Metagenome Family F078299

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078299
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	65 residues
Representative Sequence	MSHWQMYQKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKGERR
Number of Associated Samples	48
Number of Associated Scaffolds	116

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	66.67 %
% of genes near scaffold ends (potentially truncated)	19.83 %
% of genes from short scaffolds (< 2000 bps)	88.79 %
Associated GOLD sequencing projects	44
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.29

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (50.862 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil (58.621 % of family members)
Environment Ontology (ENVO)	Unclassified (58.621 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (68.103 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 0.00% β-sheet: 24.21% Coil/Unstructured: 75.79%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.29
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.29
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 116 Family Scaffolds
PF01717	Meth_synt_2	2.59
PF07366	SnoaL	2.59
PF02371	Transposase_20	1.72
PF00877	NLPC_P60	1.72
PF01699	Na_Ca_ex	0.86
PF07883	Cupin_2	0.86
PF00313	CSD	0.86
PF01544	CorA	0.86
PF13424	TPR_12	0.86
PF13378	MR_MLE_C	0.86
PF13407	Peripla_BP_4	0.86
PF00353	HemolysinCabind	0.86
PF01710	HTH_Tnp_IS630	0.86
PF07228	SpoIIE	0.86
PF00440	TetR_N	0.86
PF00999	Na_H_Exchanger	0.86
PF00144	Beta-lactamase	0.86

COG ID	Name	Functional Category	% Frequency in 116 Family Scaffolds
COG0620	Methionine synthase II (cobalamin-independent)	Amino acid transport and metabolism [E]	2.59
COG0791	Cell wall-associated hydrolase, NlpC_P60 family	Cell wall/membrane/envelope biogenesis [M]	1.72
COG3547	Transposase	Mobilome: prophages, transposons [X]	1.72
COG0025	NhaP-type Na+/H+ or K+/H+ antiporter	Inorganic ion transport and metabolism [P]	0.86
COG0387	Cation (Ca2+/Na+/K+)/H+ antiporter ChaA	Inorganic ion transport and metabolism [P]	0.86
COG0475	Kef-type K+ transport system, membrane component KefB	Inorganic ion transport and metabolism [P]	0.86
COG0530	Ca2+/Na+ antiporter	Inorganic ion transport and metabolism [P]	0.86
COG0598	Mg2+ and Co2+ transporter CorA	Inorganic ion transport and metabolism [P]	0.86
COG1680	CubicO group peptidase, beta-lactamase class C family	Defense mechanisms [V]	0.86
COG1686	D-alanyl-D-alanine carboxypeptidase	Cell wall/membrane/envelope biogenesis [M]	0.86
COG2367	Beta-lactamase class A	Defense mechanisms [V]	0.86
COG3004	Na+/H+ antiporter NhaA	Energy production and conversion [C]	0.86
COG3263	NhaP-type Na+/H+ and K+/H+ antiporter with C-terminal TrkAC and CorC domains	Energy production and conversion [C]	0.86
COG3415	CRISPR-associated protein Csa3, CARF domain	Defense mechanisms [V]	0.86
COG4651	Predicted Kef-type K+ transport protein, K+/H+ antiporter domain	Inorganic ion transport and metabolism [P]	0.86

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
All Organisms	root	All Organisms	49.14 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
cellular organisms	root	All Organisms → cellular organisms	48.28 %
Viruses	superkingdom	All Organisms → Viruses	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	48.28 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
Terrabacteria group	clade	All Organisms → cellular organisms → Bacteria → Terrabacteria group	43.97 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
Actinobacteria	phylum	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	43.10 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
Rubrobacteria	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria	34.48 %
Actinomycetia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	4.31 %
Sphingomonadales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales	0.86 %
Acidimicrobiia	class	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
Rubrobacterales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales	34.48 %
Cryptosporangiales	order	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales	3.45 %
unclassified Acidimicrobiia	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia	0.86 %
Sphingomonadaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
Rubrobacteraceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	34.48 %
Cryptosporangiaceae	family	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae	3.45 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.86 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
unclassified Rubrobacteraceae	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae	18.97 %
