKFFDEEVRPETRKETAEFLRKSAARLTRMAERLEKEQKEP*
Ga0182027_101537964	3300014839	Fen	MKFEDAGRALDSEFEKLRKFLNDEVRPQTRKETAEFLRKTAARLTKMAERLEKEETKP*
Ga0181513_11870701	3300016700	Peatland	VMTFEDAGRTLDQEFEKLRKYFNDEVRPQTRKETAEFLRKSAERLTKMAERLEKDETKP
Ga0181509_12644762	3300016701	Peatland	TFEDAGRAIDREFEKLRKYFNDEFRPETKKETAEFLRKSAARMIKMAERLEKEQPKS
Ga0187856_10003648	3300017925	Peatland	MNFEDAGRAIDREFEKLRKYFDNEVRPETKKETADFLRKSAERLKKMAERLEKEEAKS
Ga0187849_100124215	3300017929	Peatland	MKFEDAGRAIDREFDKLRKFFNNEVRPETKKETAEFLRKSADRLTKMAERLEKEKAQP
Ga0187848_102340071	3300017935	Peatland	MNFEDAGRAIDREFEKLRKFFNDEVRPETKKETAEFLRKSADRLIKVAERLEKAKS
Ga0187819_106328772	3300017943	Freshwater Sediment	MKFEDAGRALDSEFDKLRKFLSNEVRPQTRKETAEFLRKSAARLTKMAERLEKEETKP
Ga0187847_105132292	3300017948	Peatland	MNFQDAGRTIDGEFEKLRKYFKDEVRPETKKEAAEFLRKSAERLTKMAERLEKEEAKP
Ga0187783_100223046	3300017970	Tropical Peatland	MKFEDAGRALDSEFDKLRKFLSNEIRPQTRKETAEFLRKSAARLTKMAERLEKEETKP
Ga0187783_112450112	3300017970	Tropical Peatland	MNFEDAGRAIDREFGKLRKYFDNEIRPETKKETADFLRKSAERLKKMAERLEKDEAKP
Ga0181520_1001433010	3300017988	Bog	MNFEDAGRAIDREFQKLRKYFDNEIRPETKKETADFLRKSADRLREMAERLEKDEAKP
Ga0181520_100415775	3300017988	Bog	MRFEDAGKAIDRELDKLRKFFDEEVRPETKKETAEFLRKSAARLTRMAERLEKEQEKP
Ga0181520_105598261	3300017988	Bog	MNFEDVGRAIDREFEKLRKYFNDEVRPETKKEAAEFLRKSATRMTKMAERLEKDRAKP
Ga0181520_105728792	3300017988	Bog	MNFEDVGRAIDREFQKLRKYFNDEVRPETKKEAAEFLRKSAARLTKMAERLEKEETKP
Ga0187864_104943952	3300018022	Peatland	MTFEEAGRALDREFEKLRKFLKDEVRPETKKEAAEFLRKSADRLTKMAERLEKEEAKP
Ga0187885_100887172	3300018025	Peatland	MKFEDAGRAIDREFDKLRKFFNNEVRPETKKETAEFLRKSADRLTKMAERLEKEEAKS
Ga0187869_101488043	3300018030	Peatland	RARSLARIINIGLERIMNFQDAGRAIDREFEKLRKYFDNEVRPETKKETADFLRKSAERLKKMAERLEKEEAKS
Ga0187863_103200541	3300018034	Peatland	MKFEDAGRALDSEFEKLRKFLSNEVRPQTRKETAEFLRKSAARLTKMAERLEKEETKP
Ga0187863_105850372	3300018034	Peatland	MNFEDAGRAIDREFQKLRKYFDNEIRPETKKETADFLRKSADRLREMAERLEKEETKP
Ga0187855_104592842	3300018038	Peatland	VMNFQDAGRAIDGEFEKLRKYFKDEVRPETKKEAAEFLRKSAERLTKMAERLEKEEAKP
Ga0187862_106830752	3300018040	Peatland	MNFEDAGRAIDREFEKLRKYFDNEVRPETKKETADFLRKSAERLKKMAEQLEKE
Ga0187871_108336732	3300018042	Peatland	MGQVMKFEDAGRTLDRKFEKLRKFLNNEIRPQTRKDTAEFLRKSAERLTKIAERLEKDEAKP
Ga0187851_100631361	3300018046	Peatland	GRAIDGEFEKLRKYFKDEVRPETKKEAAEFLRKSAERLTKMAERLEKEEAKP
Ga0187772_102995002	3300018085	Tropical Peatland	MKFEDAGRAIDLEINKLRKFLDKEVPPQTKKEAAEFLRKSADRLTKMAERLEKERETAPPPTSC
Ga0187771_105007072	3300018088	Tropical Peatland	MKFEDAGRALDRELEKLREYLSKEIRPQTRKETAEFLRKSADRLTKLAARLEKEEAKP
Ga0187771_118273761	3300018088	Tropical Peatland	MNFEDAGRAIDRELDKLRKFLDNEVRPQTKKEAAEFLRKSAERLTKLAERLEKTKSSPP
Ga0181508_15405432	3300019256	Peatland	GNMTFEDAGRAIDREFEKLRKFFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPKD
Ga0224554_11509012	3300023068	Soil	MNFEDAGRAVDREFDKLRKFFNDEVRPETKKEAAEFLRKSAERLTKMAEQLEKEKAKP
Ga0209039_1000072019	3300027825	Bog Forest Soil	MKFEDAGRALDREFDKLRRFLNHEVTPQTHKEMAEFLRKSADRLTKMAERLENEEAKP
Ga0209517_103047581	3300027854	Peatlands Soil	MKFEDAGRALDVEFDKLRKFLSNEVRPQTRKETAEFLRKSAQRLTKMAERLETEEAKP
Ga0209777_101028202	3300027896	Freshwater Lake Sediment	MTFEDAGRALDREFEKLRKFLNNEVRPQTRKETAEFLRKSADRLTRMAERLE
Ga0209777_104357091	3300027896	Freshwater Lake Sediment	MTFEDAGWALYREFEKLRKFLNNEVRPQTRKETAEFLRKSADRLTRMAERLEKEEVKP
Ga0209415_109321661	3300027905	Peatlands Soil	MKFEDAGRALDVEFDKLRKFLSNEVRPQTRKETAEFLRKSAQRLTKMAERLEKEETKP
Ga0311344_109659203	3300030020	Bog	MTFEDAGRTIDREFEKLRKYFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPKPF
Ga0302318_102346772	3300031258	Bog	TIDREFEKLRKYFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPKP
Ga0302140_101197014	3300031261	Bog	MTFEDAGRTIDREFEKLRKYFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPKP
Ga0265316_109815411	3300031344	Rhizosphere	MNFEDAGKTLDREFEKLRKYFNDEVRPETKKETAEFLRKSAARLTRLAERLEKDDSKP
Ga0310686_1153224701	3300031708	Soil	MTFEEAGRALDREFEKLRKFLRDEVRPETKKEAAEFLKKSAARMTKLAERLDREGKAS
Ga0302319_109740812	3300031788	Bog	MTFEDAGRAIDREFEKLRKYFNDEVRPETKKETAEFLRKSAGRMIKMAERLEKEQPKS
Ga0316217_101930772	3300031813	Freshwater	MTFEDAGRAIDREFEKLRKYFNDEVRPETKKETAEFLRKSAARLTKMAERLEKEQPKP
Ga0311301_100680154	3300032160	Peatlands Soil	MKFEEAGRALDSEFDKLRKFLSNEVRPQTRKETAEFLRKSAVRLTKMAERLEKEETKP
Ga0311301_119300422	3300032160	Peatlands Soil	MKFEDAGRVIDREFEKLRKFFDDEVRPETKKDTAEFLRKSADRLIKMAERLEKAKT
Ga0311301_122302102	3300032160	Peatlands Soil	MKFEDAGRALDTEFEKLRKFLNNEVRPQTRKETAEFLRKSAARLTKMAERLEKEETKP
Ga0311301_123990752	3300032160	Peatlands Soil	MNFEDAGRTLDREFEKLRKFLAKEVRPQTRKETADFLRKSAERLTKMAERLEKHDEEAKP
Ga0311301_129822591	3300032160	Peatlands Soil	MTFEEAGRALDREFEKLRKFLRDEVRPETKKEAAEFLKKSAARMTKLAERLDREGKGS
Ga0335085_100073588	3300032770	Soil	MKFEDAGRALDREFEKLRKFLANEVRPQTRKETAEFLRKSADRLTKMAERLEKDEAKP
Ga0335085_123452331	3300032770	Soil	MKFEDAGRTLDREFEKLRKFLAEEVRPQTRKDTAEFLRKSAERLTKLAERLEKEREGPKA
Ga0335078_113247242	3300032805	Soil	DAGRTLDREFDKLRKFLASEVRPQTRKDTADFLRKSAERLKKMAERLEKASEEPKA
Ga0335078_115750752	3300032805	Soil	MKFEDAGRTLDREFEKLRKFLANEVHPQTRKDTAEFLRKSAERLTKLAERLEKQHEVPKA
Ga0335080_105524281	3300032828	Soil	MKFEDAGRVLDREFEKLRKYLDREVKPRTRNEAAEFLRKSAVRLTRLAERLEKNNDEAKS
Ga0335081_112560931	3300032892	Soil	MKFQDAGRALDRELEKLRDYLDKEIRPETRKEAAEFLRKSADRLKKMAERLEKDQAKPGSPC
Ga0335081_117995851	3300032892	Soil	MKFEDAGRALDREIEKLRKFIDEELRPQTRRESAEFLRKSADRLIKLAERIEKEEAKP
Ga0326728_1000051771	3300033402	Peat Soil	MKFEDAGRALDAEFDKLRKYLSNEIRPQTRKETVEFLRKSADRLTKMAERLEKEEAKP
Ga0326728_1000063840	3300033402	Peat Soil	MNFEDAGRTLDREFEKLRKFLNDEVRPQTKKETADFLRKSAVRLVKMAERLEKEEAKP
Ga0326728_100099226	3300033402	Peat Soil	MNFEDAGRAIDREFEKLRKFFDDEVRPETKKEAAEFLRKSADRLTKLAERLEKTKPSPPC
Ga0326728_100109398	3300033402	Peat Soil	MKFEEAGRALDRELDKLRKYLSNEIRPQTRKETAEFLRKSADRLMKMAERLEKEEAKP
Ga0326728_100312216	3300033402	Peat Soil	MNFEDAGRAIDREFEKLRKFFDDEVRPETKKEAAEFLRKSADRLMKMAERLEKAKS
Ga0326728_101014136	3300033402	Peat Soil	MRFEDAGRALDREFEKLRKFLNDEVRPQTRKETAEFLRKSAARLTKMAERLEKE
Ga0326728_102074904	3300033402	Peat Soil	RFEDAGRALDREFEKLRKFLNDEVRPQTRKETAEFLRKSAARLTKMAERLEKEEKEP
Ga0326728_103214342	3300033402	Peat Soil	MKFEDAGRAIDREFEKLRKFLNDEVRPETKKEAAEFLRKSADRLAKLAERLEKAKP
Ga0326728_111258261	3300033402	Peat Soil	MNFEDAGRAIDREFEKLRKFFADEVRPETRKEAADFLRKSADRLTKMAE
Ga0326727_100705301	3300033405	Peat Soil	MNFEDAGRALDAEFDRLRKFLSEEVRPQTRKETAEFLRKSADRLTKMAERLEKEEAKP
Ga0326727_103038671	3300033405	Peat Soil	MRFEDAGRALDREFEKLRKFLNDEVRPQTRKETAEFLRKSAARLTKMAER
Ga0326727_110484611	3300033405	Peat Soil	MNFEDAGRAIDREFEKLRKFLNDEVRPETKKETAEFLRKSADRLAKMAERLEKEEAKP
Ga0314861_0070273_1062_1238	3300033977	Peatland	MKFEDAGRALDRELEKLREYLSKEIRPQTRKETAEFLRKSADRLTKMAARLEKEEAKP
Ga0371487_0372721_420_596	3300033982	Peat Soil	MRFEDAGRALDREFEKLRKFLNDEVRPQTRKETAEFLRKSAARLTKMAERLEKEEKEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F076806

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences