Metagenome / Metatranscriptome Family F077787

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077787
Family Type	Metagenome / Metatranscriptome
Number of Sequences	117
Average Sequence Length	55 residues
Representative Sequence	MADKKQFSVVLSYDVQKTFIVEAKDADEAYDIAYNGEGEVDNEDWEYREHIETEEV
Number of Associated Samples	99
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	Yes
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	76.07 %
% of genes near scaffold ends (potentially truncated)	38.46 %
% of genes from short scaffolds (< 2000 bps)	79.49 %
Associated GOLD sequencing projects	88
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.50

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (46.154 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine (26.496 % of family members)
Environment Ontology (ENVO)	Unclassified (65.812 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Saline → Water (saline) (86.325 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 11.90% β-sheet: 30.95% Coil/Unstructured: 57.14%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.50
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.50
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF07486	Hydrolase_2	3.42
PF06676	DUF1178	0.85
PF10544	T5orf172	0.85
PF01068	DNA_ligase_A_M	0.85
PF14099	Polysacc_lyase	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG3773	Cell wall hydrolase CwlJ, involved in spore germination	Cell cycle control, cell division, chromosome partitioning [D]	3.42
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	0.85
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	0.85
COG5319	Uncharacterized conserved protein, DUF1178 domain	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	53.85 %
Unclassified	root	N/A	46.15 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Viruses	superkingdom	All Organisms → Viruses	30.77 %
cellular organisms	root	All Organisms → cellular organisms	23.08 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	23.08 %
environmental samples	no rank	All Organisms → Viruses → environmental samples	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	11.11 %
FCB group	clade	All Organisms → cellular organisms → Bacteria → FCB group	7.69 %
PVC group	clade	All Organisms → cellular organisms → Bacteria → PVC group	1.71 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	1.71 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	9.40 %
Bacteroidetes/Chlorobi group	clade	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group	7.69 %
Verrucomicrobia	phylum	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia	1.71 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	1.71 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
Rickettsiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales	9.40 %
Bacteroidetes	phylum	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes	7.69 %
Verrucomicrobiae	class	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae	1.71 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	1.71 %
unclassified Gammaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
unclassified Rickettsiales	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales	9.40 %
Flavobacteriia	class	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia	7.69 %
Verrucomicrobiales	order	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales	1.71 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	1.71 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	8.55 %
Flavobacteriales	order	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales	7.69 %
Verrucomicrobiaceae	family	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae	1.71 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	1.71 %
Rickettsiales bacterium TMED131	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	8.55 %
Crocinitomicaceae	family	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae	7.69 %
unclassified Verrucomicrobiaceae	no rank	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae	1.71 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	1.71 %
Rickettsiales bacterium TMED131	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	8.55 %
unclassified Crocinitomicaceae	no rank	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae	7.69 %
Verrucomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	1.71 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	1.71 %
Rickettsiales bacterium TMED131	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	46.15 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	29.06 %
Rickettsiales bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	8.55 %
Crocinitomicaceae bacterium TMED45	species	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	7.69 %
Verrucomicrobiaceae bacterium	species	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	1.71 %
uncultured virus	species	All Organisms → Viruses → environmental samples → uncultured virus	1.71 %
Rickettsiales bacterium TMED131	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131	0.85 %
Gammaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300000117\|DelMOWin2010_c10034365	All Organisms → Viruses → Predicted Viral	2423	Open in IMG/M
3300000117\|DelMOWin2010_c10098676	All Organisms → Viruses → Predicted Viral	1077	Open in IMG/M
3300000250\|LPfeb09P261000mDRAFT_1008738	Not Available	2021	Open in IMG/M
3300001460\|JGI24003J15210_10017237	All Organisms → Viruses → Predicted Viral	2804	Open in IMG/M
3300001460\|JGI24003J15210_10065182	All Organisms → Viruses → Predicted Viral	1157	Open in IMG/M
3300001472\|JGI24004J15324_10071118	Not Available	968	Open in IMG/M
3300002482\|JGI25127J35165_1023824	All Organisms → Viruses → Predicted Viral	1452	Open in IMG/M
3300003345\|JGI26080J50196_1073192	Not Available	612	Open in IMG/M
3300003345\|JGI26080J50196_1085169	Not Available	551	Open in IMG/M
3300004448\|Ga0065861_1031370	Not Available	517	Open in IMG/M
3300005398\|Ga0066858_10105847	Not Available	820	Open in IMG/M
3300005428\|Ga0066863_10035365	All Organisms → Viruses → Predicted Viral	1905	Open in IMG/M
3300005430\|Ga0066849_10006059	All Organisms → cellular organisms → Bacteria	4936	Open in IMG/M
3300005516\|Ga0066831_10087471	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	843	Open in IMG/M
3300005605\|Ga0066850_10024117	All Organisms → Viruses → Predicted Viral	2554	Open in IMG/M
3300005735\|Ga0076923_111299	All Organisms → Viruses → Predicted Viral	3438	Open in IMG/M
3300005747\|Ga0076924_1064420	Not Available	5946	Open in IMG/M
3300005913\|Ga0075108_10021428	All Organisms → Viruses → Predicted Viral	2506	Open in IMG/M
3300006093\|Ga0082019_1020238	All Organisms → Viruses → Predicted Viral	1275	Open in IMG/M
3300006164\|Ga0075441_10225632	Not Available	693	Open in IMG/M
3300006735\|Ga0098038_1030551	All Organisms → Viruses → Predicted Viral	2011	Open in IMG/M
3300006752\|Ga0098048_1221653	Not Available	556	Open in IMG/M
3300006869\|Ga0075477_10029253	All Organisms → Viruses → Predicted Viral	2528	Open in IMG/M
3300006869\|Ga0075477_10152792	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium TMED131	963	Open in IMG/M
3300006870\|Ga0075479_10219195	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	760	Open in IMG/M
3300007236\|Ga0075463_10103193	All Organisms → Viruses → environmental samples → uncultured virus	920	Open in IMG/M
3300007236\|Ga0075463_10296251	Not Available	518	Open in IMG/M
3300007276\|Ga0070747_1285291	Not Available	569	Open in IMG/M
3300007344\|Ga0070745_1297888	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	575	Open in IMG/M
3300007346\|Ga0070753_1142288	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	912	Open in IMG/M
3300007778\|Ga0102954_1194967	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	593	Open in IMG/M
3300007960\|Ga0099850_1050786	All Organisms → Viruses → Predicted Viral	1769	Open in IMG/M
3300009000\|Ga0102960_1195948	Not Available	721	Open in IMG/M
3300009001\|Ga0102963_1168450	Not Available	879	Open in IMG/M
3300009027\|Ga0102957_1043098	All Organisms → Viruses → Predicted Viral	1547	Open in IMG/M
3300009172\|Ga0114995_10305838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	875	Open in IMG/M
3300009420\|Ga0114994_10790378	Not Available	617	Open in IMG/M
3300009425\|Ga0114997_10753104	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	508	Open in IMG/M
3300009438\|Ga0115559_1221524	Not Available	678	Open in IMG/M
3300009447\|Ga0115560_1179355	Not Available	829	Open in IMG/M
3300009495\|Ga0115571_1308218	Not Available	629	Open in IMG/M
3300009505\|Ga0115564_10236090	Not Available	937	Open in IMG/M
3300009593\|Ga0115011_10034585	All Organisms → cellular organisms → Bacteria → Proteobacteria	3411	Open in IMG/M
3300009593\|Ga0115011_10309440	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1203	Open in IMG/M
3300009601\|Ga0114914_1052538	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	654	Open in IMG/M
3300009677\|Ga0115104_10282495	Not Available	587	Open in IMG/M
3300009705\|Ga0115000_10745221	Not Available	603	Open in IMG/M
3300009705\|Ga0115000_11018609	Not Available	504	Open in IMG/M
3300010296\|Ga0129348_1154776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → unclassified Gammaproteobacteria → Gammaproteobacteria bacterium	792	Open in IMG/M
3300010299\|Ga0129342_1224942	Not Available	660	Open in IMG/M
3300010368\|Ga0129324_10109993	All Organisms → Viruses → Predicted Viral	1180	Open in IMG/M
3300012524\|Ga0129331_1448606	Not Available	518	Open in IMG/M
3300012525\|Ga0129353_1170040	Not Available	728	Open in IMG/M
3300017697\|Ga0180120_10364643	Not Available	570	Open in IMG/M
3300017743\|Ga0181402_1147049	Not Available	598	Open in IMG/M
3300017763\|Ga0181410_1143197	Not Available	674	Open in IMG/M
3300017776\|Ga0181394_1152370	Not Available	718	Open in IMG/M
3300017956\|Ga0181580_10604374	Not Available	706	Open in IMG/M
3300018420\|Ga0181563_10278623	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	986	Open in IMG/M
3300020353\|Ga0211613_1000328	Not Available	14286	Open in IMG/M
3300020431\|Ga0211554_10000890	Not Available	22095	Open in IMG/M
3300020438\|Ga0211576_10599889	Not Available	548	Open in IMG/M
3300020470\|Ga0211543_10497330	Not Available	580	Open in IMG/M
3300021087\|Ga0206683_10322938	Not Available	784	Open in IMG/M
3300021356\|Ga0213858_10057368	All Organisms → Viruses → Predicted Viral	1890	Open in IMG/M
3300021371\|Ga0213863_10042892	All Organisms → Viruses → Predicted Viral	2402	Open in IMG/M
3300021373\|Ga0213865_10011126	Not Available	5184	Open in IMG/M
3300021957\|Ga0222717_10083685	All Organisms → Viruses → Predicted Viral	2014	Open in IMG/M
3300021957\|Ga0222717_10088468	All Organisms → Viruses → Predicted Viral	1948	Open in IMG/M
3300021957\|Ga0222717_10116681	All Organisms → Viruses → Predicted Viral	1656	Open in IMG/M
3300021957\|Ga0222717_10296158	Not Available	925	Open in IMG/M
3300021958\|Ga0222718_10063166	All Organisms → Viruses → Predicted Viral	2294	Open in IMG/M
3300021958\|Ga0222718_10188817	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	1133	Open in IMG/M
3300021958\|Ga0222718_10291225	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	851	Open in IMG/M
3300021959\|Ga0222716_10168297	All Organisms → Viruses → Predicted Viral	1415	Open in IMG/M
3300021960\|Ga0222715_10321294	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	872	Open in IMG/M
3300021964\|Ga0222719_10148343	All Organisms → Viruses → Predicted Viral	1656	Open in IMG/M
3300021964\|Ga0222719_10254698	All Organisms → Viruses → Predicted Viral	1164	Open in IMG/M
3300021964\|Ga0222719_10527792	Not Available	702	Open in IMG/M
3300021964\|Ga0222719_10545016	Not Available	686	Open in IMG/M
3300022227\|Ga0187827_10222253	All Organisms → Viruses → Predicted Viral	1266	Open in IMG/M
3300022842\|Ga0222632_1005275	All Organisms → Viruses → Predicted Viral	3009	Open in IMG/M
3300022923\|Ga0255783_10118756	All Organisms → Viruses → environmental samples → uncultured virus	1348	Open in IMG/M
3300023105\|Ga0255782_10319546	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	720	Open in IMG/M
3300024293\|Ga0228651_1083290	Not Available	739	Open in IMG/M
3300024344\|Ga0209992_10398378	Not Available	544	Open in IMG/M
3300024346\|Ga0244775_10662207	Not Available	844	Open in IMG/M
3300025102\|Ga0208666_1014441	All Organisms → Viruses → Predicted Viral	2626	Open in IMG/M
3300025120\|Ga0209535_1052858	All Organisms → Viruses → Predicted Viral	1716	Open in IMG/M
3300025120\|Ga0209535_1118259	Not Available	907	Open in IMG/M
3300025120\|Ga0209535_1142550	Not Available	771	Open in IMG/M
3300025127\|Ga0209348_1075364	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	1086	Open in IMG/M
3300025137\|Ga0209336_10000940	All Organisms → cellular organisms → Bacteria	14508	Open in IMG/M
3300025141\|Ga0209756_1228361	Not Available	694	Open in IMG/M
3300025276\|Ga0208814_1102537	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	716	Open in IMG/M
3300025483\|Ga0209557_1073285	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	777	Open in IMG/M
3300025626\|Ga0209716_1095806	Not Available	854	Open in IMG/M
3300025636\|Ga0209136_1125531	Not Available	705	Open in IMG/M
3300025671\|Ga0208898_1161538	All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium	591	Open in IMG/M
3300025696\|Ga0209532_1129805	Not Available	811	Open in IMG/M
3300025810\|Ga0208543_1046368	All Organisms → Viruses → Predicted Viral	1075	Open in IMG/M
3300025849\|Ga0209603_1202452	Not Available	758	Open in IMG/M
3300026183\|Ga0209932_1073160	All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Crocinitomicaceae → unclassified Crocinitomicaceae → Crocinitomicaceae bacterium TMED45	791	Open in IMG/M
3300026260\|Ga0208408_1017178	All Organisms → Viruses → Predicted Viral	2836	Open in IMG/M
3300027906\|Ga0209404_10009445	Not Available	5375	Open in IMG/M
3300028190\|Ga0257108_1040273	All Organisms → Viruses → Predicted Viral	1409	Open in IMG/M
3300028197\|Ga0257110_1001425	All Organisms → cellular organisms → Bacteria	11322	Open in IMG/M
3300028487\|Ga0257109_1118413	Not Available	794	Open in IMG/M
3300028488\|Ga0257113_1118869	Not Available	809	Open in IMG/M
3300031519\|Ga0307488_10086609	All Organisms → Viruses → Predicted Viral	2316	Open in IMG/M
3300031519\|Ga0307488_10279629	All Organisms → Viruses → Predicted Viral	1085	Open in IMG/M
3300031594\|Ga0302131_1286994	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	519	Open in IMG/M
3300031605\|Ga0302132_10340483	Not Available	687	Open in IMG/M
3300032011\|Ga0315316_10647580	Not Available	880	Open in IMG/M
3300032151\|Ga0302127_10184617	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rickettsiales → unclassified Rickettsiales → Rickettsiales bacterium	942	Open in IMG/M
3300032277\|Ga0316202_10141371	All Organisms → Viruses → Predicted Viral	1118	Open in IMG/M
3300032360\|Ga0315334_11204178	Not Available	654	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Aquatic	Environmental → Aquatic	100.00%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine	94.02%
Non-Marine Saline And Alkaline	Environmental → Aquatic → Non-Marine Saline And Alkaline	5.98%

Habitat	Taxonomy	Distribution
Oceanic	Environmental → Aquatic → Marine → Oceanic	33.33%
Coastal	Environmental → Aquatic → Marine → Coastal	21.37%
Unclassified	Environmental → Aquatic → Marine → Unclassified	18.80%
Intertidal Zone	Environmental → Aquatic → Marine → Intertidal Zone	9.40%
Saline	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline	5.98%
Pelagic	Environmental → Aquatic → Marine → Pelagic	5.13%
Neritic Zone	Environmental → Aquatic → Marine → Neritic Zone	2.56%
Strait	Environmental → Aquatic → Marine → Strait	2.56%
Volcanic	Environmental → Aquatic → Marine → Volcanic	0.85%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Aquatic → Marine → Oceanic → Unclassified	32.48%
Unclassified	Environmental → Aquatic → Marine → Coastal → Unclassified	20.51%
Unclassified	Environmental → Aquatic → Marine → Unclassified → Unclassified	18.80%
Unclassified	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified	5.98%
Unclassified	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified	5.98%
Unclassified	Environmental → Aquatic → Marine → Pelagic → Unclassified	5.13%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh	3.42%
Unclassified	Environmental → Aquatic → Marine → Neritic Zone → Unclassified	2.56%
Unclassified	Environmental → Aquatic → Marine → Strait → Unclassified	2.56%
Aphotic Zone	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone	0.85%
Sediment	Environmental → Aquatic → Marine → Coastal → Sediment	0.85%
Unclassified	Environmental → Aquatic → Marine → Volcanic → Unclassified	0.85%

Habitat	Taxonomy	Distribution
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	26.50%
Aqueous	Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous	11.11%
Estuarine Water	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine Water	11.11%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	5.13%
Pelagic Marine	Environmental → Aquatic → Marine → Pelagic → Unclassified → Pelagic Marine	5.13%
Marine	Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine	3.42%
Seawater	Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater	3.42%
Freshwater To Marine Saline Gradient	Environmental → Aquatic → Marine → Coastal → Unclassified → Freshwater To Marine Saline Gradient	3.42%
Marine	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Marine	3.42%
Salt Marsh	Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh	3.42%
Pond Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Pond Water	3.42%
Seawater	Environmental → Aquatic → Marine → Intertidal Zone → Unclassified → Seawater	2.56%
Seawater	Environmental → Aquatic → Marine → Strait → Unclassified → Seawater	2.56%
Deep Ocean	Environmental → Aquatic → Marine → Oceanic → Unclassified → Deep Ocean	1.71%
Sackhole Brine	Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine	1.71%
Marine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine	1.71%
Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Marine	1.71%
Seawater	Environmental → Aquatic → Marine → Oceanic → Unclassified → Seawater	0.85%
Marine	Environmental → Aquatic → Marine → Oceanic → Aphotic Zone → Marine	0.85%
Microbial Mat	Environmental → Aquatic → Marine → Coastal → Sediment → Microbial Mat	0.85%
Marine	Environmental → Aquatic → Marine → Coastal → Unclassified → Marine	0.85%
Estuarine	Environmental → Aquatic → Marine → Unclassified → Unclassified → Estuarine	0.85%
Pelagic Marine	Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine	0.85%
Deep Subsurface	Environmental → Aquatic → Marine → Volcanic → Unclassified → Deep Subsurface	0.85%
Saline Lake	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Lake	0.85%
Saline Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Saline Water	0.85%
Water	Environmental → Aquatic → Non-Marine Saline And Alkaline → Saline → Unclassified → Water	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300000117	Marine microbial communities from Delaware Coast, sample from Delaware MO Winter December 2010	Environmental	Open in IMG/M
3300000250	Marine microbial communities from expanding oxygen minimum zones in Line P, North Pacific Ocean - February 2009 P26 1000m	Environmental	Open in IMG/M
3300001460	Marine viral communities from the Pacific Ocean - LP-28	Environmental	Open in IMG/M
3300001472	Marine viral communities from the Pacific Ocean - LP-32	Environmental	Open in IMG/M
3300002482	Marine viral communities from the Pacific Ocean - ETNP_2_30	Environmental	Open in IMG/M
3300003345	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA	Environmental	Open in IMG/M
3300004448	Marine viral communities from Newfoundland, Canada BC-1	Environmental	Open in IMG/M
3300005398	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV201	Environmental	Open in IMG/M
3300005428	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014F10-02SV253	Environmental	Open in IMG/M
3300005430	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV69	Environmental	Open in IMG/M
3300005516	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201306PF49B	Environmental	Open in IMG/M
3300005605	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67	Environmental	Open in IMG/M
3300005735	Seawater microbial communities from Vineyard Sound, MA, USA - control T0	Environmental	Open in IMG/M
3300005747	Seawater microbial communities from Vineyard Sound, MA, USA - control T14	Environmental	Open in IMG/M
3300005913	Saline lake microbial communities from Ace Lake, Antarctica - Antarctic Ace Lake Metagenome 02UK1	Environmental	Open in IMG/M
3300006093	Marine microbial communities from the Eastern Tropical South Pacific Oxygen Minumum Zone, cruise NBP1315, 2013 - sample NBP189	Environmental	Open in IMG/M
3300006164	Marine microbial communities from the West Antarctic Peninsula - Coastal water metaG002-DNA	Environmental	Open in IMG/M
3300006735	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG	Environmental	Open in IMG/M
3300006752	Marine viral communities from the Subarctic Pacific Ocean - 13_ETSP_OMZ_AT15268 metaG	Environmental	Open in IMG/M
3300006869	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_22_N_>0.8_DNA	Environmental	Open in IMG/M
3300006870	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Sum_29_D_>0.8_DNA	Environmental	Open in IMG/M
3300007236	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA	Environmental	Open in IMG/M
3300007276	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_31	Environmental	Open in IMG/M
3300007344	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4	Environmental	Open in IMG/M
3300007346	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31	Environmental	Open in IMG/M
3300007778	Water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG R2A_C_H2O_MG	Environmental	Open in IMG/M
3300007960	Freshwater to marine saline gradient viral communities from Chesapeake Bay - CB_1508_1D Viral MetaG	Environmental	Open in IMG/M
3300009000	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG	Environmental	Open in IMG/M
3300009001	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_C_H2O_MG	Environmental	Open in IMG/M
3300009027	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_A_H2O_MG	Environmental	Open in IMG/M
3300009172	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_154	Environmental	Open in IMG/M
3300009420	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB2_152	Environmental	Open in IMG/M
3300009425	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB4_136	Environmental	Open in IMG/M
3300009438	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110506	Environmental	Open in IMG/M
3300009447	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110509	Environmental	Open in IMG/M
3300009495	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531	Environmental	Open in IMG/M
3300009505	Pelagic marine microbial communities from North Sea - COGITO_mtgs_110523	Environmental	Open in IMG/M
3300009593	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome	Environmental	Open in IMG/M
3300009601	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_38	Environmental	Open in IMG/M
3300009677	Marine eukaryotic communities from Pacific Ocean to study complex ecological interactions - CN13ID_70_C50_10m_0.8um Metatranscriptome (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300009705	Marine microbial communities from western Arctic Ocean - ArcticOcean_MG_CB8_128	Environmental	Open in IMG/M
3300010296	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.8_DNA	Environmental	Open in IMG/M
3300010299	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_15_0.2_DNA	Environmental	Open in IMG/M
3300010368	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_15_0.2_DNA	Environmental	Open in IMG/M
3300012524	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_RNA1 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300012525	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Sum_27_0.2_RNA2 (Metagenome Metatranscriptome)	Environmental	Open in IMG/M
3300017697	Freshwater to marine salinity gradient microbial communities from Chesapeake Bay, USA - CPBay_Spr_31_0.2_DNA (version 2)	Environmental	Open in IMG/M
3300017743	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 25 SPOT_SRF_2011-08-17	Environmental	Open in IMG/M
3300017763	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 33 SPOT_SRF_2012-06-20	Environmental	Open in IMG/M
3300017776	Marine viral communities from the oligotrophic San Pedro Time Series (SPOT) site, San Pedro Channel, CA, USA ? 17 SPOT_SRF_2010-11-23	Environmental	Open in IMG/M
3300017956	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 071403BT metaG (megahit assembly)	Environmental	Open in IMG/M
3300018420	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011512CT metaG (megahit assembly)	Environmental	Open in IMG/M
3300020353	Marine microbial communities from Tara Oceans - TARA_B100000686 (ERX556093-ERR598998)	Environmental	Open in IMG/M
3300020431	Marine microbial communities from Tara Oceans - TARA_B100001142 (ERX556101-ERR598983)	Environmental	Open in IMG/M
3300020438	Marine microbial communities from Tara Oceans - TARA_B100001094 (ERX555907-ERR598942)	Environmental	Open in IMG/M
3300020470	Marine microbial communities from Tara Oceans - TARA_B100000287 (ERX555976-ERR599053)	Environmental	Open in IMG/M
3300021087	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M2 80m 12015	Environmental	Open in IMG/M
3300021356	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO245	Environmental	Open in IMG/M
3300021371	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO497	Environmental	Open in IMG/M
3300021373	Coastal seawater microbial communities near Pivers Island, North Carolina, United States - PICO282	Environmental	Open in IMG/M
3300021957	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_18D	Environmental	Open in IMG/M
3300021958	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_27D	Environmental	Open in IMG/M
3300021959	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_13D	Environmental	Open in IMG/M
3300021960	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_9D	Environmental	Open in IMG/M
3300021964	Estuarine water microbial communities from San Francisco Bay, California, United States - C33_34D	Environmental	Open in IMG/M
3300022227	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP2014_SV_150_PacBio MetaG (Illumina Assembly)	Environmental	Open in IMG/M
3300022842	Saline water microbial communities from Ace Lake, Antarctica - #46	Environmental	Open in IMG/M
3300022923	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 011507BT metaG	Environmental	Open in IMG/M
3300023105	Coastal salt marsh microbial communities from the Groves Creek Marsh, Skidaway Island, Georgia - 101408AT metaG	Environmental	Open in IMG/M
3300024293	Seawater microbial communities from Monterey Bay, California, United States - 63D	Environmental	Open in IMG/M
3300024344	Deep subsurface microbial communities from Kolumbo volcano to uncover new lineages of life (NeLLi) - 2SBTROV12_ACTIVE470 metaG (SPAdes)	Environmental	Open in IMG/M
3300024346	Whole water sample coassembly	Environmental	Open in IMG/M
3300025102	Marine viral communities from the Subarctic Pacific Ocean - 5B_ETSP_OMZ_AT15132_CsCl metaG (SPAdes)	Environmental	Open in IMG/M
3300025120	Marine viral communities from the Pacific Ocean - LP-28 (SPAdes)	Environmental	Open in IMG/M
3300025127	Marine viral communities from the Pacific Ocean - ETNP_2_30 (SPAdes)	Environmental	Open in IMG/M
3300025137	Marine viral communities from the Pacific Ocean - LP-32 (SPAdes)	Environmental	Open in IMG/M
3300025141	Marine viral communities from the Pacific Ocean - ETNP_6_85 (SPAdes)	Environmental	Open in IMG/M
3300025276	Marine viral communities from the Global Malaspina Expedition - Malaspina viral metaG Antarct_55 (SPAdes)	Environmental	Open in IMG/M
3300025483	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - Saanich Inlet SI074_LV_120m_DNA (SPAdes)	Environmental	Open in IMG/M
3300025626	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120531 (SPAdes)	Environmental	Open in IMG/M
3300025636	Marine microbial communities from expanding oxygen minimum zones in the Saanich Inlet - ESP_90LU_22_DNA (SPAdes)	Environmental	Open in IMG/M
3300025671	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Mar_4 (SPAdes)	Environmental	Open in IMG/M
3300025696	Pelagic Microbial community sample from North Sea - COGITO 998_met_02 (SPAdes)	Environmental	Open in IMG/M
3300025810	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Fall_30_>0.8_DNA (SPAdes)	Environmental	Open in IMG/M
3300025849	Pelagic marine microbial communities from North Sea - COGITO_mtgs_120607 (SPAdes)	Environmental	Open in IMG/M
3300026183	Salt pond water microbial communities from South San Francisco under conditions of wetland restoration - Salt Pond MetaG SF2_B_H2O_MG (SPAdes)	Environmental	Open in IMG/M
3300026260	Marine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV67 (SPAdes)	Environmental	Open in IMG/M
3300027906	Marine eukaryotic phytoplankton communities from Atlantic Ocean - Tropical Atlantic ANT8 Metagenome (SPAdes)	Environmental	Open in IMG/M
3300028190	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_1000m	Environmental	Open in IMG/M
3300028197	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_10m	Environmental	Open in IMG/M
3300028487	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2011_P26_2000m	Environmental	Open in IMG/M
3300028488	Marine microbial communities from Northeast Subartic Pacific Ocean, Canada - LP_J_2015_P26_1320m	Environmental	Open in IMG/M
3300031519	Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 0.2	Environmental	Open in IMG/M
3300031594	Marine microbial communities from Western Arctic Ocean, Canada - CB9_20m	Environmental	Open in IMG/M
3300031605	Marine microbial communities from Western Arctic Ocean, Canada - CB9_32.1	Environmental	Open in IMG/M
3300032011	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 60m 3416	Environmental	Open in IMG/M
3300032151	Marine microbial communities from Western Arctic Ocean, Canada - CB4_SCM	Environmental	Open in IMG/M
3300032277	Microbial mat bacterial communities from mineral coupon in-situ incubated in ocean water Damariscotta River, Maine, United States - 3-month pyrrhotite	Environmental	Open in IMG/M
3300032360	Ammonia-oxidizing marine archaeal communities from Monterey Bay, California, United States - M1 500m 34915	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
DelMOWin2010_100343657	3300000117	Marine	MADKKQFSVVLSYDVQKTFIVEAKDEDEAYQIAYNGEGEVDNEDWEYREHIETE
DelMOWin2010_100986763	3300000117	Marine	MADKKQFSVVLSYDVQKTFIVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV*
LPfeb09P261000mDRAFT_10087385	3300000250	Marine	LVKRMAKKKLKQFRVCLSFDVQKNIIVNAKDEEEAYDKAYAGEGEIDNVDYEFRDHIETEEI*
JGI24003J15210_100172374	3300001460	Marine	MADKKQFKIVLSYDVQKTFYVEAKDEDEAYDKALFGDGPLVDNEDWEYRDHIETEEV*
JGI24003J15210_100651822	3300001460	Marine	MADKKQFSVTMSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV*
JGI24004J15324_100711184	3300001472	Marine	MSGKKQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGEGEVDNEDWEYRDHIETEEV*
JGI25127J35165_10238242	3300002482	Marine	MAEEEKKAFKVVLSYDVQKTFYVEADNEDDAYDKAYNGYGEVEDEDWEYRDHIETEEV*
JGI26080J50196_10731921	3300003345	Marine	SVTLSYDVQKTFIVEAKDADEAYDIAYNGEGEVDNEDWEYREHIETEEV*
JGI26080J50196_10851692	3300003345	Marine	MADKLKQFSVVLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV*
Ga0065861_10313701	3300004448	Marine	MADKKQFSVVLSYDVQKTFIVEAKDADEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0066858_101058473	3300005398	Marine	CYQRSHRHHDKAFRRYEEKEGCLMSEKQFKVVLSYDVQKTFIVDAKNEEEAYDKAYDNWEGEDDDNWEFRDHIETEEI*
Ga0066863_100353651	3300005428	Marine	KEGCLMSEKQFKVVLSYDVQKTFIVDAKNEEEAYDKAYDNWEGEDDDNWEFRDHIETEEI
Ga0066849_100060591	3300005430	Marine	MPAYRIVLSYDVQKTFIVEAKNREEAYDKAYDNWEGEDNDDWEYRDHIETEEL
Ga0066831_100874712	3300005516	Marine	MSEKEKQFRVVLSYDVQKTFIVDAKNEEEAYDKAYDNWEGEDDDNWEFRDHIETEEI*
Ga0066850_100241173	3300005605	Marine	MAEKEKQFRVVLSYDVQKTFIVNAKNEDQAYDKAYDNWEGEDGDDWEYRDHIETEEI*
Ga0076923_1112997	3300005735	Marine	MADKLKQFSVVLSYDVQKTFIVEAKDEDEAYQIAYNGESPAADEDWEYREHIETEEV*
Ga0076924_106442010	3300005747	Marine	MKKYKIVLSYDVQKTFYVEAKEEDEAYDKAYNGEGLVMNEDWEYRDQIETEEL*
Ga0075108_100214282	3300005913	Saline Lake	MPGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0082019_10202385	3300006093	Marine	MSEKQFKVVLSYDVQKTFIVDAKNEEEAYDKAYDNWEGEDDDNWEFRDHIETEEI*
Ga0075441_102256321	3300006164	Marine	MSGKKQFSVVLSYDVQKTFIVEAKNEDEAYNMAYNGEGEVDNEDWEYREHIETEAV*
Ga0098038_10305513	3300006735	Marine	MSEKQFKVVLSFDVQKTIIVNAKDEDEAYDLAYAGEGEIDNVDYEFRDHIETEEV*
Ga0098048_12216533	3300006752	Marine	MAKKEKQFRVVLSYDVQKTFIVDAKNEEEAYDKAYDGEGSVMNEDWEYRDHIETEEV*
Ga0075477_1002925310	3300006869	Aqueous	KQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGEGEVDNEDWEYREHIETKEV*
Ga0075477_101527921	3300006869	Aqueous	KQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGGGEVDNEDWEYREHIETEEV*
Ga0075479_102191952	3300006870	Aqueous	MSDKKQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGEGEVDNEDWEYREHIETKEV*
Ga0075463_101031931	3300007236	Aqueous	QFSVTLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV*
Ga0075463_102962513	3300007236	Aqueous	GGIMADKKQFSVTLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV*
Ga0070747_12852912	3300007276	Aqueous	MADKLKQFSVTMSFDVQKTYLVEAKDADEAYQIAYNGEGEVENEDWE
Ga0070745_12978882	3300007344	Aqueous	MSDKKQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGGGEVDNEDWEYREHIETEEV*
Ga0070753_11422883	3300007346	Aqueous	YKMKKYKIVLSYDVQKTFYVEAKEEDEAYDKAYNGEGLVMNEDWEYRDQIETEEL*
Ga0102954_11949672	3300007778	Water	MADKKQFSVVLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV*
Ga0099850_10507863	3300007960	Aqueous	MADKKQFSVVLSYDVQKTFIVEAKDEDEAYQMAYNGEGEVDNEDWEYRDHIETEEV*
Ga0102960_11959482	3300009000	Pond Water	MADKLKQFSVTMSFDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV*
Ga0102963_11684503	3300009001	Pond Water	MADKLKQFSVVLSYDVQKTFIVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV*
Ga0102957_10430985	3300009027	Pond Water	MADKLKQFSVVLSFDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV*
Ga0114995_103058381	3300009172	Marine	MSGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0114994_107903781	3300009420	Marine	SGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0114997_107531042	3300009425	Marine	MSDKKQFSVVLSYDVQKTFIVEAKDADEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0115559_12215242	3300009438	Pelagic Marine	MADKLKQFSVVLSYDVQKTFIVEAKDEDEAYQIAYNGGGEVDNEDWEYREHIET
Ga0115560_11793552	3300009447	Pelagic Marine	MSGKKQFSVTMSYDVQKTFIVEAKDADEAYDIAYNGEGEVENEDWEYREHIETEEV*
Ga0115571_13082181	3300009495	Pelagic Marine	MADKKQFSVTLSYDVQKTFIVEAKDADEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0115564_102360902	3300009505	Pelagic Marine	MADKLKQFSVVLSYDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV*
Ga0115011_100345857	3300009593	Marine	VSKKQFRVVLSYDVQKTFIVNAKNEEEAYDKAYDNWEGEDDDNWEYRDHIETEEI*
Ga0115011_103094404	3300009593	Marine	MAEEHKGFRVVLSYDVQKTIYVEAENEEEAYEKAFDGEGDCENEDWEYRD
Ga0114914_10525381	3300009601	Deep Ocean	MSGKKQFSVVLSYDVQKTFIVEAKNEDEAYNIAYNGEGEVDNEDWEYREHI
Ga0115104_102824952	3300009677	Marine	MLGKSKKQFTVVLSYDVQKTWLVEAIDEDEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0115000_107452213	3300009705	Marine	EGSIMSGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV
Ga0115000_110186092	3300009705	Marine	MSDKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV*
Ga0129348_11547762	3300010296	Freshwater To Marine Saline Gradient	MSDKKQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGKGEVDNEDWEYREHIETEEV*
Ga0129342_12249421	3300010299	Freshwater To Marine Saline Gradient	MADKLKQFSVTISFDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV*
Ga0129324_101099932	3300010368	Freshwater To Marine Saline Gradient	MADKLKQFSVTMSFDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV*
Ga0129331_14486062	3300012524	Aqueous	MADKLKQFSVTMSFDVQKTYLVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV*
Ga0129353_11700402	3300012525	Aqueous	MADKKQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGKGEVDNEDWEYREHIETEEV*
Ga0180120_103646431	3300017697	Freshwater To Marine Saline Gradient	RVCEGQSNEHWGGGVMADKLKQFSVTMSFDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0181402_11470492	3300017743	Seawater	MADKKQFSVVLSYDVQKTWLVDAKDEDEAYEIAYNGEGEVDNEDWE
Ga0181410_11431973	3300017763	Seawater	IMADKKQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGEGEVDNEDWEYTDHIETEEV
Ga0181394_11523702	3300017776	Seawater	MADKKQFSVVLSYDVQKTWLVDAKDQDEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0181580_106043742	3300017956	Salt Marsh	MADKLKQFSVTMSFDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV
Ga0181563_102786231	3300018420	Salt Marsh	MADEHKGFKVVLSYDVQKTFYVEAENEDEAYDKAYAGEGEVENEDWE
Ga0211613_100032828	3300020353	Marine	VSEKQFKIVLSYDVQKTFIVDAKNEEEAYDKAYDGEGSVMNEDWEYRDHIETEEV
Ga0211554_1000089035	3300020431	Marine	MSGKKQFSVVLSYDVQKTFIVEARDEDEAYDIAYNGEGEVDNEDWEYRE
Ga0211576_105998892	3300020438	Marine	MLGKSKKQFTVVLSYDVQKTWLVEAIDEDEAYDIAYNGEGEVDNEDWEYREHIETEEV
Ga0211543_104973301	3300020470	Marine	VSEKQFKVVLSYDVQKTFIVNAKNEEEAYDKAYDNWEGEDDDNWEYRDHIETEEI
Ga0206683_103229381	3300021087	Seawater	MAKKEKQFKVVLSYDVQKTFIVDAKNDEEAYDKAYDNWEGETGTNWEYRDHIETEEI
Ga0213858_100573686	3300021356	Seawater	MAGEDKGFKVVLSYDVQKTFYVEAENKEKAYEKAYNGHGDVEDEDWTYIDHIETEEV
Ga0213863_100428923	3300021371	Seawater	MADKLKQFSVVLSYDVQKTFIVEAKDEDEAYQIAYNGESPAADEDWEYREHIETEEV
Ga0213865_1001112611	3300021373	Seawater	MADKLKQFSVVLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0222717_100836855	3300021957	Estuarine Water	MADKLKQFSVTMSFDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYR
Ga0222717_100884685	3300021957	Estuarine Water	MADKKQFSVVLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0222717_101166812	3300021957	Estuarine Water	MPSKKQFKVCLAFDVQKTFIVEAKDEDEAYDIAYNGEGEVDDEDWEYREHIETERI
Ga0222717_102961583	3300021957	Estuarine Water	MADKLKQFSVVLSFDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV
Ga0222718_100631665	3300021958	Estuarine Water	MADKLKQFSVVLSYDVQKTFIVEAKDEDEAFQIAYDGNADEPAVDEDWEYREHIETEEV
Ga0222718_101888171	3300021958	Estuarine Water	MPSKKQFKVCLAFDVQKTFIVEAKDEDEAYDIAYNGEGEVDDEDWEYREH
Ga0222718_102912251	3300021958	Estuarine Water	KQFSVVLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0222716_101682973	3300021959	Estuarine Water	MADTLKQFSVVLSFDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEV
Ga0222715_103212944	3300021960	Estuarine Water	SKKQFKVCLAFDVQKTFIVEAKDEDEAYDIAYNGEGEVDDEDWEYREHIETERI
Ga0222719_101483432	3300021964	Estuarine Water	MADKKQFSVVLSFDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0222719_102546984	3300021964	Estuarine Water	MADKLKQFSVTMSFDVQKTYLVEAKDADEAYQIAYNGEGEVENEDWEYREHIETEEV
Ga0222719_105277922	3300021964	Estuarine Water	MADKLKQFSVVLSFDVQKTYLVEAKDADEAYQIAYNGEGEVDNEDWEYREHIETEEVA
Ga0222719_105450161	3300021964	Estuarine Water	MADKLKQFSVVLSFDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWE
Ga0187827_102222534	3300022227	Seawater	MSEKQFKVVLSYDVQKTFIVDAKNEEEAYDKAYDNWEGEDDDNWEFRDHIETEEI
Ga0222632_10052759	3300022842	Saline Water	MPGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV
Ga0255783_101187561	3300022923	Salt Marsh	MAGEDKGFKVVLSYDVQKTFYVEAENEEEAYDKAYAGDGEVENEDWEYRD
Ga0255782_103195461	3300023105	Salt Marsh	MADEEHKAFKVVLSYDVQKTFYVEAENEDDAYDKAYAGDGEVEDENWEYRD
Ga0228651_10832902	3300024293	Seawater	MSGKKQFSVVMSYDVQKTFIVEAKDEDEAYDIAYNGEGEVDNEDWEYREHIE
Ga0209992_103983781	3300024344	Deep Subsurface	RRYEEKEGGLVSEKQFKIVLSYDVQKTFIVDAKNEEEAYDKAYDGEGSVMNEDWEYRDHIETEEI
Ga0244775_106622071	3300024346	Estuarine	MSGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREH
Ga0208666_10144414	3300025102	Marine	MSEKQFKVVLSFDVQKTIIVNAKDEDEAYDLAYAGEGEIDNVDYEFRDHIETEEV
Ga0209535_10528582	3300025120	Marine	MADKKQFKIVLSYDVQKTFYVEAKDEDEAYDKALFGDGPLVDNEDWEYRDHIETEEV
Ga0209535_11182591	3300025120	Marine	NRGGLMSSKKQFKVCLAFDVQKTFIVEAIDEDEAYDIAYNGEGEVDNEDWEYREHIETEE
Ga0209535_11425502	3300025120	Marine	MADKKQFSVTMSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0209348_10753643	3300025127	Marine	MAEEEKKAFKVVLSYDVQKTFYVEADNEDDAYDKAYNGYGEVEDEDWEYRDHIETEEV
Ga0209336_1000094020	3300025137	Marine	MSSKKQFKVCLAFDVQKTFIVEAIDEDEAYDIAYNGEGEVDNEDWEYREHIETEEA
Ga0209756_12283613	3300025141	Marine	MAGEDKGFKVVLSYDVQKTFIVDAKNEEEAYDKAYDNWEGEDDDNWEFRDHIETEEI
Ga0208814_11025373	3300025276	Deep Ocean	MSGKKQFSVVLSYDVQKTFIVEAKNEDEAYNMAYNGEGEVDNEDWEYREHIETEAV
Ga0209557_10732852	3300025483	Marine	MSGKKQFKVCLAFDVQKTFIVEAIDEDEAYDIAYNGEGEVDDEDWEYREHIETEEV
Ga0209716_10958061	3300025626	Pelagic Marine	MADKLKQFSVVLSYDVQKTFIVEAKDEDEAYQIAYNGEGEVDNEDWEYREHI
Ga0209136_11255311	3300025636	Marine	MSDKKQFSVTLSYDVQKTFIVEAKDADEAYDIAYNGEGEVDNEDWEYREHIETEEV
Ga0208898_11615381	3300025671	Aqueous	MKKYKIVLSYDVQKTFYVEAKEEDEAYDKAYNGEGLVMNEDWEYRDQIETEEL
Ga0209532_11298052	3300025696	Pelagic Marine	MADKLKQFSVVLSYDVQKTFIVEAKDEDEAYQIAYNGEGEVDNEDWEYREH
Ga0208543_10463685	3300025810	Aqueous	VVLSYDVQKTFIVEAKDEDEAYDIAYNGEGEVDNEDWEYREHIETKEV
Ga0209603_12024522	3300025849	Pelagic Marine	MADKLKQFSVVLSYDVQKTFIVEAKDEDEAYQIAYNGEGEVDNEDWEYRE
Ga0209932_10731603	3300026183	Pond Water	CIMADKKQFSVVLSYDVQKTFIVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0208408_10171783	3300026260	Marine	MAEKEKQFRVVLSYDVQKTFIVNAKNEDQAYDKAYDNWEGEDGDDWEYRDHIETEEI
Ga0209404_100094457	3300027906	Marine	VSKKQFRVVLSYDVQKTFIVNAKNEEEAYDKAYDNWEGEDDDNWEYRDHIETEEI
Ga0257108_10402732	3300028190	Marine	MAKKKLKQFRVCLSFDVQKNIIVNAKDEEEAYDKAYAGEGEIDNVDYEFRDHIETEEI
Ga0257110_100142510	3300028197	Marine	MSSKKQFKVCLAFDVQKTFIVEAIDEDEAYDIAYNGEGEVDNEDWEYREHIETEEV
Ga0257109_11184132	3300028487	Marine	MAKKLKEFKVVLSYDVQKTFIVDAKNEDEAQEKAIDWEGEISNKDDWEYRELIECEETNA
Ga0257113_11188692	3300028488	Marine	MKKKLKEFKVVLSYDVQKTFIVDAKNEDEAQEKAIDWEGEISNKDDWEYRELIECEETNA
Ga0307488_100866098	3300031519	Sackhole Brine	MADKKQFSVVLSYDVQKTFIVEAKDEDEAYDIAYNGEGEVDNEDWEYTDHI
Ga0307488_102796292	3300031519	Sackhole Brine	MSGKKQFSVVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV
Ga0302131_12869941	3300031594	Marine	VLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV
Ga0302132_103404832	3300031605	Marine	MSGKKQFSVVMSYDVQKTFIVEAKDEDEAYDIAYNGEGEVDNEDWEYREHI
Ga0315316_106475803	3300032011	Seawater	MSGKKQFSVVMSYDVQKTFIVEAKDEDEAYDIAYNGEGEVENEDWE
Ga0302127_101846173	3300032151	Marine	VVLSYDVQKTFIVEAKDQDEAYDIAYNGEGEVDNEDWEYREHIETEEV
Ga0316202_101413714	3300032277	Microbial Mat	MADKLKQFSVTMSFDVQKTYLVEAKDADEAYEIAYNGEGEVDNEDWEYREHIETEEV
Ga0315334_112041782	3300032360	Seawater	MAKKKLKQYRVCLSFDVQKNIIVNAKDEEEAYDKAYAGEGEIDNVDYEFRDHIETEEI

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome / Metatranscriptome Family F077787

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences