Metagenome Family F078173

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078173
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	61 residues
Representative Sequence	MADGTLQRLFWRVADQLDYLVTLARLRILDALAGPLPETPADRQRQRYRERIKRTFPEIE
Number of Associated Samples	82
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	57.89 %
% of genes near scaffold ends (potentially truncated)	37.93 %
% of genes from short scaffolds (< 2000 bps)	80.17 %
Associated GOLD sequencing projects	74
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.44

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (52.586 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil (41.379 % of family members)
Environment Ontology (ENVO)	Unclassified (49.138 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (51.724 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 54.55% β-sheet: 0.00% Coil/Unstructured: 45.45%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.44
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.44
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF13091	PLDc_2	12.07
PF13650	Asp_protease_2	2.59
PF07589	PEP-CTERM	2.59
PF13975	gag-asp_proteas	1.72
PF12464	Mac	1.72
PF11994	DUF3489	1.72
PF00106	adh_short	0.86
PF04392	ABC_sub_bind	0.86
PF14833	NAD_binding_11	0.86
PF07369	DUF1488	0.86
PF02049	FliE	0.86
PF00805	Pentapeptide	0.86
PF00486	Trans_reg_C	0.86
PF01609	DDE_Tnp_1	0.86
PF02586	SRAP	0.86
PF00211	Guanylate_cyc	0.86
PF00005	ABC_tran	0.86
PF00313	CSD	0.86
PF00239	Resolvase	0.86
PF04052	TolB_N	0.86
PF02796	HTH_7	0.86
PF02735	Ku	0.86
PF02810	SEC-C	0.86
PF12974	Phosphonate-bd	0.86
PF03006	HlyIII	0.86
PF01230	HIT	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG1677	Flagellar hook-basal body complex protein FliE	Cell motility [N]	1.72
COG0823	Periplasmic component TolB of the Tol biopolymer transport system	Intracellular trafficking, secretion, and vesicular transport [U]	0.86
COG1272	Predicted membrane channel-forming protein YqfA, hemolysin III family	Intracellular trafficking, secretion, and vesicular transport [U]	0.86
COG1273	Non-homologous end joining protein Ku, dsDNA break repair	Replication, recombination and repair [L]	0.86
COG1357	Uncharacterized conserved protein YjbI, contains pentapeptide repeats	Function unknown [S]	0.86
COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	Replication, recombination and repair [L]	0.86
COG2114	Adenylate cyclase, class 3	Signal transduction mechanisms [T]	0.86
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.86
COG2452	Predicted site-specific integrase-resolvase	Mobilome: prophages, transposons [X]	0.86
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.86
COG3039	Transposase and inactivated derivatives, IS5 family	Mobilome: prophages, transposons [X]	0.86
COG3293	Transposase	Mobilome: prophages, transposons [X]	0.86
COG3385	IS4 transposase InsG	Mobilome: prophages, transposons [X]	0.86
COG5421	Transposase	Mobilome: prophages, transposons [X]	0.86
COG5433	Predicted transposase YbfD/YdcC associated with H repeats	Mobilome: prophages, transposons [X]	0.86
COG5659	SRSO17 transposase	Mobilome: prophages, transposons [X]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
All Organisms	root	All Organisms	47.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
cellular organisms	root	All Organisms → cellular organisms	47.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	47.41 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	27.59 %
Betaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	12.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	4.31 %
Rhodospirillales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	3.45 %
Burkholderiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	2.59 %
Azospirillaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae	2.59 %
Phyllobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae	1.72 %
Comamonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	2.59 %
Mesorhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium	1.72 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1.72 %
Rhodoferax	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	2.59 %
unclassified Mesorhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium	1.72 %
Rhodoferax ferrireducens	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → Rhodoferax ferrireducens	0.86 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	52.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	12.93 %
Azospirillum	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	2.59 %
Mesorhizobium sp.	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	1.72 %
Rhodoferax ferrireducens T118	strain	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → Rhodoferax ferrireducens → Rhodoferax ferrireducens T118	0.86 %
Bradyrhizobium japonicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
3300003218\|JGI26339J46600_10073563	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	872	Open in IMG/M
3300003219\|JGI26341J46601_10123191	Not Available	740	Open in IMG/M
3300004080\|Ga0062385_10305803	Not Available	913	Open in IMG/M
3300004080\|Ga0062385_11283976	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	503	Open in IMG/M
3300004091\|Ga0062387_100367089	Not Available	957	Open in IMG/M
3300004091\|Ga0062387_101298176	Not Available	575	Open in IMG/M
3300004092\|Ga0062389_100119762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales	2392	Open in IMG/M
3300004152\|Ga0062386_100457516	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1033	Open in IMG/M
3300004152\|Ga0062386_101192289	Not Available	633	Open in IMG/M
3300004635\|Ga0062388_102288228	Not Available	564	Open in IMG/M
3300005471\|Ga0070698_102159600	Not Available	510	Open in IMG/M
3300009012\|Ga0066710_103130940	Not Available	638	Open in IMG/M
3300009088\|Ga0099830_11052037	Not Available	674	Open in IMG/M
3300010048\|Ga0126373_12833854	Not Available	541	Open in IMG/M
3300010339\|Ga0074046_10081572	Not Available	2101	Open in IMG/M
3300010341\|Ga0074045_10057017	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	2803	Open in IMG/M
3300010341\|Ga0074045_10223851	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1252	Open in IMG/M
3300010343\|Ga0074044_10080510	Not Available	2201	Open in IMG/M
3300010343\|Ga0074044_10086372	Not Available	2117	Open in IMG/M
3300010343\|Ga0074044_10528343	Not Available	770	Open in IMG/M
3300010343\|Ga0074044_11015103	Not Available	544	Open in IMG/M
3300010366\|Ga0126379_11527980	Not Available	773	Open in IMG/M
3300010376\|Ga0126381_100489512	Not Available	1732	Open in IMG/M
3300011270\|Ga0137391_10854318	Not Available	747	Open in IMG/M
3300012203\|Ga0137399_10622426	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	908	Open in IMG/M
3300012203\|Ga0137399_11155557	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	652	Open in IMG/M
3300012205\|Ga0137362_10197610	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1730	Open in IMG/M
3300012361\|Ga0137360_10133630	All Organisms → cellular organisms → Bacteria	1946	Open in IMG/M
3300012362\|Ga0137361_11780368	Not Available	534	Open in IMG/M
3300012362\|Ga0137361_11881667	Not Available	515	Open in IMG/M
3300012363\|Ga0137390_10648797	Not Available	1020	Open in IMG/M
3300012971\|Ga0126369_10891142	All Organisms → cellular organisms → Bacteria	975	Open in IMG/M
3300016270\|Ga0182036_11048936	Not Available	673	Open in IMG/M
3300016319\|Ga0182033_10058674	All Organisms → cellular organisms → Bacteria	2650	Open in IMG/M
3300016319\|Ga0182033_11030217	Not Available	733	Open in IMG/M
3300016341\|Ga0182035_10190016	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1615	Open in IMG/M
3300016422\|Ga0182039_11308600	Not Available	657	Open in IMG/M
3300016422\|Ga0182039_12255180	Not Available	503	Open in IMG/M
3300016422\|Ga0182039_12273761	Not Available	501	Open in IMG/M
3300017822\|Ga0187802_10133166	Not Available	945	Open in IMG/M
3300018085\|Ga0187772_10031953	Not Available	3134	Open in IMG/M
3300018086\|Ga0187769_10026313	All Organisms → cellular organisms → Bacteria	3913	Open in IMG/M
3300020579\|Ga0210407_10181897	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1629	Open in IMG/M
3300020580\|Ga0210403_10004509	All Organisms → cellular organisms → Bacteria	11987	Open in IMG/M
3300020580\|Ga0210403_10160126	All Organisms → cellular organisms → Bacteria	1842	Open in IMG/M
3300021088\|Ga0210404_10348688	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	822	Open in IMG/M
3300021170\|Ga0210400_10602483	Not Available	906	Open in IMG/M
3300021405\|Ga0210387_10163441	All Organisms → cellular organisms → Bacteria	1913	Open in IMG/M
3300027698\|Ga0209446_1002535	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Phyllobacteriaceae → Mesorhizobium → unclassified Mesorhizobium → Mesorhizobium sp.	4448	Open in IMG/M
3300027698\|Ga0209446_1003585	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	3793	Open in IMG/M
3300027698\|Ga0209446_1007776	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2625	Open in IMG/M
3300027729\|Ga0209248_10047016	Not Available	1328	Open in IMG/M
3300027783\|Ga0209448_10037954	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1617	Open in IMG/M
3300027783\|Ga0209448_10068291	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1195	Open in IMG/M
3300027783\|Ga0209448_10243782	Not Available	593	Open in IMG/M
3300027783\|Ga0209448_10265433	Not Available	565	Open in IMG/M
3300027812\|Ga0209656_10088682	Not Available	1646	Open in IMG/M
3300027824\|Ga0209040_10001838	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	16793	Open in IMG/M
3300027824\|Ga0209040_10322720	All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria → Burkholderiales → Comamonadaceae → Rhodoferax → Rhodoferax ferrireducens → Rhodoferax ferrireducens T118	743	Open in IMG/M
3300028047\|Ga0209526_10667081	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	659	Open in IMG/M
3300031231\|Ga0170824_128015481	Not Available	615	Open in IMG/M
3300031446\|Ga0170820_13454691	Not Available	642	Open in IMG/M
3300031474\|Ga0170818_104212160	Not Available	533	Open in IMG/M
3300031545\|Ga0318541_10085616	All Organisms → cellular organisms → Bacteria → Proteobacteria	1673	Open in IMG/M
3300031545\|Ga0318541_10406875	Not Available	761	Open in IMG/M
3300031546\|Ga0318538_10774855	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	521	Open in IMG/M
3300031561\|Ga0318528_10143865	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	1268	Open in IMG/M
3300031564\|Ga0318573_10073038	All Organisms → cellular organisms → Bacteria	1718	Open in IMG/M
3300031573\|Ga0310915_10012408	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	4987	Open in IMG/M
3300031573\|Ga0310915_10018576	All Organisms → cellular organisms → Bacteria	4190	Open in IMG/M
3300031573\|Ga0310915_11283370	Not Available	505	Open in IMG/M
3300031640\|Ga0318555_10162827	All Organisms → cellular organisms → Bacteria → Proteobacteria	1197	Open in IMG/M
3300031679\|Ga0318561_10716604	Not Available	550	Open in IMG/M
3300031681\|Ga0318572_10669275	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → Bradyrhizobium japonicum	618	Open in IMG/M
3300031708\|Ga0310686_105167827	All Organisms → cellular organisms → Bacteria → Proteobacteria	1865	Open in IMG/M
3300031719\|Ga0306917_10085741	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2224	Open in IMG/M
3300031719\|Ga0306917_10783907	Not Available	748	Open in IMG/M
3300031736\|Ga0318501_10490874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	669	Open in IMG/M
3300031747\|Ga0318502_10619342	All Organisms → cellular organisms → Bacteria	652	Open in IMG/M
3300031764\|Ga0318535_10041081	All Organisms → cellular organisms → Bacteria	1901	Open in IMG/M
3300031770\|Ga0318521_10206276	All Organisms → cellular organisms → Bacteria	1136	Open in IMG/M
3300031771\|Ga0318546_10055670	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2478	Open in IMG/M
3300031778\|Ga0318498_10402966	Not Available	608	Open in IMG/M
3300031780\|Ga0318508_1221860	Not Available	542	Open in IMG/M
3300031793\|Ga0318548_10121175	All Organisms → cellular organisms → Bacteria	1264	Open in IMG/M
3300031832\|Ga0318499_10075166	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	1288	Open in IMG/M
3300031845\|Ga0318511_10509783	Not Available	557	Open in IMG/M
3300031860\|Ga0318495_10402147	Not Available	603	Open in IMG/M
3300031890\|Ga0306925_10144016	Not Available	2563	Open in IMG/M
3300031890\|Ga0306925_11593040	Not Available	635	Open in IMG/M
3300031893\|Ga0318536_10359474	All Organisms → cellular organisms → Bacteria	737	Open in IMG/M
3300031894\|Ga0318522_10160150	Not Available	849	Open in IMG/M
3300031894\|Ga0318522_10255154	Not Available	665	Open in IMG/M
3300031896\|Ga0318551_10952265	Not Available	502	Open in IMG/M
3300031897\|Ga0318520_10872462	All Organisms → cellular organisms → Bacteria	566	Open in IMG/M
3300031912\|Ga0306921_10476273	All Organisms → cellular organisms → Bacteria	1453	Open in IMG/M
3300031912\|Ga0306921_10612962	Not Available	1258	Open in IMG/M
3300031912\|Ga0306921_11623978	Not Available	702	Open in IMG/M
3300031946\|Ga0310910_10043090	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3145	Open in IMG/M
3300031946\|Ga0310910_10298153	Not Available	1268	Open in IMG/M
3300031946\|Ga0310910_10978077	Not Available	662	Open in IMG/M
3300031962\|Ga0307479_11105950	Not Available	759	Open in IMG/M
3300032035\|Ga0310911_10253118	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1009	Open in IMG/M
3300032035\|Ga0310911_10405910	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	788	Open in IMG/M
3300032035\|Ga0310911_10560247	All Organisms → cellular organisms → Bacteria	663	Open in IMG/M
3300032039\|Ga0318559_10168486	Not Available	1000	Open in IMG/M
3300032060\|Ga0318505_10142048	Not Available	1109	Open in IMG/M
3300032060\|Ga0318505_10213723	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	904	Open in IMG/M
3300032063\|Ga0318504_10321080	Not Available	734	Open in IMG/M
3300032064\|Ga0318510_10493127	Not Available	530	Open in IMG/M
3300032065\|Ga0318513_10183295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodospirillales → Azospirillaceae → Azospirillum	1006	Open in IMG/M
3300032076\|Ga0306924_10140565	All Organisms → cellular organisms → Bacteria → Proteobacteria	2760	Open in IMG/M
3300032076\|Ga0306924_10219623	Not Available	2182	Open in IMG/M
3300033290\|Ga0318519_10207399	All Organisms → cellular organisms → Bacteria	1120	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	100.00%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	81.03%
Aquatic	Environmental → Aquatic	18.97%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	81.03%
Freshwater	Environmental → Aquatic → Freshwater	18.97%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	71.55%
Wetlands	Environmental → Aquatic → Freshwater → Wetlands	18.97%
Wetlands	Environmental → Terrestrial → Soil → Wetlands	7.76%
Loam	Environmental → Terrestrial → Soil → Loam	1.72%

Habitat	Taxonomy	Distribution
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	58.62%
Bog	Environmental → Aquatic → Freshwater → Wetlands → Bog	18.10%
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	12.07%
Unclassified	Environmental → Terrestrial → Soil → Wetlands → Unclassified	7.76%
Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment	0.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.86%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	41.38%
Bog Forest Soil	Environmental → Aquatic → Freshwater → Wetlands → Bog → Bog Forest Soil	18.10%
Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil	13.79%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	7.76%
Bog Forest Soil	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Bog Forest Soil	6.03%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	3.45%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Forest Soil	2.59%
Tropical Peatland	Environmental → Terrestrial → Soil → Wetlands → Unclassified → Tropical Peatland	1.72%
Freshwater Sediment	Environmental → Aquatic → Freshwater → Wetlands → Sediment → Freshwater Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	0.86%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Forest Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
3300003218	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM1	Environmental	Open in IMG/M
3300003219	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3	Environmental	Open in IMG/M
3300004080	Coassembly of ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300004091	Coassembly of ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004092	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3, ECP14_OM1, ECP14_OM2, ECP14_OM3	Environmental	Open in IMG/M
3300004152	Coassembly of ECP12_OM1, ECP12_OM2, ECP12_OM3	Environmental	Open in IMG/M
3300004635	Coassembly of ECP03_0M1, ECP03_OM2, ECP03_OM3, ECP04_OM1, ECP04_OM2, ECP04_OM3	Environmental	Open in IMG/M
3300005471	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009088	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - CZOApr15con2H3.8 metaG	Environmental	Open in IMG/M
3300010048	Tropical forest soil microbial communities from Panama - MetaG Plot_11	Environmental	Open in IMG/M
3300010339	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM3	Environmental	Open in IMG/M
3300010341	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM2	Environmental	Open in IMG/M
3300010343	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - Bog Forest MetaG ECP23OM1	Environmental	Open in IMG/M
3300010366	Tropical forest soil microbial communities from Panama - MetaG Plot_24	Environmental	Open in IMG/M
3300010376	Tropical forest soil microbial communities from Panama - MetaG Plot_28	Environmental	Open in IMG/M
3300011270	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4B metaG	Environmental	Open in IMG/M
3300012203	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz3.16 metaG	Environmental	Open in IMG/M
3300012205	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_100_16 metaG	Environmental	Open in IMG/M
3300012361	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_60_16 metaG	Environmental	Open in IMG/M
3300012362	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_80_16 metaG	Environmental	Open in IMG/M
3300012363	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - 15con2h2.4A metaG	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300016270	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080	Environmental	Open in IMG/M
3300016319	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.00H	Environmental	Open in IMG/M
3300016341	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux4day.12C.oxic.44.000.170	Environmental	Open in IMG/M
3300016422	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111	Environmental	Open in IMG/M
3300017822	Wetland sediment microbial communities from Neuse River Estuary, North Carolina, USA - Control_2	Environmental	Open in IMG/M
3300018085	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP15_20_MG	Environmental	Open in IMG/M
3300018086	Tropical peat soil microbial communities from peatlands in Department of Meta, Colombia - 0116_SJ02_MP02_10_MG	Environmental	Open in IMG/M
3300020579	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-27-M	Environmental	Open in IMG/M
3300020580	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-19-M	Environmental	Open in IMG/M
3300021088	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-28-M	Environmental	Open in IMG/M
3300021170	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-26-M	Environmental	Open in IMG/M
3300021405	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-O	Environmental	Open in IMG/M
3300027698	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027729	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP04_OM1 (SPAdes)	Environmental	Open in IMG/M
3300027783	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP14_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027812	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM2 (SPAdes)	Environmental	Open in IMG/M
3300027824	Bog forest soil microbial communities from Calvert Island, British Columbia, Canada - ECP12_OM3 (SPAdes)	Environmental	Open in IMG/M
3300028047	Forest soil microbial communities from Algoma, Ontario, Canada - Jack Pine, Ontario site 1_JW_OM2H0_M1 (SPAdes)	Environmental	Open in IMG/M
3300031231	Coassembly Site 11 (all samples) - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031446	Fir Summer Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031474	Fir Coassembly Site 11 - Champenoux / Amance forest	Environmental	Open in IMG/M
3300031545	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f26	Environmental	Open in IMG/M
3300031546	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.166b4f23	Environmental	Open in IMG/M
3300031561	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.052b4f26	Environmental	Open in IMG/M
3300031564	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f21	Environmental	Open in IMG/M
3300031573	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111	Environmental	Open in IMG/M
3300031640	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f23	Environmental	Open in IMG/M
3300031679	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f23	Environmental	Open in IMG/M
3300031681	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.089b5f20	Environmental	Open in IMG/M
3300031708	FICUS49499 Metagenome Czech Republic combined assembly	Environmental	Open in IMG/M
3300031719	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - timezero.00C.oxic.00.000.000 (v2)	Environmental	Open in IMG/M
3300031736	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f21	Environmental	Open in IMG/M
3300031747	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.174b1f22	Environmental	Open in IMG/M
3300031764	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f27	Environmental	Open in IMG/M
3300031770	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f17	Environmental	Open in IMG/M
3300031771	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f19	Environmental	Open in IMG/M
3300031778	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f24	Environmental	Open in IMG/M
3300031780	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f21	Environmental	Open in IMG/M
3300031793	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.169b2f21	Environmental	Open in IMG/M
3300031832	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.109b1f25	Environmental	Open in IMG/M
3300031845	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f18	Environmental	Open in IMG/M
3300031860	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.108b1f25	Environmental	Open in IMG/M
3300031890	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176 (v2)	Environmental	Open in IMG/M
3300031893	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.117b4f28	Environmental	Open in IMG/M
3300031894	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f18	Environmental	Open in IMG/M
3300031896	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.082b2f19	Environmental	Open in IMG/M
3300031897	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f16	Environmental	Open in IMG/M
3300031912	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statoxic.12C.oxic.44.000.080 (v2)	Environmental	Open in IMG/M
3300031946	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF172	Environmental	Open in IMG/M
3300031962	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesECM4C_515	Environmental	Open in IMG/M
3300032035	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.HF170	Environmental	Open in IMG/M
3300032039	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.065b5f21	Environmental	Open in IMG/M
3300032059	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.053b4f27	Environmental	Open in IMG/M
3300032060	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f18	Environmental	Open in IMG/M
3300032063	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.084b2f17	Environmental	Open in IMG/M
3300032064	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f17	Environmental	Open in IMG/M
3300032065	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.171b2f20	Environmental	Open in IMG/M
3300032076	Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111 (v2)	Environmental	Open in IMG/M
3300033290	Tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.178b2f15	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
JGI26339J46600_100735632	3300003218	Bog Forest Soil	MADGPLRRLFWRVTDQLDYLVTLALLRILDAVCGPEPETSADRQRQRDRERTRTAFPEIEP*
JGI26341J46601_101231911	3300003219	Bog Forest Soil	MADGPLRRLFWRVADHLGYLLTPVWLRIPDAVCGPEPETPADQQRERDRERIERAFPEIER*
Ga0062385_103058032	3300004080	Bog Forest Soil	MADGTLQRLFWRVADQLDYLVTLARLRILDALAGPLPETPADRQRQRYRERIKRTFPEIEA*
Ga0062385_112839762	3300004080	Bog Forest Soil	MADGRLRQLFWRVADKLDYLVTLVRLRMLDALAGPLPETSANRQREQDRERLRKAFPKI
Ga0062387_1003670892	3300004091	Bog Forest Soil	MAEGPTARLSWRVADQLDYLVTLARLRILDALAGPLPETLADRQRQRDRERIERAFPEIEPRGARHRGSPGSD*
Ga0062387_1012981761	3300004091	Bog Forest Soil	MTDGPKACLFWRGLDRADYWLTLARLRILDALAGPLPETPADRRRRQDRERIKRAFPEIEP*
Ga0062389_1001197625	3300004092	Bog Forest Soil	MTDTRPGRLFWRVADQLDYLVTLARVRILDALAGPEPETSADEQRQRDREKIERAFPEIEP*
Ga0062386_1004575161	3300004152	Bog Forest Soil	GVRAMTKGRLRRLFWRVADALDYHVTLLRLRILDALAGPLPEIPADQQRARDRERIERVFPKIEP*
Ga0062386_1011922891	3300004152	Bog Forest Soil	GDIMAMADGRLRRLFWRVADVLDYLWTLTRLRILGAIVGPEPEAPADQQRAQDRERIERAFPEIEP*
Ga0062388_1022882281	3300004635	Bog Forest Soil	RLFSRALDRVDYWLTLAWLRTLDALAGPEPETPADQQRQRDRKRMKRAFPEIEP*
Ga0070698_1021596001	3300005471	Corn, Switchgrass And Miscanthus Rhizosphere	VAMAARRLARLFWRVVDALDYLATLTRLRILDMLAGPEPATPADQQRERDRIERAFPEIAPPKSGRRDRG*
Ga0066710_1031309401	3300009012	Grasslands Soil	MTEGPLRRLFWRVVDPLHYLLMLAWLRILDTLAGPDPETADQERQRERERIERAFPKIEP
Ga0099830_110520372	3300009088	Vadose Zone Soil	MSDGLLARFSWRVVDALDYLVTLAWLRILDRLGGPEPETPADEQWKRDREQIERAFPKIEP*
Ga0126373_128338541	3300010048	Tropical Forest Soil	MPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER*
Ga0074046_100815722	3300010339	Bog Forest Soil	MADGPLRRLFWRVVDHLDYLLKLARLRILDVLAGPEPETPAGQWRKWDREQIERTFPEIEP*
Ga0074045_100570174	3300010341	Bog Forest Soil	MADGPLRRLFWLVADHLGYLLTLVWLRIPDAVCGPEPETPADQQRERDRERIERAFPEIER*
Ga0074045_102238512	3300010341	Bog Forest Soil	MADGPLRRLFWRAVDHLDYLLKLGRLRILDVLAGPEPETPAGQRRKRDREQIERAFPEIEP*
Ga0074044_100805103	3300010343	Bog Forest Soil	MGRGPLRRFFWRVADALDYLLTLARLRVLDPPAGPEPETPADQQWRWDRERIESAFPEIGG*
Ga0074044_100863721	3300010343	Bog Forest Soil	GRLFWRVADQLDYLVTLARLRILDALAGPLPETPADRQRQRDHEKIERAFPEIEP*
Ga0074044_105283431	3300010343	Bog Forest Soil	MAEGPLRRLSWRVADALDYLWTLKRLRILDALAGPEPETPADLKRKRDRERLERGFPGIEP*
Ga0074044_110151031	3300010343	Bog Forest Soil	MIDRPLYRPFWRVVDHLDYLVTLSKLRILDAVCGPLPETSADQQQARDRERLKKAFPKIRP*
Ga0126379_115279802	3300010366	Tropical Forest Soil	MTEGWLRQLFWRVADHLDYLVTLVRLRILDALAGPLPETPADRQREQDRERIKRAFPEVEP*
Ga0126381_1004895122	3300010376	Tropical Forest Soil	MGRGPLRRFFWRVADDLDYLRTLATLRILDALPGPLPETPADQQRERDWGRLEGRSPRL*
Ga0137391_108543182	3300011270	Vadose Zone Soil	MADGALRRLFWRLVDGLDYLLTLAWLRILDALASPEPETPADQQRERDRERIERAFPKIEK*
Ga0137399_106224261	3300012203	Vadose Zone Soil	MAMIDGPLRRIFWRMADALAYVLTLAWLRILDALAGPEPESPADEQREYDREQIAKAFPSASGRGG*
Ga0137399_111555572	3300012203	Vadose Zone Soil	LTRDYGASSGAADGLGYWLTLARLRILDAVAGPLPETPADQQRKRDRERMERAFPEIEP*
Ga0137362_101976103	3300012205	Vadose Zone Soil	MPGGVASGMAMIDGPLRRLFWRVADALGYLLTLVWLSILDALAGPEPETAADQERQREREQIERAFPKIEQ*
Ga0137360_101336302	3300012361	Vadose Zone Soil	MPGGVASGMGMIDGPLRRLFWRVADALGYLLTLVSLRILDALAGPEPETAADQERQREREQIERAFPKIEQ*
Ga0137361_117803682	3300012362	Vadose Zone Soil	VAMPDGRLRRLFWRVADALDYLVTVARLRILDMLAGPEPETPADQQRERDRDRERIERGVPRDRA*
Ga0137361_118816671	3300012362	Vadose Zone Soil	MLDTGLRRFFWRIADGLGYWLTLARLRILDAVAGPLPETPADQQRKRDRERMERAFPEIEP*
Ga0137390_106487971	3300012363	Vadose Zone Soil	MADGPLRRLFWRMVDALDYLLTLARMRILDKLAGPEPETPADEQREGDRKRIERASPENRAVTSWAPK*
Ga0126369_108911423	3300012971	Tropical Forest Soil	LRRVFWRDADQLDYLVTLARLRILDALTGALPETAADRQWQRDLERIKRAFPEIER*
Ga0182036_110489362	3300016270	Soil	MADGLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPETPADQQLQRDRERIERMRSSVIGC
Ga0182033_100586741	3300016319	Soil	TGPCRQAVGVCAVADGRLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0182033_110302171	3300016319	Soil	MADRPLRRLFWRVADDLDYLWTLATLRILDAAVGPEPETPADQQRALDRERIKRAFP
Ga0182035_101900161	3300016341	Soil	VRAVADAPFRCLFWRVADAFDYLLMLVRLRALDALAGPEPETPADRQRERDRERIERAFPRLDSEEPGAV
Ga0182039_113086002	3300016422	Soil	MMADGWLRQLFWRMVDHLDYVVTLVRLRILDALAGPFPETPADRQREQDRERIKRAFPEVEP
Ga0182039_122551801	3300016422	Soil	LFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0182039_122737611	3300016422	Soil	LRQLFWRVADKLDYLVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0187802_101331661	3300017822	Freshwater Sediment	MADARLRRLFWHVVDALDYLPTLARLRVLDALAGPEPETAADKQRKRDRERMERVFPKIE
Ga0187772_100319534	3300018085	Tropical Peatland	MADARLRRLFWHVVDALDYFLTLARLRVLDALAGPEPETAADQQRKRDRERMERVLPKIE
Ga0187769_100263133	3300018086	Tropical Peatland	MADARLRRLFWHVVDALDYFLTLARLRVLDALAGPEPETAADQQRKRDRERMERVFPKIE
Ga0210407_101818971	3300020579	Soil	MAMLETGLRRLFGRVVDGLDYVQTLVRLRILDAVAGPEPETSADQRREAGRERMQRAFPEIEP
Ga0210403_100045099	3300020580	Soil	VATGRLRRLFWRVADVLDYLWTLATLRILDALAGPLPETPADEQRARDREQIKRAFPTIE
Ga0210403_101601261	3300020580	Soil	VCAVVDGRLRQLFWRVADDLDYLWTLANLRMLDALAGPLPETPADRQRQRDRETLKRAFPEIEP
Ga0210403_107694311	3300020580	Soil	MAMLDTALRRLFWSIVDHLDYVLTLVRLRILDAVAGPEPETPADQKREKGR
Ga0210404_103486882	3300021088	Soil	MAILDAGIRRFFWRVADGLDYVLTLVRLRILDAVAGPEPETSADQRREAGRERMQRAFPEIEP
Ga0210400_106024831	3300021170	Soil	MFDTGLRRVLWRVVDGLDYVQTLVRLRILDAVAGPEPETSADQRREAGRERMQRAFPEIE
Ga0210387_101634411	3300021405	Soil	MARGRLARFFWRVVGALDYFLTLARLRILDALARPEPETRADQQRARDRELIERAFPAIEPKSGGT
Ga0209446_10025353	3300027698	Bog Forest Soil	MADGPLRRLFWRVADHLGYLLTPVWLRIPDAVCGPEPETPADQQRERDRERIERAFPEIE
Ga0209446_10035858	3300027698	Bog Forest Soil	MADGPLRRLFWRVTDQLDYLVTLALLRILDAVCGPEPETSADRQRQRDRERTRTAFPEIE
Ga0209446_10077762	3300027698	Bog Forest Soil	MADGPLRRLFWRAVDHLDYLLKLARLRILDVLAGPEPETPAGQRRKRDREQIERAFPEIE
Ga0209248_100470162	3300027729	Bog Forest Soil	MADGTLQRLFWRVADQLDYLVTLARLRILDALAGPLPETPADRQRQRYRERIKRTFPEIE
Ga0209448_100379541	3300027783	Bog Forest Soil	MAEGPTARLSWRVADQLDYLVTLARLRILDALAGPLPETLADRQRQRDRERIERAFPEIEPRGARHRGSPGSD
Ga0209448_100682912	3300027783	Bog Forest Soil	MADGPLRRLFWRAVDHLDYLLKLARLRILDVLAGPEPETPAGQWRKWDREQIERAFPEIE
Ga0209448_102437822	3300027783	Bog Forest Soil	MTDGPKACLFWRGLDRADYWLTLARLRILDALAGPLPETPADRRRRQDRERIKRAFPEIE
Ga0209448_102654331	3300027783	Bog Forest Soil	MADGPFRCLFWRVADQLDYLVTLASLRILDAVCGPEPETPADQQRQWDRERIKRTFPEIE
Ga0209656_100886822	3300027812	Bog Forest Soil	MADGPLRRLFWRVVDHLDYLLKLARLRILDVLAGPEPETPAGQRRKRDREQIERAFPEIE
Ga0209040_1000183814	3300027824	Bog Forest Soil	MADGPLRRLFWRAVDHLDYLLKLGRLRILDVLAGPEPETPAGQRRKRDREQIERAFPEIE
Ga0209040_103227202	3300027824	Bog Forest Soil	MTKGRLRRLFWRVADALDYHVTLLRLRILDALAGPLPEIPADQQRARDRERIERVFPKIE
Ga0209526_106670812	3300028047	Forest Soil	MAMLDTALRRLFWRVVDHLDYVLTLVRLRVLDAVAGPEPVTPADQKREKDREQIEREFPKIATPED
Ga0170824_1280154812	3300031231	Forest Soil	VTTGRLRRLFWRVADDLHYFWTLATLRILDALAGPLPETPADQRRARDRERIERAFPTIE
Ga0170820_134546911	3300031446	Forest Soil	VGAASKGLLRRSFWRVADRLDYLWTLATLCILDALAGPLPETEADRQRARDQERVEKAFHRNR
Ga0170818_1042121601	3300031474	Forest Soil	VATGRLRHLFWRVADEFHYLWTLATLRILDALARPLPETPADEERQRDRERIKKAFPEIG
Ga0318541_100856163	3300031545	Soil	MPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0318541_104068751	3300031545	Soil	VGVRSMADGLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPETPADQQLQRDRERIERMRSSVIGC
Ga0318538_107748552	3300031546	Soil	VATGLPRRLFWRVADDLDYLWTLVRLRILDALAGLLPGTTADQQRTQDRERIKRAFPQIE
Ga0318528_101438651	3300031561	Soil	VCAVADGRLRQLFWRVADQLDYVVTLARLRILDALAGPLAETPADRQRRQDRERLRKAFPEIEP
Ga0318573_100730383	3300031564	Soil	MADRPLRRLFWRVADDLDYLWTLATLRILDAAVGPEPETPADQQRALDRERIKRAFPEIE
Ga0310915_100124082	3300031573	Soil	VADGRLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIE
Ga0310915_100185766	3300031573	Soil	VADGRLRQLFWRVADQLDYVVTLARLRILDALAGPLAETPADRQRRQDRERLRKAFPEIE
Ga0310915_112833702	3300031573	Soil	DALDCFLTLARLRILDALAGPEPETPADQQRKRARERIERCV
Ga0318555_101628271	3300031640	Soil	TVGVRAMADRPLRRLFWRVADDLDYLWTLATLRILDAAVGPEPETPADQQRALDRERIKRAFPEIER
Ga0318561_107166041	3300031679	Soil	VRAVADALFRCLFWRVADAFDYLLMLVRLRALDALAGPEPETPADRQRERDRERIERAFPRLDSEEPGAV
Ga0318572_106692752	3300031681	Soil	LNVCQAITERLRRLFWRVTDALDYLVTRVRLRILGALAGPEPETLADQQRKQDRERVKRAFSEIEP
Ga0310686_1051678274	3300031708	Soil	VATGRLRRLSWRVADDLDYLWTLATLRILDWLAGPLPETPADQQRDRDRERLRRAFPEIE
Ga0306917_100857413	3300031719	Soil	MADGRLRQLFWRVLDRAECWLTLARLRILDALAGPLPETPADQRRARDREKIKRAFPEIE
Ga0306917_107839072	3300031719	Soil	GLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPKTPADQQLQRDRERIERMRSSVIGC
Ga0318501_104908742	3300031736	Soil	FRCLFWRVADDLDYLWTLATLRILDALAGPLPETEADQQRARDRERIERAFPEIGG
Ga0318502_106193423	3300031747	Soil	MGRGPLRRFFWRMVDALDYFLTLASLRILDALAGPLPETEAERRREQDRERLERAFPEIERWGVTRR
Ga0318535_100410812	3300031764	Soil	AVGVCAVADGRLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0318521_102062761	3300031770	Soil	MGRGPLRRFFWRMVDALDYFLTLASLRILDALAGPLPETEAERRREQDRERLERAFPEIERWGVTR
Ga0318546_100556701	3300031771	Soil	MTKGQLRRLFWRVADGLDYLVTLARLRILDAIVGHEPETPADQQRARDRER
Ga0318498_104029661	3300031778	Soil	VRAMADGPLRRLFWRVADDLDYLVTLARRRIMDALAGPEPETPADQQRARDRERIEKAFP
Ga0318508_12218602	3300031780	Soil	VRAMADGPLRRLFWRVADDLDYLVTLARRRIMDALAGPEPETPADQQRARDRERIEKAFPETEREQPN
Ga0318548_101211751	3300031793	Soil	VCAVADGRLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0318499_100751663	3300031832	Soil	IEGGCGRRLFWRVADHLDYLLTLARLRTLDALAGPLPETPADQQRQWDRERIARAFPEIE
Ga0318511_105097831	3300031845	Soil	MPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRKRARERIERCV
Ga0318495_104021471	3300031860	Soil	MADGPQRRLFWRVADLDYLVTLAMRRILDALAGPEPETPADQQRARDRERIEKAFPETSVSSRTP
Ga0306925_101440162	3300031890	Soil	MMADGWLRQLFWRMVDHLDYVVTLVRLRILDALAGPLPETPADRQREQDRERLKRAFPEVEP
Ga0306925_115930402	3300031890	Soil	MADGLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPKTPADQQLQRDRERIERMRSSVIGC
Ga0318536_103594742	3300031893	Soil	MADRPLRRLFWRVADDLDYLWTLATRRILDAAVGPEPETPADQQRALDRERIKRAFPEIE
Ga0318522_101601503	3300031894	Soil	VGVCAVADGRLRQLFWRVADKLDYLVTLVRLRILDALAGPLQERSADQRRARERIESLR
Ga0318522_102551542	3300031894	Soil	IVATGRLRRLFWRVADDLDYLVTLTRLRVLDAIVGPLPETPADQQCEQDRERLRKAFPEIEP
Ga0318551_109522652	3300031896	Soil	MAEGPRSRLFWRVADHLDYLVTVAGLRILDALAGPEPEADGDRQRYRDRERLRAAFPKINEEPGGIV
Ga0318520_108724622	3300031897	Soil	LPRRLFWRVADDLDYLWTLVRLRILDALAGLLPGTTADQQRTQDRERIKRAFPQIEP
Ga0306921_104762732	3300031912	Soil	MARRPLRRLFWRVADQLDYLVTLAWLRILDALAGSLPETPADWRRQWDRERIERAFPEIE
Ga0306921_106129622	3300031912	Soil	RSMADGLPRRLFWRMADDLDYLVTLVRLRILDALAGPEPETPADQQLQRDRERIERMRSSVIGC
Ga0306921_116239782	3300031912	Soil	MADRPLRFLFWRVADALDYLLTLVRLRALDALAGPEPETPADRQRERDRERIERAFPRLDSEEPGAV
Ga0310910_100430906	3300031946	Soil	RLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0310910_102981534	3300031946	Soil	RQLFWRVLDRAECWLTLARLRILDALAGPLPETPADQRRARDREKIKRAFPEIEL
Ga0310910_109780771	3300031946	Soil	LPRRLFWRMADDLDYLVTLVRLRILDALAGPEPETPADQQLQRDRERIERMRSSVIGC
Ga0307479_111059501	3300031962	Hardwood Forest Soil	TAMFDTGLRRVLWRVVDHLDYLLTLVRLRILDAVAGPEPETSTDQRREAGRERMQRAFPEIEP
Ga0310911_102531182	3300032035	Soil	VGVRAMPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIE
Ga0310911_104059101	3300032035	Soil	RRLFWRVADALDYLVTLLRLRILDALAGPLPETPADQQRARDRERLRRAFPEIEP
Ga0310911_105602472	3300032035	Soil	QTVGVRAMADRPLRRLFWRVADDLDYLWTLATLRILDAAVGPEPETPADQQRALDRERIKRAFPEIER
Ga0318559_101684862	3300032039	Soil	TDPRRGRLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0318533_101169404	3300032059	Soil	VRAVADALFRCLFWRVADAFDYLLMLVRLRALDALAGPEPETPADRQGSGDRERIERAF
Ga0318505_101420482	3300032060	Soil	RLRKLFWRAADQLDYVVTLVRLRILDALAGPLPETSADQQRQRDRETQKRAFPEIEP
Ga0318505_102137231	3300032060	Soil	PRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0318504_103210802	3300032063	Soil	MPRLFWRVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPE
Ga0318510_104931272	3300032064	Soil	FWRVADALDCFLTLARLRILDALAGPEPETPADQQRKRARERIERCD
Ga0318513_101832952	3300032065	Soil	RVADALDYFLTLARLRILDALAGPEPETPADQQRERDQERLERAFPEIER
Ga0306924_101405652	3300032076	Soil	LFGRVTDQLDRLVTLGRLRVLDALAGPFPETPADRQREQDRERIKRAFPEVEP
Ga0306924_102196234	3300032076	Soil	VRAMADGPLRRLFWRVADDLDYLVTLARRRIMDALAGPEPETPADQQRARDRERIEKAFPETEREQ
Ga0318519_102073992	3300033290	Soil	VGVCAVADGRLRQLFWRVADQLDYVVTLARLRILDALAGPLAETPADRQRRQDRERLRKAFPEIEP

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078173

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences