NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Metagenome / Metatranscriptome Family F077862

Metagenome / Metatranscriptome Family F077862

Go to section:
Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
Select file to download:
   Download


Overview

Basic Information
Family ID F077862
Family Type Metagenome / Metatranscriptome
Number of Sequences 117
Average Sequence Length 50 residues
Representative Sequence MLFHNMSSSETTGNFSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFE
Number of Associated Samples 104
Number of Associated Scaffolds 117

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 77.78 %
% of genes near scaffold ends (potentially truncated) 78.63 %
% of genes from short scaffolds (< 2000 bps) 85.47 %
Associated GOLD sequencing projects 100
AlphaFold2 3D model prediction Yes
3D model pTM-score0.23

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
Powered by Skylign

Most Common Taxonomy
Group Bacteria (68.376 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil
(20.513 % of family members)
Environment Ontology (ENVO) Unclassified
(26.496 % of family members)
Earth Microbiome Project Ontology (EMPO) Free-living → Non-saline → Soil (non-saline)
(57.265 % of family members)


 ⦗Top⦘

Multiple Sequence Alignments

Select alignment to view:      

 ⦗Top⦘

Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 20.99%    β-sheet: 0.00%    Coil/Unstructured: 79.01%
Feature Viewer
Powered by Feature Viewer

Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.23
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

 ⦗Top⦘

Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 117 Family Scaffolds
PF00078RVT_1 1.71
PF08388GIIM 1.71
PF00072Response_reg 0.85
PF00756Esterase 0.85
PF13561adh_short_C2 0.85
PF15593Imm42 0.85
PF13610DDE_Tnp_IS240 0.85
PF03576Peptidase_S58 0.85
PF00578AhpC-TSA 0.85
PF07681DoxX 0.85
PF00239Resolvase 0.85
PF13546DDE_5 0.85
PF01058Oxidored_q6 0.85
PF12704MacB_PCD 0.85
PF00465Fe-ADH 0.85
PF12850Metallophos_2 0.85
PF16694Cytochrome_P460 0.85
PF00884Sulfatase 0.85
PF03358FMN_red 0.85

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 117 Family Scaffolds
COG3191L-aminopeptidase/D-esteraseAmino acid transport and metabolism [E] 1.71
COG03373-dehydroquinate synthetaseAmino acid transport and metabolism [E] 0.85
COG0371Glycerol dehydrogenase or related enzyme, iron-containing ADH familyEnergy production and conversion [C] 0.85
COG0377NADH:ubiquinone oxidoreductase 20 kD subunit (chain B) or related Fe-S oxidoreductaseEnergy production and conversion [C] 0.85
COG1454Alcohol dehydrogenase, class IVEnergy production and conversion [C] 0.85
COG1740Ni,Fe-hydrogenase I small subunitEnergy production and conversion [C] 0.85
COG1941Coenzyme F420-reducing hydrogenase, gamma subunitEnergy production and conversion [C] 0.85
COG1961Site-specific DNA recombinase SpoIVCA/DNA invertase PinEReplication, recombination and repair [L] 0.85
COG1979Alcohol dehydrogenase YqhD, Fe-dependent ADH familyEnergy production and conversion [C] 0.85
COG2259Uncharacterized membrane protein YphA, DoxX/SURF4 familyFunction unknown [S] 0.85
COG2452Predicted site-specific integrase-resolvaseMobilome: prophages, transposons [X] 0.85
COG3260Ni,Fe-hydrogenase III small subunitEnergy production and conversion [C] 0.85
COG4270Uncharacterized membrane proteinFunction unknown [S] 0.85

 ⦗Top⦘

Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms68.38 %
UnclassifiedrootN/A31.62 %

Visualization
Powered by ApexCharts

Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300001593|JGI12635J15846_10547097Not Available678Open in IMG/M
3300003505|JGIcombinedJ51221_10194467All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium823Open in IMG/M
3300004080|Ga0062385_10037608Not Available1998Open in IMG/M
3300004132|Ga0058902_1242898All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium644Open in IMG/M
3300004152|Ga0062386_101440743Not Available574Open in IMG/M
3300004267|Ga0066396_10086499Not Available561Open in IMG/M
3300005435|Ga0070714_101896322Not Available582Open in IMG/M
3300005439|Ga0070711_100602604All Organisms → cellular organisms → Bacteria916Open in IMG/M
3300005518|Ga0070699_100189690Not Available1826Open in IMG/M
3300005526|Ga0073909_10145362All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium983Open in IMG/M
3300005542|Ga0070732_10034296All Organisms → cellular organisms → Bacteria2900Open in IMG/M
3300005568|Ga0066703_10725267Not Available571Open in IMG/M
3300005844|Ga0068862_101609680Not Available656Open in IMG/M
3300006032|Ga0066696_10915041Not Available558Open in IMG/M
3300006032|Ga0066696_10965931All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium542Open in IMG/M
3300006050|Ga0075028_100371676All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium812Open in IMG/M
3300006162|Ga0075030_101593788Not Available511Open in IMG/M
3300006163|Ga0070715_10219835Not Available976Open in IMG/M
3300006175|Ga0070712_100011061All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae5711Open in IMG/M
3300006791|Ga0066653_10311194All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium793Open in IMG/M
3300006852|Ga0075433_11414359All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium602Open in IMG/M
3300009012|Ga0066710_100008089All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium10156Open in IMG/M
3300009518|Ga0116128_1158273All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium645Open in IMG/M
3300009547|Ga0116136_1117552Not Available684Open in IMG/M
3300009636|Ga0116112_1168135All Organisms → cellular organisms → Bacteria610Open in IMG/M
3300009646|Ga0116132_1148534All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium714Open in IMG/M
3300010048|Ga0126373_10111154All Organisms → cellular organisms → Bacteria → Acidobacteria2550Open in IMG/M
3300010048|Ga0126373_12651873All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium559Open in IMG/M
3300010048|Ga0126373_12909340Not Available534Open in IMG/M
3300010359|Ga0126376_11668952All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium671Open in IMG/M
3300010359|Ga0126376_12589234All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium556Open in IMG/M
3300010360|Ga0126372_13115213Not Available515Open in IMG/M
3300010361|Ga0126378_10853077All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1019Open in IMG/M
3300010361|Ga0126378_12359388All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium607Open in IMG/M
3300010361|Ga0126378_12972310Not Available540Open in IMG/M
3300010362|Ga0126377_10136907All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2284Open in IMG/M
3300010366|Ga0126379_10070177All Organisms → cellular organisms → Bacteria → Acidobacteria2984Open in IMG/M
3300010366|Ga0126379_13366306All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium535Open in IMG/M
3300010376|Ga0126381_100100858All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae3686Open in IMG/M
3300010376|Ga0126381_105070029Not Available505Open in IMG/M
3300011119|Ga0105246_10649489Not Available918Open in IMG/M
3300011120|Ga0150983_12277012Not Available544Open in IMG/M
3300012363|Ga0137390_11755428All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium553Open in IMG/M
3300012501|Ga0157351_1015107All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium759Open in IMG/M
3300012923|Ga0137359_11066695All Organisms → cellular organisms → Bacteria → Acidobacteria692Open in IMG/M
3300012927|Ga0137416_10113712All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2060Open in IMG/M
3300012930|Ga0137407_11125192All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium745Open in IMG/M
3300012948|Ga0126375_11768210All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium538Open in IMG/M
3300012986|Ga0164304_10876558All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium700Open in IMG/M
3300014156|Ga0181518_10421417All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium642Open in IMG/M
3300015372|Ga0132256_101143423All Organisms → cellular organisms → Bacteria893Open in IMG/M
3300016294|Ga0182041_11724885Not Available580Open in IMG/M
3300016319|Ga0182033_11716497Not Available569Open in IMG/M
3300016319|Ga0182033_11928403All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium537Open in IMG/M
3300016371|Ga0182034_12031881All Organisms → cellular organisms → Bacteria508Open in IMG/M
3300016387|Ga0182040_11178561Not Available644Open in IMG/M
3300016404|Ga0182037_10623230All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium917Open in IMG/M
3300016404|Ga0182037_11948689Not Available527Open in IMG/M
3300016422|Ga0182039_10439396All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Edaphobacter1116Open in IMG/M
3300017946|Ga0187879_10604485Not Available609Open in IMG/M
3300017970|Ga0187783_10001164All Organisms → cellular organisms → Bacteria19420Open in IMG/M
3300017970|Ga0187783_11297308Not Available525Open in IMG/M
3300017972|Ga0187781_10103611All Organisms → cellular organisms → Bacteria1977Open in IMG/M
3300017972|Ga0187781_10188188All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1455Open in IMG/M
3300017975|Ga0187782_10337574Not Available1140Open in IMG/M
3300018033|Ga0187867_10592778All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium607Open in IMG/M
3300018046|Ga0187851_10181782All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1257Open in IMG/M
3300019264|Ga0187796_1113289Not Available510Open in IMG/M
3300019888|Ga0193751_1027067All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2741Open in IMG/M
3300020002|Ga0193730_1151468All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium613Open in IMG/M
3300020581|Ga0210399_10001684All Organisms → cellular organisms → Bacteria17313Open in IMG/M
3300021086|Ga0179596_10566029All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium576Open in IMG/M
3300021178|Ga0210408_10140723All Organisms → cellular organisms → Bacteria1909Open in IMG/M
3300021403|Ga0210397_11057056All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium630Open in IMG/M
3300021478|Ga0210402_11443904Not Available615Open in IMG/M
3300021560|Ga0126371_13382819Not Available539Open in IMG/M
3300022709|Ga0222756_1092639Not Available507Open in IMG/M
3300024056|Ga0124853_1133730All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium589Open in IMG/M
3300024224|Ga0247673_1008977All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium1274Open in IMG/M
3300025604|Ga0207930_1113057All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium610Open in IMG/M
3300026312|Ga0209153_1085071All Organisms → cellular organisms → Bacteria1170Open in IMG/M
3300026340|Ga0257162_1046634Not Available547Open in IMG/M
3300026376|Ga0257167_1083636All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium506Open in IMG/M
3300026469|Ga0257169_1018302Not Available973Open in IMG/M
3300026514|Ga0257168_1123223All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium578Open in IMG/M
3300026551|Ga0209648_10626055All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Acidicapsa → Acidicapsa dinghuensis590Open in IMG/M
3300026880|Ga0209623_1015688Not Available528Open in IMG/M
3300027070|Ga0208365_1000852All Organisms → cellular organisms → Bacteria3114Open in IMG/M
3300027674|Ga0209118_1104977All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium796Open in IMG/M
3300027853|Ga0209274_10003101All Organisms → cellular organisms → Bacteria8029Open in IMG/M
3300028536|Ga0137415_10005501All Organisms → cellular organisms → Bacteria12552Open in IMG/M
3300028866|Ga0302278_10187024All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae1042Open in IMG/M
3300030832|Ga0265752_109289Not Available522Open in IMG/M
3300031128|Ga0170823_14134530Not Available517Open in IMG/M
3300031561|Ga0318528_10695598All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium544Open in IMG/M
3300031718|Ga0307474_10052979All Organisms → cellular organisms → Bacteria2997Open in IMG/M
3300031720|Ga0307469_11761188All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
3300031736|Ga0318501_10612003All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
3300031763|Ga0318537_10055508All Organisms → cellular organisms → Bacteria1442Open in IMG/M
3300031768|Ga0318509_10780231Not Available529Open in IMG/M
3300031794|Ga0318503_10114091All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium863Open in IMG/M
3300031823|Ga0307478_10059631All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium2853Open in IMG/M
3300031833|Ga0310917_10165924All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Burkholderiaceae1464Open in IMG/M
3300031846|Ga0318512_10508362All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium611Open in IMG/M
3300031879|Ga0306919_11262869All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium560Open in IMG/M
3300031897|Ga0318520_10676730All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium644Open in IMG/M
3300031910|Ga0306923_11276108All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium780Open in IMG/M
3300032001|Ga0306922_12024667All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium560Open in IMG/M
3300032025|Ga0318507_10345605All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium648Open in IMG/M
3300032025|Ga0318507_10371793All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium623Open in IMG/M
3300032051|Ga0318532_10296066Not Available574Open in IMG/M
3300032059|Ga0318533_11059141All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium594Open in IMG/M
3300032076|Ga0306924_11994969All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium598Open in IMG/M
3300032091|Ga0318577_10391478All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium664Open in IMG/M
3300033289|Ga0310914_10041622All Organisms → cellular organisms → Bacteria → Acidobacteria3745Open in IMG/M
3300033414|Ga0316619_10950488All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium745Open in IMG/M
3300034663|Ga0314784_161876Not Available514Open in IMG/M


 ⦗Top⦘

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil20.51%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil13.68%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil10.26%
Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil5.98%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil5.13%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil4.27%
Tropical PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland4.27%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Peatland3.42%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil3.42%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere3.42%
PeatlandEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Peatland2.56%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil2.56%
Bog Forest SoilEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil1.71%
WatershedsEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Watersheds1.71%
Surface SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Surface Soil1.71%
Grasslands SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil1.71%
BogEnvironmental → Aquatic → Freshwater → Wetlands → Bog → Bog0.85%
Freshwater WetlandsEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Freshwater Wetlands0.85%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.85%
Arctic Peat SoilEnvironmental → Terrestrial → Soil → Unclassified → Permafrost → Arctic Peat Soil0.85%
Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.85%
PeatlandEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Peatland0.85%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil0.85%
SoilEnvironmental → Terrestrial → Soil → Loam → Forest Soil → Soil0.85%
Agricultural SoilEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Agricultural Soil0.85%
BogEnvironmental → Terrestrial → Peat → Unclassified → Unclassified → Bog0.85%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere0.85%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere0.85%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Miscanthus Rhizosphere0.85%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.85%

Visualization
Powered by ApexCharts



Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300001593Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_OM2_M2EnvironmentalOpen in IMG/M
3300003505Forest soil microbial communities from Harvard Forest LTER, USA - Combined assembly of forest soil metaG samples (ASSEMBLY_DATE=20140924)EnvironmentalOpen in IMG/M
3300004080Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3EnvironmentalOpen in IMG/M
3300004132Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaT HF240 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300004152Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3EnvironmentalOpen in IMG/M
3300004267Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 6 MoBioEnvironmentalOpen in IMG/M
3300005435Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaGEnvironmentalOpen in IMG/M
3300005439Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaGEnvironmentalOpen in IMG/M
3300005518Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaGEnvironmentalOpen in IMG/M
3300005526Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire. - Coalmine Soil_Cen17_06102014_R1EnvironmentalOpen in IMG/M
3300005542Surface soil microbial communities from Centralia Pennsylvania, which are recovering from an underground coalmine fire - Coalmine Soil_Cen04_05102014_R1EnvironmentalOpen in IMG/M
3300005568Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_152EnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300006032Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_145EnvironmentalOpen in IMG/M
3300006050Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2014EnvironmentalOpen in IMG/M
3300006162Freshwater sediment microbial communities from Pennsylvania, USA - Little Laurel Run_MetaG_LLR_2012EnvironmentalOpen in IMG/M
3300006163Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaGEnvironmentalOpen in IMG/M
3300006175Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaGEnvironmentalOpen in IMG/M
3300006791Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_102EnvironmentalOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300009012Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159EnvironmentalOpen in IMG/M
3300009518Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_16_150EnvironmentalOpen in IMG/M
3300009547Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_20_40EnvironmentalOpen in IMG/M
3300009636Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_8_150EnvironmentalOpen in IMG/M
3300009646Peatland microbial communities from Minnesota, USA, analyzing carbon cycling and trace gas fluxes - June2015DPH_17_150EnvironmentalOpen in IMG/M
3300010048Tropical forest soil microbial communities from Panama - MetaG Plot_11EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010360Tropical forest soil microbial communities from Panama - MetaG Plot_6EnvironmentalOpen in IMG/M
3300010361Tropical forest soil microbial communities from Panama - MetaG Plot_23EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300010366Tropical forest soil microbial communities from Panama - MetaG Plot_24EnvironmentalOpen in IMG/M
3300010376Tropical forest soil microbial communities from Panama - MetaG Plot_28EnvironmentalOpen in IMG/M
3300011119Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaGHost-AssociatedOpen in IMG/M
3300011120Combined assembly of Microbial Forest Soil metaTEnvironmentalOpen in IMG/M
3300012363Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaGEnvironmentalOpen in IMG/M
3300012501Unplanted soil (control) microbial communities from North Carolina - M.Soil.4.yng.170610EnvironmentalOpen in IMG/M
3300012923Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaGEnvironmentalOpen in IMG/M
3300012927Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012930Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012948Tropical forest soil microbial communities from Panama - MetaG Plot_14EnvironmentalOpen in IMG/M
3300012986Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_217_MGEnvironmentalOpen in IMG/M
3300014156Peatland microbial communities from Houghton, MN, USA - PEATcosm2014_Bin01_60_metaGEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016294Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.178EnvironmentalOpen in IMG/M
3300016319Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00HEnvironmentalOpen in IMG/M
3300016371Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172EnvironmentalOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016404Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300017946Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_19_10EnvironmentalOpen in IMG/M
3300017970Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 1015_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017972Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP02_20_MGEnvironmentalOpen in IMG/M
3300017975Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0715_SJ02_MP15_20_MGEnvironmentalOpen in IMG/M
3300018033Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_13_10EnvironmentalOpen in IMG/M
3300018046Peatland microbial communities from SPRUCE experiment site at the Marcell Experimental Forest, Minnesota, USA - June2016WEW_6_10EnvironmentalOpen in IMG/M
3300019264Metatranscriptome of tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MT (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300019888Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? L1c2EnvironmentalOpen in IMG/M
3300020002Soil microbial communities from a riparian zone of the East river system, Colorado, United States ? U1a1EnvironmentalOpen in IMG/M
3300020581Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-14-MEnvironmentalOpen in IMG/M
3300021086Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_1_08_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300021178Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-4-MEnvironmentalOpen in IMG/M
3300021403Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-OEnvironmentalOpen in IMG/M
3300021478Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-MEnvironmentalOpen in IMG/M
3300021560Tropical forest soil microbial communities from Panama - MetaG Plot_4EnvironmentalOpen in IMG/M
3300022709Metatranscriptome of lab incubated forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300024056Freshwater wetland microbial communities from Ohio, USA, analyzing the effect of biotic and abiotic controls - Mud 3 Core 4 Depth 3 metaG (PacBio error correction)EnvironmentalOpen in IMG/M
3300024224Soil microbial communities from Purdue University Martell Research Forest, Indiana, United States - CNK14EnvironmentalOpen in IMG/M
3300025604Arctic peat soil from Barrow, Alaska - NGEE Surface sample 210-3 shallow-092012 (SPAdes)EnvironmentalOpen in IMG/M
3300026312Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_120 (SPAdes)EnvironmentalOpen in IMG/M
3300026340Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - NR-04-AEnvironmentalOpen in IMG/M
3300026376Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-02-BEnvironmentalOpen in IMG/M
3300026469Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-17-BEnvironmentalOpen in IMG/M
3300026514Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DL-13-BEnvironmentalOpen in IMG/M
3300026551Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_115cm (SPAdes)EnvironmentalOpen in IMG/M
3300026880Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027070Forest soil microbial communities from Harvard Forest Long Term Ecological Research site in Petersham, Massachusetts, USA - MetaG HF004 (SPAdes)EnvironmentalOpen in IMG/M
3300027674Forest soil microbial communities from Thunder Bay, Ontario, Canada - Black Spruce, Ontario site 2_A8_Ref_M1 (SPAdes)EnvironmentalOpen in IMG/M
3300027853Reference soil microbial communities from the Hubbard Brook experimental Forest, New Hampshire, USA - Hubbard Brook CCASE Soil Metagenome REF1 (SPAdes)EnvironmentalOpen in IMG/M
3300028536Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug3_1_1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300028866Peat permafrost microbial communities from Stordalen Mire near Abisko, Sweden - III_Bog_N3_2EnvironmentalOpen in IMG/M
3300030832Metatranscriptome of soil microbial communities from Maridalen valley, Oslo, Norway - NSE4 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031128Oak Summer Coassembly Site 11 - Champenoux / Amance forestEnvironmentalOpen in IMG/M
3300031561Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26EnvironmentalOpen in IMG/M
3300031718Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM1C_05EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031736Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21EnvironmentalOpen in IMG/M
3300031763Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f29EnvironmentalOpen in IMG/M
3300031768Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f22EnvironmentalOpen in IMG/M
3300031794Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f23EnvironmentalOpen in IMG/M
3300031823Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_05EnvironmentalOpen in IMG/M
3300031833Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.LF178EnvironmentalOpen in IMG/M
3300031846Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f19EnvironmentalOpen in IMG/M
3300031879Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.172 (v2)EnvironmentalOpen in IMG/M
3300031897Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16EnvironmentalOpen in IMG/M
3300031910Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.108 (v2)EnvironmentalOpen in IMG/M
3300032001Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.082 (v2)EnvironmentalOpen in IMG/M
3300032025Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f20EnvironmentalOpen in IMG/M
3300032051Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f26EnvironmentalOpen in IMG/M
3300032059Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27EnvironmentalOpen in IMG/M
3300032076Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)EnvironmentalOpen in IMG/M
3300032091Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f25EnvironmentalOpen in IMG/M
3300033289Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN108EnvironmentalOpen in IMG/M
3300033414Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_Aug_M1_C1_D4_BEnvironmentalOpen in IMG/M
3300034663Metatranscriptome of lab incibated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20R1 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M

Geographical Distribution
Zoom:     Powered by OpenStreetMap


 ⦗Top⦘

Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
JGI12635J15846_1054709713300001593Forest SoilMLFHSMSSSETTGNCSAALTQYFAEHSGLQLGIKVSAFPSSSHSDSGEVCIFE
JGIcombinedJ51221_1019446723300003505Forest SoilMFFHNMSSSETTGNFSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCIFEA*
Ga0062385_1003760813300004080Bog Forest SoilNMSSSETTGNFPAALTQYFTGNTGLRHGINVSAFPSSPHPDPGEVVLFAA*
Ga0058902_124289813300004132Forest SoilMLFHNMSSSETTGNSSVALTQCFTENSGLQPGIKKVSAFPLSSHSDPGEGAFSRLDYGSL
Ga0062386_10144074313300004152Bog Forest SoilMLFHNMSPSETTGNFPVALAQYFTGNTGLQLGIKVSAFPSSLTLRFW*
Ga0066396_1008649913300004267Tropical Forest SoilMVLRNMSPSETTGIFPAALTQYSTGNTSLQPGIKSFGVSLDTSHSDSGEVCVFGLDYGS
Ga0070714_10189632223300005435Agricultural SoilMLFHNMSSSETTGNSSAALTQFFTENSGLQLGIKVSAFPLSSHSDSGEVCVFEA*
Ga0070711_10060260413300005439Corn, Switchgrass And Miscanthus RhizosphereMPRRPATGSELSLMVFRNMSSSETGNSSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFEA*
Ga0070699_10018969013300005518Corn, Switchgrass And Miscanthus RhizospherePTTGSELSLMLFHNMSSSETTGNFSAALTQYFTENSGLQLGIKVSAFPLSSHSDSGEVCVFEA*
Ga0073909_1014536223300005526Surface SoilMVFRNLSSSETTGDSTVALTQYFTADSSLYHGIKVSASPLSSHSDSGEVCVFEA*
Ga0070732_1003429653300005542Surface SoilMVFRNMSSSETTGNFPAALTQYFTGNTGLRHGINVSAFPSSSHSDPGEVVLFAA*
Ga0066703_1072526713300005568SoilMLFHNMSSSETTGNSSAALTQYFTEDSGLQLGLTVSAFPSSSHSDSGEVCIFEA*
Ga0068862_10160968013300005844Switchgrass RhizosphereATGSELSLMLFRNMSSSETPGNFSAAYTQYSTENAGLQLRIKVSAFPLSSHSDSGEGDCFEA*
Ga0066696_1091504123300006032SoilMSSSETTGNSSAALAQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFEA*
Ga0066696_1096593113300006032SoilMLFHSMSSSETTGNSSAAYTQYFTEDAGLRLQSIVSAFPLSS
Ga0075028_10037167623300006050WatershedsMVFRNMSSSETTGNSSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGE
Ga0075030_10159378813300006162WatershedsMLFRNMSSSETTGNPSAACTQYFTENIGLQLGIKVSAFPLSSHSDS
Ga0070715_1021983513300006163Corn, Switchgrass And Miscanthus RhizosphereMLFHSMSSSETTGNPSVAYTQYFTEDAGLQLQLIVSAFPSSSHSDSGEGMVFEA*
Ga0070712_10001106183300006175Corn, Switchgrass And Miscanthus RhizosphereMVFRNMSSSETTGDSTVALTQYFTADSSLYHGIKVSASPLSSHSDSGEVCVFEA*
Ga0066653_1031119423300006791SoilMLFHNMSSSETTGNFSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFEA*
Ga0075433_1141435933300006852Populus RhizosphereMHFHSMSSSETTGNFPAACTQYFTENTGLQLGIKVSAF
Ga0066710_10000808953300009012Grasslands SoilMLFHNMSSSETTGNSSAALTQYFTEDSGLQLGLTVSAFPSSSHSDSGEVCIFEA
Ga0116128_115827313300009518PeatlandMLFRNMSSSETTGNFSAASTQYFTENAGLQLEVTVSAFPLSSH
Ga0116136_111755213300009547PeatlandETTGNFPVALAQFFTGNTGLRHGINVSAFPSSSHSDPGEGVLFGA*
Ga0116112_116813523300009636PeatlandMLCRNMSSSETTGNFSAAYTQCFTENAGLQLQLTVSAF
Ga0116132_114853423300009646PeatlandMLFHNMSPSTTTGNSSDAYAQYFSEDTSLQLPMTVSAFP
Ga0126373_1011115423300010048Tropical Forest SoilMVFRNLSSSETTRDSPVALTQYFTGDSSLDHGIKVSASPVSSPSDSGEVCVFEA*
Ga0126373_1265187313300010048Tropical Forest SoilMVFRNMSSSETTGNSPVALTQSFTGDSSLYHGIKVSASPLSSHSDSGEV
Ga0126373_1290934013300010048Tropical Forest SoilMVFRNPSPSETTGNFPVALTQYFTGNSGLRHRVNVSAFP
Ga0126376_1166895213300010359Tropical Forest SoilMVFRNMLPSETTGNSSAAFTQYLTEDSGLQLQNTVSAFPSS
Ga0126376_1258923423300010359Tropical Forest SoilMLFHNMSSSETTGNFSAAHTQCFTENAGLQLRITVSAFPLSSHSDSG
Ga0126372_1311521313300010360Tropical Forest SoilMIFHNMSSSETTGNSSAAHTQCFTENAGLRLQITVSAFPTPPHSDSDE
Ga0126378_1085307713300010361Tropical Forest SoilMVFRNMSSSETTGNSPVAFTQYFTGDSSLYLGITVSAFPSSSHSDSGEVC
Ga0126378_1235938813300010361Tropical Forest SoilMLFHSMSPSATTGNFSAAYTQYFTENAGLRLLSTVSAF
Ga0126378_1297231023300010361Tropical Forest SoilSETTGNFPVALTQYFAGDSSLDLGITVSAFPSSSHSDSDEVCVFEA*
Ga0126377_1013690723300010362Tropical Forest SoilMFFRNMSSSETTGNSPVALTQYFTEDASLQLGITVSAFPSSSHSDSSEVCVFEA*
Ga0126379_1007017743300010366Tropical Forest SoilMVFRNLSSSETTGDSPVALTQYFTGDSSLDHGIKVSASPVSSPSDSGEVCVFEA*
Ga0126379_1336630613300010366Tropical Forest SoilMSSSETTGNFSAAHTQCFTENAGLQLQITVSAFPTPP
Ga0126381_10010085863300010376Tropical Forest SoilMVFHNMSPSETTGNSSAAYTQYFTEDVGLQLRITVSAFPLSSHSDSGEVMVFEA*
Ga0126381_10507002913300010376Tropical Forest SoilSSETTGNSPVAFTQYFTEDASLQLGITVSAFPSSSHSDSGEVCVFEA*
Ga0105246_1064948923300011119Miscanthus RhizosphereMLFRNMSSSETPGNFSAAYTQYSTEDAGLQLRIKVSAFPLSSHSDSGEG
Ga0150983_1227701213300011120Forest SoilMLFHNMSPSTTTGNPSAVCTQYFTENAGLQLPMKVSAFPLSSHSDSGEGCF
Ga0137390_1175542813300012363Vadose Zone SoilMLFHNMSSSKTTGNSSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVC
Ga0157351_101510713300012501Unplanted SoilMVFRNMSSSETTGNSSAALTQCFTEDTGLQRGLKVSAYSLRTSHSD
Ga0137359_1106669513300012923Vadose Zone SoilMLFHNMSSSETTGNFSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFE
Ga0137416_1011371213300012927Vadose Zone SoilMLFHNMSPSVTPGNFSAAYTQYLAENACLQLQIKVSAFPLSSHSD
Ga0137407_1112519213300012930Vadose Zone SoilMLFHNMSSSETTGNFSAACTQYFTENTGLQLGIKVSAFPSSSHSDSGEGCVFE
Ga0126375_1176821013300012948Tropical Forest SoilMLFHNLSSSETTGNFSAAHTQCFTENAGLQLRITVSAFPLSSHS
Ga0164304_1087655813300012986SoilMVFRNMSSSETTGNSSAALTQCFTEDTGLQRGLKVSAYSLRTSHSDSGGV
Ga0181518_1042141713300014156BogMPFHNMSSSETTGNSSVAYTQYFAEDTGLQLHLTVSAFPISPHSDSGEGRIF
Ga0132256_10114342313300015372Arabidopsis RhizosphereTGSELSLMLFHNMSSSETTGNFPAAYTQSFAENTGLRLGIKVSAFPSSSHSDSGEVYVFEV*
Ga0182041_1172488513300016294SoilGSELSLMFFRNMSSSETTGNSPVALTQFFTGDSSLHLGITVSAFPSSSHSDSSEVCVFEA
Ga0182033_1171649713300016319SoilTGSELSLMFFRNMSSSETTGNSSAAFTQCFTEDAGLQHGIKVSAYSLRTSHSDSGEVCVFEA
Ga0182033_1192840313300016319SoilMLFHNMSSSETTGNFSAAHTQCFTENAGLQLQITVSAFPTPPHSDSGEGDCFRG
Ga0182034_1203188123300016371SoilMFFCNMSPSETTGNSSAAYTQCFTEDASFNAGLKVSAF
Ga0182040_1117856113300016387SoilMLFHNMSPSTTTGNSSAAYAQCFTEDTSLRLRMTVSAFPSSSHSDSGEGISFRG
Ga0182037_1062323013300016404SoilMVFRNMSSSETTGNFPAALTQYFTGNTGLRHGLIVSAFPLPSHSDSGEECFSRLDYG
Ga0182037_1194868913300016404SoilIFRNMSSSETTENFPAAFTQYFTGNTGLRHGINVSAFPSPSHSDPGEVVLFAA
Ga0182039_1043939623300016422SoilMLFRNMSSSVTTGNFSAAYTQSFTENAGLQLQLTV
Ga0187879_1060448513300017946PeatlandMPSQPTTGSELSLMLSRNMSSSETTGNFSVAYTQYFTENAGLQLHVTVSAFPSSSHSDSGEEIIFEA
Ga0187783_10001164173300017970Tropical PeatlandMLFRNMSSSETTGNFSDALTQYFTENTGLQLGIKVSAFPSSSHFDSGEVCVFEA
Ga0187783_1129730813300017970Tropical PeatlandSETTGNSPVALTQSFAGDSSLYHGIRVSASPLSSHSDSGEVCVFEA
Ga0187781_1010361123300017972Tropical PeatlandMVFRDMSSSETTGNFPAALTQFFTGNTGLRHGLIVSAFPSPSHSDTSEVVLFEA
Ga0187781_1018818813300017972Tropical PeatlandMVGRNMSPSETPGNFPVALTQFFTGNTGLRHGINVSAFPSSSHSDPSEGV
Ga0187782_1033757413300017975Tropical PeatlandRPTTGSELSLMVFRNMSSSETTGNFPAALTQYFTGNTGLRHGLIVSAFPSPSHSDTSEVVLFEA
Ga0187867_1059277813300018033PeatlandMSPSETTGNFPVALTQYFTGNSGLRHGINVSAFPSSSHSDPGEECFSGLDYGSLA
Ga0187851_1018178233300018046PeatlandMLSRNMSSSETTGNFSVAYTQYFTENAGLQLHVTVSAFPSSSHSDSGEEIIFEA
Ga0187796_111328913300019264PeatlandMVFRNMSSSETTGNFPVALTQFFTGNSGLRHGIKVSAFPSSSHSDP
Ga0193751_102706733300019888SoilMLFHNMSSSETTGNSSAALAQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFEA
Ga0193730_115146813300020002SoilMLFHNMSSSETTGNSSVALTQCFTEDSGLQPGIKKFRHSFISHSDSGEGAFSRLDYGSLL
Ga0210399_1000168423300020581SoilMVFRNMSSSETTGNFPAALTQYFTGNTGLRHGINVSAFPSSSHSDPGEVVLFAA
Ga0179596_1056602923300021086Vadose Zone SoilMLFHNMSSSETTGNSSAALTQYFTENSGLQLGIKVSAFPSSSHSDSG
Ga0210408_1014072313300021178SoilMLFHNMSSSETTGNFSAAYTQYFTENTGLQLQITV
Ga0210397_1105705623300021403SoilMLFRNMSSSETPGNFSAASTQYFTENAGLQPKSRVSAFPLSSHSDSGEGNFFEALLRFT
Ga0210402_1144390413300021478SoilMLFHNMSPSTTTGNPSAVYTQYFTENAGLQLPMKVSAFPS
Ga0126371_1338281913300021560Tropical Forest SoilMSPSETTGNFPAACTQYFTENTGLQLGIKVSAFPTSSHSDSGEECVFEA
Ga0222756_109263913300022709SoilMLFHNMSSSETTGNSSAALTQFFTENSGLQRGIKVSAFPS
Ga0124853_113373023300024056Freshwater WetlandsMFFRNMSSSETTGNFSAAYTQYFTENAGLQLQLTVSAFPLSSHSDSG
Ga0247673_100897713300024224SoilMVFRNMSSSETTGNSSAALTQCFTEDTGLQRGLKVSAYSLRTSHSDSG
Ga0207930_111305713300025604Arctic Peat SoilMLFRNMSSSETTGNFPVALTQFFTGNASLRHGINVSAFPLPSHSDSGEECFSGLDYGSLA
Ga0209153_108507133300026312SoilMLFHSMSSSATTGNSSAAYTQYFTEDAGLRLQSTVSAFPLSS
Ga0257162_104663423300026340SoilMLFHNMSPSETPGNFSAAYTQYFTENAGLQLQIKVSAFPLSSHSDSGEGD
Ga0257167_108363623300026376SoilMLFHNMSSSETTGNSSAALAQYFTENSGLQLGIKVSAFPSSSH
Ga0257169_101830213300026469SoilTGSELSLMLFHNMSSSETTGNSSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFE
Ga0257168_112322313300026514SoilMFFHNMSSSETTGNFSAALTQYFTENSGLQLGIKVSAFPSSS
Ga0209648_1062605513300026551Grasslands SoilMSSSETTGNSSAALTQYFTENSGLQLGIKVSAFPSSSHSVSGEV
Ga0209623_101568813300026880Forest SoilELSLLVFRNMSSSETTGNFSAAYSQYFTENADLQLRIKVSAFPLSSHSDSGEGDYFEA
Ga0208365_100085213300027070Forest SoilMFFHNMSSSETTGNFSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCIFEA
Ga0209118_110497723300027674Forest SoilMFFRNMSSSETTGNFSAYTQYFTENTGLQLGIKVSAFPSS
Ga0209274_1000310173300027853SoilMLFHNMSSSETTGNSSAARTQYFTENSGLQLGIKVSAFPLSSHSDSGEVCVFEA
Ga0137415_1000550183300028536Vadose Zone SoilMLFHNMSSSETTGNSSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFEA
Ga0302278_1018702423300028866BogMIFHSMSPSETTGNFSAAHTQYFAENAGLQLRLKVSAFPTSSHSDSGEGHCF
Ga0265752_10928923300030832SoilMLFRNMSSSETTGNSSAAYTQYFTENAGLQLQLTVWAFPLS
Ga0170823_1413453023300031128Forest SoilELSLMVFRNMSSSETTGNSSAALTQYFTENSGLQLGIKVSAFPSSSHSDSGEVCVFEA
Ga0318528_1069559823300031561SoilMLFHNMSSSETPGNFSAACTQYLAENAGLQLHIKVSAFPLS
Ga0307474_1005297943300031718Hardwood Forest SoilMVFHNMSSSETTGNFPAALTQYFTGNTGLRHGINVSAFPSPSHSDPGEVVLFAA
Ga0307469_1176118813300031720Hardwood Forest SoilMLLHNMSSSTTTGNPSAAYTQYFAENAGLQLRMRVSAFPS
Ga0318501_1061200313300031736SoilMLSHNMSPSSTTGNPSAAYTQYFTESAGLQLRMKVSAFPSSS
Ga0318537_1005550853300031763SoilMSSSETTGNFSVASTQCFTENAGLQLQLTVSAFPSSSHSDSREGIVFEA
Ga0318509_1078023123300031768SoilMVFRNMSSSGTPGNCPAASTQCFTENAGLRLRGTVSAFPNILTLRFW
Ga0318503_1011409113300031794SoilMFFRNMSSSETTGNSPVAFTQYFTEDASLQLGITVSAFPSSSPSDSSE
Ga0307478_1005963133300031823Hardwood Forest SoilMLFRNMSSSETTGNFPAALTQYFTGNTGLRHGINVSAFPSSSHSDPGEVVLFAA
Ga0310917_1016592413300031833SoilMLFCIMSSSETTGNSPAANAQYFTGDAGLQLRITVSAFPIV
Ga0318512_1050836223300031846SoilMFFRNMSSSETTGNSPVAFTQYFTEDSGLHLGLTVSAFPSSSHSDSSE
Ga0306919_1126286913300031879SoilMLSHNMSPSSTTGNPSAAYTQYFTESAGLQLRMKVSAFPSSSHSDSGEGKFSRL
Ga0318520_1067673013300031897SoilMLFCNMSSSETTGNSPAANAQYFAGDAGLQLRITVSAFPTVLTLR
Ga0306923_1127610823300031910SoilMLFRNMSSSVTTGNFSVASTQCFTENAGLQLQLTVSAFPSSSHSDSREGIVF
Ga0306922_1202466713300032001SoilMLFHNMSPSSTTGNPSAAYTQYFTESAGLQLRMKVSAFPSSSHS
Ga0318507_1034560513300032025SoilMLFHNMSSSETTGNFSAAHTQCFTENAGLQLQITVSAFPTPPHSD
Ga0318507_1037179313300032025SoilMLSHNMSPSSTTGNPSAAYTQYFTESAGLQLRMKVSAFPSSSHSDSGEGKFS
Ga0318532_1029606613300032051SoilPAALTQYFTGSTGLRHGINVSAFPSPSHSDPGEVVLFAA
Ga0318533_1105914123300032059SoilMIFRNMSPSGTPGNSSAACAQYFTEDAGLQLQGTVSAFPIILTLRF
Ga0306924_1199496923300032076SoilMLSHNMSPSSTTGNPSAAYTQYFTESAGLQLRMKVSAFPSSSHSDSGEGKFSRLNY
Ga0318577_1039147813300032091SoilMLSHNMSPSSTTGNPSAAYTQYFTESAGLQLRMKVSAFPSSSHSDSGEGKF
Ga0310914_1004162223300033289SoilMVLRNMSSSETTGNFPAALTQYFTGSTGLRHGINVSAFPSPSHSDPGEVVLFAA
Ga0316619_1095048813300033414SoilMFFRNMSSSETTGNFSAAYTQYFTENAGLQLQLTVSAFPLSSH
Ga0314784_161876_340_5133300034663SoilMLSHNMSPSSTTGNPSAAYTQYFTESAGLQLRMKVSAFPSSSHSDSGEGKFSRLNYGS

 ⦗Top⦘


Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.