Cryptosporangium	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium	3.45 %
environmental samples	no rank	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples	2.59 %
Rubrobacter	genus	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	2.59 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.86 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	50.86 %
Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	18.97 %
Cryptosporangium phraense	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium phraense	3.45 %
uncultured Rubrobacteraceae bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2.59 %
Rubrobacter taiwanensis	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter taiwanensis	0.86 %
Acidimicrobiia bacterium	species	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	0.86 %
Sphingomonas	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	0.86 %
Predicted Viral	clade	All Organisms → Viruses → Predicted Viral	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2140918013\|NODE_2198_length_1323_cov_6.261527	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1355	Open in IMG/M
3300000363\|ICChiseqgaiiFebDRAFT_11066212	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1244	Open in IMG/M
3300000559\|F14TC_108614173	Not Available	537	Open in IMG/M
3300000787\|JGI11643J11755_11808312	Not Available	533	Open in IMG/M
3300000953\|JGI11615J12901_11626969	Not Available	733	Open in IMG/M
3300004016\|Ga0058689_10104248	Not Available	604	Open in IMG/M
3300004479\|Ga0062595_101414412	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter → Rubrobacter taiwanensis	635	Open in IMG/M
3300005562\|Ga0058697_10031614	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1932	Open in IMG/M
3300005562\|Ga0058697_10266384	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	804	Open in IMG/M
3300005562\|Ga0058697_10784709	Not Available	514	Open in IMG/M
3300005562\|Ga0058697_10822947	Not Available	504	Open in IMG/M
3300006918\|Ga0079216_11267574	Not Available	599	Open in IMG/M
3300007790\|Ga0105679_10515188	All Organisms → Viruses → Predicted Viral	1073	Open in IMG/M
3300007790\|Ga0105679_10642070	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	2636	Open in IMG/M
3300007790\|Ga0105679_10815894	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1157	Open in IMG/M
3300009789\|Ga0126307_10018378	All Organisms → cellular organisms → Bacteria	5238	Open in IMG/M
3300009789\|Ga0126307_10054820	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	3118	Open in IMG/M
3300009789\|Ga0126307_10147891	Not Available	1879	Open in IMG/M
3300009789\|Ga0126307_10197142	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1615	Open in IMG/M
3300009789\|Ga0126307_10206894	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Sphingomonadales → Sphingomonadaceae → Sphingomonas	1575	Open in IMG/M
3300009789\|Ga0126307_10224833	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1507	Open in IMG/M
3300009789\|Ga0126307_10241877	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium phraense	1451	Open in IMG/M
3300009789\|Ga0126307_10618541	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	874	Open in IMG/M
3300009789\|Ga0126307_10776979	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	773	Open in IMG/M
3300009789\|Ga0126307_10933140	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	701	Open in IMG/M
3300009789\|Ga0126307_11070527	Not Available	652	Open in IMG/M
3300009789\|Ga0126307_11226603	Not Available	607	Open in IMG/M
3300009789\|Ga0126307_11407637	Not Available	565	Open in IMG/M
3300009840\|Ga0126313_10076205	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2422	Open in IMG/M
3300009840\|Ga0126313_10128032	All Organisms → cellular organisms → Bacteria → Terrabacteria group	1897	Open in IMG/M
3300009840\|Ga0126313_10262493	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1342	Open in IMG/M
3300009840\|Ga0126313_10312453	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	1231	Open in IMG/M
3300009840\|Ga0126313_10426867	Not Available	1054	Open in IMG/M
3300009840\|Ga0126313_10673508	Not Available	837	Open in IMG/M
3300010036\|Ga0126305_10178488	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	1336	Open in IMG/M
3300010036\|Ga0126305_10221363	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1207	Open in IMG/M
3300010036\|Ga0126305_10309914	Not Available	1026	Open in IMG/M
3300010036\|Ga0126305_10456034	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium phraense	849	Open in IMG/M
3300010036\|Ga0126305_10569018	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	760	Open in IMG/M
3300010037\|Ga0126304_10003999	All Organisms → cellular organisms → Bacteria	7494	Open in IMG/M
3300010037\|Ga0126304_10154984	Not Available	1484	Open in IMG/M
3300010037\|Ga0126304_10271708	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1119	Open in IMG/M
3300010037\|Ga0126304_10383460	Not Available	937	Open in IMG/M
3300010037\|Ga0126304_10904328	Not Available	600	Open in IMG/M
3300010038\|Ga0126315_10020337	All Organisms → cellular organisms → Bacteria	3321	Open in IMG/M
3300010038\|Ga0126315_10053187	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2205	Open in IMG/M
3300010038\|Ga0126315_10299055	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	993	Open in IMG/M
3300010038\|Ga0126315_10440245	Not Available	824	Open in IMG/M
3300010038\|Ga0126315_10751575	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	639	Open in IMG/M
3300010038\|Ga0126315_10849086	Not Available	604	Open in IMG/M
3300010038\|Ga0126315_10894746	Not Available	590	Open in IMG/M
3300010039\|Ga0126309_10199625	Not Available	1106	Open in IMG/M
3300010040\|Ga0126308_10050251	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2419	Open in IMG/M
3300010040\|Ga0126308_10174300	Not Available	1371	Open in IMG/M
3300010040\|Ga0126308_10234488	Not Available	1188	Open in IMG/M
3300010040\|Ga0126308_10339756	Not Available	993	Open in IMG/M
3300010040\|Ga0126308_10363283	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	961	Open in IMG/M
3300010040\|Ga0126308_10451651	Not Available	863	Open in IMG/M
3300010040\|Ga0126308_10462259	Not Available	853	Open in IMG/M
3300010040\|Ga0126308_10542925	Not Available	789	Open in IMG/M
3300010040\|Ga0126308_10594339	Not Available	754	Open in IMG/M
3300010040\|Ga0126308_10694581	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	699	Open in IMG/M
3300010040\|Ga0126308_10802030	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	652	Open in IMG/M
3300010040\|Ga0126308_11001579	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia	585	Open in IMG/M
3300010040\|Ga0126308_11040691	Not Available	575	Open in IMG/M
3300010041\|Ga0126312_10529787	Not Available	844	Open in IMG/M
3300010041\|Ga0126312_10598318	Not Available	793	Open in IMG/M
3300010042\|Ga0126314_10236416	Not Available	1294	Open in IMG/M
3300010042\|Ga0126314_10284517	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1178	Open in IMG/M
3300010042\|Ga0126314_10386306	Not Available	1007	Open in IMG/M
3300010042\|Ga0126314_11162047	Not Available	576	Open in IMG/M
3300010044\|Ga0126310_10054416	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2238	Open in IMG/M
3300010044\|Ga0126310_10094619	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1795	Open in IMG/M
3300010044\|Ga0126310_10211671	Not Available	1283	Open in IMG/M
3300010044\|Ga0126310_10686037	Not Available	774	Open in IMG/M
3300010044\|Ga0126310_10707731	Not Available	764	Open in IMG/M
3300010044\|Ga0126310_11587744	All Organisms → cellular organisms → Bacteria	540	Open in IMG/M
3300010045\|Ga0126311_10976183	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	691	Open in IMG/M
3300010045\|Ga0126311_11373151	Not Available	589	Open in IMG/M
3300010045\|Ga0126311_11417090	Not Available	580	Open in IMG/M
3300010166\|Ga0126306_10228300	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Acidimicrobiia → unclassified Acidimicrobiia → Acidimicrobiia bacterium	1414	Open in IMG/M
3300012469\|Ga0150984_110193064	Not Available	555	Open in IMG/M
3300012937\|Ga0162653_100056910	Not Available	614	Open in IMG/M
3300012939\|Ga0162650_100031108	Not Available	817	Open in IMG/M
3300012941\|Ga0162652_100006758	Not Available	1306	Open in IMG/M
3300014487\|Ga0182000_10060825	Not Available	1162	Open in IMG/M
3300014487\|Ga0182000_10124834	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	898	Open in IMG/M
3300014488\|Ga0182001_10262496	Not Available	675	Open in IMG/M
3300018432\|Ga0190275_10255924	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1692	Open in IMG/M
3300018432\|Ga0190275_10743481	Not Available	1041	Open in IMG/M
3300018465\|Ga0190269_10072784	Not Available	1626	Open in IMG/M
3300018466\|Ga0190268_10032743	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium phraense	1866	Open in IMG/M
3300018466\|Ga0190268_10241766	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1028	Open in IMG/M
3300018466\|Ga0190268_10708645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	741	Open in IMG/M
3300018469\|Ga0190270_10074903	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	2482	Open in IMG/M
3300018476\|Ga0190274_10905823	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	949	Open in IMG/M
3300018476\|Ga0190274_11062850	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Cryptosporangiales → Cryptosporangiaceae → Cryptosporangium → Cryptosporangium phraense	887	Open in IMG/M
3300018875\|Ga0193608_1056821	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → environmental samples → uncultured Rubrobacteraceae bacterium	868	Open in IMG/M
3300018918\|Ga0193616_1181874	Not Available	563	Open in IMG/M
3300019767\|Ga0190267_10270797	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → Rubrobacter	857	Open in IMG/M
3300027750\|Ga0209461_10170540	Not Available	540	Open in IMG/M
3300028578\|Ga0272482_10194971	Not Available	619	Open in IMG/M
3300028744\|Ga0307318_10010813	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	2926	Open in IMG/M
3300030510\|Ga0268243_1067698	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria	795	Open in IMG/M
3300030510\|Ga0268243_1120977	Not Available	620	Open in IMG/M
3300030511\|Ga0268241_10026472	Not Available	1162	Open in IMG/M
3300031548\|Ga0307408_100385645	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae	1199	Open in IMG/M
3300031824\|Ga0307413_11981278	Not Available	525	Open in IMG/M
3300031995\|Ga0307409_100656366	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1043	Open in IMG/M
3300031995\|Ga0307409_102308216	Not Available	567	Open in IMG/M
3300032002\|Ga0307416_102176136	Not Available	656	Open in IMG/M
3300032004\|Ga0307414_10890198	Not Available	816	Open in IMG/M
3300032005\|Ga0307411_11929050	Not Available	550	Open in IMG/M
3300032159\|Ga0268251_10021061	All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Rubrobacteria → Rubrobacterales → Rubrobacteraceae → unclassified Rubrobacteraceae → Rubrobacteraceae bacterium	1935	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.07%
Host-Associated	Host-Associated	12.93%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	87.07%
Plants	Host-Associated → Plants	12.93%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	84.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere	6.90%
Phylloplane	Host-Associated → Plants → Phylloplane	4.31%
Agricultural Field	Environmental → Terrestrial → Agricultural Field	2.59%
Phyllosphere	Host-Associated → Plants → Phyllosphere	1.72%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	79.31%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	6.03%
Sand	Environmental → Terrestrial → Soil → Sand	4.31%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified	4.31%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified	2.59%
Phylloplane/Leaf Surface	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface	1.72%
Loam	Environmental → Terrestrial → Soil → Loam	0.86%
Soil	Host-Associated → Plants → Rhizosphere → Soil	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	73.28%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	6.03%
Desert	Environmental → Terrestrial → Soil → Sand → Desert	4.31%
Unclassified	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified	4.31%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	3.45%
Unclassified	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified	2.59%
Agricultural Land	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land	1.72%
Unclassified	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified	1.72%
Uranium Contaminated	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Unclassified	Host-Associated → Plants → Rhizosphere → Soil → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Serpentine Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Serpentine Soil	58.62%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	9.48%
Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Rhizosphere	6.03%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	5.17%
Agave	Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Agave	4.31%
Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil	3.45%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	2.59%
Soil	Environmental → Terrestrial → Agricultural Field → Unclassified → Unclassified → Soil	2.59%
Soil	Environmental → Terrestrial → Soil → Sand → Desert → Soil	1.72%
Agave	Host-Associated → Plants → Phyllosphere → Phylloplane/Leaf Surface → Unclassified → Agave	1.72%
Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Avena Fatua Rhizosphere	Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Avena Fatua Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2140918013	Soil microbial communities from Great Prairies - Iowa soil (MSU Assemblies)	Environmental	Open in IMG/M
3300000363	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000559	Amended soil microbial communities from Kansas Great Prairies, USA - control no BrdU total DNA F1.4 TC clc assemly	Environmental	Open in IMG/M
3300000787	Soil microbial communities from Great Prairies - Iowa, Continuous Corn soil	Environmental	Open in IMG/M
3300000953	Soil microbial communities from Great Prairies - Kansas Corn soil	Environmental	Open in IMG/M
3300004016	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz	Host-Associated	Open in IMG/M
3300004479	Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of All WPAs	Environmental	Open in IMG/M
3300005562	Agave microbial communities from Guanajuato, Mexico - As.Ma.e	Host-Associated	Open in IMG/M
3300006918	Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100	Environmental	Open in IMG/M
3300007790	Microbial communities of desert soil contaminated with blood from dead anthrax infected zebra in Etosha National Park, Namibia. Combined Assembly of 14 sequencing projects	Environmental	Open in IMG/M
3300009789	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot28	Environmental	Open in IMG/M
3300009840	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105A	Environmental	Open in IMG/M
3300010036	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot26	Environmental	Open in IMG/M
3300010037	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot25	Environmental	Open in IMG/M
3300010038	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot106	Environmental	Open in IMG/M
3300010039	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot56	Environmental	Open in IMG/M
3300010040	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot55	Environmental	Open in IMG/M
3300010041	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot104A	Environmental	Open in IMG/M
3300010042	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot105B	Environmental	Open in IMG/M
3300010044	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot60	Environmental	Open in IMG/M
3300010045	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot61	Environmental	Open in IMG/M
3300010166	Serpentine soil microbial communities from UC McLaughlin Reserve, CA, USA - Plot27	Environmental	Open in IMG/M
3300012469	Combined assembly of Soil carbon rhizosphere	Host-Associated	Open in IMG/M
3300012937	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t5i015	Environmental	Open in IMG/M
3300012939	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t1i015	Environmental	Open in IMG/M
3300012941	Agricultural soil microbial communities from Tamara ranch near Red Deer, Alberta, Canada - d1t4i015	Environmental	Open in IMG/M
3300014487	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG	Environmental	Open in IMG/M
3300014488	Bulk soil microbial communities from Mexico - San Felipe (SF) metaG	Environmental	Open in IMG/M
3300018432	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 550 T	Environmental	Open in IMG/M
3300018465	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 IS	Environmental	Open in IMG/M
3300018466	Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 T	Environmental	Open in IMG/M
3300018469	Populus adjacent soil microbial communities from riparian zone of Weber River, Utah, USA - 320 T	Environmental	Open in IMG/M
3300018476	Populus adjacent soil microbial communities from riparian zone of Yellowstone River, Montana, USA - 531 T	Environmental	Open in IMG/M
3300018875	Soil crust microbial communities from Colorado Plateau, Utah, USA - mid-late stage, 49.5 hrs after wetting v1	Environmental	Open in IMG/M
3300018918	Soil crust microbial communities from Colorado Plateau, Utah, USA - early stage, 0 min after wetting v1	Environmental	Open in IMG/M
3300019767	Populus adjacent soil microbial communities from riparian zone of Oak Creek, Arizona, USA - 239 T	Environmental	Open in IMG/M
3300027750	Agave microbial communities from Guanajuato, Mexico - As.Ma.rz (SPAdes)	Host-Associated	Open in IMG/M
3300028578	Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0	Environmental	Open in IMG/M
3300028744	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_367	Environmental	Open in IMG/M
3300030510	Bulk soil microbial communities from Mexico - Magueyal (Ma) metaG (v2)	Environmental	Open in IMG/M
3300030511	Bulk soil microbial communities from Mexico - Amatitan (Am) metaG (v2)	Environmental	Open in IMG/M
3300031548	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3	Host-Associated	Open in IMG/M
3300031824	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2	Host-Associated	Open in IMG/M
3300031995	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2	Host-Associated	Open in IMG/M
3300032002	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3	Host-Associated	Open in IMG/M
3300032004	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3	Host-Associated	Open in IMG/M
3300032005	Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1	Host-Associated	Open in IMG/M
3300032159	Agave microbial communities from Guanajuato, Mexico - As.Ma.e (v2)	Host-Associated	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
Iowa-Corn-GraphCirc_01051190	2140918013	Soil	MYRGAMYRKPKDGQSDTVRVEWGAEQPLEGQVLSYLGGRTYEVAISGQGVKVVQEQPLSPRTKAK
ICChiseqgaiiFebDRAFT_110662123	3300000363	Soil	MYRGAMYRKPKDGQSDTVRVEWGAEQPLEGQVLSYLGGRTYEVAISGQGVKVVQEQPLSPRTKAK*
F14TC_1086141731	3300000559	Soil	MSHWQMYLKPKYVQGDAVWVDRGGEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQALSLRTKGERR*
JGI11643J11755_118083121	3300000787	Soil	MSHWQMYLKPKYVQDDAVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQALSLRTKGERR*
JGI11615J12901_116269692	3300000953	Soil	MSHWQMYQKPKYGQNDTVWVERGAEQQPVKGQVLIYIGRRTYEVALSNQGVRVVQEQALSIRTKGERR*
Ga0058689_101042481	3300004016	Agave	MSHWQMYLKPKYVQDDAVWVDRGAQEPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKGERR*
Ga0062595_1014144121	3300004479	Soil	MSHWQMYQKPKYVQDDTVRVDRGAEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQALSLRTKGHR
Ga0058697_100316143	3300005562	Agave	MSHLQMYQKPKYVQDDTVWVDQGAEQPVKGQVLLYMGRRTYEVALRSQGVRVVQEQAISLRTKGERR*
Ga0058697_102663842	3300005562	Agave	MSPHLQMYQKPKYVQDDTVWVDQGAEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQALSLRTKGQRG*
Ga0058697_107847092	3300005562	Agave	MSHWQMYQKPKYGQDDAVWVEQGAEQQPVKGQVLFYIGRRTYEVALSNQGVRVVQEQALSVRTKGESR*
Ga0058697_108229471	3300005562	Agave	MSRGEMYHKPKYGQTDTVWVEQGAQQPLEGQVLLYLGRATYKVAISAQGVRVVQEQAMSLRSKGQRG*
Ga0079216_112675741	3300006918	Agricultural Soil	MSRGEMYHKPKYGQNDPVWVEWGAEQPLEGQVLRYIGGRTYEVAISGQGVRVVQEQALSLRTKGERR*
Ga0105679_105151882	3300007790	Soil	MYHKPKYGQNDTVWVERGAEQPLEGQVLRYLGGGTYEVAISSQGVRVAEQQALSPRTKDERR*
Ga0105679_106420701	3300007790	Soil	MYRKPKYGQNDTVWAERAAEQPLEGQVLRYLGGGTYEVAISGQGVRVVREQDLSPRSKGESG*
Ga0105679_108158942	3300007790	Soil	MSRGEMYHKPKYGQNDPVWVERGAAQPLEGQVLRYIGGRTYEVAISGQGVRVIQEQALSLRTKGERR*
Ga0126307_100183787	3300009789	Serpentine Soil	MSHWQMYQRPKYVQDDTVWVERGVEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQAMSLRTKGERR*
Ga0126307_100548204	3300009789	Serpentine Soil	MYRGAMYSPPKYGQKDTVWAEWGAEQPLEGQVLCYLGGATYDVAISGPGVRVVQEQALSPRSKDERG*
Ga0126307_101478912	3300009789	Serpentine Soil	MYKKPKYGQADTVWVDRGAEQQPVKGQVLLYIGRRTYEVALSYQGVRVVQEQALSERPKGHRR*
Ga0126307_101971423	3300009789	Serpentine Soil	MSHWQMYQKPKYVQDDAVWVDGGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKGERR*
Ga0126307_102068942	3300009789	Serpentine Soil	VGDRKGIMSHWQMYQKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKDRRR*
Ga0126307_102248332	3300009789	Serpentine Soil	MYRGAIYHKPKYGQNDIVWAERGAEQPLEGQVLCYLGGGTYEVVISGPGVRVVQEQSLSPRSKGERG*
Ga0126307_102418772	3300009789	Serpentine Soil	MSHWQMYQKPKYGQGSTVWVEGGAEQQPVKGQVLLYIGRRTYEVALSNQGVRVVQEQALSLRTKGESR*
Ga0126307_106185411	3300009789	Serpentine Soil	MSPHWQMYLKPKYVQDDAVWVDRGAERPVKGQVLLYIGHRTYEVALSSQGVRVIQEQALSLRTKDERR*
Ga0126307_107769791	3300009789	Serpentine Soil	WQMYQRPKYVQDDTVWVERGVEQPVKGQVLLYIGHRTYEVALSSQGVRVIQEQALSLRTKDERR*
Ga0126307_109331401	3300009789	Serpentine Soil	MSHWQMYRKPKYGQNDTVWVERGAEQQPVKGQVLLYIGRRTYEVALSNQGVRVVQEQALSLRTKGERR*
Ga0126307_110705271	3300009789	Serpentine Soil	MYRGAMYRKPKYGQSDTVRVERRAEQPLEGQVLCYLGGRTYEVAISGQGVRVVQEQALSPRTKAK*
Ga0126307_112266031	3300009789	Serpentine Soil	MYLKPKYVQDDAVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQALSLRTKGERR*
Ga0126307_114076371	3300009789	Serpentine Soil	MSHWQMYQKPKYVQDDAVWVAQGAEQPLKGQVLLYIGHRTYEVALSSQGVRVVQEQALSLRTKGERR*
Ga0126313_100762053	3300009840	Serpentine Soil	MVGMLGRIGGTMYRMEMYHKPKYGQTDAVWVEQRAQQPLEGQVLLYLGGATYKVAISAQGVRVIQEQAMSPRSRGQRG*
Ga0126313_101280322	3300009840	Serpentine Soil	MYQKPKYGQNDTVWVERGAEQQPVKGQVLLYIGRRTYEVALSNQGVRVVQEQALSLRTKGESR*
Ga0126313_102624933	3300009840	Serpentine Soil	MYHKPKYGQTDTVWVEQGAQQHLEGQVLLYLGSRTYKVAIIAQGVRVVQEQAMSLRVKGQRG*
Ga0126313_103124532	3300009840	Serpentine Soil	MYQKPKYVQDDAVWVDGGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLR
Ga0126313_104268671	3300009840	Serpentine Soil	MYQKPKYVQDDTVWVDQGAEQPVKGQVLLYMGHRTYEVALSSQGVRVVQEQALSIRTEGERR*
Ga0126313_106735081	3300009840	Serpentine Soil	MYQKPKYVQDDAVWIEQGEELPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKGQRR*
Ga0126305_101784882	3300010036	Serpentine Soil	MYLKPKYVQDDAVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQAMSLRTKGERR*
Ga0126305_102213631	3300010036	Serpentine Soil	MSPHWQMYLKPKYVRGDTVRVDRGAEQPVKGQVLLYIGHRTYEVALSSQGVRVIQEQALSLRTKDERR*
Ga0126305_103099143	3300010036	Serpentine Soil	QMYQKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKDRRR*
Ga0126305_104560342	3300010036	Serpentine Soil	ERAMSHWQMYQKPKYGQGSTVWVEGGAEQQPVKGQVLLYIGRRTYEVALSNQGVRVVQEQALSLRTKGERR*
Ga0126305_104781091	3300010036	Serpentine Soil	MYQKPKYVQDDAVWVDGGAEQPVKGQVLLYMGRRTYEVALSSQGVRV
Ga0126305_105690181	3300010036	Serpentine Soil	PKYVQDDAVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKG*
Ga0126304_100039991	3300010037	Serpentine Soil	MSPHWQMYQKPKYVQDDTVWVDRGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKG*
Ga0126304_101549842	3300010037	Serpentine Soil	MYKKPKYVRDDAVWVERGAEKPVKGQVLLYIGRRTYEVALRSQGVRVVQEQALSLRTKGERR*
Ga0126304_102717082	3300010037	Serpentine Soil	MSPHWQMYLIPKYVQDDAVWVDRGAERPVKGQVLLYIGHRTYEVALSSQGVRVIQEQALSLRTKDERR*
Ga0126304_103834602	3300010037	Serpentine Soil	MYRKPKYGQDDMVWVERGAVQPVKGQVLLYIGRRTYEVALSNQGVRVVQEQALSLRTKGESR*
Ga0126304_109043281	3300010037	Serpentine Soil	MSHWQMYQKPKYVQDDAVWVERGAEQPVKGQVLLYMGHRTYEVALSSQGVRVIQEQALSLRTKGERR*
Ga0126315_100203375	3300010038	Serpentine Soil	MYQKPKYVQDDAVWVERGAEQQPVKGQVLLYIGRRTYEVALSNQGVRVVQEQALSLRTKGESR*
Ga0126315_100531872	3300010038	Serpentine Soil	MYRGEMYQKPKYGQTDAVWVEQGTQQPLEGQVLLYLGSRTYKVAISAQGVRVVQEQAMSLRSRCQRG*
Ga0126315_102990552	3300010038	Serpentine Soil	MYQKPKYVQDDAVWVDGGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKG
Ga0126315_104402451	3300010038	Serpentine Soil	MYHKPKYGQTDAVWVEQRAQQPLEGQVLLYLGGATYKVAISAQGVRVIQEQAMSLRSRGQ
Ga0126315_107515752	3300010038	Serpentine Soil	AVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQALSLRTKGERR*
Ga0126315_108490861	3300010038	Serpentine Soil	MYLKPKYVQDDAVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQA
Ga0126315_108947462	3300010038	Serpentine Soil	MSHWQMYQKPKYIQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKGQRR*
Ga0126309_101996252	3300010039	Serpentine Soil	MYRGAMYRPPKYGQKDTVWAEWGAEQPLEGQVLCYLGGATYDVAISGPGVRVVQEQALSPRSKDERG*
Ga0126308_100502511	3300010040	Serpentine Soil	MSHWQMYQKPKYVQDEAVWVDRGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKGERR*
Ga0126308_101743002	3300010040	Serpentine Soil	MSHWQMYQKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKGERR*
Ga0126308_102344881	3300010040	Serpentine Soil	MSHWQMYQKPKYVQDDAVWVERGFEQPIKGQVLLYMGRRTYEVALWSQGVRVIQEQALSLRTKGQRR*
Ga0126308_103397561	3300010040	Serpentine Soil	MYQKPKYVQDDTVWVDQGAEQPVKGQVLLYMGHRTYEVALSSQGVRVVQEQALSLRTEGERR*
Ga0126308_103632831	3300010040	Serpentine Soil	MSPHWQMYLKPRYVQDDAVWVDRGAEQPVKGQVLLYIGHRTYEVALSSQGVRVIQEQALSLRTKDERR*
Ga0126308_104516511	3300010040	Serpentine Soil	QKPKYGQGSTVWVEGGAEQQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQALSLRTKGERR*
Ga0126308_104622592	3300010040	Serpentine Soil	MYQKPKYVQDDAVWVERGEEQPVKGQVLLYMGRRTYEVALRSQGVRVIQEQALSLRTKGQRR*
Ga0126308_105429251	3300010040	Serpentine Soil	MYLKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKGDGR*
Ga0126308_105943393	3300010040	Serpentine Soil	MVGMLGRIGGTMYRMEMYHKPKYGQTDAVWVEQRAQQPLEGQVLLYLGGATYKVAIIAQGVRVIQEQAMSPRSRGQRG*
Ga0126308_106945812	3300010040	Serpentine Soil	MSQGEMYRKPKYGQTDTVWVEQGEQQPLEGQVLLYLGRATYKVAISAQGVRVVQEQAMSLRSRGQRG*
Ga0126308_108020301	3300010040	Serpentine Soil	KPKYVQDDAVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKG*
Ga0126308_110015792	3300010040	Serpentine Soil	MYQKPKYVQDDAVWVERGFEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKD
Ga0126308_110406911	3300010040	Serpentine Soil	MYLKPKYVQDDAVWVEQGEELPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKGQRR*
Ga0126308_111117821	3300010040	Serpentine Soil	TVWVERGVEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQALSLRTKGQRR*
Ga0126312_105297872	3300010041	Serpentine Soil	MYLKPKYVQNDAVWVERGAEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQALSLRTKGERR*
Ga0126312_105983181	3300010041	Serpentine Soil	MYLKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKD
Ga0126314_102364162	3300010042	Serpentine Soil	VGDRKGIMSHWQMYQKPKYVQDDAVWVDGGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKGERR*
Ga0126314_102845172	3300010042	Serpentine Soil	MVAERVWVIGEPMSQGEMYHKPKYGQTDTVWVEQGAEQPLEGQVLLYLGSRTYKVAIIAQGVRVVQEQAMSLRSRGQRG*
Ga0126314_103863061	3300010042	Serpentine Soil	MSHWQMYQKPKYVQDDTVWVARGAEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQALSLRTKGQRR*
Ga0126314_111620471	3300010042	Serpentine Soil	MVGMLGRIGGTMYRMEMYHKPKYGQTDAVWVEQRAQQPLEGQVLLYLGGATYKVAISAQGVRVIQEQAMSLRSRGQRG*
Ga0126310_100544162	3300010044	Serpentine Soil	MYRGAMYRKPKYGQNDIVWAKRGAEQPLEGQVLCYLGGGTYEVVISGPGVRVVQEQSLSPRSKGERG*
Ga0126310_100946193	3300010044	Serpentine Soil	MYHKPKYGQTDAVWVEQRAQQPLEGQVLLYLGGATYKVAIIAQGVRVIQEQAMSPRSRGQRG*
Ga0126310_102116711	3300010044	Serpentine Soil	MSHWEMYQRPKYVQDDTVWVERGVEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQAMSLRTKGERR*
Ga0126310_106860371	3300010044	Serpentine Soil	MSHWQMYQKPKYGQDDAVWVKRGAEQQPVKGQVLLYIGRRTYEVALSNQGVRVVQEQSLSLRTKGERH*
Ga0126310_107077312	3300010044	Serpentine Soil	MYHKPKYGQTDTVWVEQGAQQPLEGQVLLYLGGATYKVAIIAQGVRVVKEQAMSLRSKGERG*
Ga0126310_115877441	3300010044	Serpentine Soil	MYQKPKYVQDDTVWVERGAEQPVKGQVLLYMGRRTYEVALRSQRVRVVQEQALSLRTKDERR*
Ga0126311_109761831	3300010045	Serpentine Soil	KYVQDDEVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKGERR*
Ga0126311_113731511	3300010045	Serpentine Soil	MSRGEMYHRPKYGQNDPVWIERGAEQPLEGQVLRYIGGRTYEVALRGQGVRVIQEQALSLRTKGERR*
Ga0126311_114170901	3300010045	Serpentine Soil	MYKKPKYVQDDTVWVERGVEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQAMSLRTKGERR*
Ga0126306_102283003	3300010166	Serpentine Soil	MSHWQMYQKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKGQRR*
Ga0150984_1101930641	3300012469	Avena Fatua Rhizosphere	DDTYVQDDTVWVDRGAEQPLKGQVLLYIGRRTYEVALRSQGVRVVQEQAMSLRTKG*
Ga0162653_1000569101	3300012937	Soil	MSHWQMYQKPKYVQDDTVWVDRGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKG*
Ga0162650_1000311081	3300012939	Soil	MSHWQMYQRPKYAQDDTVWVERGVEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQALSLRTKGERR*
Ga0162652_1000067581	3300012941	Soil	MSPHWQMYQQLKYVQDDTVWVDRGAAQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKG*
Ga0182000_100608252	3300014487	Soil	MSHWQMYLKPKYVQDDAVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKGERR*
Ga0182000_101248341	3300014487	Soil	MYLKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSRQGVRVIQEQALSLRTKGKRR*
Ga0182001_102624962	3300014488	Soil	MSHWQMYQKPKYVQDDAVWVERGEEQPVKGQVLLYMGRRTYEVALSCQGVRVIQEQALSLRTKDQRR*
Ga0190275_102559244	3300018432	Soil	MSPHWQMYLKPKYVQDDAVWVDRGAEQPVKGQVLLYIGHRTYEVALSSQGVRVIQEQALSLRTKDERR
Ga0190275_107434811	3300018432	Soil	MPHLQMYQKPKYVQDDTVWVDQGAEQPVKGQVLLYIGRRTYEVALSRQGVRVVQEQALSLRTKGERR
Ga0190269_100727843	3300018465	Soil	MSHWQMYQRPKYVQDDTVWVERGVEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQAMSLRTKGERR
Ga0190268_100327431	3300018466	Soil	MSHWQMYQRPKYGQGSTVWVEGGAEQQPVKGQVLLYIGRRTYEVALSNQGVRVVQEQALSLRTKGESR
Ga0190268_102417662	3300018466	Soil	MSPHWQMYQKPKYVQDDTVWVDRGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKG
Ga0190268_107086452	3300018466	Soil	MSPHWQMYLKPKYVQGDTVRVDRGAEQPVKGQVLLYIGHRTYEVALSSQGVRVIQEQALSLRTND
Ga0190270_100749032	3300018469	Soil	MSPHWQMYQKPKYVQDDTVWVDRGAEQPVKGQVLLYMGRRTYEVALSNQGVRVVQEQALSLRTKG
Ga0190274_109058231	3300018476	Soil	MSPHWRMYQKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSSQGVRVVQEQALSLRTKGQRH
Ga0190274_110628501	3300018476	Soil	MSHWQMYQKPKYGQDDMVWVERGAEQPVKGQVLLYIGRRTYEVALSNQGVRVVQERALSLRTKGESR
Ga0193608_10568211	3300018875	Soil	TGVPMYRAMYRKPKYGQNDTVWAERGAEQTFEGQVLRYLGGAKYEVAISGQGVRVVQEQALSPRSKGQRG
Ga0193616_11818742	3300018918	Soil	MYRGAMYRKPKYGQNDTVWAERGAEQTFEGQVLRYLGGAKYEVAISGQGVRVVQEQALSPRSKGQRG
Ga0190267_102707972	3300019767	Soil	MSHWQMYLKPKYVQDDAVWVDRGAEQPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKGKRR
Ga0209461_101705401	3300027750	Agave	MSHWQMYLKPKYVQDDAVWVDRGAQEPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKGERR
Ga0272482_101949711	3300028578	Soil	MSHWQMYQKPKYVQDDPVWVERGEEQPVKGQVLLYMGRRTYEVALSNQGVRVIQEQALSLRTKGQRH
Ga0307318_100108131	3300028744	Soil	MSHWQMYQMPKYVQDDTVWVERGVEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQAMSLRTKGERR
Ga0268243_10676981	3300030510	Soil	MSHWQMYLKPKYVQDDAVWVERGAEQPVKGQVLLYMGRRTYEVALSRQGVRVVQEQALSLRTKGERR
Ga0268243_11209771	3300030510	Soil	MSHWQMYLKPKYVQDDAVWVDRGAQEPVKGQVLLYMGRRTYEVALSRQGVRVIQEQALSLRTKGKRR
Ga0268241_100264722	3300030511	Soil	MFGGQQEGAMSHLQMYHKPKYGQDDMVWVKQGAEQPVKGQVLLYIGRRTYEVALSSEGVRVVQEQALSLRTKG
Ga0307408_1003856452	3300031548	Rhizosphere	MSPHWQMYLKPKYVQDDAVWVDRGAERPVKGQVLLYIGHRTYEVALSSQGVRVIQEQALSLRTKDERR
Ga0307413_119812781	3300031824	Rhizosphere	MSPHWRMYQKPKYVQDDAVWVERGFEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALS
Ga0307409_1006563662	3300031995	Rhizosphere	MSHLPMYQKPKYVQDDTVWVDQGAEQPVKGQVLLYMGHRTYEVALSSQGVRVVQEQALSLRTEGERR
Ga0307409_1023082161	3300031995	Rhizosphere	VIMSHWLMYKKPKYVRDDAVWVERGAEKPVKGQVLLYIGRRTYEVALRSQGVRVVQEQALSLRTKGERR
Ga0307416_1021761361	3300032002	Rhizosphere	DTVWAEWGAEQPLEGQVLCYLGGATYDVAISGPGVRVVQEQALSPRSKDERG
Ga0307414_108901981	3300032004	Rhizosphere	MSHWQMYLKPKYVQDDAVWVDRGAEQPVKGQVLLYIGRRTYEVALRSQGVRVVQEQALSLRTKGQRR
Ga0307411_119290501	3300032005	Rhizosphere	MSHWQMYQKPKYVQDDAVWVERGFEQPVKGQVLLYMGRRTYEVALSSQGVRVIQEQALSLRTKDQRR
Ga0268251_100210613	3300032159	Agave	MSHLQMYQKPKYVQDDTVWVDQGAEQPVKGQVLLYMGRRTYEVALRSQGVRVVQEQAISLRTKGERR

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078299

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences