Metagenome Family F077578

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077578
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	79 residues
Representative Sequence	PKEYRERVEKFSRNYIWRKITGDITIEFLEAAVERMFTADEVSRVVDLAKLKELKHRIVHLFLYAKDTGRNHWN
Number of Associated Samples	66
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	12.04 %
% of genes near scaffold ends (potentially truncated)	76.92 %
% of genes from short scaffolds (< 2000 bps)	87.18 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.37

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (70.085 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (47.008 % of family members)
Environment Ontology (ENVO)	Unclassified (62.393 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.376 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.90% β-sheet: 0.00% Coil/Unstructured: 45.10%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.37
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.37
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00149	Metallophos	12.82
PF04226	Transgly_assoc	5.13
PF13676	TIR_2	2.56
PF00196	GerE	1.71
PF13924	Lipocalin_5	1.71
PF00072	Response_reg	0.85
PF03976	PPK2	0.85
PF14200	RicinB_lectin_2	0.85
PF07680	DoxA	0.85
PF07366	SnoaL	0.85
PF13358	DDE_3	0.85
PF13610	DDE_Tnp_IS240	0.85
PF04542	Sigma70_r2	0.85
PF00069	Pkinase	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG2261	Uncharacterized membrane protein YeaQ/YmgE, transglycosylase-associated protein family	General function prediction only [R]	5.13
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	3.42
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	0.85
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	0.85
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	0.85
COG2326	Polyphosphate kinase 2, PPK2 family	Energy production and conversion [C]	0.85
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
All Organisms	root	All Organisms	29.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
cellular organisms	root	All Organisms → cellular organisms	29.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	29.91 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	8.55 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	3.42 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	2.56 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	5.13 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.71 %
Blastocatellia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia	1.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.85 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	0.85 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	5.13 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.71 %
unclassified Blastocatellia	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia	1.71 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %
unclassified Planctomycetota	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota	0.85 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	0.85 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	0.85 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	4.27 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.71 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	0.85 %
Stappiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae	0.85 %
Planctomycetes bacterium RBG_16_55_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium RBG_16_55_9	0.85 %
Bifidobacteriales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales	0.85 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.27 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.71 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
Bifidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae	0.85 %
Pseudovibrio	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio	0.85 %
Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	0.85 %
Planctomycetes bacterium RBG_16_55_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium RBG_16_55_9	0.85 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.27 %
Verrucomicrobium	genus	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium	1.71 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
Pseudovibrio stylochi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio → Pseudovibrio stylochi	0.85 %
Bifidobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium	0.85 %
Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	0.85 %
Planctomycetes bacterium RBG_16_55_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium RBG_16_55_9	0.85 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.27 %
unclassified Verrucomicrobium	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium	1.71 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
unclassified Bifidobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → unclassified Bifidobacterium	0.85 %
Pseudovibrio stylochi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio → Pseudovibrio stylochi	0.85 %
Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	0.85 %
Planctomycetes bacterium RBG_16_55_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium RBG_16_55_9	0.85 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	70.09 %
Deltaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	4.27 %
Verrucomicrobium sp. GAS474	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474	1.71 %
Blastocatellia bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	1.71 %
Bifidobacterium sp. A11	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → unclassified Bifidobacterium → Bifidobacterium sp. A11	0.85 %
Pseudovibrio stylochi	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio → Pseudovibrio stylochi	0.85 %
Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	0.85 %
Planctomycetes bacterium RBG_16_55_9	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium RBG_16_55_9	0.85 %
Myxococcales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	0.85 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2170459005\|F1BAP7Q02F3PEH	Not Available	547	Open in IMG/M
2170459006\|GBPF9FW01AP9XL	Not Available	543	Open in IMG/M
3300000955\|JGI1027J12803_102306618	All Organisms → cellular organisms → Bacteria	897	Open in IMG/M
3300003219\|JGI26341J46601_10055776	All Organisms → cellular organisms → Bacteria	1225	Open in IMG/M
3300003219\|JGI26341J46601_10129284	Not Available	717	Open in IMG/M
3300004152\|Ga0062386_100652575	Not Available	862	Open in IMG/M
3300005332\|Ga0066388_102350822	Not Available	966	Open in IMG/M
3300005332\|Ga0066388_105386537	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	649	Open in IMG/M
3300005332\|Ga0066388_107677108	Not Available	541	Open in IMG/M
3300005467\|Ga0070706_101489780	Not Available	618	Open in IMG/M
3300005467\|Ga0070706_102009777	Not Available	523	Open in IMG/M
3300005518\|Ga0070699_101251274	Not Available	681	Open in IMG/M
3300005536\|Ga0070697_101205670	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	674	Open in IMG/M
3300005764\|Ga0066903_104366000	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	755	Open in IMG/M
3300005764\|Ga0066903_106036207	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium RIFOXYB2_FULL_38_6	634	Open in IMG/M
3300006175\|Ga0070712_101334881	Not Available	625	Open in IMG/M
3300010047\|Ga0126382_10397766	All Organisms → cellular organisms → Bacteria → Proteobacteria	1074	Open in IMG/M
3300010048\|Ga0126373_12044157	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474	635	Open in IMG/M
3300010398\|Ga0126383_13660224	Not Available	502	Open in IMG/M
3300012202\|Ga0137363_10774116	Not Available	814	Open in IMG/M
3300012205\|Ga0137362_11716402	Not Available	515	Open in IMG/M
3300012361\|Ga0137360_10162628	Not Available	1780	Open in IMG/M
3300012362\|Ga0137361_10762355	Not Available	882	Open in IMG/M
3300012362\|Ga0137361_11879737	Not Available	516	Open in IMG/M
3300012925\|Ga0137419_11432040	Not Available	584	Open in IMG/M
3300012930\|Ga0137407_10724108	Not Available	937	Open in IMG/M
3300015241\|Ga0137418_11025411	Not Available	594	Open in IMG/M
3300016270\|Ga0182036_10169026	Not Available	1575	Open in IMG/M
3300016270\|Ga0182036_10597015	All Organisms → cellular organisms → Bacteria	885	Open in IMG/M
3300016270\|Ga0182036_10725321	Not Available	805	Open in IMG/M
3300016270\|Ga0182036_11306750	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	605	Open in IMG/M
3300016294\|Ga0182041_10070548	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → Myxococcales	2455	Open in IMG/M
3300016294\|Ga0182041_10678531	Not Available	912	Open in IMG/M
3300016341\|Ga0182035_10584900	Not Available	963	Open in IMG/M
3300016341\|Ga0182035_11191417	All Organisms → cellular organisms → Bacteria	680	Open in IMG/M
3300016341\|Ga0182035_11405492	Not Available	626	Open in IMG/M
3300016357\|Ga0182032_10463594	All Organisms → cellular organisms → Bacteria	1036	Open in IMG/M
3300016357\|Ga0182032_11360180	Not Available	614	Open in IMG/M
3300016371\|Ga0182034_10235489	All Organisms → cellular organisms → Bacteria	1436	Open in IMG/M
3300016371\|Ga0182034_10915772	All Organisms → cellular organisms → Bacteria	755	Open in IMG/M
3300016371\|Ga0182034_11032844	Not Available	711	Open in IMG/M
3300016371\|Ga0182034_11860430	Not Available	531	Open in IMG/M
3300016387\|Ga0182040_10066615	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → unclassified Planctomycetota → Planctomycetes bacterium RBG_16_55_9	2315	Open in IMG/M
3300016387\|Ga0182040_10522654	Not Available	951	Open in IMG/M
3300016387\|Ga0182040_11359305	Not Available	601	Open in IMG/M
3300016404\|Ga0182037_10443987	Not Available	1077	Open in IMG/M
3300016404\|Ga0182037_10723805	Not Available	853	Open in IMG/M
3300016404\|Ga0182037_11679248	Not Available	566	Open in IMG/M
3300016404\|Ga0182037_12070067	Not Available	512	Open in IMG/M
3300016422\|Ga0182039_11273781	All Organisms → cellular organisms → Bacteria → Acidobacteria → Blastocatellia → unclassified Blastocatellia → Blastocatellia bacterium	665	Open in IMG/M
3300016445\|Ga0182038_10741182	Not Available	858	Open in IMG/M
3300016445\|Ga0182038_11084851	Not Available	711	Open in IMG/M
3300016445\|Ga0182038_12132731	Not Available	508	Open in IMG/M
3300020580\|Ga0210403_10720978	Not Available	798	Open in IMG/M
3300021171\|Ga0210405_10928169	Not Available	660	Open in IMG/M
3300021560\|Ga0126371_10978047	Not Available	988	Open in IMG/M
3300025910\|Ga0207684_11672840	Not Available	513	Open in IMG/M
3300026557\|Ga0179587_10287433	Not Available	1058	Open in IMG/M
3300026959\|Ga0207852_1026330	Not Available	598	Open in IMG/M
3300027010\|Ga0207839_1012716	All Organisms → cellular organisms → Bacteria	979	Open in IMG/M
3300027063\|Ga0207762_1064059	Not Available	532	Open in IMG/M
3300027680\|Ga0207826_1105229	Not Available	775	Open in IMG/M
3300027825\|Ga0209039_10199343	Not Available	814	Open in IMG/M
3300027889\|Ga0209380_10514335	All Organisms → cellular organisms → Bacteria → Acidobacteria	698	Open in IMG/M
3300028047\|Ga0209526_10052062	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2883	Open in IMG/M
3300031446\|Ga0170820_10742536	Not Available	762	Open in IMG/M
3300031668\|Ga0318542_10731835	Not Available	518	Open in IMG/M
3300031679\|Ga0318561_10642235	Not Available	584	Open in IMG/M
3300031719\|Ga0306917_10091703	All Organisms → cellular organisms → Bacteria	2161	Open in IMG/M
3300031719\|Ga0306917_10940158	Not Available	676	Open in IMG/M
3300031744\|Ga0306918_10674692	All Organisms → cellular organisms → Bacteria	809	Open in IMG/M
3300031744\|Ga0306918_10760530	Not Available	757	Open in IMG/M
3300031771\|Ga0318546_10724707	Not Available	700	Open in IMG/M
3300031771\|Ga0318546_10935649	Not Available	610	Open in IMG/M
3300031771\|Ga0318546_11023446	Not Available	581	Open in IMG/M
3300031833\|Ga0310917_10580068	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → Verrucomicrobium → unclassified Verrucomicrobium → Verrucomicrobium sp. GAS474	762	Open in IMG/M
3300031879\|Ga0306919_10950621	Not Available	658	Open in IMG/M
3300031879\|Ga0306919_11213684	Not Available	573	Open in IMG/M
3300031890\|Ga0306925_10606783	All Organisms → cellular organisms → Bacteria	1155	Open in IMG/M
3300031890\|Ga0306925_12055510	Not Available	537	Open in IMG/M
3300031890\|Ga0306925_12251731	Not Available	505	Open in IMG/M
3300031910\|Ga0306923_10760774	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Stappiaceae → Pseudovibrio → Pseudovibrio stylochi	1073	Open in IMG/M
3300031910\|Ga0306923_10785569	All Organisms → cellular organisms → Bacteria	1053	Open in IMG/M
3300031910\|Ga0306923_11216677	Not Available	804	Open in IMG/M
3300031912\|Ga0306921_10060500	Not Available	4321	Open in IMG/M
3300031912\|Ga0306921_11426971	Not Available	760	Open in IMG/M
3300031912\|Ga0306921_12624851	Not Available	520	Open in IMG/M
3300031941\|Ga0310912_11322124	Not Available	546	Open in IMG/M
3300031942\|Ga0310916_10743402	All Organisms → cellular organisms → Bacteria	829	Open in IMG/M
3300031945\|Ga0310913_10570265	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	803	Open in IMG/M
3300031947\|Ga0310909_10230649	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium	1544	Open in IMG/M
3300031947\|Ga0310909_10368424	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Bifidobacteriales → Bifidobacteriaceae → Bifidobacterium → unclassified Bifidobacterium → Bifidobacterium sp. A11	1206	Open in IMG/M
3300031947\|Ga0310909_11048469	All Organisms → cellular organisms → Bacteria	664	Open in IMG/M
3300031954\|Ga0306926_10128658	Not Available	3128	Open in IMG/M
3300031954\|Ga0306926_10447582	All Organisms → cellular organisms → Bacteria	1591	Open in IMG/M
3300031954\|Ga0306926_10629979	All Organisms → cellular organisms → Bacteria → Proteobacteria	1307	Open in IMG/M
3300032001\|Ga0306922_10289480	Not Available	1760	Open in IMG/M
3300032001\|Ga0306922_10496497	Not Available	1301	Open in IMG/M
3300032001\|Ga0306922_12377751	Not Available	506	Open in IMG/M
3300032035\|Ga0310911_10278187	Not Available	961	Open in IMG/M
3300032076\|Ga0306924_10385533	All Organisms → cellular organisms → Bacteria	1605	Open in IMG/M
3300032261\|Ga0306920_100909397	Not Available	1286	Open in IMG/M
3300032261\|Ga0306920_102120076	Not Available	784	Open in IMG/M
3300032261\|Ga0306920_102704922	Not Available	678	Open in IMG/M
3300032261\|Ga0306920_103698314	Not Available	561	Open in IMG/M
3300033289\|Ga0310914_10351198	All Organisms → cellular organisms → Bacteria	1333	Open in IMG/M
3300033289\|Ga0310914_10802416	Not Available	839	Open in IMG/M
3300033289\|Ga0310914_11032673	Not Available	722	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	96.58%
Aquatic	Environmental → Aquatic	3.42%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	96.58%
Freshwater	Environmental → Aquatic → Freshwater	3.42%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	81.20%
Loam	Environmental → Terrestrial → Soil → Loam	15.38%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	3.42%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	65.81%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.82%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	10.26%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	5.13%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	3.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	2.56%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	47.01%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	17.09%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	9.40%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	7.69%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	5.13%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	3.42%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.42%
Grass Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grass Soil	1.71%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	1.71%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	0.85%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	0.85%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.85%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2170459005	Grass soil microbial communities from Rothamsted Park, UK - July 2009 direct MP BIO1O1 lysis 0-21cm	Environmental	Open in IMG/M
2170459006	Grass soil microbial communities from Rothamsted Park, UK - March 2009 indirect in plug lysis (for fosmid construction) 0-10cm	Environmental	Open in IMG/M
3300000955	Soil microbial communities from Great Prairies - Iowa, Native Prairie soil	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005467	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005536	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300006175	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012925	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300015241	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_2_16fungal (Hybrid Assembly)	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016294	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016357	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000	Environmental	Open in IMG/M
3300016371	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172	Environmental	Open in IMG/M
3300016387	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176	Environmental	Open in IMG/M
3300016404	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300016445	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021560	Tropical forest soil microbial communities from Panama - MetaG Plot_4	Environmental	Open in IMG/M
3300025910	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes)	Environmental	Open in IMG/M
3300026557	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal	Environmental	Open in IMG/M
3300026959	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 3 (SPAdes)	Environmental	Open in IMG/M
3300027010	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 64 (SPAdes)	Environmental	Open in IMG/M
3300027063	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 37 (SPAdes)	Environmental	Open in IMG/M
3300027680	Tropical forest soil microbial communities from Luquillo Experimental Forest, Puerto Rico - Sample 80 (SPAdes)	Environmental	Open in IMG/M
3300027825	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027889	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 6 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031668	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.168b4f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031744	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H (v2)	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031833	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178	Environmental	Open in IMG/M
3300031879	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031910	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031941	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080	Environmental	Open in IMG/M
3300031942	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF176	Environmental	Open in IMG/M
3300031945	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX082	Environmental	Open in IMG/M
3300031947	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.T000H	Environmental	Open in IMG/M
3300031954	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178 (v2)	Environmental	Open in IMG/M
3300032001	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032261	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170 (v2)	Environmental	Open in IMG/M
3300033289	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
E41_08347220	2170459005	Grass Soil	LKFDPITGKISEQYPDAYPKDYPERVEKFCRNYIWRKITGDVTVEFLQAAVDRMFSADEVTCVVDLERLERLKHQIVGLFFTR
L01_06063460	2170459006	Grass Soil	SILVEVDPITGKISEQYPDAHPKDYPERVEKFCRNYIWRKITGDVTVKFLESAVDRMFSADEVTSVVDLERLERLKRRIVGLFFNRPSEFVKV
JGI1027J12803_1023066181	3300000955	Soil	ERVEKFSRNYIWRKITGDINMEFLEAAVERMFTADEVSSVVDLTKLKELKHRIVHLFLYANDSGRNYWG*
JGI12627J18819_103983301	3300001867	Forest Soil	LGDISIEFLEAAVERMFNAGEGSRVADLTKVKELRHRIVHLFPYANDSGRNHWD*
JGI26341J46601_100557761	3300003219	Bog Forest Soil	QYPDAYPKDYPERVEKFCRNYIWRKITGDVTVEFLEAAVDRMFSADEVTRAVDLERLKRLKHQIVSLFRTR*
JGI26341J46601_101292842	3300003219	Bog Forest Soil	PKDYPERVEKFCRNLLWRKITGDITVEFLEAAVDRMFSADEVTCVVDLERLKRLKHQIVGLFFTR*
Ga0062386_1006525751	3300004152	Bog Forest Soil	DPITGKISEQYPDAYPKDYPERVEKFCRNYIWRKITGDITAEFLEAAVDRMFTADEVTCVVDLARLKRLKHQIVGLFFTR*
Ga0066388_1023508222	3300005332	Tropical Forest Soil	ERVENFSRNYIWRKIVGDITVEFLEAAEERMFTAAEVSSVVNLAKLKELKHRIVHLFLYANDTGRNQYGSSDTL*
Ga0066388_1053865371	3300005332	Tropical Forest Soil	KEYRERVEKFSRNYIWRRLTGDVTIEFLEAAAERMFTADEVSSVVNIAKLKELKHRIVHLFLYANDTGRNHYGSFDTL*
Ga0066388_1076771081	3300005332	Tropical Forest Soil	CRRSSGASDPRRVLGTGRPPAGKESERYPYAYPKEYQERVENFSRNYIWRKITGDITIEFLEAAVERMFTADEVSGAVDLGKLKELKHRIVHLFLYANATDRNRWN*
Ga0070706_1014897801	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	ERVERFCRNYIWRKITGDITAEFLEAAVDRMFSADEVICVVDLERLKRLKRQIVSLFFAR
Ga0070706_1020097772	3300005467	Corn, Switchgrass And Miscanthus Rhizosphere	RERVEKFSRNYIWRKITGDITIEFLEAAVERMFNADEVSSVVDLAKLKVLKHRMVHLFLYADDTGRNHYGSSDTL*
Ga0070699_1012512741	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	PKEYRERVEKFSRNYIWRKITGDITIEFLEAAVERMFTADEVSRVVDLAKLKELKHRIVHLFLYAKDTGRNHWN*
Ga0070697_1012056701	3300005536	Corn, Switchgrass And Miscanthus Rhizosphere	FSRNYIWRKITGDITIEFLEAAVERMFTADEVSSVVDLAKLKELKHRMVHLFLYADDTGRNHYGSSDTL*
Ga0066903_1043660001	3300005764	Tropical Forest Soil	SRNYIWRKIMGDITVEFLEAAEERMFTAAEVSSVVNLAKLKEPKHRIVHLFLYANDTGRNQYGSSDTL*
Ga0066903_1060362071	3300005764	Tropical Forest Soil	VLKRPISLLIEVDPISGKESEQYQDDYPKEYRERVEKFSRNYILRRITGNITIEFLEAVVERMFTADEVSSVVDLARLKELKHRIVHLFLYARGTGRNHWN*
Ga0070712_1013348812	3300006175	Corn, Switchgrass And Miscanthus Rhizosphere	VELDPITGKVSEEYPDAYPKDYPERAERFCCNLIWRKVTGKITALFLEAVVDRMFTADEVTSVVDPARLKHLKHQIVSLFLAR*
Ga0126382_103977662	3300010047	Tropical Forest Soil	NYIWRKITGDITIEFLEAAVERMFNADEVSGVVDLGKLKQLKHRIVHLFLYARDTGRNHWN*
Ga0126373_120441571	3300010048	Tropical Forest Soil	ENFSRNFIWRRITGDITIEFLEAAVERMFTADEVSSVVDLAKLKDLKHRIVELFLYARETGRNRWN*
Ga0126383_136602241	3300010398	Tropical Forest Soil	NFSRNYIWRRITGDITMEFLEAAVERMFTADEVSGVVDLAKLKELKHRIVHLFLYARDTGRNHWN*
Ga0137363_107741161	3300012202	Vadose Zone Soil	LLLIEVDPISGKESEQYPDAYPKEYRERVEKFSRNYIWRKMTGDITIEFIEAAVERMFNADEVSSVVDIAKLKELKHRIVHLFLYANDTGRNHWD*
Ga0137362_102038151	3300012205	Vadose Zone Soil	RKITGDITIEFLEAAVERMFNADEVSSVVDIAKLKELKHRIVHVFLYANDTGRNHWD*
Ga0137362_117164022	3300012205	Vadose Zone Soil	RKITGDITIEFLEAAVERMFTADEVSSVVDLAKLKELKHRIFHLFLYANDSGRNQAAIS*
Ga0137360_101626283	3300012361	Vadose Zone Soil	LFEVDPISGKESEQYPDAYPKEYRERVEKFSRNYIWRKMTGDITIEFIEAAVERMFTADEVSSVVDLAKLRELKHRIVHLFLYANDTGRNHWN*
Ga0137361_107623552	3300012362	Vadose Zone Soil	VEVDPIAGKISEEYPDAYPKDYPERVEKFCRNYIWRKITGDVTAEFLEAAVDRMFSADEVTCVVDLERLKRLKDHIVGLFFTR*
Ga0137361_118797371	3300012362	Vadose Zone Soil	VEVDPIAGKISEEYPDAYPKDYPERVEKFCRNYIWRKITGDITVAFLEAAVDRMFSADEVTCVVDLERLKRLKHQIVGLFFTR*
Ga0137359_109133292	3300012923	Vadose Zone Soil	MITGEVTIEFLEAAVDRMFNADEVSSVVDLCKLRELKHRIVHHFLCSYDAGRNREN*
Ga0137419_114320401	3300012925	Vadose Zone Soil	ISGKEFEQCSGADPKEYRERVEKFSRNYIWRKITGDITIEFLEAAVERMFSADEVTCVVDLERLKRLKHQIVGLFFTR*
Ga0137407_107241081	3300012930	Vadose Zone Soil	VDPISGKESEQYPDVYPKEYWERVENFSRNYIWRKMTGDITIEFIEAAVERMFTADEVSSVVDLAKLKELKHRIVHLFLYAN
Ga0137418_110254112	3300015241	Vadose Zone Soil	EVDPIAGKISEQYPDAYPRDYPERVEKFCRNYIWRKITGDVTVEFLEAAVDRMFSADEVTCVVDLERLKRLKHQIVGLFFTR*
Ga0182036_101690261	3300016270	Soil	KEYRERVENFSRNFIWQKMTGHITIEFLEAAVDRMFTADEVSSVVDLPSLKELKHRIVQLFLYARDTGRNRWN
Ga0182036_105970151	3300016270	Soil	VEIFSRNYIWRRIAGDITIEFIEAAVERMFTADEVSSVVDLGKLKQLKHRIVHLFLYARDTGRNHWN
Ga0182036_107253211	3300016270	Soil	ESEQYPDAYPKEYRERVEKFSRNYIWRKITGDITIDFLEAAVERMFTADEVSGVVDLGKLKELKHRIVHLFLYANNTGRDHWN
Ga0182036_113067501	3300016270	Soil	ERVENFSRNFIWQKMTGHITIEFLEAAVERMFNADEVSSVVDLAKLKELKHRIVDLFLYAKETGRNQWN
Ga0182041_100705481	3300016294	Soil	DPISGKESEQYPDAYPKEYRERVENFSRNFIWRRITGDITIEFLEAAVERMFAADEVSGVVDLAKLKELKHRIVHLFLYSYDTGRNHWN
Ga0182041_106785313	3300016294	Soil	LIEVDPISGKESKQYPDAYPKQYRERVENFSRNYIWRKITGDVTIEFLEAAVERMFTADEVSGGVLDLAKLKGLKHRIVNLFLYSYDAGRNHWNG
Ga0182035_103470563	3300016341	Soil	TGLITIEFLEVVVDRMFTADEVSSVVDLGKLKQLKHRIVHLFLYARDTGRNHWN
Ga0182035_105849001	3300016341	Soil	ENFSRNYIWRRITGDITMEFLEAAVERMFTADEVSSVVDLAKLKELKHRIVHLFLYARDTGRNRWN
Ga0182035_111914171	3300016341	Soil	KEYRERVERFSRNYIWRRITGDITIEFLEAAVERMFTADEVSTVVDRGKLKELKHRIVDLFLYAKETGRNQWN
Ga0182035_114054921	3300016341	Soil	YAYPKEYRERVENFSRNFIWQKMTGLITIEFLEVVVDRMFTADEVSSVVDLAKLKELKHRIVQLFLYARDTGRNHWN
Ga0182032_104635941	3300016357	Soil	NYIWRRITGDITIEFLEAAVERMFTADEVSSVVDLAKLKELKHRIVDLFLYAKETGRNQW
Ga0182032_113601802	3300016357	Soil	VEKFSRNFIWRRITGEITIEFLEAAVERMFTADEVSGAVDLGKLKQLKHWIVHLFLYATDTGRNHWNS
Ga0182034_102354891	3300016371	Soil	LSLVEKFSRNYICRRLTGDVTIEFLEAAVERMFTADEVSSVVDLAKLKELKHRIVHLFLYANGTGRNHYGSSDTL
Ga0182034_109157722	3300016371	Soil	EVDPISGKESVQHPDAYPKEYRKRVENFSRNYIWRRLTGDITIDFLEAAVERMFTADEVTGVVDLAKLRELKHRIVHLFLYAKETGRNRWN
Ga0182034_110328442	3300016371	Soil	VEIFSRNYIWRKITGDITIEFLEAAVDRLFNADEVSSVVDLGKLRELKHRIVHLFL
Ga0182034_118604302	3300016371	Soil	SEQYPDAYPKEYRERAENFSRNYIWRKMTGDITIEFLEAGVDRMFTADEVSRVVDLAKLKELKHGIVHLFLYAKETGRNHFN
Ga0182040_100666151	3300016387	Soil	RERVENFSRNYIWRRITGDITMEFLEAAVERMFTADEVSSVVDLAKLKELKHRIVHLFLYARDTGRNRWN
Ga0182040_105226541	3300016387	Soil	VEKFSRNFIWRRITGEITIEFLEAAVERMFTAGEVSSVVDLAKLKELKHRILNLFLYSYDAGRNHWN
Ga0182040_113593052	3300016387	Soil	EVPISGKESEQYQDDYPKEYRERVEKFSRNYIWRRITGDITIEFLEAAVERMFTADEVSSVVDLAKLKALKDRIVHLFLYDR
Ga0182037_104439872	3300016404	Soil	GKESEQYPDAYPKEYRERVEKFSRNYIWRKITGDITIDFLEAAVERMFTADEVSGVVDLGKLKELKHRIVHLFLYANNTGRDHWN
Ga0182037_107238051	3300016404	Soil	AYPKEYRARVEKFSRNYIWRRITGDVTIEFLEAAVERMFTADEVSGVVDLAKLKELKHRIVHLFLYS
Ga0182037_116792481	3300016404	Soil	PISGNESEQYPYAYPKEYRERVENFSRNFIWQKMTGHITIEFLEAAVERMFNADEVSSVVDLAKLKELKHRIVDLFLYAKETGRNQWN
Ga0182037_120700672	3300016404	Soil	ENFSRNFIWRKMTGDITIDFLEAAVERMFTADEVSSVVDLAKLKELKHRIVHLFLYSYDTGRNHWN
Ga0182039_112737811	3300016422	Soil	KVDPISGNESEQYPYAYPKEYRERVENFSRNFIWQKMTGHITIEFLEAAVERMFNADEVSSVVDLAKLKELKHRIVDLFLYAKETGRNQWN
Ga0182038_107411821	3300016445	Soil	EVDPISGKESEQYPYAYPKEYRERVENFSRNYIWRKITGDITIEFIEAAVERMFTADEVSTVVDLAKLKKLKHRIVHLFLYARGTGRNHWN
Ga0182038_110848511	3300016445	Soil	FSRNFIWQKMTGHITIEFLEAAVDRMFTADEVSSVVDLPSLKELKHRIVQLFLYARDTGRNHWN
Ga0182038_121327311	3300016445	Soil	LRRLSDALLRLGDVVDPISGREAEQYPDAYPKEYRERVEKFARNYIWRKITGDITIEFLEAAVERMFTAEEVSGVVDRAKLKELKHRIVHLFLYANDTGRNRWN
Ga0210403_107209782	3300020580	Soil	VKIDPISAKESEEYQHIFSKDYPERVEKFSGNYIWRKITGDITAEFLEALVDRMFTADEVTRVVDLEKLRRLKHEIVSLFLKS
Ga0210405_109281693	3300021171	Soil	FCGNYIWRKITGDITAEFLEALVDRMFTADEVSRVVDLGKLRRLKNEIVSLFLQR
Ga0126371_109780472	3300021560	Tropical Forest Soil	EVLFLLIDVDPISGKQSVQHPDVYPKEYRERVENFSRNFIWRRITGDITIQFLEAAVERMFTADEVSSVVDLAKLKELKHRIVHLFLYSYDAGRNHWN
Ga0207684_116728401	3300025910	Corn, Switchgrass And Miscanthus Rhizosphere	VDPITGKRSEQYPDAYPKDYPERVERFCRNYIWRKITGDITAEFLEAAVDRMFSADEVICVVDLERLKRLKRQIVSLFFAR
Ga0179587_102874331	3300026557	Vadose Zone Soil	LLLIEVDPISGKESEQYPDAYPKEYRERVEKFSRNYIWRKMTGEITIEFLEAAVERMFSADEVSSVVDLAKLKELKHRIVHLFLYA
Ga0207852_10263301	3300026959	Tropical Forest Soil	LGKEFEQYPDAYPKEYWERVENFSRNYIWRKLTGDMTIEFLEAAVERMFTADEVSGGVVDLAKLKELKHRIVHLFLYS
Ga0207839_10127161	3300027010	Tropical Forest Soil	DPILGKEFEQYPDAYPKEYWERVENFSRNYIWRKLTGDMTIEFLEAAVERMFTADEVSGGVVDLAKLKELKHRIVQLFLYARDTGRNHWN
Ga0207762_10640592	3300027063	Tropical Forest Soil	LGKEFEQYPDAYPKEYWERVENFSRNYIWRKLTGDMTIEFLEAAVERMFTADEVSGGVVDLAKLKELKHRVVHLFLYANNTGRNHWN
Ga0207826_11052291	3300027680	Tropical Forest Soil	LGKEFEQYPDAYPKEYWERVENFSRNYIWRKLTGDMTIEFLEAAVERMFTADEVSGGVVDLAKLKELKHRVVHLFLYARDTGRNHWN
Ga0209039_101993431	3300027825	Bog Forest Soil	YPHIFPKDYPERVEKFCGKYIWRKITGDITAEFLEALVDRMFTADEVTRVVDLGKLRRLKHEIVSLFLQR
Ga0209380_105143352	3300027889	Soil	ISGKESISGKESEEFPHIYPKDYPERVEKFSGNYIWRKITADITAEFLEALVDRMFTADEVTRVVDLGKLRRLKHEIVSLFLKL
Ga0209526_100520621	3300028047	Forest Soil	LSILVEVDPIAGKESEEYPDAYPKEYPERVEKFCRNYIWRKITGDITVEFLEAAVDRMFSADEVTCVVDLARLKRLKHQIVSLFLRR
Ga0170820_107425361	3300031446	Forest Soil	LGLVEIDPISGKKPEEYPYFYSKDYPERVEKFCTKYIWRKITGDITAEFLEALVDRMFTADEVSRVVDLGKLRRLKREIVSLFLYDTGRNHRT
Ga0318542_106264472	3300031668	Soil	LVYFAPTGEITIEFIEAAVERMFTADEVSGVVDLAKLKELKHRIVNLFLYSYDAGRNHKN
Ga0318542_107318351	3300031668	Soil	NFSRNFIWQKMTGHITIEFLEAAVDRMFTADEVSSVVDLPSLKELKHRIVQLFLYARDTGRNRWN
Ga0318561_106422352	3300031679	Soil	EYPDTYAKEYRERVENFSRNYIWRKITGDITIEFLEAAVERMFTADEVSGVVDLGKLKELKHRIVQLFLYSYDAGRNRWN
Ga0306917_100917031	3300031719	Soil	LPRAGAIISLIEVDPISGKEAEQYPDAYPKEYREKVEKFSKNYIWRRITGDITIEFLESAVERMFTADEVCGVVDPAKLKELKHRIVQLFLYAIKIGLNRWN
Ga0306917_109401581	3300031719	Soil	LNTGLRGLCEGGEVDPILGKEFEQYPDAYPKEYRERVENFSRNYIWRRITGAISIEFLEAAVERMFTADEVSGVVDLAKLKELKHRIVELFLYARETGRNRWN
Ga0306918_106746921	3300031744	Soil	EYRERVENFSRNYIWRRITGAISIEFLEAAVERMFTADEVSGVVDLAKLKELKHRIVELFLYARETGRNRWN
Ga0306918_107605301	3300031744	Soil	KEYQERVEKFSRNYIWRKITGDITIEFLEAAVERMFTADEVCGVVDPAKLKELKHRIVHLFLYARDTGRNRWN
Ga0318546_107247072	3300031771	Soil	LLVKIDPISGKESEQYPDAYPKEYRERVEKLSRNYIWRKITGDITIDFLEAAVERMFTADEVSGVVDLGKLKELKHRIVHLFLYANNTGRDHWN
Ga0318546_109356491	3300031771	Soil	VLFLLTEVDPISRKESEQYPDAYPKEYRERVEKFSRNFIWRRLTGEITIEFLEAAVERMFTADEVSSVVDLAKLKELKHRILNLFLYSYDAGRNHWN
Ga0318546_110234461	3300031771	Soil	YSDAYPKEYQERVEKFSRNYIWRKITGDITIEFLEAAVERMFTADEVCGVADLAKLKELKHRIVHLFLYARDTGRNRWN
Ga0310917_105800681	3300031833	Soil	HPDAYPKEYRKRVENFSRNFIWRRITGDITIEFLEAAVERMFAADEVSGVVDLAKLKELKHRIVELFLYARETGRNRWN
Ga0306919_109506211	3300031879	Soil	YPKEYRKRVENFSRNFIWRRITGDITIEFLEAAVERMFAADEVSGVVDLAKLKELKHRIVHLFLYSYDTGRNHWN
Ga0306919_112136842	3300031879	Soil	KEYRERVENFSRNFIWQKMTGHITIEFLEAAVDRMFTADEVSSVVDLAKLKELKHRIVHLFLYADDTGRNHWN
Ga0306925_106067832	3300031890	Soil	YPKEYRKRVENFSRNYIWRRITGDITIEFIEAAVERMFTADEVSSVVDLGKLKQLKHRIVHLFLYARDTGRNHWN
Ga0306925_118436602	3300031890	Soil	ITIEFLEAAVERMFNADEVSSVVDLAKLKELKHRIVDLFLYAKETGRNQWN
Ga0306925_120555101	3300031890	Soil	MEIDPISGKESEQYPDAYPKEYRERVEIFSRNFIWRRLTGDVTIEFLEAAVERMFTADEVSGVVDLAKLKELKHRIVHLFLYARDTGRNHWN
Ga0306925_122517312	3300031890	Soil	ESEQYPDAYPKKYRERVENFSRNYIWRKMTGDITIEFLEAAVERMFTADEVCSVVDLAKLKELKRRIVRLFLYANNTGRNHYGSSDTL
Ga0306923_107607742	3300031910	Soil	RKVLSLLIELDPISGNESEQYPDSYPKEYRERVEKFSRNYIWRRITGDVTIEFLEAAVERMFTADEVSGVVDLAKLKELKHRIVHLFLYS
Ga0306923_107855692	3300031910	Soil	VEIFSRNYIWRKITGDITIEFLEAAVDRLFNADEVSSVVDLGKLRELKHRIVHLFLYTNGTGRNHWN
Ga0306923_112166772	3300031910	Soil	LFLLIEVDPISGKEFEQYPDFYPKEYRERVEKFSRNYICRRITGDITIDFLEAAVERMFTADEVCGVVDPAKLKELKHRIVHLFLYSYDAGRRQRYPAR
Ga0306921_100605001	3300031912	Soil	VLFLLVEVDPISGNEANQYADDYPKEYRERVENFSRNYIWRRITGDITMEFLEAAVERMFTADEVSSVVDLAKLKELKHRIVHLFLYARDTGRNRWN
Ga0306921_114269711	3300031912	Soil	EIDPVSGKESEEYPDSYPKEYRERVEIFSRNYIWRRITGDITIGFLEAAVERMFTADEVSGVVDLAKLRELKHRIVQLFLYARDAGRNLWN
Ga0306921_126248511	3300031912	Soil	EYRKRVENFSRNFIWRRITGDITIEFLEAAVERMFTADEVSGVVDLAKLKELKHRIVELFLYARETGRNRWN
Ga0306921_126520881	3300031912	Soil	GHITIEFLEAAVDRMFTADEVSSVVDLAKLKELKHRIVHLFLYADDTGRNHWN
Ga0310912_113221241	3300031941	Soil	SLLIELDPISGKASEEYPDSYPKEYRERVEKFSRNYIWRRITGDITIEFLEAVVEWMFTADEVSSVVDLARLKELKHRIVHLFLYANDRLGRNH
Ga0310916_107434022	3300031942	Soil	DPISGKESEQYPDAYPKEYRERVENFSRNYIWRRITGAISIEFLEAAVERMFTADEVSGVVDLAKLKELKHRIVELFLYARETGRNRWN
Ga0310913_105702652	3300031945	Soil	RERVENFSRNYIWRKMTGDITIEFLEAAVERMFTADEVCSVVDLAKLKELKRRIVRLFLYANNTGRNHYGSSDTL
Ga0310909_102306491	3300031947	Soil	KMTGDITIEFLEAAVERMFTADEVCSVVDLAKLKELKRRIVRLFLYANNTGRNHYGSSDT
Ga0310909_103684242	3300031947	Soil	LPRAGAIISLIEVDPISGKEAEQYPDAYPKEYREKVEKFSKNYIWRRITGDITIVFLESAVERMFTADEVCGVVDPAKLKELKHRIVQLFLYAIKIGLNRWN
Ga0310909_110484691	3300031947	Soil	RERVEKFSRNFIWRRITGEITIEFLEAAVERMFTADEVSGAVDLGKLKQLKHWIVHLFLYATDTGRNHWNS
Ga0310909_111551332	3300031947	Soil	MGDITVEFLEAAEERMFTAAEVSSVVNLAKLKELKHRIVHLFLYANDTGISTDLLI
Ga0306926_101286587	3300031954	Soil	DHVPTLNGDATPEHIWMTGDITIEFIEAAVERMVTADEVSGVVDLAKLRELKHRIVHLFLYGKDTGRNQWN
Ga0306926_104475821	3300031954	Soil	LLLHFGTAEHLNTGLRGLCEGGEVDPILGKEFEQYPDAYPKEYRERVENFSRNFIWRKMIGDITIDFLEAAVERMFTADEVSSVVDFAKLKELKHRIVHLFLYARGTGRNHWN
Ga0306926_106299791	3300031954	Soil	PKEYRERVEKFSRNFIWRRLTGEITIEFLEAAVERMFTADEVSSVVDLAKLKELKHRILNLFLYSYDAGRNHWN
Ga0306922_102894801	3300032001	Soil	VRHPDAYPKEYRKRVENFSRNFIWRRITGDITIEFLEAAVERMFTADEVSSVVDLAKLKELKHRIVHLFLYARETGRNRWN
Ga0306922_104964971	3300032001	Soil	DAYPKEYRERVENFSRNYIWRRITGDITIEFLEAAVERMFTADEVSSVVDLAKLRELKHRIVELFLYSYDAGRNHWN
Ga0306922_123777512	3300032001	Soil	SEQYPDDYPKKYRERVEIFSRNYIWRKITGDITIEFLEAAVDRLFNADEVSSVVDLGKLRELKHRIVHLFLYTNGTGRNHWN
Ga0310911_102781872	3300032035	Soil	YEQYPYAYPKEYRERVENFSRNFIWRRITGDITIDFLEAAVERMFTADEVSGVVDLAKLKELKHRIVHLFLYARDTGRNHWN
Ga0306924_103855332	3300032076	Soil	LGKEFEQYPDAYPKEYRERVENFSRNFIWRKMIGDITIDFLEAAVERMFTADEVSSVVDFAKLKELKHRIVHLFLYARGTGRNHWN
Ga0307472_1000517681	3300032205	Hardwood Forest Soil	GQPRWKITGDITIEFLEAAVERMFNADEVSSVVDLAKLKELKHRIVDLFLYAKETGRNQW
Ga0306920_1009093972	3300032261	Soil	MESVQHPDAYPKEYRKRVENFSRNYIWRRITGDITIEFIEAAVERMFTADEVSSVVDLGKLKQLKHRIVHLFLYARDTGRNHWN
Ga0306920_1021200764	3300032261	Soil	QERVEKFSRNYIWRKITGDITIEFLEAAVERMFTADEVCGVADLAKLKELKHRIVHLFLYARDTGRNRWN
Ga0306920_1027049221	3300032261	Soil	HFGTAEHLNTGLRGLCEGGEVDPILGKEFEQYPDAYPKEYRERVENFSRNFIWRKMIGDITIDFLEAAVERMFTADEVSSVVDFAKLKELKHRIVHLFLYARGTGRNHWN
Ga0306920_1036983141	3300032261	Soil	SGKEADQYPDAYPKQYQERVENFSRNFIWRKMTGDITIDFLEAAVERMFTADEVSSVVDLAKLKELKHRIVNLFLYSYDTGRNHWN
Ga0310914_103511981	3300033289	Soil	FLLTEVDPISRKESEQYPDAYPKEYRERVEKFSRNFIWRRLTGEITIEFLEAAVERMFTADEVSSVVDLAKLKELKHRILNLFLYSYDAGRNHWN
Ga0310914_108024161	3300033289	Soil	VDPISGNESEQYPYAYPKEYRERVENFSRNFIWQKMTGHITIEFLEAAVERMFNADEVSSVVDLAKLKELKHRIVDLFLYAKETGRNQWN
Ga0310914_110326732	3300033289	Soil	KIDPISGKEVNRYPDAYPKEYRERVENFSRNYIWRRITGDITIDFLEAAVERMFTADEVSGVVDLAKLKELKHRIVHLFLYARDTGRNHWN

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077578

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences