Metagenome Family F077485

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077485
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	86 residues
Representative Sequence	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDVMCKQV
Number of Associated Samples	81
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	73.50 %
% of genes near scaffold ends (potentially truncated)	35.04 %
% of genes from short scaffolds (< 2000 bps)	78.63 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	No

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.940 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere (29.915 % of family members)
Environment Ontology (ENVO)	Unclassified (23.932 % of family members)
Earth Microbiome Project Ontology (EMPO)	Host-associated → Plant → Plant rhizosphere (49.573 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 80.23% β-sheet: 0.00% Coil/Unstructured: 19.77%
Feature Viewer

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Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF04392	ABC_sub_bind	2.56
PF13356	Arm-DNA-bind_3	1.71
PF00589	Phage_integrase	1.71
PF12244	DUF3606	1.71
PF03401	TctC	0.85
PF13340	DUF4096	0.85
PF11003	DUF2842	0.85
PF00196	GerE	0.85
PF12706	Lactamase_B_2	0.85
PF13458	Peripla_BP_6	0.85
PF07369	DUF1488	0.85
PF01068	DNA_ligase_A_M	0.85
PF14023	DUF4239	0.85
PF00903	Glyoxalase	0.85
PF13472	Lipase_GDSL_2	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	2.56
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.85
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.85
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
All Organisms	root	All Organisms	29.06 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
cellular organisms	root	All Organisms → cellular organisms	28.21 %
Viruses	superkingdom	All Organisms → Viruses	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	28.21 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	23.93 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	17.95 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	7.69 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	5.13 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.13 %
Hyphomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae	1.71 %
Xanthobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae	0.85 %
Hyphomicrobiales incertae sedis	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis	0.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.13 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.71 %
Pseudorhodoplanes	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes	0.85 %
Pseudolabrys	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys	0.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.94 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	5.13 %
Hyphomicrobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1.71 %
Pseudorhodoplanes sinuspersici	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	0.85 %
Pseudolabrys taiwanensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	0.85 %
Acetobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	0.85 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	0.85 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000364\|INPhiseqgaiiFebDRAFT_102002154	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	8067	Open in IMG/M
3300000364\|INPhiseqgaiiFebDRAFT_102005089	Not Available	1411	Open in IMG/M
3300000597\|AF_2010_repII_A1DRAFT_10069813	Not Available	891	Open in IMG/M
3300000787\|JGI11643J11755_11770885	Not Available	545	Open in IMG/M
3300000789\|JGI1027J11758_12961802	All Organisms → cellular organisms → Bacteria → Proteobacteria	1808	Open in IMG/M
3300004479\|Ga0062595_100011186	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2970	Open in IMG/M
3300004633\|Ga0066395_10815600	Not Available	561	Open in IMG/M
3300005294\|Ga0065705_10779796	Not Available	618	Open in IMG/M
3300005332\|Ga0066388_100036374	All Organisms → cellular organisms → Bacteria	4764	Open in IMG/M
3300005332\|Ga0066388_100169398	Not Available	2782	Open in IMG/M
3300005332\|Ga0066388_100485679	All Organisms → cellular organisms → Bacteria → Proteobacteria	1873	Open in IMG/M
3300005332\|Ga0066388_100714247	Not Available	1607	Open in IMG/M
3300005332\|Ga0066388_101369113	All Organisms → cellular organisms → Bacteria → Proteobacteria	1226	Open in IMG/M
3300005332\|Ga0066388_101484084	Not Available	1184	Open in IMG/M
3300005337\|Ga0070682_101122292	Not Available	659	Open in IMG/M
3300005439\|Ga0070711_100644313	Not Available	888	Open in IMG/M
3300005466\|Ga0070685_10037180	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Acetobacteraceae	2756	Open in IMG/M
3300005535\|Ga0070684_101720806	Not Available	592	Open in IMG/M
3300005544\|Ga0070686_101115691	Not Available	652	Open in IMG/M
3300005713\|Ga0066905_100018417	Not Available	3633	Open in IMG/M
3300005713\|Ga0066905_101775302	Not Available	568	Open in IMG/M
3300005713\|Ga0066905_102002442	Not Available	537	Open in IMG/M
3300005719\|Ga0068861_102143715	Not Available	559	Open in IMG/M
3300005937\|Ga0081455_10004604	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	15401	Open in IMG/M
3300005937\|Ga0081455_10038309	All Organisms → cellular organisms → Bacteria → Proteobacteria	4246	Open in IMG/M
3300005937\|Ga0081455_10043900	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	3906	Open in IMG/M
3300005983\|Ga0081540_1039528	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2472	Open in IMG/M
3300006049\|Ga0075417_10023968	All Organisms → cellular organisms → Bacteria	2463	Open in IMG/M
3300006049\|Ga0075417_10035775	Not Available	2082	Open in IMG/M
3300006049\|Ga0075417_10117828	Not Available	1216	Open in IMG/M
3300006049\|Ga0075417_10566298	Not Available	575	Open in IMG/M
3300006194\|Ga0075427_10015716	Not Available	1170	Open in IMG/M
3300006844\|Ga0075428_100032809	All Organisms → cellular organisms → Bacteria → Proteobacteria	5734	Open in IMG/M
3300006844\|Ga0075428_100334246	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1627	Open in IMG/M
3300006844\|Ga0075428_100645150	Not Available	1129	Open in IMG/M
3300006844\|Ga0075428_100696445	Not Available	1082	Open in IMG/M
3300006845\|Ga0075421_100527505	Not Available	1398	Open in IMG/M
3300006845\|Ga0075421_101829110	Not Available	652	Open in IMG/M
3300006847\|Ga0075431_100556186	Not Available	1134	Open in IMG/M
3300006847\|Ga0075431_101460891	Not Available	642	Open in IMG/M
3300006852\|Ga0075433_10155397	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	2035	Open in IMG/M
3300006852\|Ga0075433_11779204	Not Available	530	Open in IMG/M
3300006871\|Ga0075434_100792646	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	964	Open in IMG/M
3300006904\|Ga0075424_102705357	Not Available	518	Open in IMG/M
3300006914\|Ga0075436_101158866	Not Available	583	Open in IMG/M
3300006969\|Ga0075419_11373609	Not Available	526	Open in IMG/M
3300007076\|Ga0075435_100204746	Not Available	1672	Open in IMG/M
3300009100\|Ga0075418_10262753	Not Available	1839	Open in IMG/M
3300009100\|Ga0075418_11742384	Not Available	677	Open in IMG/M
3300009101\|Ga0105247_11828732	Not Available	506	Open in IMG/M
3300009147\|Ga0114129_10180360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2874	Open in IMG/M
3300009147\|Ga0114129_11246336	Not Available	924	Open in IMG/M
3300009147\|Ga0114129_12248394	Not Available	655	Open in IMG/M
3300009162\|Ga0075423_10396199	Not Available	1449	Open in IMG/M
3300009168\|Ga0105104_10687260	Not Available	587	Open in IMG/M
3300010043\|Ga0126380_10009908	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	4230	Open in IMG/M
3300010043\|Ga0126380_10300952	Not Available	1141	Open in IMG/M
3300010047\|Ga0126382_11185708	Not Available	683	Open in IMG/M
3300010047\|Ga0126382_11470658	Not Available	625	Open in IMG/M
3300010048\|Ga0126373_12304807	Not Available	599	Open in IMG/M
3300010358\|Ga0126370_10930543	Not Available	787	Open in IMG/M
3300010359\|Ga0126376_10105757	Not Available	2158	Open in IMG/M
3300010359\|Ga0126376_10210955	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1618	Open in IMG/M
3300010360\|Ga0126372_10638487	All Organisms → Viruses → Predicted Viral	1029	Open in IMG/M
3300010362\|Ga0126377_10514245	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	1231	Open in IMG/M
3300010362\|Ga0126377_11367146	Not Available	781	Open in IMG/M
3300010362\|Ga0126377_12513990	Not Available	591	Open in IMG/M
3300010366\|Ga0126379_11936479	Not Available	692	Open in IMG/M
3300010375\|Ga0105239_10771650	Not Available	1101	Open in IMG/M
3300010376\|Ga0126381_101392804	Not Available	1014	Open in IMG/M
3300010401\|Ga0134121_12217201	Not Available	586	Open in IMG/M
3300012941\|Ga0162652_100099443	Not Available	520	Open in IMG/M
3300012948\|Ga0126375_10250272	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1200	Open in IMG/M
3300012957\|Ga0164303_10909360	Not Available	617	Open in IMG/M
3300012989\|Ga0164305_10650366	Not Available	854	Open in IMG/M
3300013306\|Ga0163162_10721575	Not Available	1117	Open in IMG/M
3300014325\|Ga0163163_10028009	All Organisms → cellular organisms → Bacteria → Proteobacteria	5405	Open in IMG/M
3300015371\|Ga0132258_10457755	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Xanthobacteraceae → Pseudolabrys → Pseudolabrys taiwanensis	3182	Open in IMG/M
3300015371\|Ga0132258_12748896	Not Available	1227	Open in IMG/M
3300015371\|Ga0132258_13210676	Not Available	1127	Open in IMG/M
3300015372\|Ga0132256_100086932	All Organisms → cellular organisms → Bacteria → Proteobacteria	3008	Open in IMG/M
3300015374\|Ga0132255_101695114	Not Available	959	Open in IMG/M
3300018067\|Ga0184611_1113116	Not Available	948	Open in IMG/M
3300018076\|Ga0184609_10341540	Not Available	699	Open in IMG/M
3300021560\|Ga0126371_10072839	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3347	Open in IMG/M
3300021560\|Ga0126371_13616758	Not Available	521	Open in IMG/M
3300022694\|Ga0222623_10061453	All Organisms → cellular organisms → Bacteria	1450	Open in IMG/M
3300025900\|Ga0207710_10131360	Not Available	1203	Open in IMG/M
3300025931\|Ga0207644_11855438	Not Available	504	Open in IMG/M
3300026067\|Ga0207678_11183713	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	677	Open in IMG/M
3300027743\|Ga0209593_10132998	Not Available	901	Open in IMG/M
3300027873\|Ga0209814_10061531	Not Available	1572	Open in IMG/M
3300027873\|Ga0209814_10141611	Not Available	1030	Open in IMG/M
3300027873\|Ga0209814_10184303	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	900	Open in IMG/M
3300027873\|Ga0209814_10429177	Not Available	582	Open in IMG/M
3300027880\|Ga0209481_10021535	All Organisms → cellular organisms → Bacteria	2858	Open in IMG/M
3300027880\|Ga0209481_10135501	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Hyphomicrobium	1209	Open in IMG/M
3300027880\|Ga0209481_10406101	Not Available	699	Open in IMG/M
3300027907\|Ga0207428_10012971	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	7303	Open in IMG/M
3300027907\|Ga0207428_10365165	Not Available	1061	Open in IMG/M
3300028784\|Ga0307282_10319444	Not Available	749	Open in IMG/M
3300028828\|Ga0307312_10024959	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiales incertae sedis → Pseudorhodoplanes → Pseudorhodoplanes sinuspersici	3444	Open in IMG/M
3300028876\|Ga0307286_10241861	Not Available	660	Open in IMG/M
3300031170\|Ga0307498_10002225	Not Available	3039	Open in IMG/M
3300031538\|Ga0310888_10297753	Not Available	921	Open in IMG/M
3300031543\|Ga0318516_10156806	Not Available	1309	Open in IMG/M
3300031547\|Ga0310887_10162562	All Organisms → cellular organisms → Bacteria	1182	Open in IMG/M
3300031562\|Ga0310886_10157223	Not Available	1203	Open in IMG/M
3300031736\|Ga0318501_10503733	Not Available	660	Open in IMG/M
3300031770\|Ga0318521_10522735	Not Available	714	Open in IMG/M
3300031777\|Ga0318543_10229592	Not Available	826	Open in IMG/M
3300031799\|Ga0318565_10398754	Not Available	667	Open in IMG/M
3300031896\|Ga0318551_10774792	Not Available	557	Open in IMG/M
3300031944\|Ga0310884_10810552	Not Available	573	Open in IMG/M
3300032017\|Ga0310899_10660734	Not Available	528	Open in IMG/M
3300032044\|Ga0318558_10134916	Not Available	1180	Open in IMG/M
3300032122\|Ga0310895_10075679	Not Available	1310	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	55.56%
Host-Associated	Host-Associated	44.44%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	51.28%
Plants	Host-Associated → Plants	44.44%
Aquatic	Environmental → Aquatic	4.27%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	50.43%
Rhizosphere	Host-Associated → Plants → Rhizosphere	35.04%
Rhizoplane	Host-Associated → Plants → Rhizoplane	8.55%
Sediment	Environmental → Aquatic → Sediment	2.56%
Freshwater	Environmental → Aquatic → Freshwater	1.71%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	0.85%
Roots	Host-Associated → Plants → Roots	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	37.61%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	32.48%
Loam	Environmental → Terrestrial → Soil → Loam	12.82%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	5.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	2.56%
Soil	Host-Associated → Plants → Rhizosphere → Soil	2.56%
Sediment	Environmental → Aquatic → Freshwater → Sediment	1.71%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	0.85%
Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	32.48%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	21.37%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	8.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	6.84%
Agricultural	Environmental → Terrestrial → Soil → Unclassified → Agricultural	5.13%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	5.13%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	4.27%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.42%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	3.42%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	2.56%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	1.71%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	0.85%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	0.85%
Soil	Host-Associated → Plants → Roots → Rhizosphere → Soil	0.85%

Habitat	Taxonomy	Distribution
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	29.91%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	14.53%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	8.55%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural → Soil	5.13%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.42%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	3.42%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	3.42%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Freshwater Sediment	1.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	1.71%
Corn Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere	1.71%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere	1.71%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.71%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	0.85%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	0.85%
Switchgrass Rhizosphere	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Switchgrass Rhizosphere	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Roots → Rhizosphere → Soil → Switchgrass Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Corn Rhizosphere	0.85%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere	0.85%
Corn Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere	0.85%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000364	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300000597	Forest soil microbial communities from Amazon forest - 2010 replicate II A1	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000789	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300004633	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 1 MoBio	Environmental	Open in IMG/M
3300005294	Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 Bulk Soil	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005337	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005466	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG	Environmental	Open in IMG/M
3300005535	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG	Environmental	Open in IMG/M
3300005544	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005719	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2	Host-Associated	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300005983	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1	Host-Associated	Open in IMG/M
3300006049	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1	Host-Associated	Open in IMG/M
3300006194	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1	Host-Associated	Open in IMG/M
3300006844	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006847	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300006914	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5	Host-Associated	Open in IMG/M
3300006969	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3	Host-Associated	Open in IMG/M
3300007076	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4	Host-Associated	Open in IMG/M
3300009100	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD2	Host-Associated	Open in IMG/M
3300009101	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG	Host-Associated	Open in IMG/M
3300009147	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2)	Host-Associated	Open in IMG/M
3300009162	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD2	Host-Associated	Open in IMG/M
3300009168	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010375	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG	Host-Associated	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012957	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_207_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300013306	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG	Host-Associated	Open in IMG/M
3300014325	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG	Host-Associated	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300015372	Soil combined assembly	Host-Associated	Open in IMG/M
3300015374	Col-0 rhizosphere combined assembly	Host-Associated	Open in IMG/M
3300018067	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_5_coex	Environmental	Open in IMG/M
3300018076	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_coex	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300022694	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_30_coex	Environmental	Open in IMG/M
3300025900	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300025931	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026067	Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300027743	Freshwater sediment microbial communities from Prairie Pothole Lake near Jamestown, North Dakota, USA - PPLs Lake P7 Core (6) Depth 19-21cm September2015 (SPAdes)	Environmental	Open in IMG/M
3300027873	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027880	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3 (SPAdes)	Host-Associated	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300028784	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_121	Environmental	Open in IMG/M
3300028828	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_202	Environmental	Open in IMG/M
3300028876	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_140	Environmental	Open in IMG/M
3300031170	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 12_S	Environmental	Open in IMG/M
3300031538	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1	Environmental	Open in IMG/M
3300031543	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.176b2f20	Environmental	Open in IMG/M
3300031547	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4	Environmental	Open in IMG/M
3300031562	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D3	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031777	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f24	Environmental	Open in IMG/M
3300031799	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.066b5f21	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031944	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D1	Environmental	Open in IMG/M
3300032017	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D4	Environmental	Open in IMG/M
3300032044	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f20	Environmental	Open in IMG/M
3300032122	Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C0D4	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
INPhiseqgaiiFebDRAFT_1020021542	3300000364	Soil	MTNDDIHLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLDVMRKQV*
INPhiseqgaiiFebDRAFT_1020050892	3300000364	Soil	MTDDEVDLEAQWLKRELEKTYPRARALMDEVDAKDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHGLLLGVMRKQV*
AF_2010_repII_A1DRAFT_100698132	3300000597	Forest Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKDPLEWLAWRKDRRREEHELLLDLMCKQV*
JGI11643J11755_117708851	3300000787	Soil	MTDEAQWVKPELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPTEPLEWLAWRKDRRREEHELLLDVMRKQV*
JGI1027J11758_129618021	3300000789	Soil	MTNDDIHLEAQWLKRELEKTYPRARALMXEVDAXDYEAVCLFESXXEAFXXQYGREPKEPLEWLAWRKDRRREEHELLLDVMRKQV*
Ga0062595_1000111863	3300004479	Soil	MTDDDIHLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLDVMCKQA*
Ga0066395_108156002	3300004633	Tropical Forest Soil	MTDDEVDLEAQWLKRELEKTYPRARALMDDVDADDYQAVCLFESDVEAFCGQYGREPKEPLEWLAWRKDRRREEHELLLDVMRKEV*
Ga0065705_107797961	3300005294	Switchgrass Rhizosphere	MTDEVVDLEAQWVKRELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKNRRREEIELMRGVMRKHGLGDQQ*
Ga0066388_1000363747	3300005332	Tropical Forest Soil	MTDDDLDLEAQWLKRELEKTYPRARALMDDVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLDLMCKQV*
Ga0066388_1001693986	3300005332	Tropical Forest Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDLMCKQV*
Ga0066388_1004856794	3300005332	Tropical Forest Soil	VVDFEAQWVKRELEKTYHRARALMDEVDADDYEAVCLFESDVEAFCDQYGREPKEPLEWLAWRKDRRREEHELLPDVMRKQI*
Ga0066388_1007142472	3300005332	Tropical Forest Soil	MTDDDLDLEAQWLKRELEKTYPRARALMDDVDADDYEAVCLFESDVEAFSNQYGREPREPLEWLAWRKDRRREEHELLLDLMCKQV*
Ga0066388_1013691133	3300005332	Tropical Forest Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFCSQYGRGPKEPLEWLAWRKDRRREEHELLLDVMRKQV*
Ga0066388_1014840841	3300005332	Tropical Forest Soil	MTDDDIHLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLDVACKQA*
Ga0070682_1011222921	3300005337	Corn Rhizosphere	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV*
Ga0070711_1006443132	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTDDDIHLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLNEMCKQV*
Ga0070685_100371804	3300005466	Switchgrass Rhizosphere	RELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLNEMCKQV*
Ga0070684_1017208062	3300005535	Corn Rhizosphere	VVDSEAQWVKRELEKTYHRARALMDEVDADDYEAVCLFESDVEAFCDQYGREPKEPLEWLAWRNDRRREEHELLPDVMRKQV*
Ga0070686_1011156911	3300005544	Switchgrass Rhizosphere	ARRSPGSVPTCGLGAARLPSGGSCPDRLSGFETGKKSMTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV*
Ga0066905_1000184174	3300005713	Tropical Forest Soil	MTDDEVGLEAKWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDRYGREPKEPLEWLAWRKDRRTEEHELLLDVMRKHE*
Ga0066905_1017753021	3300005713	Tropical Forest Soil	MAHNVVDLEAQWLKREFEKTYRRARALMDEVDANDYEAVCLFESDMEAFCEQHGREPAEPVEWLTWRRDRRREEIELMRGFMRPRP*
Ga0066905_1020024421	3300005713	Tropical Forest Soil	MADDVVDLEAQWLKREFEKTYRRARALMDEVDANDYAAVCLFESDMEAFREQHGHEPAEPVEWLTWSRERRREEIELMRGVMRARP*
Ga0068861_1021437151	3300005719	Switchgrass Rhizosphere	MTDDDIHLEAQWLKRELEKTYPRARALMDEVHADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLDVMCKQA*
Ga0081455_1000460430	3300005937	Tabebuia Heterophylla Rhizosphere	MTDDEVDLEAQWLKRELEKTYPRAMALMDEVDAKDYEAVCLFESDVEAFCDQYGREPKEPLEWLAWRKNRRREEYELMLDVMRKHGLAGD*
Ga0081455_100383092	3300005937	Tabebuia Heterophylla Rhizosphere	MTDEAQWVKPELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGHEPKEPLEWLAWRKDRRREEHELLLDVMRKQV*
Ga0081455_1004390010	3300005937	Tabebuia Heterophylla Rhizosphere	MADDVVDLEAQWLKREFEKTYRRARALMDEVDANDYAAVCLFESDMEAFREQHGHEPAEPVEWLTWRRERRREEIELMRGVMRPRP*
Ga0081540_10395282	3300005983	Tabebuia Heterophylla Rhizosphere	MTDDEVDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDVEAFCEQHGREPAEPLEWLTWRRDRRREEIELMRGVMRKQGLGDQQ*
Ga0075417_100239684	3300006049	Populus Rhizosphere	MTDDELDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRRDRRREEIELMRGVTKFETRV*
Ga0075417_100357751	3300006049	Populus Rhizosphere	MTDDVVDLEGQWVKRELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHGLLLGVMRKQV*
Ga0075417_101178282	3300006049	Populus Rhizosphere	MTDDEVDLKAQWLKRELEKTYPRARALMDEVDAKDYEAVCLFESDIEAFCDQYGREPKEPLEWLAWRKNRRREEIELMRGVMRKHGLGDQQ*
Ga0075417_105662981	3300006049	Populus Rhizosphere	KRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLTWRKNRRREEYELMLDVMRKHGLAGG*
Ga0075427_100157163	3300006194	Populus Rhizosphere	AQWLKRELEKTYPRARALMDEVDAKDYEAVCLFESDIEAFCDQYGREPKEPLEWLAWRKNRRREEIELMRGVMRKHGLGDQQ*
Ga0075428_1000328098	3300006844	Populus Rhizosphere	MTDDEVDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLTWRKNRRREEYELMLDVMRKHGLAGG*
Ga0075428_1003342461	3300006844	Populus Rhizosphere	MTDDVVDLEGQWVKRELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHGLLLGIMRKQV*
Ga0075428_1006451503	3300006844	Populus Rhizosphere	DLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRRDRRREEIELMRGVTKFETRV*
Ga0075428_1006964452	3300006844	Populus Rhizosphere	MTDDVVDLEAQWVKRELENTYRRARALMDEVDANEYEAVCLFESDMEAFSNRYGREPMEPLEWLTWRRDRRREEIELMRGVTKVETRV*
Ga0075421_1005275051	3300006845	Populus Rhizosphere	MTDDVVDLEAQWVKRELENTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHELLLDGMRKQV*
Ga0075421_1018291101	3300006845	Populus Rhizosphere	EVDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLTWRKNRRREEYELMLDVMRKHGLAGG*
Ga0075431_1005561863	3300006847	Populus Rhizosphere	LDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRRDRRREEIELMRGVTKFETRV*
Ga0075431_1014608911	3300006847	Populus Rhizosphere	MTDDVVDLEAQWVKRELENTYRRARALMDEVDANEYEAVCLFESDMEAFSNRYGREPMEPLEWLTWRRDRRREEIELMRGVTK
Ga0075433_101553975	3300006852	Populus Rhizosphere	MTDDELDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLTWRKNRRREEYELMLDVMRKHGLAGG*
Ga0075433_117792042	3300006852	Populus Rhizosphere	LEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLDVMCKQA*
Ga0075434_1007926463	3300006871	Populus Rhizosphere	DDDIHLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLDVMCKQA*
Ga0075424_1027053571	3300006904	Populus Rhizosphere	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFCGQFGREPKEPHEWLAWRKDRRKEEHELVSE*
Ga0075436_1011588662	3300006914	Populus Rhizosphere	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLL
Ga0075419_113736091	3300006969	Populus Rhizosphere	LEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLTWRKNRRREEYELMLDVMRKHGLAGG*
Ga0075435_1002047461	3300007076	Populus Rhizosphere	MTDDEVDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRRDRRREEIELMRGV
Ga0075418_102627532	3300009100	Populus Rhizosphere	MTDDVVDLEAQWVKRELENTYRRARALMDEVDANEYEAVCLFESDMEASANRYGREPMEPLEWLTWRRDRRREEIELMRGVTKVETRV*
Ga0075418_117423841	3300009100	Populus Rhizosphere	QWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLTWRKNRRREEYELMLDVMRKHGLAGG*
Ga0105247_118287321	3300009101	Switchgrass Rhizosphere	MPPITDGRCPDRMSVFETGKKLMTDDELDLEAQWLKREFEKTYPRARALMDEVYADDYEAICLFESDVEAFSNQYGREPNEPLEWLAWRKDRRREEHELLL
Ga0114129_101803606	3300009147	Populus Rhizosphere	MTDEAQWVKRELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHELLLDVMRKQV*
Ga0114129_112463362	3300009147	Populus Rhizosphere	RELENTYRRARALMDEVDANEYEAVCLFESDMEAFSNRYGREPMEPLEWLTWRRDRRREEIELMRGVTKVETRV*
Ga0114129_122483941	3300009147	Populus Rhizosphere	MTDNVVDLEAQWVKRELENTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHELLLDGMRKQV*
Ga0075423_103961991	3300009162	Populus Rhizosphere	MTDDVVDLEGQWVKRELEKTYRRARALMDEVDANDYEAGCLCESDMEAFCDQYGREPKEPLDWLAWRKDRRR
Ga0105104_106872602	3300009168	Freshwater Sediment	MTDEIDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKNRRREEIELMRGVM*
Ga0126380_100099082	3300010043	Tropical Forest Soil	MADDVVDLEAQWLKREFEKTYRRARALMDEVDANDYAAVCLFESDMEAFREQHGHEPAEPVEWLTWSRERRREEIELMRGVMRPRP*
Ga0126380_103009524	3300010043	Tropical Forest Soil	DLEAQWLKRELEKTYPRARALMDDVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLPDVMRKQI*
Ga0126382_111857082	3300010047	Tropical Forest Soil	MTDDEAHLEAQWLKRELEKIYPRARALMDEVDANDYEAVCLFESDMEAFCDRYAREPKVPLEWLAWRKDRRREEHELLRDVMRK*
Ga0126382_114706582	3300010047	Tropical Forest Soil	MTDDEVDLETQWLKRELEKTYPRARALGDEVDSNDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRKNRCREEIELMRDVYEG*
Ga0126373_123048071	3300010048	Tropical Forest Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSSQYGREPKEPLEWLAWRKDRRREEHELLLDLMCKQV*
Ga0126370_109305431	3300010358	Tropical Forest Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSSQYGREPKEPLEWLAWRTDRRREEHELLLDVMYKLV*
Ga0126376_101057571	3300010359	Tropical Forest Soil	MTDDDLDLEAQWLKRELEKTYPRARALMDDVDADDYEAVCLFESDVEAFSNQYGREPREPLEWLAWRKDRRREEHELLL
Ga0126376_102109552	3300010359	Tropical Forest Soil	VVDFEDQWVKRELEKTYHRARALMDEVDADDYEAVCLFESDVEAFCDQYGREPKEPLEWLAWRKDRRREEHELLPDVMRKQI*
Ga0126372_106384872	3300010360	Tropical Forest Soil	MTDDELDLEAQWLKRELEKTYARARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDLMCKQV*
Ga0126377_105142452	3300010362	Tropical Forest Soil	MAHNVVDLEAQWLKREFEKTYRRARALMDEVDANDYEAVCLFESDMEAFCEQHGREPAEPVEWLRWRRDRRREEIELMRGFMRPRP*
Ga0126377_113671463	3300010362	Tropical Forest Soil	MADDVVDLEAQWLKREFEKTYRRARALMDEVDANDYAAVCLFESDMEAFREQHGHEPAEPVEWLTWSRERRREE
Ga0126377_125139901	3300010362	Tropical Forest Soil	VVDFEAQWVKRELEKTYHRARALMDEVDADDYEAVCLFESDVEAFCDQYGREPKEPLEWLAWRKDRRREEHELLPDIMRKQV*
Ga0126379_119364791	3300010366	Tropical Forest Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKDPLEWLAWRKDRRREEHELLLDVMCKQV*
Ga0105239_107716501	3300010375	Corn Rhizosphere	LPSGGSCPDRLSGFETGKKSMTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV*
Ga0126381_1013928041	3300010376	Tropical Forest Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLEIMYKLVYLASALVAVTTENGLPM
Ga0134121_122172011	3300010401	Terrestrial Soil	ELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQVYLAPALQRAGI*
Ga0162652_1000994431	3300012941	Soil	MTDDEVDLEVQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFSNQYGREPKGPLEWLTWRRDRRREEIELMRGVTKVETRV*
Ga0126375_102502723	3300012948	Tropical Forest Soil	MTDDEVDLETQWLKRELEKTYPRARALGDEVDSNDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRKNRRREEIELMRGVTKVETRVWLFLLAYTSVNPKFLG*
Ga0164303_109093601	3300012957	Soil	MTDDELDREVQWLKRELEITYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV*
Ga0164305_106503662	3300012989	Soil	MTDDDIHLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLL
Ga0163162_107215751	3300013306	Switchgrass Rhizosphere	GGSCPDRLSGFETGKKSMTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV*
Ga0163163_100280093	3300014325	Switchgrass Rhizosphere	MPPITDGRCPDRMSVFETGKKLMTDDELDLEAQWLKREFEKTYPRARALMDEVYADDYEAICLFESDVEAFSNQYGREPNEPLEWLAWRKDRRREEHELLLNEMCKQV*
Ga0132258_104577552	3300015371	Arabidopsis Rhizosphere	LPSGGSCPDRLSGFETGKKSMTDDELDREVQWLKRELEKTYPRARALMDEVYGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLDVACKQA*
Ga0132258_127488962	3300015371	Arabidopsis Rhizosphere	MSVSETGIKLMTDDELDLEAQWLKQEFEKTYPRARALMDEVYADDYEAICLFESDVEAFSNQYGREPNEPLEWLAWRKDRRREEHELLLNEMCKQV*
Ga0132258_132106761	3300015371	Arabidopsis Rhizosphere	MADNVVDLEAQWLKREFEKTYRRARALMDEVDAEDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKNRRREEIEFMRGVM*
Ga0132256_1000869323	3300015372	Arabidopsis Rhizosphere	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV*
Ga0132255_1016951142	3300015374	Arabidopsis Rhizosphere	MADNVVALEAQWLKREFEKTYRRARALMDEVDAEDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKNRRREEIEFMRGVM*
Ga0184611_11131163	3300018067	Groundwater Sediment	MTDDEIDLEAQWLKRELEKTYPRARALMDEVDAEDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKNRRREEIELMRGVMRKHGLGDQQ
Ga0184609_103415401	3300018076	Groundwater Sediment	MTDEVVDLEAQWVKRELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKNRRREE
Ga0126371_100728395	3300021560	Tropical Forest Soil	MTDDEVDLEAQWLKRELEKTYPRARALMDDVDADDYQAVCLFESDVEAFCGQYGREPKEPLEWLAWRKDRRREEHELLLDVMRKEKGLPLRQP
Ga0126371_136167581	3300021560	Tropical Forest Soil	MTDDDIHLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLDVMCKQV
Ga0222623_100614532	3300022694	Groundwater Sediment	MTDEVVDLEAQWVKRELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKNRRREEIELMRGVMRKHGLGDQQ
Ga0207710_101313602	3300025900	Switchgrass Rhizosphere	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLL
Ga0207644_118554381	3300025931	Switchgrass Rhizosphere	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLG
Ga0207678_111837131	3300026067	Corn Rhizosphere	VVDSEAQWVKRELEKTYHRARALMDEVDADDYEAVCLFESDVEAFCDQYGREPKEPLEWLAWRNDRRRE
Ga0209593_101329982	3300027743	Freshwater Sediment	TDDVEAQWVKRELEKTYRSARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKNRRREEIELMRGVM
Ga0209814_100615313	3300027873	Populus Rhizosphere	DLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRRDRRREEIELMRGVTKFETRV
Ga0209814_101416112	3300027873	Populus Rhizosphere	MTDDEVDLKAQWLKRELEKTYPRARALMDEVDAKDYEAVCLFESDIEAFCDQYGREPKEPLEWLAWRKNRRREEIELMRGVMRKHGLGDQQ
Ga0209814_101843032	3300027873	Populus Rhizosphere	MTDDVVDLEGQWVKRELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHGLLLGIMRKQV
Ga0209814_104291771	3300027873	Populus Rhizosphere	KRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLTWRKNRRREEYELMLDVMRKHGLAGG
Ga0209481_100215352	3300027880	Populus Rhizosphere	MTDDVVDLEGQWVKRELEKTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHGLLLGVMRKQV
Ga0209481_101355012	3300027880	Populus Rhizosphere	MTDDELDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRRDRRREEIELMRGVTKFETRV
Ga0209481_104061011	3300027880	Populus Rhizosphere	MTDDVVDLEAQWVKRELENTYRRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLAWRKDRRREEHELLLDGMRKQV
Ga0207428_100129718	3300027907	Populus Rhizosphere	MTDDEVDLEAQWLKRELEKTYPRARALMDEVDANDYEAVCLFESDMEAFCDQYGREPKEPLEWLTWRKNRRREEYELMLDVMRKHGLAGG
Ga0207428_103651652	3300027907	Populus Rhizosphere	ELEKTYPRARALMDEVDANDYEAVCLFESDMEAFSNQYGREPKEPLEWLTWRRDRRREEIELMRGVTKFETRV
Ga0307282_103194441	3300028784	Soil	MTDDEADLEAQWLKRELEQTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREERELLLDAICK
Ga0307312_100249595	3300028828	Soil	MTDDEADLEAQWLKRELEQTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREERELLLDAICKQV
Ga0307286_102418611	3300028876	Soil	MTDDEADLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRNDRRREERELLLDATCKQV
Ga0307498_100022254	3300031170	Soil	MTGDEADLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREERELLLDAICKQV
Ga0310888_102977531	3300031538	Soil	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLNEMCKQV
Ga0318516_101568062	3300031543	Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDVMCKQV
Ga0310887_101625622	3300031547	Soil	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV
Ga0310886_101572232	3300031562	Soil	LPSGGSCPDRLSGFETGKKSMTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV
Ga0318501_105037331	3300031736	Soil	RELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDVMCKQV
Ga0318521_105227351	3300031770	Soil	DLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDVMCKQV
Ga0318543_102295922	3300031777	Soil	LEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDVMCKQV
Ga0318565_103987541	3300031799	Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNHHGREPKEPLEWLAWRKDRRREEHELLLDVMCKQV
Ga0318551_107747921	3300031896	Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDGMCKQV
Ga0310884_108105522	3300031944	Soil	GSCPDRLSGFETGKKSMTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV
Ga0310899_106607341	3300032017	Soil	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFSNQYGREPKEPLEWLAWRKDRRREEHELLLGVICKQV
Ga0318558_101349163	3300032044	Soil	MTDDELDLEAQWLKRELEKTYPRARALMDEVDADDYEAVCLFESDVEAFSNQHGREPKEPLEWLAWRKDRRREEHELLLDVM
Ga0310895_100756792	3300032122	Soil	MTDDELDREVQWLKRELEKTYPRARALMDEVDGDDYEAVCLFESDVEAFFNQHGREPKEPLEWLAWRKDRRREEHELLLGVICKQV

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077485

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences