Metagenome Family F077822

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F077822
Family Type	Metagenome
Number of Sequences	117
Average Sequence Length	107 residues
Representative Sequence	MHARVWQLHLRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLLAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTSARAKA
Number of Associated Samples	62
Number of Associated Scaffolds	117

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Bacteria
% of genes with valid RBS motifs	76.92 %
% of genes near scaffold ends (potentially truncated)	23.93 %
% of genes from short scaffolds (< 2000 bps)	66.67 %
Associated GOLD sequencing projects	54
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.75

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Bacteria (58.120 % of family members)
NCBI Taxonomy ID	2
Taxonomy	All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil (22.222 % of family members)
Environment Ontology (ENVO)	Unclassified (60.684 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (70.085 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 33.09% β-sheet: 24.26% Coil/Unstructured: 42.65%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.75
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.75
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Structural matches with SCOPe domains

SCOP family	SCOP domain	Representative PDB	TM-score
d.58.4.17: SOR-like	d6m35a_	6m35	0.80649
d.58.4.18: YbaA-like	d2okqa1	2okq	0.78922
d.58.4.3: Actinorhodin biosynthesis monooxygenase ActVa-Orf6	d1lq9a_	1lq9	0.77862
d.58.4.5: PG130-like	d1iuja_	1iuj	0.74567
d.58.4.4: Plant stress-induced protein	d1tr0a_	1tr0	0.73164

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 117 Family Scaffolds
PF01740	STAS	21.37
PF03992	ABM	7.69
PF13174	TPR_6	4.27
PF07238	PilZ	3.42
PF00072	Response_reg	2.56
PF13181	TPR_8	2.56
PF14534	DUF4440	2.56
PF00069	Pkinase	2.56
PF12867	DinB_2	2.56
PF13432	TPR_16	1.71
PF00239	Resolvase	1.71
PF13561	adh_short_C2	0.85
PF02737	3HCDH_N	0.85
PF07786	HGSNAT_cat	0.85
PF09721	Exosortase_EpsH	0.85
PF14659	Phage_int_SAM_3	0.85
PF13545	HTH_Crp_2	0.85
PF14559	TPR_19	0.85
PF06537	DHOR	0.85
PF00589	Phage_integrase	0.85
PF10091	Glycoamylase	0.85
PF00324	AA_permease	0.85
PF00480	ROK	0.85
PF08352	oligo_HPY	0.85
PF05036	SPOR	0.85
PF00753	Lactamase_B	0.85
PF13676	TIR_2	0.85
PF02416	TatA_B_E	0.85
PF01070	FMN_dh	0.85
PF01433	Peptidase_M1	0.85
PF04892	VanZ	0.85

COG ID	Name	Functional Category	% Frequency in 117 Family Scaffolds
COG0515	Serine/threonine protein kinase	Signal transduction mechanisms [T]	10.26
COG1940	Sugar kinase of the NBD/HSP70 family, may contain an N-terminal HTH domain	Transcription [K]	1.71
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	1.71
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	1.71
COG0069	Glutamate synthase domain 2	Amino acid transport and metabolism [E]	0.85
COG0240	Glycerol-3-phosphate dehydrogenase	Energy production and conversion [C]	0.85
COG0287	Prephenate dehydrogenase	Amino acid transport and metabolism [E]	0.85
COG0308	Aminopeptidase N, contains DUF3458 domain	Amino acid transport and metabolism [E]	0.85
COG0531	Serine transporter YbeC, amino acid:H+ symporter family	Amino acid transport and metabolism [E]	0.85
COG0677	UDP-N-acetyl-D-mannosaminuronate dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG0833	Amino acid permease	Amino acid transport and metabolism [E]	0.85
COG1004	UDP-glucose 6-dehydrogenase	Cell wall/membrane/envelope biogenesis [M]	0.85
COG1113	L-asparagine transporter or related permease	Amino acid transport and metabolism [E]	0.85
COG1115	Na+/alanine symporter	Amino acid transport and metabolism [E]	0.85
COG1250	3-hydroxyacyl-CoA dehydrogenase	Lipid transport and metabolism [I]	0.85
COG1304	FMN-dependent dehydrogenase, includes L-lactate dehydrogenase and type II isopentenyl diphosphate isomerase	Energy production and conversion [C]	0.85
COG1748	Saccharopine dehydrogenase, NADP-dependent	Amino acid transport and metabolism [E]	0.85
COG1826	Twin-arginine protein secretion pathway components TatA and TatB	Intracellular trafficking, secretion, and vesicular transport [U]	0.85
COG2084	3-hydroxyisobutyrate dehydrogenase or related beta-hydroxyacid dehydrogenase	Lipid transport and metabolism [I]	0.85
COG3488	Uncharacterized conserved protein with two CxxC motifs, DUF1111 family	General function prediction only [R]	0.85
COG3503	Uncharacterized membrane protein, DUF1624 family	Function unknown [S]	0.85

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
All Organisms	root	All Organisms	58.12 %
Unclassified	root	N/A	41.88 %

Name	Rank	Taxonomy	Distribution
cellular organisms	root	All Organisms → cellular organisms	58.12 %
Unclassified	root	N/A	41.88 %

Name	Rank	Taxonomy	Distribution
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	58.12 %
Unclassified	root	N/A	41.88 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.88 %
Acidobacteria	phylum	All Organisms → cellular organisms → Bacteria → Acidobacteria	38.46 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.88 %
Acidobacteriia	class	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	11.11 %
unclassified Acidobacteria	no rank	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria	7.69 %
delta/epsilon subdivisions	subphylum	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.88 %
Acidobacteriales	order	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales	8.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Deltaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.88 %
Acidobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	8.55 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
unclassified Deltaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Edaphobacter	genus	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter	2.56 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.85 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	41.88 %
Acidobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	7.69 %
Edaphobacter lichenicola	species	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	2.56 %
Deltaproteobacteria bacterium RBG_13_43_22	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	0.85 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300001082\|JGI12664J13189_1003059	All Organisms → cellular organisms → Bacteria	1577	Open in IMG/M
3300001867\|JGI12627J18819_10128949	Not Available	1036	Open in IMG/M
3300001867\|JGI12627J18819_10213658	Not Available	778	Open in IMG/M
3300003352\|JGI26345J50200_1007054	Not Available	1106	Open in IMG/M
3300003352\|JGI26345J50200_1030875	All Organisms → cellular organisms → Bacteria	583	Open in IMG/M
3300003352\|JGI26345J50200_1037756	Not Available	538	Open in IMG/M
3300003370\|JGI26337J50220_1005523	Not Available	1493	Open in IMG/M
3300003505\|JGIcombinedJ51221_10002334	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	5166	Open in IMG/M
3300004080\|Ga0062385_10329455	Not Available	887	Open in IMG/M
3300004080\|Ga0062385_11171900	Not Available	524	Open in IMG/M
3300004082\|Ga0062384_100040630	Not Available	2180	Open in IMG/M
3300004082\|Ga0062384_100177283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1236	Open in IMG/M
3300004091\|Ga0062387_100107603	All Organisms → cellular organisms → Bacteria → Acidobacteria	1516	Open in IMG/M
3300004091\|Ga0062387_101422844	Not Available	553	Open in IMG/M
3300004092\|Ga0062389_102700809	Not Available	662	Open in IMG/M
3300005538\|Ga0070731_10098491	All Organisms → cellular organisms → Bacteria → Acidobacteria	1936	Open in IMG/M
3300005542\|Ga0070732_10876670	Not Available	548	Open in IMG/M
3300005591\|Ga0070761_10001548	All Organisms → cellular organisms → Bacteria → Acidobacteria	14399	Open in IMG/M
3300005591\|Ga0070761_10008025	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6023	Open in IMG/M
3300005591\|Ga0070761_10009116	All Organisms → cellular organisms → Bacteria	5637	Open in IMG/M
3300005591\|Ga0070761_10258597	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300006163\|Ga0070715_10861161	Not Available	555	Open in IMG/M
3300006176\|Ga0070765_100015977	All Organisms → cellular organisms → Bacteria → Acidobacteria	5457	Open in IMG/M
3300009038\|Ga0099829_10071947	All Organisms → cellular organisms → Bacteria	2624	Open in IMG/M
3300009088\|Ga0099830_10134545	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1885	Open in IMG/M
3300010343\|Ga0074044_10130180	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1688	Open in IMG/M
3300010343\|Ga0074044_10165579	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1476	Open in IMG/M
3300010361\|Ga0126378_10401990	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1482	Open in IMG/M
3300011269\|Ga0137392_10068263	All Organisms → cellular organisms → Bacteria	2728	Open in IMG/M
3300011271\|Ga0137393_10003223	All Organisms → cellular organisms → Bacteria	10583	Open in IMG/M
3300011271\|Ga0137393_10982503	Not Available	719	Open in IMG/M
3300012096\|Ga0137389_10410328	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1157	Open in IMG/M
3300012202\|Ga0137363_10739934	Not Available	833	Open in IMG/M
3300020579\|Ga0210407_10177320	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1651	Open in IMG/M
3300020579\|Ga0210407_10294720	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1266	Open in IMG/M
3300021171\|Ga0210405_10000218	All Organisms → cellular organisms → Bacteria → Acidobacteria	81357	Open in IMG/M
3300021171\|Ga0210405_10005783	All Organisms → cellular organisms → Bacteria	11191	Open in IMG/M
3300021171\|Ga0210405_10076347	All Organisms → cellular organisms → Bacteria → Acidobacteria	2640	Open in IMG/M
3300021181\|Ga0210388_10012002	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	6909	Open in IMG/M
3300021406\|Ga0210386_10174877	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1807	Open in IMG/M
3300021420\|Ga0210394_10000128	All Organisms → cellular organisms → Bacteria	184798	Open in IMG/M
3300021420\|Ga0210394_10953970	Not Available	745	Open in IMG/M
3300021420\|Ga0210394_11859482	Not Available	501	Open in IMG/M
3300021432\|Ga0210384_11233802	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	652	Open in IMG/M
3300021432\|Ga0210384_11770724	Not Available	523	Open in IMG/M
3300021474\|Ga0210390_11184044	All Organisms → cellular organisms → Bacteria → Acidobacteria	617	Open in IMG/M
3300021559\|Ga0210409_10186438	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1893	Open in IMG/M
3300022733\|Ga0224562_1007379	Not Available	859	Open in IMG/M
3300023030\|Ga0224561_1002488	All Organisms → cellular organisms → Bacteria	1269	Open in IMG/M
3300024227\|Ga0228598_1015283	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	1516	Open in IMG/M
3300024227\|Ga0228598_1019205	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter → Edaphobacter lichenicola	1347	Open in IMG/M
3300024271\|Ga0224564_1055234	Not Available	778	Open in IMG/M
3300026467\|Ga0257154_1000446	All Organisms → cellular organisms → Bacteria → Acidobacteria	4041	Open in IMG/M
3300026499\|Ga0257181_1080193	Not Available	566	Open in IMG/M
3300027050\|Ga0209325_1000902	All Organisms → cellular organisms → Bacteria	2354	Open in IMG/M
3300027071\|Ga0209214_1000246	All Organisms → cellular organisms → Bacteria → Acidobacteria	3339	Open in IMG/M
3300027370\|Ga0209010_1000546	All Organisms → cellular organisms → Bacteria → Acidobacteria	11766	Open in IMG/M
3300027371\|Ga0209418_1024947	Not Available	1017	Open in IMG/M
3300027729\|Ga0209248_10039071	Not Available	1471	Open in IMG/M
3300027729\|Ga0209248_10041085	All Organisms → cellular organisms → Bacteria	1431	Open in IMG/M
3300027737\|Ga0209038_10158745	Not Available	685	Open in IMG/M
3300027767\|Ga0209655_10000911	All Organisms → cellular organisms → Bacteria → Acidobacteria	11145	Open in IMG/M
3300027767\|Ga0209655_10001681	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	8035	Open in IMG/M
3300027767\|Ga0209655_10020492	Not Available	2224	Open in IMG/M
3300027767\|Ga0209655_10040543	All Organisms → cellular organisms → Bacteria → Acidobacteria	1561	Open in IMG/M
3300027767\|Ga0209655_10103986	Not Available	945	Open in IMG/M
3300027768\|Ga0209772_10019052	All Organisms → cellular organisms → Bacteria → Acidobacteria	1937	Open in IMG/M
3300027768\|Ga0209772_10028622	Not Available	1609	Open in IMG/M
3300027768\|Ga0209772_10071168	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia	1049	Open in IMG/M
3300027768\|Ga0209772_10152305	Not Available	725	Open in IMG/M
3300027783\|Ga0209448_10109303	All Organisms → cellular organisms → Bacteria	926	Open in IMG/M
3300027795\|Ga0209139_10011052	All Organisms → cellular organisms → Bacteria → Acidobacteria	3353	Open in IMG/M
3300027829\|Ga0209773_10001990	All Organisms → cellular organisms → Bacteria	7265	Open in IMG/M
3300027853\|Ga0209274_10003642	All Organisms → cellular organisms → Bacteria → Acidobacteria	7332	Open in IMG/M
3300027853\|Ga0209274_10005876	All Organisms → cellular organisms → Bacteria	5622	Open in IMG/M
3300027853\|Ga0209274_10010050	All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae	4261	Open in IMG/M
3300027853\|Ga0209274_10183952	All Organisms → cellular organisms → Bacteria	1060	Open in IMG/M
3300027895\|Ga0209624_10337508	All Organisms → cellular organisms → Bacteria	1004	Open in IMG/M
3300031057\|Ga0170834_110476935	Not Available	968	Open in IMG/M
3300031231\|Ga0170824_103285493	Not Available	727	Open in IMG/M
3300031708\|Ga0310686_102255199	All Organisms → cellular organisms → Bacteria → Acidobacteria	9367	Open in IMG/M
3300031708\|Ga0310686_102916343	Not Available	2794	Open in IMG/M
3300031708\|Ga0310686_104117041	Not Available	927	Open in IMG/M
3300031708\|Ga0310686_104971233	Not Available	1124	Open in IMG/M
3300031708\|Ga0310686_107722267	All Organisms → cellular organisms → Bacteria	1041	Open in IMG/M
3300031708\|Ga0310686_108123009	Not Available	607	Open in IMG/M
3300031708\|Ga0310686_110724612	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	1474	Open in IMG/M
3300031708\|Ga0310686_113510413	All Organisms → cellular organisms → Bacteria → Acidobacteria	644	Open in IMG/M
3300031708\|Ga0310686_116540855	All Organisms → cellular organisms → Bacteria	2152	Open in IMG/M
3300031708\|Ga0310686_117315970	All Organisms → cellular organisms → Bacteria → Acidobacteria	1384	Open in IMG/M
3300031715\|Ga0307476_10287510	Not Available	1204	Open in IMG/M
3300031715\|Ga0307476_10399676	All Organisms → cellular organisms → Bacteria → Acidobacteria	1015	Open in IMG/M
3300031715\|Ga0307476_11314556	Not Available	527	Open in IMG/M
3300031718\|Ga0307474_10006885	All Organisms → cellular organisms → Bacteria	8197	Open in IMG/M
3300031718\|Ga0307474_10031317	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	3901	Open in IMG/M
3300031718\|Ga0307474_10116224	Not Available	2006	Open in IMG/M
3300031718\|Ga0307474_10399653	Not Available	1069	Open in IMG/M
3300031720\|Ga0307469_10023121	Not Available	3432	Open in IMG/M
3300031720\|Ga0307469_10056295	Not Available	2509	Open in IMG/M
3300031720\|Ga0307469_10285623	Not Available	1350	Open in IMG/M
3300031753\|Ga0307477_10074476	All Organisms → cellular organisms → Bacteria → Acidobacteria	2348	Open in IMG/M
3300031753\|Ga0307477_10191459	All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium RBG_13_43_22	1424	Open in IMG/M
3300031753\|Ga0307477_10366429	Not Available	990	Open in IMG/M
3300031754\|Ga0307475_10100842	All Organisms → cellular organisms → Bacteria → Acidobacteria	2253	Open in IMG/M
3300031754\|Ga0307475_10108063	All Organisms → cellular organisms → Bacteria	2179	Open in IMG/M
3300031823\|Ga0307478_10004297	All Organisms → cellular organisms → Bacteria	10202	Open in IMG/M
3300031823\|Ga0307478_10788417	All Organisms → cellular organisms → Bacteria → Acidobacteria	796	Open in IMG/M
3300031962\|Ga0307479_10022365	All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium	5983	Open in IMG/M
3300031962\|Ga0307479_10558434	Not Available	1127	Open in IMG/M
3300031962\|Ga0307479_11198084	Not Available	723	Open in IMG/M
3300031962\|Ga0307479_11735464	Not Available	577	Open in IMG/M
3300032180\|Ga0307471_101097590	Not Available	961	Open in IMG/M
3300032180\|Ga0307471_102354289	Not Available	672	Open in IMG/M
3300032205\|Ga0307472_100140754	Not Available	1744	Open in IMG/M
3300032205\|Ga0307472_100564538	All Organisms → cellular organisms → Bacteria → Acidobacteria	996	Open in IMG/M
3300032515\|Ga0348332_11158555	Not Available	581	Open in IMG/M
3300032515\|Ga0348332_13189388	Not Available	832	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	98.29%
Host-Associated	Host-Associated	1.71%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	76.07%
Aquatic	Environmental → Aquatic	22.22%
Plants	Host-Associated → Plants	1.71%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	74.36%
Freshwater	Environmental → Aquatic → Freshwater	22.22%
Plant Litter	Environmental → Terrestrial → Plant Litter	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere	1.71%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	56.41%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	22.22%
Loam	Environmental → Terrestrial → Soil → Loam	16.24%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	1.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	1.71%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	36.75%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	22.22%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	19.66%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	15.38%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	1.71%
Unclassified	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified	1.71%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	1.71%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.85%

Habitat	Taxonomy	Distribution
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	22.22%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	21.37%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.68%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	11.11%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	7.69%
Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Soil	7.69%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	5.98%
Surface Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil	1.71%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	1.71%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	1.71%
Plant Litter	Environmental → Terrestrial → Plant Litter → Unclassified → Unclassified → Plant Litter	1.71%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	1.71%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	0.85%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.85%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300001082	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3	Environmental	Open in IMG/M
3300001867	Texas A ecozone_OM1H0_M2 (Combined assembly for Texas A ecozone Site metagenome samples, ASSEMBLY_DATE=20130705)	Environmental	Open in IMG/M
3300003352	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1	Environmental	Open in IMG/M
3300003370	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2	Environmental	Open in IMG/M
3300003505	Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004082	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300005538	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen03_05102014_R1	Environmental	Open in IMG/M
3300005542	Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1	Environmental	Open in IMG/M
3300005591	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1	Environmental	Open in IMG/M
3300006163	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG	Environmental	Open in IMG/M
3300006176	Warmed and freeze-thawed soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire - Hubbard Brook CCASE Soil Metagenome WFT 5	Environmental	Open in IMG/M
3300009038	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H2.8 metaG	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010361	Tropical forest soil microbial communities from Panama - MetaG Plot_23	Environmental	Open in IMG/M
3300011269	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4A metaG	Environmental	Open in IMG/M
3300011271	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h3.4B metaG	Environmental	Open in IMG/M
3300012096	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h1.4B metaG	Environmental	Open in IMG/M
3300012202	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_115_16 metaG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300021171	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-M	Environmental	Open in IMG/M
3300021181	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-O	Environmental	Open in IMG/M
3300021406	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-32-O	Environmental	Open in IMG/M
3300021420	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-12-M	Environmental	Open in IMG/M
3300021432	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-M	Environmental	Open in IMG/M
3300021474	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O	Environmental	Open in IMG/M
3300021559	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-17-M	Environmental	Open in IMG/M
3300022733	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU3	Environmental	Open in IMG/M
3300023030	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU2	Environmental	Open in IMG/M
3300024227	Spruce rhizosphere microbial communities from Bohemian Forest, Czech Republic - CZU4	Host-Associated	Open in IMG/M
3300024271	Soil microbial communities from Bohemian Forest, Czech Republic ? CSU5	Environmental	Open in IMG/M
3300026467	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-16-A	Environmental	Open in IMG/M
3300026499	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-06-B	Environmental	Open in IMG/M
3300027050	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027071	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM1H0_M2 (SPAdes)	Environmental	Open in IMG/M
3300027370	Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM1_O3 (SPAdes)	Environmental	Open in IMG/M
3300027371	Forest soil microbial communities from Davy Crockett National Forest, Groveton, Texas, USA - Texas A ecozone_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027737	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027767	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027768	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP03_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027795	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM3 (SPAdes)	Environmental	Open in IMG/M
3300027829	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027853	Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)	Environmental	Open in IMG/M
3300027895	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_O1 (SPAdes)	Environmental	Open in IMG/M
3300031057	Oak Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031715	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_05	Environmental	Open in IMG/M
3300031718	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031753	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM2C_515	Environmental	Open in IMG/M
3300031754	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_515	Environmental	Open in IMG/M
3300031823	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032180	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM3C_515	Environmental	Open in IMG/M
3300032205	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05	Environmental	Open in IMG/M
3300032515	FICUS49499 Metatranscriptome Czech Republic combined assembly (additional data)	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI12664J13189_10030592	3300001082	Forest Soil	MHARVWQLHLRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLELMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFITASARAKA*
JGI12627J18819_101289491	3300001867	Forest Soil	MPAHVWQLHVRPCMVQDFKEILSSLVELAREQDGYRGIVALSSGKSESPDVTLIALWDSLEAIRASENSLFLTQAISRFLVCCDGLPHITEQNLLASDFIAISAPAKA*
JGI12627J18819_102136582	3300001867	Forest Soil	MHARVWQLHLRPGMVQDFRAILSSLVELARLQDGYRGIVALASGKSESPDVTLVALWDSLEAIRVSENNLFLTHAIARYQTCCKGFPHITVQQLLASDFITTSFSAKA*
JGI26345J50200_10070542	3300003352	Bog Forest Soil	MHARVWQLHLRSGXVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLIALWDSVEAIRTSENNLFLTQAISLFLACCEGLPHITEQEVLASDLITASVRAKT*
JGI26345J50200_10308751	3300003352	Bog Forest Soil	VPLGEEEHLFFAHGTWEDGMHARVWQLQIRSGKLRDFQTILSSVIELARQQGGYRGVFAWASGKLESPEVTLVAIWDSLGAIRASENNLFLTEAISRFLACCEGLPHISEREFLASDFIAASARAKA*
JGI26345J50200_10377561	3300003352	Bog Forest Soil	MHARVWQLQIRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTVVALWDSLQVIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDLITASVRAKT*
JGI26337J50220_10055231	3300003370	Bog Forest Soil	MHARVWQLHLRSGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLIALWDSVEAIRTSENNLFLTQAISLFLACCEGLPHITEQEVLASDLITASVRAKT*
JGIcombinedJ51221_100023348	3300003505	Forest Soil	MHARVWQLHLRSGKVQDFQDTLSSVVELARQQGGYRGVFALASGKSESPEVTLVALWDSLLAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTSARAKA*
Ga0062385_103294551	3300004080	Bog Forest Soil	MNARVWKFHIRPGKVQDFQDILSSVIELARQQEGYRGGVALASGKLESPEVTLVALWNSLGAMRASENNLFLTQAISRFLVCCDGVPHITEQEVLASDFIATSARAKA*
Ga0062385_111719001	3300004080	Bog Forest Soil	MHARVWQLQISTGKLRDFQTILSSVIELAREQGGYRGVFAWASGKLESPEVTLVAIWDSLEAVRASENNLFLTDVISRFLACCEGLPHIS
Ga0062384_1000406302	3300004082	Bog Forest Soil	MHARVWRFHIRPGKVQDFQGILSSVIDLAHHQGGYRGGVALASSGSESPEVTLVALWDSLEAMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIATGARAKA*
Ga0062384_1001772832	3300004082	Bog Forest Soil	MHARVWQLQISTGKLRDFQTILSSVIELAREQGGYRGVFAWASGKLESPEVTLVAIWDSLEAVRASENNLFLTDVISRFLACCEGLPHISEREFLASDFIVASARAKA*
Ga0062387_1001076034	3300004091	Bog Forest Soil	LQIRSGKLRDFQTILSSVIELARQQGGYRGVFAWASGKLESPEVTLVAIWDSLGAIRASENNLFLTEAISRFLACCEGLPHISEREFLASDFIAASARAKA*
Ga0062387_1014228442	3300004091	Bog Forest Soil	MHARVWQLQIRTGKVRDFQAILSSVIDLARQQGGYRGVLAFASGKSEAPDVTVVALWDSLQAMRASENNLFLTDTIARYLACCEGLPHITEQEILASDLITASARAKA*
Ga0062389_1027008092	3300004092	Bog Forest Soil	MHARVWQLQIRLGKLQDFQGILSSVIDLARQQEGYRGGVALASGKSESPEVTLIALWDSLVAMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTTSRAKA*
Ga0070731_100984913	3300005538	Surface Soil	MHARLWQLHIRPGMVLDFQNILSSVVELARQQDGYLGVLALASGKSDSPDITLVAVWNSMETIRASENNLFLTHAIARYQTCCEGFPHITVQELLPSDFIATIARAKA*
Ga0070732_108766702	3300005542	Surface Soil	MHARVWQLHIRLGKVQDFQVILSSVVDLARQQKGYRGVLALASGKSESPDVNLVALWDSLEAIRASENNLFLTQAISRFLACCEGLPHITEQELLASDFIATSAQAKA*
Ga0070761_1000154817	3300005591	Soil	MHARVWQLHLRPGKVQDFQDTLSSLVDLARQQGGYRGVFALASGKSESPEVTLVALWDSFQAVRASENNLFLTQAISRFLACCEGLPHITEHEILASDLIAASARAKV*
Ga0070761_100080253	3300005591	Soil	MNARVWQFHIRPGKVQDFQNILSSVIDLARQQEGYRGGVALGPGKSESPEVTLVALWDSFELMRASENSLFLTQAISRFLACCEGLPHITEQEVLASDFIATSARAKA*
Ga0070761_100091162	3300005591	Soil	MHARVWQLQIRTGKLRDFQTILGSVIELAREQGGYRGVFAWASGKLESPEVTLVAIWDSLEAIRASENNLFLTEVISRFLACCEGLPHISEREFLASDFIAASARAKA*
Ga0070761_102585972	3300005591	Soil	MHARVWQLHLRSGKVQDFQDTMSSVVDLARQQGGYRGVFALASGKSESPEVTVVALWDSLQAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDLITSSARAKA*
Ga0070715_108611611	3300006163	Corn, Switchgrass And Miscanthus Rhizosphere	MHARVWQLHLRPGMVQDFQHILSSLVELARQQDGYRGVLALGFGKSESPDVTLVGLWDSLDAMRASEDNLFLTQAIARFLACSDGFP
Ga0070765_1000159773	3300006176	Soil	VSELLCRKWRLGVAPRGRGPPPLSTDETQKDSLHARVWQLHIRPGKAPDFKDTLSSVVHLARQQEGYRGALSLCSGKSHSPDVTLVAPWDSLEKIRGSENNLFLTEEISRYLVCCEGLSHITVQELLACDFIATSPRAI*
Ga0099829_100719474	3300009038	Vadose Zone Soil	MPLNVVDLSTTEDAMHARVWQLHIRPGKVQDFQNILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIHATENNLFLTQAIARFLVCCEGLPQITEQELLASDLIATSARAKA*
Ga0099830_101345453	3300009088	Vadose Zone Soil	MPLNVVDLCTTEDAMHARVWQLHLRPGKVQDFHNILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIHATENNLFLTQAIARFLVCCEGLPQITEQELLASDLIATSARAKA*
Ga0074044_101301802	3300010343	Bog Forest Soil	MHARVWQLQIRPGKLQDFQGILSSVIDLARQQAGYRGGVALASGKSESPEVTLVALWESLEAMRASENNLFLTQAISRFLACCEGLPHITEQKVLASDFIATGARAKT*
Ga0074044_101655792	3300010343	Bog Forest Soil	MHARVWQLQIRTGKVQDFQTILSSVVDLARQQKGFRGVLALASGKSEAPEVTVVVLWDSLQAIRATENNLFLTAAISRYLPCCEGLPHITEQEVLASDFIAASARARA*
Ga0126378_104019901	3300010361	Tropical Forest Soil	QDFHSILSSLVALARQQEGYRGVLALAPVKSEAPDVTLVALWDSLAAMRASENNLFLTQAISRFLVCCEGLPHITEQELLASDFIATSVRAGA*
Ga0137392_100682631	3300011269	Vadose Zone Soil	MPLNVVDLSTTEDAMHARVWQLHLRPGKVQDFQNILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIHATENNLFLTQAIARFLVCCEGLPQITEQELLASDLIATSARAKA*
Ga0137393_1000322312	3300011271	Vadose Zone Soil	MPLNVVDLSTTEDAMHARVWQLHLRPGKVQDFHNILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIHATENNLFLTQAIARFLVCCEGLPQITEQELLASDLIATSARAKA*
Ga0137393_109825032	3300011271	Vadose Zone Soil	MPLNVADLCTTEDAMHARVWQLHIRPGKVQDFQDILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIRATENNLFLTQAIARFLVCCEGLPHITEQELLASDLIATSARAIA*
Ga0137389_104103282	3300012096	Vadose Zone Soil	MPLNVVDLCTTEDAMHARVWQLHIRPGKVQDFHNILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIHATENNLFLTQAIARFLACCEGLPHITEQELLASDLIATSARAKA*
Ga0137363_107399342	3300012202	Vadose Zone Soil	MVQDFQEILSSLVELARQQDGYRGVLALASGKSESPDVTLVALWDSLEAIRASENSLFLTQAISRFLVCCEGLPHIMEQDLLTSDFIATSARAKA*
Ga0210407_101773201	3300020579	Soil	MPLNVVDLSTTEDAMHARVWQLHIRPGKVQDFQNILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIHATENNLFLTQAIARFLVCCEGLPQITEQELLASDLIATSARAKA
Ga0210407_102947202	3300020579	Soil	MHARVWQLHLRSGKVQDFQDTLSSVVELARQQGGYRGVFALASGKSESPEVTLVALWDSLLAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTSARAKA
Ga0210405_1000021819	3300021171	Soil	MHARVWQLHLRSGKVQVFEDTLSSVVDLARRQGGYRGVFALASGKSESPEVTLVALWDSLEAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTSARAKA
Ga0210405_100057835	3300021171	Soil	MVRDFQNILSSVVELARQQDGYRGIVALASGKSESPDVTLAALWDSLEAIRASENSLFLTQAISRFLGCCEGLPHIMEQELFASDFIATSARAI
Ga0210405_100763476	3300021171	Soil	MHARLWQLHIRPGMVLDFQNILSSVVELARQQDGYLGVLALASGKSDSPDIILVAVWNSMETIRASENNLFLTHAIARYQTCCEGFPHITVQELLPSDFIATIARAKA
Ga0210388_100120022	3300021181	Soil	MHARVWQLHLRSGKVQDFQDTLSSVVELARQQGGYRGVFALASGKSETPEVTLVALWDSLQAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTSARAKA
Ga0210386_101748771	3300021406	Soil	MHARVWQLHLRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLLAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTSARAKA
Ga0210394_10000128116	3300021420	Soil	MHARVWQLHLRSGKVQDFQDTLSSVVELARQQGGYRGVFALASGKSESPEVTLVALWESLLAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTSARAKA
Ga0210394_109539702	3300021420	Soil	MHARLWQLHLRPGMVQDFRDILSSLVELARLQEGYRGVLALASGKSESPDVTLVALWDSLETIRASENNLFLTEAISRYLVCCQGLPHITVQELLASDFIATSARAKA
Ga0210394_118594821	3300021420	Soil	MHARLWQLHIRPGMVQDFRDIVSSLIELARLQDGYRGALALCSGKSDSPDVILVALWDSLETIRASENNLFLTEAISRYLVCCEGLPHITVQ
Ga0210384_112338021	3300021432	Soil	MHARVWQLQIRPGKVQDFQITVSSVADLARQQVGYRGVLALSSGKSESPDVTLVALWDSLEAIRASENNLFLTEAISRYLTCCKGLPHITEQGFLASDFIATSFWAEA
Ga0210384_117707242	3300021432	Soil	QDFRDILSSLVELAREQDGYRGVLALASGKSESPDVTLVALWDSLEAIRASENNLFLTQAISRFLACCEGLPHIMEQELLTSNFVATSARAI
Ga0210390_111840442	3300021474	Soil	ARLWQLHIRPGMVLDFQNILSSVMELAREQDGYLGVLALASGKSDSPDIILVAVWNSMETIRASENNLFLTHAIARYQTCCEGFPHITVQELLPSDFIATIARAKA
Ga0210409_101864381	3300021559	Soil	QDTLSSVVELARQQGGYRGVFALASGKSESPEVTLVALWDSLLAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIGTSARAKA
Ga0224562_10073792	3300022733	Soil	MHARVWQLQIRPGKVQDFRGILSSVIDLARQQGGYRGGVAMASGKSESPEVTLVALWDSLVAMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIATSARAKA
Ga0224561_10024881	3300023030	Soil	MHARVWQLQIRPGKVQDFRGILSSVIDLARQQGGYRGGVAMASGKSESPEVTLVALWDSLQAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIASSARAKGWLLLF
Ga0228598_10152832	3300024227	Rhizosphere	MHARVWQLQIRLGKLQDFQGILSSVIDLARQHEGYRGGVALASGKSESPEVTLVALWDSLVAMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIVTSARAIKSVLGDTQGRRRHKIG
Ga0228598_10192052	3300024227	Rhizosphere	MHARVWQLQIRSGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLVAMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIATSARAKA
Ga0224564_10552341	3300024271	Soil	ILSVRITEDALHARVWQLHLRPDKVQDFRTVLSPVDDLARKQGGYRGVFAWASGTSESPEVTLVAIWDSVEAIRASENNLFLTEAISRYLACCRGLPHISEREFLASEYVATGARANA
Ga0257154_10004464	3300026467	Soil	MHARVWQLQIRPGKVQDFQGILSSVIDLARQQEGYRGGVALASGKSESPEVTLVALWDSLQAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDLIATSARAKA
Ga0257181_10801931	3300026499	Soil	FQNILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIHATENNLFLTQAIARFLVCCEGLPQITEQELLASDLIATSARAKA
Ga0209325_10009021	3300027050	Forest Soil	MHARLWQLHLRPGMVQDFQHILSSLVELARQQDGYRGVLALGFGKSESPDVTLVGLWDSLDAMRASEDNLFLTQAIARFLACSDGFPHITEQELLASDFIATSASAKA
Ga0209214_10002466	3300027071	Forest Soil	MHARVWQLHLRPGKVQDFQNILSSLVELARQQDGYRGVLALGFGKSESPDVTLVGLWDSLDAMRASEDNLFLTQAIARFLACSDGFPHITEQELLASDFIATSARAKA
Ga0209010_10005461	3300027370	Forest Soil	MHARVWQLHLRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLELMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFITASARAKA
Ga0209418_10249472	3300027371	Forest Soil	MHARVWQLHLRPGMVQDFRAILSSLVELARLQDGYRGVLALASGKSESPDVTLVALWDSLDAMRASEDNLFLTQAIARFLACSDGFPHITEQELLASDFIATSARAKA
Ga0209248_100390711	3300027729	Bog Forest Soil	MHARVWQLQIRSGKLQDFQNILSSVIDLARQQEGYRGGVALASGKSESPEVTLVALWDSLEAIRASENNLFLTQAISRFLACCEGLPHISEQEVLASDFIATSARAKA
Ga0209248_100410853	3300027729	Bog Forest Soil	MHARVWQLQIRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLQEIRTSENNLFLTQAISRFLACCEGLPHITEQEVLASDLITASVRAKT
Ga0209038_101587452	3300027737	Bog Forest Soil	MHARVWQLHLRSGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLIALWDSVEAIRTSENNLFLTQAISLFLACCEGLPHITEQEVLASDLITASVRAKT
Ga0209655_100009115	3300027767	Bog Forest Soil	MHARVWQLQIRSGKLRDFQTILSSVIELARQQGGYRGVFAWASGKLESPEVTLVAIWDSLGAIRASENNLFLTEAISRFLACCEGLPHISEREFLASDFIAASARAKA
Ga0209655_100016817	3300027767	Bog Forest Soil	MHARVWQLQIRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTVVALWDSLQVIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDLITASVRAKT
Ga0209655_100204922	3300027767	Bog Forest Soil	MHARVWRFHIRPGKVQDFQGILSSVIDLAHHQGGYRGGVALASSGSESPEVTLVALWDSLEAMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIATGARAKA
Ga0209655_100405433	3300027767	Bog Forest Soil	RMQDFQDVFSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLQAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFITASARAKA
Ga0209655_101039863	3300027767	Bog Forest Soil	AMHARVWQLHLRSGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTVVALWDSLQSIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDLITASARAKA
Ga0209772_100190521	3300027768	Bog Forest Soil	MHARVWQLQIRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLQAIRTSENNLFLTQAISRFLACCEGLPHITEQEVLASDFVATTARARA
Ga0209772_100286221	3300027768	Bog Forest Soil	MHARVWQLHLRSGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLIALWDSVEAIRTSENNLFLTQAISLFLACCEGLPHITEQEVLASDLITASVRA
Ga0209772_100711682	3300027768	Bog Forest Soil	MHARVWQLQISTGKLRDFQTILSSVIELARQQGGYRGVFAWASGKLESPEVTLVAIWDSLGAIRASENNLFLTEAISRFLACCEGLPHISEREFLASDFIAASARAKA
Ga0209772_101523051	3300027768	Bog Forest Soil	LNVVSLCTTEDAMHARVWQLQIRSGKLQDFQNILSSVIDLARQQEGYRGGVALASGKSESPEVTLVALWDSLEAIRASENNLFLTQAISRFLACCEGLPHISEQEVLASDFIATSARAKA
Ga0209448_101093032	3300027783	Bog Forest Soil	AMHARVWQLQIRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTVVALWDSLQVIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFITASARAKA
Ga0209139_100110523	3300027795	Bog Forest Soil	MHARVWQLQIRTGKVRDFQAILSSVIDLARQQGGYRGVLAFASGKSEAPDVTVVALWDSLQAMRASENNLFLTDTIARYLACCEGLPHITEQEILASDLITASARAKA
Ga0209773_100019905	3300027829	Bog Forest Soil	MHARVWQLQIRPGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSLQAIRTSENNLFLTQAISRFLACCEGLPHITEQEVLASDLITASVRAKT
Ga0209274_100036423	3300027853	Soil	MNARVWQFHIRPGKVQDFQNILSSVIDLARQQEGYRGGVALGPGKSESPEVTLVALWDSFELMRASENSLFLTQAISRFLACCEGLPHITEQEVLASDFIATSARAKA
Ga0209274_100058768	3300027853	Soil	MHARVWQLQIRTGKLRDFQTILGSVIELAREQGGYRGVFAWASGKLESPEVTLVAIWDSLEAIRASENNLFLTEVISRFLACCEGLPHISEREFLASDFIAASARAKA
Ga0209274_100100504	3300027853	Soil	MHARVWQLHLRPGKVQDFQDTLSSLVDLARQQGGYRGVFALASGKSESPEVTLVALWDSFQAVRASENNLFLTQAISRFLACCEGLPHITEHEILASDLIAASARAKV
Ga0209274_101839522	3300027853	Soil	MHARVWQLHLRSGKVQDFQDTMSSVVDLARQQGGYRGVFALASGKSESPEVTVVALWDSLQAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDLITSSARAKA
Ga0209624_103375082	3300027895	Forest Soil	MHARVWQLHLRSGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPEVTLVALWDSFQAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFISAGARVKA
Ga0170834_1104769352	3300031057	Forest Soil	MPAHVWQLHVRPGKVQESQAILSSLIELAREQGGYRGIVALASGKSESPDVTLVALWDSLEAIRASENNLFLTQAISRFLVCCEGLPHIMEQELLTSDFIATSARAKA
Ga0170824_1032854931	3300031231	Forest Soil	HVRSGKVQEFQAILSSLIALAREQGGYRGIVALASGKSESPDVTLVALWDSLEAIRASENSLFLTQAISRFLVCCEGLPHIMEQELLTSDFIATSARAKA
Ga0310686_1022551994	3300031708	Soil	MNARVWQFHIRPGKAQDFQAILSSVIDLARQQQGYRGGVALASGKSESPEVTLVALWDSFEAMRASENNLFLTQAISRFLACCEGLPHIIEQKVLASDFIATGARAKT
Ga0310686_1029163434	3300031708	Soil	LHARVWQLHLRPDKVQDFRTVLSPVDDLARKQGGYRGVFAWASGTSESPEVTLVAIWDSVEAIRASENNLFLTEAISRYLACCRGLPHISEREFLASEYVATGARANA
Ga0310686_1041170412	3300031708	Soil	MYARVWQLHLRSGKVQDFQDTLSSVVDLARQQGGYRGVFALASGKSESPDVTVVALWDSLQAIRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIATGARAKA
Ga0310686_1049712332	3300031708	Soil	MHARVWQLHLRPGKVQDFQDTMSSVVDLARQQGGYRGVFALASGKSESPEVTVVALWDSLQSIRASENNLFLTQTISRFLACCEGLPHITEQEVLASDLIAASTRAKA
Ga0310686_1077222673	3300031708	Soil	FQNILSSVIDLARQQEGYRGGVALGPGKSESPEVTLVALWDSLELMRASENNLFLTQAISRFLACCEGLPHITEHEVLASDFIAASARAKA
Ga0310686_1081230092	3300031708	Soil	MNARVWQFHIRPGKVQDFQNILSSVIDLARQQEGYRGGVALGPGKSESPEVTLVALWDSLELMRASENNLFLTQAISRFLACCVGLPHITEHEVLASDFIAASARAKA
Ga0310686_1107246122	3300031708	Soil	MHARVWQLQIRLGKLQDFQGILSSVIDLARQQEGYRGGVALASGKSESPEVTLVALWDSLVAMRASENNLFLTQAISRFLACCEGLPHITEQEVLASDFIVTSARAIKSVLGDTQGRRRHKIG
Ga0310686_1135104131	3300031708	Soil	GKVQEFQEIFSSVVDLARQQGGYRGALALASGRSTSPEVNLVALWDSVEAMRASESNLFLTQAISRFLACSQGLPHITEQEVLASDFVATTARAKA
Ga0310686_1165408554	3300031708	Soil	MHARVWQLQIRTGKLRDFQTILASVIELAREQGGYRGVFAWASGKLDSPEVTLVAIWDSLEAIRASENNLFLTEAISRYLACCEGLPHISERELLASEFIATSARAKA
Ga0310686_1173159702	3300031708	Soil	MNARVWQLHLSPGKVQEFQEIFSSVVDIARQQGGYRGALALASGRSASPKVSLVALWDSLEAMRASESNLFLTQAISRFLTCSEGLPHITEQEVLASDFVATGARAKA
Ga0307476_102875102	3300031715	Hardwood Forest Soil	VRPGRVQDFQDVFSSVVDLARRQGGYRGVLALASGKPESPDVTVVALWDSLEAIRASENNLFLTQAISRFLACCDGLPHITEQELLASDFIATSVRAKA
Ga0307476_103996761	3300031715	Hardwood Forest Soil	QEDAMPAHVWQLHVRPGKVQDFQAILSSLIELAREQGGYRGVLALASGKSESPDVTLVALWDSLDAMRASENNLFLTEAISRYLVCCEGLPHIMEQELLACDFIATSARAKA
Ga0307476_113145562	3300031715	Hardwood Forest Soil	MHARLWQLHIRPGMVLDFQNILSSVVELARQQDGYLGVLALASGKSDSPDITLVAVWNSMETIRASENNLFLTHAIARYQTCCEGFPHI
Ga0307474_100068857	3300031718	Hardwood Forest Soil	MHARVWQLQIRPGKVQDFQVTVSSVADLARRQGGYRGVLALSSGKSESLDVTLVALWDSLQAIRDSENNLFLTEAISRYLTCCKGLPHITEQGFLASDFIATRARAL
Ga0307474_100313177	3300031718	Hardwood Forest Soil	LLGKDWLFGVPFWEEEHPFFFVHETQEDSTPAHVWQLHVRAGKVQDFQAILSSLIELAREQGGYRGVLALASGKSESPDVTLVALWDSLDAMRASENNLFLTEAISRYLVCCEGLPHIMEQELLACDFIATSARAKA
Ga0307474_101162244	3300031718	Hardwood Forest Soil	MHARVWQLHLRPGMVLDFQNILSSVVELARQQDGYLGVLALASGKSDSPDITLVAVWNSMETIRASENNLFLTHAIARYQACCEGFPRITVQELLASDFIATIVRTKA
Ga0307474_103996532	3300031718	Hardwood Forest Soil	MHARVWQLHLRPGMVQDFQHILSSLVELARQQDGYRGVFALGFGKSESPDVTLVGLWDSLDAMRASEDNLFLTQAIARFLACSDGFPHITEQELLASDFIATSARAKA
Ga0307469_100231216	3300031720	Hardwood Forest Soil	MHARLWQLHIRPGMVQDFQNILSSLVELACEQDGYRGVLALASGKSDSPNITLVAVWNSMETIRASENNLFLTHAIARYQTCCEGFPHITVQALLASDFLATGARAKA
Ga0307469_100562951	3300031720	Hardwood Forest Soil	MHARLWQLHLRPGMVQDFRDILSSLVELARQQDGYRGVLALASGKSESPDVTLVALWDSLETIRASENNLFLTEAISRYLVCCEGLPHITIQELLASDFIATSARAKA
Ga0307469_102856231	3300031720	Hardwood Forest Soil	MHARVWQLHLRPGMVQDFQHILSSLVELARQQDGYRGVLALGFGKSESPDVTLVGLWDSLDAMRASEDNLFLTQAIARFLACSEGFPHITEQELLASDFIATSARAKA
Ga0307477_100744766	3300031753	Hardwood Forest Soil	VHETQEDSTPAHVWQLHVRAGKVQDFQAILSSLIELAREQGGYRGVLALASGKSESPDVTLVALWDSLDAMRASENNLFLTEAISRYLVCCEGLPHIMEQELLACDFIATSARAKA
Ga0307477_101914591	3300031753	Hardwood Forest Soil	PGRVQDFQDVFSSVVDLARRQGGYRGVLALASGKPESPDVTVVALWDSLEAIRASENNLFLTQAISRFLACCDGLPHITEQELLASDFIATSVRAKA
Ga0307477_103664291	3300031753	Hardwood Forest Soil	MHARLWQLHLRPGMVQDFRDILSSLVELARLQEGYRGVLALASGKSESPDVTLVALWDSLETIRASENNLFLTEAISRYLVCCEGLPHITVQELLASDFIAGSARAKV
Ga0307475_101008421	3300031754	Hardwood Forest Soil	FQNILSSVVELARQQDGYLGVLALASGKSDSPDITLVAVWNSMETIRASENNLFLTHAIARYQACCEGFPHITVQELLASDFIATSASAKA
Ga0307475_101080632	3300031754	Hardwood Forest Soil	MHARVWQLQIRPGKVHDFQVTVSSVADLARQQRGYRGVLALSSGKSESLDVTLVALWDSLQAIRDSENNLFLTEAISRYLTCCKGLPHITEQGFLASDFIATRARAL
Ga0307478_100042975	3300031823	Hardwood Forest Soil	MHARVWQLQIRPGKVQDFQGTLSSVADLARQQVGYRGVFALSSGKSESPDVTVVALWDSLQAIRASENNLFLTEAISRYLTCCEGLPHISEQEFLVSDFIATSVRAKA
Ga0307478_107884171	3300031823	Hardwood Forest Soil	MHARLWQLHIRAGMVLDFQNILSSVMELARQQDGYLGVLALASGKSDSPDITLVAVWNSMETIRASENNLFLTHAIARYQTCCEGFPHITVQELLASDFIATIARAKA
Ga0307479_100223652	3300031962	Hardwood Forest Soil	MHARVWQLHLRPGMVLDFQNILSSVVELARQQDGYLGVLALASGKSDSPDITLVAVWNSMETIRASENNLFLTHAIARYQACCEGFPHITVQELLASDFIATIVRTKA
Ga0307479_105584342	3300031962	Hardwood Forest Soil	MHARVWQLHIRPGMLQDFQNILSSLVELACEQDGYRGVLALASDKSDSPDITLVAVWNSMETIRASENNLFLTHAIARYQTCCEGFPHITEQELLASDFIATSARAKA
Ga0307479_111980841	3300031962	Hardwood Forest Soil	MHARVWQLQIRPGKVHDFQVTVSSVADLARQQRGYRGVLALSSGKSESPDVTLVALWDSLEAIRASENNLFLTEAISRYLTCCEGLPRISEQEFLVSDLIATSVRAKS
Ga0307479_117354641	3300031962	Hardwood Forest Soil	LSSLVELARQQEGYRGVLALGSGKSESPDVTLVALWDSLEAMRASEDNLFVTQAIARFLACCDGLPHITEQELLASDFIATSARAKA
Ga0307471_1010975902	3300032180	Hardwood Forest Soil	MHARVWQLHIRPGKIQDFQDILSSLVDLAHRQVGYRGVLALASGNSESPDVTLVALWDSLEAIRATENNLFLTQAIARFLVCCEGLPHITEQELLASDLIATSARAIA
Ga0307471_1023542891	3300032180	Hardwood Forest Soil	DILSSLVELARQQEEYRGVLALASGKSESLDVTLVALWDSLEAMRASEDNLFVTQAIARFLACCDGFPHITEQELLASDFIATSARAKA
Ga0307472_1001407541	3300032205	Hardwood Forest Soil	MHARLWQLHLRPGMVQDFRDILSSLVELARQQDGYRGVLALASGKSESPDVTLVALWDSLETIRASENNLFLTEAISRYLVCCEGLPHI
Ga0307472_1005645381	3300032205	Hardwood Forest Soil	QRHSARNTEDAMHARVWQLHLRPGMVQDFQHILSSLVELARQQDGYRGVLALGFGKSESPDVTLVGLWDSLDAMRASEDNLFLTQAIARFLACSDGFPRITEQELLASDFIATSARAKA
Ga0348332_111585551	3300032515	Plant Litter	ARSWCRIPVSLVGLFNAEDAMNARVWQLHLSLGKVQEFQEIFSSVVAIARQQGGYRGALALASGRSASPEVSLVALWDSVEAMRASESNLFLTQAISRFLACSQGLPHITEQEVLASDFVATTARAKA
Ga0348332_131893881	3300032515	Plant Litter	MHARVWQLHLRPDKVQDFRTVLSPVDDLARKQGGYRGVFAWASGTSESPEVTLVAIWDSVEAIRASGNNLFLTEAISRYLACCRGLPHISEREFLASEYVATGARANA

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F077822

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Structural matches with SCOPe domains

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences