Metagenome / Metatranscriptome Family F077714

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077714
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	41 residues
Representative Sequence	MRSNGYISPLQTCWIEGRACPRRYLSVLPSHVRANLFGSD
Number of Associated Samples	98
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	25.64 %
% of genes near scaffold ends (potentially truncated)	44.44 %
% of genes from short scaffolds (< 2000 bps)	58.12 %
Associated GOLD sequencing projects	92
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.31

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (72.650 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil (9.402 % of family members)
Environment Ontology (ENVO)	Unclassified (35.043 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (47.863 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 29.41% β-sheet: 0.00% Coil/Unstructured: 70.59%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.31
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.31
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF00202	Aminotran_3	42.74
PF04138	GtrA	17.95
PF01066	CDP-OH_P_transf	7.69
PF03473	MOSC	4.27
PF00857	Isochorismatase	3.42
PF12867	DinB_2	3.42
PF02744	GalP_UDP_tr_C	2.56
PF04542	Sigma70_r2	1.71
PF03023	MurJ	1.71
PF01436	NHL	0.85
PF08281	Sigma70_r4_2	0.85
PF07681	DoxX	0.85
PF00156	Pribosyltran	0.85
PF00012	HSP70	0.85
PF07726	AAA_3	0.85
PF08240	ADH_N	0.85
PF00510	COX3	0.85
PF01592	NifU_N	0.85
PF00326	Peptidase_S9	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0558	Phosphatidylglycerophosphate synthase	Lipid transport and metabolism [I]	7.69
COG1183	Phosphatidylserine synthase	Lipid transport and metabolism [I]	7.69
COG5050	sn-1,2-diacylglycerol ethanolamine- and cholinephosphotranferases	Lipid transport and metabolism [I]	7.69
COG1335	Nicotinamidase-related amidase	Coenzyme transport and metabolism [H]	3.42
COG1535	Isochorismate hydrolase	Secondary metabolites biosynthesis, transport and catabolism [Q]	3.42
COG0534	Na+-driven multidrug efflux pump, DinF/NorM/MATE family	Defense mechanisms [V]	1.71
COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	Transcription [K]	1.71
COG0728	Lipid II flippase MurJ/MviN (peptidoglycan biosynthesis)	Cell wall/membrane/envelope biogenesis [M]	1.71
COG1191	DNA-directed RNA polymerase specialized sigma subunit	Transcription [K]	1.71
COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	Transcription [K]	1.71
COG2244	Membrane protein involved in the export of O-antigen and teichoic acid	Cell wall/membrane/envelope biogenesis [M]	1.71
COG4941	Predicted RNA polymerase sigma factor, contains C-terminal TPR domain	Transcription [K]	1.71
COG0443	Molecular chaperone DnaK (HSP70)	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG0822	Fe-S cluster assembly scaffold protein IscU, NifU family	Posttranslational modification, protein turnover, chaperones [O]	0.85
COG1845	Heme/copper-type cytochrome/quinol oxidase, subunit 3	Energy production and conversion [C]	0.85
COG2259	Uncharacterized membrane protein YphA, DoxX/SURF4 family	Function unknown [S]	0.85
COG4270	Uncharacterized membrane protein	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	72.65 %
Unclassified	root	N/A	27.35 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	72.65 %
Unclassified	root	N/A	27.35 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	72.65 %
Unclassified	root	N/A	27.35 %

Name	Rank	Taxonomy	Distribution
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	50.43 %
Unclassified	root	N/A	27.35 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1.71 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	42.74 %
Unclassified	root	N/A	27.35 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	2.56 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1.71 %
Planctomycetes	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	38.46 %
Unclassified	root	N/A	27.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.56 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	1.71 %
Candidatus Brocadiia	class	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia	0.85 %

Name	Rank	Taxonomy	Distribution
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	38.46 %
Unclassified	root	N/A	27.35 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.56 %
Micrococcales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales	1.71 %
Candidatus Brocadiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.35 %
Candidatus Sulfotelmatobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter	10.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.56 %
Microbacteriaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae	1.71 %
Candidatus Koribacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	1.71 %
Candidatus Brocadiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.35 %
unclassified Candidatus Sulfotelmatobacter	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter	10.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.56 %
Curtobacterium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium	1.71 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %
Candidatus Brocadia	genus	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.35 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	10.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.56 %
unclassified Curtobacterium	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium	1.71 %
unclassified Candidatus Brocadia	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → unclassified Candidatus Brocadia	0.85 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	27.35 %
Candidatus Sulfotelmatobacter sp. SbA7	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	10.26 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	2.56 %
Curtobacterium sp. ER1/6	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	1.71 %
Candidatus Brocadia sp.	species	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → unclassified Candidatus Brocadia → Candidatus Brocadia sp.	0.85 %
Candidatus Koribacter versatilis	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320006\|FACEOR_FYWIORV02G3202	Not Available	500	Open in IMG/M
3300000567\|JGI12270J11330_10003621	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11041	Open in IMG/M
3300000567\|JGI12270J11330_10106057	All Organisms → cellular organisms → Bacteria	1203	Open in IMG/M
3300000567\|JGI12270J11330_10184121	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	733	Open in IMG/M
3300000567\|JGI12270J11330_10279231	Not Available	527	Open in IMG/M
3300001356\|JGI12269J14319_10003193	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	15465	Open in IMG/M
3300001356\|JGI12269J14319_10003648	All Organisms → cellular organisms → Bacteria	14386	Open in IMG/M
3300001356\|JGI12269J14319_10149809	All Organisms → cellular organisms → Bacteria → Acidobacteria	1002	Open in IMG/M
3300001546\|JGI12659J15293_10019116	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1820	Open in IMG/M
3300001593\|JGI12635J15846_10000172	All Organisms → cellular organisms → Bacteria	49467	Open in IMG/M
3300001661\|JGI12053J15887_10262819	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter	854	Open in IMG/M
3300002245\|JGIcombinedJ26739_100106117	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	2635	Open in IMG/M
3300002245\|JGIcombinedJ26739_100283921	All Organisms → cellular organisms → Bacteria	1541	Open in IMG/M
3300002245\|JGIcombinedJ26739_101316156	Not Available	614	Open in IMG/M
3300004080\|Ga0062385_10039423	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1964	Open in IMG/M
3300004080\|Ga0062385_10433687	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	794	Open in IMG/M
3300004091\|Ga0062387_100078320	All Organisms → cellular organisms → Bacteria	1702	Open in IMG/M
3300004091\|Ga0062387_100905753	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	668	Open in IMG/M
3300004091\|Ga0062387_100996732	Not Available	642	Open in IMG/M
3300004092\|Ga0062389_103017649	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	629	Open in IMG/M
3300004635\|Ga0062388_102161978	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	578	Open in IMG/M
3300005178\|Ga0066688_10086576	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1891	Open in IMG/M
3300005468\|Ga0070707_100038588	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4563	Open in IMG/M
3300005518\|Ga0070699_100941113	Not Available	792	Open in IMG/M
3300005537\|Ga0070730_10259860	All Organisms → cellular organisms → Bacteria	1145	Open in IMG/M
3300005569\|Ga0066705_10279502	All Organisms → cellular organisms → Bacteria → Acidobacteria	1059	Open in IMG/M
3300005591\|Ga0070761_10066248	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2046	Open in IMG/M
3300005610\|Ga0070763_10426680	Not Available	749	Open in IMG/M
3300005712\|Ga0070764_10082532	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1694	Open in IMG/M
3300005994\|Ga0066789_10005376	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5650	Open in IMG/M
3300006052\|Ga0075029_100088754	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1842	Open in IMG/M
3300006059\|Ga0075017_100705993	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	776	Open in IMG/M
3300006102\|Ga0075015_100642485	Not Available	625	Open in IMG/M
3300006102\|Ga0075015_100998956	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	512	Open in IMG/M
3300006162\|Ga0075030_100015790	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6557	Open in IMG/M
3300006162\|Ga0075030_100024709	All Organisms → cellular organisms → Bacteria	5151	Open in IMG/M
3300006172\|Ga0075018_10427045	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	678	Open in IMG/M
3300006174\|Ga0075014_100516850	Not Available	671	Open in IMG/M
3300006354\|Ga0075021_10040786	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	2664	Open in IMG/M
3300006354\|Ga0075021_10578874	All Organisms → cellular organisms → Bacteria	715	Open in IMG/M
3300009089\|Ga0099828_10003360	All Organisms → cellular organisms → Bacteria	11181	Open in IMG/M
3300009143\|Ga0099792_10624967	Not Available	689	Open in IMG/M
3300009518\|Ga0116128_1001404	All Organisms → cellular organisms → Bacteria	10659	Open in IMG/M
3300009519\|Ga0116108_1006316	All Organisms → cellular organisms → Bacteria	4920	Open in IMG/M
3300009547\|Ga0116136_1037974	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	1419	Open in IMG/M
3300009624\|Ga0116105_1013249	All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Candidatus Brocadiia → Candidatus Brocadiales → Candidatus Brocadiaceae → Candidatus Brocadia → unclassified Candidatus Brocadia → Candidatus Brocadia sp.	1688	Open in IMG/M
3300009639\|Ga0116122_1011710	All Organisms → cellular organisms → Bacteria	3304	Open in IMG/M
3300009683\|Ga0116224_10229990	Not Available	886	Open in IMG/M
3300009762\|Ga0116130_1019794	All Organisms → cellular organisms → Bacteria	2251	Open in IMG/M
3300010341\|Ga0074045_10292559	Not Available	1069	Open in IMG/M
3300010343\|Ga0074044_10008271	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8105	Open in IMG/M
3300010379\|Ga0136449_100208893	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3696	Open in IMG/M
3300012096\|Ga0137389_11582193	Not Available	551	Open in IMG/M
3300012202\|Ga0137363_10032443	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3620	Open in IMG/M
3300012923\|Ga0137359_10063287	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	3226	Open in IMG/M
3300014156\|Ga0181518_10000996	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	29942	Open in IMG/M
3300014169\|Ga0181531_10048850	All Organisms → cellular organisms → Bacteria	2471	Open in IMG/M
3300014638\|Ga0181536_10155839	Not Available	1194	Open in IMG/M
3300014657\|Ga0181522_10001747	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12932	Open in IMG/M
3300015193\|Ga0167668_1070567	Not Available	696	Open in IMG/M
3300017823\|Ga0187818_10012626	All Organisms → cellular organisms → Bacteria	3618	Open in IMG/M
3300017823\|Ga0187818_10015200	All Organisms → cellular organisms → Bacteria	3291	Open in IMG/M
3300017928\|Ga0187806_1109399	Not Available	888	Open in IMG/M
3300017931\|Ga0187877_1002700	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	15445	Open in IMG/M
3300017938\|Ga0187854_10005799	All Organisms → cellular organisms → Bacteria	8745	Open in IMG/M
3300017940\|Ga0187853_10125829	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Micrococcales → Microbacteriaceae → Curtobacterium → unclassified Curtobacterium → Curtobacterium sp. ER1/6	1243	Open in IMG/M
3300017943\|Ga0187819_10003120	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis	8861	Open in IMG/M
3300017943\|Ga0187819_10032650	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3074	Open in IMG/M
3300017959\|Ga0187779_10394257	Not Available	901	Open in IMG/M
3300017972\|Ga0187781_10000386	All Organisms → cellular organisms → Bacteria	31368	Open in IMG/M
3300018034\|Ga0187863_10026464	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3477	Open in IMG/M
3300018038\|Ga0187855_10062707	All Organisms → cellular organisms → Bacteria	2287	Open in IMG/M
3300018040\|Ga0187862_10504186	Not Available	728	Open in IMG/M
3300018047\|Ga0187859_10004393	All Organisms → cellular organisms → Bacteria → Acidobacteria	8524	Open in IMG/M
3300018057\|Ga0187858_10162004	All Organisms → cellular organisms → Bacteria	1484	Open in IMG/M
3300018086\|Ga0187769_10491590	Not Available	926	Open in IMG/M
3300018089\|Ga0187774_10385457	Not Available	847	Open in IMG/M
3300019256\|Ga0181508_1216261	Not Available	603	Open in IMG/M
3300019284\|Ga0187797_1080991	Not Available	509	Open in IMG/M
3300019284\|Ga0187797_1765906	Not Available	881	Open in IMG/M
3300020582\|Ga0210395_10704652	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	755	Open in IMG/M
3300021405\|Ga0210387_10311816	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	1385	Open in IMG/M
3300021407\|Ga0210383_10027570	All Organisms → cellular organisms → Bacteria → Acidobacteria	4749	Open in IMG/M
3300021478\|Ga0210402_10000028	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	129909	Open in IMG/M
3300021478\|Ga0210402_10584709	Not Available	1035	Open in IMG/M
3300021478\|Ga0210402_11008557	Not Available	759	Open in IMG/M
3300022533\|Ga0242662_10156449	Not Available	693	Open in IMG/M
3300025473\|Ga0208190_1000448	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	17118	Open in IMG/M
3300025480\|Ga0208688_1048985	All Organisms → cellular organisms → Bacteria → Acidobacteria	919	Open in IMG/M
3300025507\|Ga0208188_1000688	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	18211	Open in IMG/M
3300025527\|Ga0208714_1002658	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4920	Open in IMG/M
3300025576\|Ga0208820_1075060	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	877	Open in IMG/M
3300027110\|Ga0208488_1080353	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	529	Open in IMG/M
3300027394\|Ga0209904_1000398	All Organisms → cellular organisms → Bacteria	4077	Open in IMG/M
3300027565\|Ga0209219_1005555	All Organisms → cellular organisms → Bacteria	2730	Open in IMG/M
3300027570\|Ga0208043_1055458	Not Available	1148	Open in IMG/M
3300027587\|Ga0209220_1176945	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	546	Open in IMG/M
3300027605\|Ga0209329_1070266	Not Available	756	Open in IMG/M
3300027643\|Ga0209076_1051270	Not Available	1168	Open in IMG/M
3300027645\|Ga0209117_1085296	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	879	Open in IMG/M
3300027815\|Ga0209726_10035732	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3736	Open in IMG/M
3300027846\|Ga0209180_10001204	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	12841	Open in IMG/M
3300027879\|Ga0209169_10004817	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	7816	Open in IMG/M
3300027882\|Ga0209590_10316654	Not Available	1003	Open in IMG/M
3300027905\|Ga0209415_11150430	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Sulfotelmatobacter → unclassified Candidatus Sulfotelmatobacter → Candidatus Sulfotelmatobacter sp. SbA7	500	Open in IMG/M
3300027911\|Ga0209698_10047933	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	3766	Open in IMG/M
3300028869\|Ga0302263_10202333	Not Available	791	Open in IMG/M
3300029917\|Ga0311326_10100197	All Organisms → cellular organisms → Bacteria	1605	Open in IMG/M
3300031524\|Ga0302320_10175893	All Organisms → cellular organisms → Bacteria → Acidobacteria	3143	Open in IMG/M
3300031718\|Ga0307474_10019108	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4980	Open in IMG/M
3300031754\|Ga0307475_10546389	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	929	Open in IMG/M
3300031823\|Ga0307478_10725068	Not Available	833	Open in IMG/M
3300032782\|Ga0335082_10394827	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1248	Open in IMG/M
3300032805\|Ga0335078_10003585	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	23089	Open in IMG/M
3300032829\|Ga0335070_10009809	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	11208	Open in IMG/M
3300032829\|Ga0335070_10681047	Not Available	962	Open in IMG/M
3300033402\|Ga0326728_10006874	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	30076	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	59.83%
Aquatic	Environmental → Aquatic	40.17%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	56.41%
Freshwater	Environmental → Aquatic → Freshwater	30.77%
Sediment	Environmental → Aquatic → Sediment	9.40%
Peat	Environmental → Terrestrial → Peat	3.42%

Habitat	Taxonomy	Distribution
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	29.91%
Unclassified	Environmental → Terrestrial → Soil → Unclassified	29.91%
Loam	Environmental → Terrestrial → Soil → Loam	14.53%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	11.97%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	9.40%
Unclassified	Environmental → Terrestrial → Peat → Unclassified	3.42%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	18.80%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	17.09%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	12.82%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	10.26%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	9.40%
Unclassified	Environmental → Aquatic → Freshwater → Wetlands → Unclassified	8.55%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	8.55%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	4.27%
Unclassified	Environmental → Terrestrial → Peat → Unclassified → Unclassified	3.42%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	1.71%
Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost	1.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	1.71%
Contaminated	Environmental → Aquatic → Freshwater → Groundwater → Contaminated	0.85%
Permafrost	Environmental → Terrestrial → Soil → Unclassified → Permafrost	0.85%

Habitat	Taxonomy	Distribution
Watersheds	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds	9.40%
Peatlands Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Peatlands Soil	9.40%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	9.40%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland	8.55%
Peatland	Environmental → Aquatic → Freshwater → Wetlands → Bog → Peatland	7.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	6.84%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	5.98%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	5.98%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	4.27%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog	3.42%
Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Soil	3.42%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	3.42%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	3.42%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	2.56%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	1.71%
Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland	1.71%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.71%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	1.71%
Bog	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Bog	1.71%
Groundwater	Environmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater	0.85%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.85%
Glacier Forefield Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Glacier Forefield Soil	0.85%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	0.85%
Arctic Peat Soil	Environmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil	0.85%
Thawing Permafrost	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Thawing Permafrost	0.85%
Soil	Environmental → Terrestrial → Soil → Wetlands → Permafrost → Soil	0.85%
Fen	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Fen	0.85%
Peat Soil	Environmental → Terrestrial → Peat → Unclassified → Unclassified → Peat Soil	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320006	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2+	Environmental	Open in IMG/M
3300000567	Peat soil microbial communities from Weissenstadt, Germany - SII-2010	Environmental	Open in IMG/M
3300001356	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007	Environmental	Open in IMG/M
3300001546	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1	Environmental	Open in IMG/M
3300001593	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2	Environmental	Open in IMG/M
3300001661	Mediterranean Blodgett CA OM1_O3 (Mediterranean Blodgett coassembly)	Environmental	Open in IMG/M
3300002245	Jack Pine, Ontario site 1_JW_OM2H0_M3 (Jack Pine, Ontario combined, ASSEMBLY_DATE=20131027)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005178	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137	Environmental	Open in IMG/M
3300005468	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG	Environmental	Open in IMG/M
3300005518	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG	Environmental	Open in IMG/M
3300005537	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen01_05102014_R1	Environmental	Open in IMG/M
3300005569	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300005610	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 3	Environmental	Open in IMG/M
3300005712	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4	Environmental	Open in IMG/M
3300005994	Permafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil replicate 3 DNA2013-049	Environmental	Open in IMG/M
3300006052	Freshwater sediment microbial communities from North America - Little Laurel Run_MetaG_LLR_2013	Environmental	Open in IMG/M
3300006059	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2012	Environmental	Open in IMG/M
3300006102	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2013	Environmental	Open in IMG/M
3300006162	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012	Environmental	Open in IMG/M
3300006172	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2014	Environmental	Open in IMG/M
3300006174	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Alex Branch Run_MetaG_ABR_2014	Environmental	Open in IMG/M
3300006354	Freshwater sediment microbial communities in response to fracking from Pennsylvania, USA - Cold Stream Run_MetaG_CSR_2012	Environmental	Open in IMG/M
3300009089	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H1.8 metaG	Environmental	Open in IMG/M
3300009143	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2	Environmental	Open in IMG/M
3300009518	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150	Environmental	Open in IMG/M
3300009519	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150	Environmental	Open in IMG/M
3300009547	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40	Environmental	Open in IMG/M
3300009624	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_10	Environmental	Open in IMG/M
3300009639	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_40	Environmental	Open in IMG/M
3300009683	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_b_LC metaG	Environmental	Open in IMG/M
3300009762	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_40	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010379	Sb_50d combined assembly	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300014156	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaG	Environmental	Open in IMG/M
3300014169	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin11_10_metaG	Environmental	Open in IMG/M
3300014638	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin17_60_metaG	Environmental	Open in IMG/M
3300014657	Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin05_10_metaG	Environmental	Open in IMG/M
3300015193	Arctic soil microbial communities from a glacier forefield, Rabots glacier, Tarfala, Sweden (Sample Rb6, proglacial stream)	Environmental	Open in IMG/M
3300017823	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_3	Environmental	Open in IMG/M
3300017928	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - ASW_1	Environmental	Open in IMG/M
3300017931	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_17_100	Environmental	Open in IMG/M
3300017938	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_150	Environmental	Open in IMG/M
3300017940	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_100	Environmental	Open in IMG/M
3300017943	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - SO4_4	Environmental	Open in IMG/M
3300017959	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_Q2_SP10_10_MG	Environmental	Open in IMG/M
3300017972	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MG	Environmental	Open in IMG/M
3300018034	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_11_10	Environmental	Open in IMG/M
3300018038	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_10	Environmental	Open in IMG/M
3300018040	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_150	Environmental	Open in IMG/M
3300018047	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_10_10	Environmental	Open in IMG/M
3300018057	Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_8_150	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300018089	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_20_MG	Environmental	Open in IMG/M
3300019256	Metatranscriptome of peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin10_10_metaT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300019284	Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0216_BV02_MP05_10_MT (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300020582	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-O	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300021407	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-O	Environmental	Open in IMG/M
3300021478	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M	Environmental	Open in IMG/M
3300022533	Metatranscriptome of forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Native-BW-C-7-M (Metagenome Metatranscriptome) (v2)	Environmental	Open in IMG/M
3300025473	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_13_10 (SPAdes)	Environmental	Open in IMG/M
3300025480	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_6_150 (SPAdes)	Environmental	Open in IMG/M
3300025507	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_40 (SPAdes)	Environmental	Open in IMG/M
3300025527	Arctic peat soil from Barrow, Alaska - NGEE Surface sample 415-1 shallow-072012 (SPAdes)	Environmental	Open in IMG/M
3300025576	Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_40 (SPAdes)	Environmental	Open in IMG/M
3300027110	Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF001 (SPAdes)	Environmental	Open in IMG/M
3300027394	Thawing permafrost microbial communities from the Arctic, studying carbon transformations - Permafrost 712P3D	Environmental	Open in IMG/M
3300027565	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_M1 (SPAdes)	Environmental	Open in IMG/M
3300027570	Peat soil microbial communities from Weissenstadt, Germany - Sb_50d_9_AC metaG (SPAdes)	Environmental	Open in IMG/M
3300027587	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM3_M3 (SPAdes)	Environmental	Open in IMG/M
3300027605	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M3 (SPAdes)	Environmental	Open in IMG/M
3300027643	Vadose zone soil and rhizosphere microbial communities from the Eel River Critical Zone Observatory, Northern California to study diel carbon cycling - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_3 (SPAdes)	Environmental	Open in IMG/M
3300027645	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2 (SPAdes)	Environmental	Open in IMG/M
3300027815	Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW46 contaminated, 5.4 m (SPAdes)	Environmental	Open in IMG/M
3300027846	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027879	Warmed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WRM 4 (SPAdes)	Environmental	Open in IMG/M
3300027882	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con1.8 metaG (SPAdes)	Environmental	Open in IMG/M
3300027905	Peat soil microbial communities from Weissenstadt, Germany - SII-SIP-2007 (SPAdes)	Environmental	Open in IMG/M
3300027911	Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012 (SPAdes)	Environmental	Open in IMG/M
3300028869	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - II_Fen_N1_4	Environmental	Open in IMG/M
3300029917	I_Bog_E1 coassembly	Environmental	Open in IMG/M
3300031524	Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - Bog_T0_3	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300032782	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_4.1	Environmental	Open in IMG/M
3300032805	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_3.2	Environmental	Open in IMG/M
3300032829	Soil microbial communities from Loxahatchee National Wildlife Refuge, Florida, United States - Lox_Sample_1.3	Environmental	Open in IMG/M
3300033402	Lab enriched peat soil microbial communities from McLean, Ithaca, NY, United States - MB31MN	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORE_2985050	2032320006	Soil	FEGPPRSERDIMLLAAMRSNGSISGMCWIEGRACPRRYLSMLPSHVRANLFGSD
JGI12270J11330_100036216	3300000567	Peatlands Soil	MRSNGYISLIGACWIEGRACPRRYLSFLPSHVRANLFGCD*
JGI12270J11330_101060572	3300000567	Peatlands Soil	MLIVTMRSKGYISPLQTCWIEGRACPRRYLSVLPSHVRANLFGSD*
JGI12270J11330_101841212	3300000567	Peatlands Soil	MRSNGYISLIGACWIEGRACPRRYLSVLPSHVRANLFGCDNFLSYLLLS
JGI12270J11330_102792311	3300000567	Peatlands Soil	TRDIMFIVTMRSNGYISLFQECWIEGGACPRRYLSVLPSHVRANLFGSD*
JGI12269J14319_100031936	3300001356	Peatlands Soil	MFIVTMRSNGYISLFQECWIEGGACPRRYLSVLPSHVRANLFGSD*
JGI12269J14319_100036488	3300001356	Peatlands Soil	MRSNGYISPLGTXWIEGRACPRRYLSVXPSHVRANLFGSD*
JGI12269J14319_101498092	3300001356	Peatlands Soil	MRSDGHVSPLQTCWIEGRACPRRYLSLLPSHVRANLFGGD*
JGI12659J15293_100191163	3300001546	Forest Soil	MRCNGFIPPLGSSWIEGRACPRRYLSVLPSHVRANLFGSD*
JGI12635J15846_1000017251	3300001593	Forest Soil	MLAAMRSNGYISLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD*
JGI12053J15887_102628192	3300001661	Forest Soil	MFAAAMRSNGYIPLLRTCWVEGRACPRRYLSVLPSHVRANLFGSD*
JGIcombinedJ26739_1001061172	3300002245	Forest Soil	MLLKGSIPSMCWIEGRACPRRYLSVLPSHVRANLFGSD*
JGIcombinedJ26739_1002839211	3300002245	Forest Soil	PTQDIMFVAAMRSNGYIPLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD*
JGIcombinedJ26739_1013161561	3300002245	Forest Soil	PIVMRCNGFIPPLGSSWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0062385_100394232	3300004080	Bog Forest Soil	MSVVAMRSNGYISLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0062385_104336872	3300004080	Bog Forest Soil	MRSNRYISPLQTCWIEGRACPRRYLSVLPSHARANLFGSD*
Ga0062387_1000783202	3300004091	Bog Forest Soil	MRSNRDISPLQTCWIEGLACPRRYLSVLPSRVRANLFGSD*
Ga0062387_1009057532	3300004091	Bog Forest Soil	MRSHGYIPLLMTCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0062387_1009967322	3300004091	Bog Forest Soil	RDQSRDILSIVTMRSTGYISPLQTCWIEGLACPRRYLSVLPSHVRANLFGSD*
Ga0062389_1030176491	3300004092	Bog Forest Soil	MRSNPYISLETCWVEGRACPRRYLSILPSRVRANLFGSD*
Ga0062388_1021619781	3300004635	Bog Forest Soil	MRSNGYISPFQACWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0066688_100865762	3300005178	Soil	MRSNGYIPLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0070707_1000385881	3300005468	Corn, Switchgrass And Miscanthus Rhizosphere	MLLAAMRSNGSISGMCWIEGRACPRRYLSMLPSHVRANLFGSD*
Ga0070699_1009411131	3300005518	Corn, Switchgrass And Miscanthus Rhizosphere	SVIMHSNGSISRMCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0070730_102598602	3300005537	Surface Soil	MRSNGYISLETCWINGRACPRRYLSVLPSHVRANLFGSD*
Ga0066705_102795022	3300005569	Soil	MHSNGSISRMCWVEGGACPRRYLSVLPSNVRANLFGSD*
Ga0070761_100662483	3300005591	Soil	MRCNGYIPPLGSSWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0070763_104266802	3300005610	Soil	SNGYISLLRTCWIEGRACPRRYLSVLPSHARANLFGSD*
Ga0070764_100825322	3300005712	Soil	MRSKNYISPLQTCWIEGRACPRRYLSVLPSHARANLFGSD*
Ga0066789_100053767	3300005994	Soil	MFVAAMRSNGYISPLRTCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075029_1000887542	3300006052	Watersheds	MRSNGSISRLRLCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075017_1007059931	3300006059	Watersheds	MRSNGYISPLQTCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075015_1006424852	3300006102	Watersheds	VIMRSSGSISRLRMCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075015_1009989562	3300006102	Watersheds	MRLKGSISGMCWVEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075030_1000157906	3300006162	Watersheds	MRLNGSISGMCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075030_1000247096	3300006162	Watersheds	MRTNGSISRICWIKGLACPRRYLSLLPSHVRANLFGSD*
Ga0075018_104270452	3300006172	Watersheds	MRSNGSNSGLRICWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075014_1005168502	3300006174	Watersheds	DILLVAAMRSKGYISPLQACWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075021_100407863	3300006354	Watersheds	MLSNGSNSGLRICWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0075021_105788742	3300006354	Watersheds	MTIVAMRSKNSISRETCWIEGRACPRRYLSVLPSRMRANLFGD*
Ga0099828_1000336013	3300009089	Vadose Zone Soil	MHSNGSISRMCWVEGRACPRRYLSVLPSHVRANLFGSD*
Ga0099792_106249671	3300009143	Vadose Zone Soil	NGSISRMCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0116128_10014047	3300009518	Peatland	MLAVAMRFNGYISLLQTCWIEGRACPRRYLSVLPSRVRANLFGSD*
Ga0116108_10063166	3300009519	Peatland	MSVAAMHSNVYISPFQACWIEGRACPRRYLSVLPSHVRANLFGCD*
Ga0116136_10379741	3300009547	Peatland	MLAVAMRFNGYISLLQTCWIEGRACPRRYLSLLPSNVRANLFGSD*
Ga0116105_10132492	3300009624	Peatland	MRRNGYISPLGSSWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0116122_10117102	3300009639	Peatland	MRSNGYISLIGACWIEGRACPRRYLSVLPSHVRANLFGCD*
Ga0116224_102299902	3300009683	Peatlands Soil	AMRSNGYISLIGACWIEGRACPRRYLSVLPSHVRANLFGCD*
Ga0116130_10197941	3300009762	Peatland	LFLVAMRSNGYISLIGACWIEGRACPRRYLSVLPSHVRANLFGCD*
Ga0074045_102925591	3300010341	Bog Forest Soil	NGSISRICWIKGLACPRRYLSLLPSHVRANLFGSD*
Ga0074044_100082717	3300010343	Bog Forest Soil	MRVKAHIPLLQACWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0136449_1002088935	3300010379	Peatlands Soil	MRSNGYISPLQTCWIEGRACPRRYLSVLPSHVRANLFG
Ga0137389_115821931	3300012096	Vadose Zone Soil	IMHSNGSISRMCWVEGRACPRRYLSVLPSHVRANLFGSD*
Ga0137363_100324434	3300012202	Vadose Zone Soil	MSVAAMRSNGYIPLLRSCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0137359_100632874	3300012923	Vadose Zone Soil	MRSNGYIPLLRSCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0181518_1000099627	3300014156	Bog	MRLSIYIPILQACWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0181531_100488501	3300014169	Bog	PPENTGYNRIVIMRLPSSILAMCWIEGRACPRRYLSVLPSRVRANLFGSD*
Ga0181536_101558391	3300014638	Bog	NGYISLLQTCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0181522_1000174714	3300014657	Bog	MRLKGSISDMSWVEGRACPRRYLSVLPSNVRANLFGSD*
Ga0167668_10705672	3300015193	Glacier Forefield Soil	YIPLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD*
Ga0187818_100126262	3300017823	Freshwater Sediment	MRSNGYISLLQECWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0187818_100152002	3300017823	Freshwater Sediment	MHPNGSISRMCWIEGRACPRRYLCVLPSHVRANLFGSD
Ga0187806_11093992	3300017928	Freshwater Sediment	AMRSNGYISLIGACWIEGRACPRRYLSVLPSHVRANLFGCD
Ga0187877_10027005	3300017931	Peatland	MLAVAMRFNGYISLLQTCWIEGRACPRRYLSVLPSRVRANLFGSD
Ga0187854_100057993	3300017938	Peatland	MSVAAMHSNVYISPFQACWIEGRACPRRYLSVLPSHVRANLFGCD
Ga0187853_101258291	3300017940	Peatland	GDIMLAVAMRFNGYISLLQTCWIEGRACPRRYLSLLPSNVRANLFGSD
Ga0187819_100031208	3300017943	Freshwater Sediment	MRSNGYISLLQECWIKGRACPRRYLSVLPSHVRANLFGSD
Ga0187819_100326503	3300017943	Freshwater Sediment	MRSNGYISLIGACWIEGRACPRRYLSVLPSHVRANLFGCD
Ga0187779_103942572	3300017959	Tropical Peatland	GYISLLQECWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0187781_1000038623	3300017972	Tropical Peatland	MRSCGSNSLRICWIEGLACPRRYLHFLPSRMRANLFGD
Ga0187863_100264642	3300018034	Peatland	MSLVMRSKGYNSPLRSSWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0187855_100627073	3300018038	Peatland	MRWTGYISPLQTCWIEGLACPRRYLSVLPSHVRANLFGSD
Ga0187862_105041862	3300018040	Peatland	VAMRSNGYISLIGACWIEGRACPRRYLSVLPSHVRANLFGCD
Ga0187859_100043934	3300018047	Peatland	MFLVMRRNGYISPLGSSWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0187858_101620042	3300018057	Peatland	TGDIMLAVAMRFNGYISLLQTCWIEGRACPRRYLSLLPSNVRANLFGSD
Ga0187769_104915902	3300018086	Tropical Peatland	MRSNGSIPGICWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0187774_103854572	3300018089	Tropical Peatland	AVAMRSNGSISRLQLCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0181508_12162611	3300019256	Peatland	QSSILAMCWIEGRACPRRYLSVLPSRVRANLFGSD
Ga0187797_10809911	3300019284	Peatland	NGSIPGICWIEGRACPRRYLSVLPSHVRANLFGSY
Ga0187797_17659061	3300019284	Peatland	SKGSIAVRICWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0210395_107046521	3300020582	Soil	MRCNGYIPPLGSSWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0210387_103118162	3300021405	Soil	AGYNGTSDMRLTGSNSLPGMCWIEGRACPRRYLSVLPSRVRANLFGSD
Ga0210383_100275703	3300021407	Soil	MSIAAMRSKGYISPLQTCWIEGRACPRRYLSVLPSHARANLFGSD
Ga0210402_1000002850	3300021478	Soil	MRTNGSISRMCWIEGRACPRRYLCVLPSNVRANLFGSD
Ga0210402_105847092	3300021478	Soil	NGSISRMCWIEGRACPRRYLCVLPSNMRAGLFGSD
Ga0210402_110085572	3300021478	Soil	LMLLKDSISGLCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0242662_101564492	3300022533	Soil	SNGYIPLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0208190_10004483	3300025473	Peatland	MRSKSSIPAMCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0208688_10489853	3300025480	Peatland	MLAVAMRFNGYISLLQTCWIEGRACPRRYLSVLPSRVRANLFG
Ga0208188_100068813	3300025507	Peatland	MLAVAMRFNGYISLLQTCWIEGRACPRRYLSLLPSNVRANLFGSD
Ga0208714_10026583	3300025527	Arctic Peat Soil	MMLAAMRSNGHISLEICWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0208820_10750601	3300025576	Peatland	MHSNVYISPFQACWIEGRACPRRYLSVLPSHVRANLF
Ga0208488_10803531	3300027110	Forest Soil	MRSNGYISLLRTCWIEGRACPRRYLSVLPSHARANLFGSD
Ga0209904_10003985	3300027394	Thawing Permafrost	MLIIAMRSNSYISLLQECWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0209219_10055554	3300027565	Forest Soil	MRSNGYIPLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0208043_10554582	3300027570	Peatlands Soil	NGYISLIGACWIEGRACPRRYLSFLPSHVRANLFGCD
Ga0209220_11769452	3300027587	Forest Soil	MFTAAMRSNGYISLLRTCWVEGRACPRRYLSVLPSHVRANL
Ga0209329_10702661	3300027605	Forest Soil	AAMRSNGYIPLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0209076_10512701	3300027643	Vadose Zone Soil	VTMRSNGYIPLLRSCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0209117_10852962	3300027645	Forest Soil	MSEAAMRSNGYISLLRTCWIEGRACPRRYLSVLPSHVRANLFGS
Ga0209726_100357325	3300027815	Groundwater	MRSNGSISRMCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0209180_100012042	3300027846	Vadose Zone Soil	MHSNGSISRMCWVEGRACPRRYLSVLPSHVRANLFGSD
Ga0209169_100048172	3300027879	Soil	MRSKNYISPLQTCWIEGRACPRRYLSVLPSHARANLFGSD
Ga0209590_103166541	3300027882	Vadose Zone Soil	FVVAMRSNGYIPLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0209415_111504302	3300027905	Peatlands Soil	MFIVAMRSNGYISVIGTCWIEGRACPRRYLSVLPSHVRAN
Ga0209698_100479334	3300027911	Watersheds	MRLNGSISGMCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0302263_102023331	3300028869	Fen	PLAAMRPNGSISRMCWVEGRACPRRYLCVLPSHVRANLFGSD
Ga0311326_101001971	3300029917	Bog	AAMRMNGYISPFPTCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0302320_101758932	3300031524	Bog	MRWNGYIPLFQACWIEGRACPRRYLSLLPSHVRANLFGD
Ga0307474_100191082	3300031718	Hardwood Forest Soil	MSVAAMRSNGYISLLRTCWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0307475_105463892	3300031754	Hardwood Forest Soil	MPVAAMRSNGYISLLRTCWVEGRACPRRYLSVLPSHVRANLFGS
Ga0307478_107250681	3300031823	Hardwood Forest Soil	FFMRSKGSISGLCWIEGRACPRRYLSVLPSNVRANLFGSD
Ga0335082_103948271	3300032782	Soil	MRSNGSISRMCWIEGRACPRRYLCVLPSNMRAGLFGS
Ga0335078_1000358518	3300032805	Soil	MRSQGPISANGWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0335070_100098095	3300032829	Soil	MRSKGSISANGWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0335070_106810471	3300032829	Soil	NCGYNQGVNLRSNGSISRLRICWIEGRACPRRYLSVLPSHVRANLFGSD
Ga0326728_100068749	3300033402	Peat Soil	MRSLGSNSLRICWIEGRACPRRYLRLLPSRMRANLFGD

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077714

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences