Metagenome Family F078351

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences

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Overview

Basic Information
Family ID	F078351
Family Type	Metagenome
Number of Sequences	116
Average Sequence Length	69 residues
Representative Sequence	MTYGYIEDLNFAVEVFDEGGNLKEVLARLHDLDAARAAYAACRAKYPAKIIYLCQGGRTLQRSDRD
Number of Associated Samples	54
Number of Associated Scaffolds	115

Quality Assessment
Transcriptomic Evidence	No
Most common taxonomic group	Unclassified
% of genes with valid RBS motifs	80.53 %
% of genes near scaffold ends (potentially truncated)	32.76 %
% of genes from short scaffolds (< 2000 bps)	81.03 %
Associated GOLD sequencing projects	51
AlphaFold2 3D model prediction	Yes
3D model pTM-score	0.35

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.

Hidden Markov Model


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Most Common Taxonomy
Group	Unclassified (62.931 % of family members)
NCBI Taxonomy ID	N/A
Taxonomy	N/A

Most Common Ecosystem
GOLD Ecosystem	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil (35.345 % of family members)
Environment Ontology (ENVO)	Unclassified (59.483 % of family members)
Earth Microbiome Project Ontology (EMPO)	Free-living → Non-saline → Soil (non-saline) (62.931 % of family members)

Multiple Sequence Alignments

Full Alignment
Alignment of all the sequences in the family.

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Seed Alignment
Alignment of a non-redundant set of sequences, used to build the family's HMM profile.

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AlphaFold2 Input Alignment
Refined alignment used as input for AlphaFold2.

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification:	Globular	Signal Peptide:	No	Secondary Structure distribution:	α-helix: 43.62% β-sheet: 0.00% Coil/Unstructured: 56.38%
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Predicted 3D Structure

Structure Viewer


Per-residue confidence (pLDDT): 0-50 51-70 71-90 91-100	pTM-score: 0.35
Secondary Structure: α-helix β-sheet Coil Turn	pTM-score: 0.35
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Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

Gene Neighborhood

Neighboring Pfam domains

Pfam ID	Name	% Frequency in 115 Family Scaffolds
PF01381	HTH_3	3.48
PF01068	DNA_ligase_A_M	3.48
PF03401	TctC	2.61
PF03703	bPH_2	1.74
PF13192	Thioredoxin_3	1.74
PF13727	CoA_binding_3	0.87
PF05532	CsbD	0.87
PF04392	ABC_sub_bind	0.87
PF00581	Rhodanese	0.87
PF14022	DUF4238	0.87
PF03480	DctP	0.87
PF07238	PilZ	0.87
PF02586	SRAP	0.87
PF00589	Phage_integrase	0.87
PF06035	Peptidase_C93	0.87
PF13414	TPR_11	0.87
PF01594	AI-2E_transport	0.87
PF00326	Peptidase_S9	0.87
PF00126	HTH_1	0.87
PF06114	Peptidase_M78	0.87

COG ID	Name	Functional Category	% Frequency in 115 Family Scaffolds
COG1423	ATP-dependent RNA circularization protein, DNA/RNA ligase (PAB1020) family	Replication, recombination and repair [L]	3.48
COG1793	ATP-dependent DNA ligase	Replication, recombination and repair [L]	3.48
COG3181	Tripartite-type tricarboxylate transporter, extracytoplasmic receptor component TctC	Energy production and conversion [C]	2.61
COG3402	Uncharacterized membrane protein YdbS, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	1.74
COG3428	Uncharacterized membrane protein YdbT, contains bPH2 (bacterial pleckstrin homology) domain	Function unknown [S]	1.74
COG0628	Predicted PurR-regulated permease PerM	General function prediction only [R]	0.87
COG2135	ssDNA abasic site-binding protein YedK/HMCES, SRAP family	Replication, recombination and repair [L]	0.87
COG2984	ABC-type uncharacterized transport system, periplasmic component	General function prediction only [R]	0.87
COG3237	Uncharacterized conserved protein YjbJ, UPF0337 family	Function unknown [S]	0.87
COG3672	Predicted transglutaminase-like protein	Posttranslational modification, protein turnover, chaperones [O]	0.87

NCBI Taxonomy

Select NCBI taxonomy Level:

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
All Organisms	root	All Organisms	37.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
cellular organisms	root	All Organisms → cellular organisms	37.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
Bacteria	superkingdom	All Organisms → cellular organisms → Bacteria	37.07 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
Proteobacteria	phylum	All Organisms → cellular organisms → Bacteria → Proteobacteria	31.90 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
Alphaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	25.00 %
unclassified Proteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria	0.86 %
Gammaproteobacteria	class	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
Hyphomicrobiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	13.79 %
unclassified Alphaproteobacteria	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria	2.59 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %
Rhodobacterales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales	0.86 %
Chromatiales	order	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
Bradyrhizobiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	6.90 %
Methylobacteriaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae	2.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.59 %
Chelatococcaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae	0.86 %
Rhodobacteraceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae	0.86 %
Chromatiaceae	family	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
Bradyrhizobium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	5.17 %
Methylobacterium	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium	2.59 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.59 %
Pseudodonghicola	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudodonghicola	0.86 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.86 %
Chelatococcus	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.59 %
unclassified Methylobacterium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium	1.72 %
unclassified Bradyrhizobium	no rank	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium	0.86 %
Chelatococcus daeguensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus daeguensis	0.86 %
Pseudodonghicola xiamenensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudodonghicola → Pseudodonghicola xiamenensis	0.86 %
Methylobacterium mesophilicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	0.86 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %

Name	Rank	Taxonomy	Distribution
Unclassified	root	N/A	62.93 %
Alphaproteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2.59 %
Methylobacterium sp. B1	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. B1	1.72 %
Bradyrhizobium sp. 150	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	0.86 %
Chelatococcus daeguensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus daeguensis	0.86 %
Pseudodonghicola xiamenensis	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudodonghicola → Pseudodonghicola xiamenensis	0.86 %
Methylobacterium mesophilicum	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	0.86 %
Thiocapsa	genus	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	0.86 %
Proteobacteria bacterium	species	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	0.86 %

Visualization

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Associated Scaffolds

Scaffold	Taxonomy	Length	IMG/M Link
2032320005\|FACEOR_FY84VJD01DGICS	Not Available	505	Open in IMG/M
3300002568\|C688J35102_119975565	Not Available	833	Open in IMG/M
3300005332\|Ga0066388_100008927	Not Available	7581	Open in IMG/M
3300005332\|Ga0066388_100029868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5084	Open in IMG/M
3300005332\|Ga0066388_100029868	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	5084	Open in IMG/M
3300005332\|Ga0066388_100068143	All Organisms → cellular organisms → Bacteria → Proteobacteria	3842	Open in IMG/M
3300005332\|Ga0066388_100834270	All Organisms → cellular organisms → Bacteria	1509	Open in IMG/M
3300005332\|Ga0066388_101022295	All Organisms → cellular organisms → Bacteria → Proteobacteria → Gammaproteobacteria → Chromatiales → Chromatiaceae → Thiocapsa	1388	Open in IMG/M
3300005332\|Ga0066388_101117686	Not Available	1336	Open in IMG/M
3300005332\|Ga0066388_103676864	Not Available	783	Open in IMG/M
3300005332\|Ga0066388_104192568	Not Available	735	Open in IMG/M
3300005332\|Ga0066388_105352748	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. B1	651	Open in IMG/M
3300005332\|Ga0066388_106668210	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	582	Open in IMG/M
3300005332\|Ga0066388_106781814	Not Available	577	Open in IMG/M
3300005332\|Ga0066388_106938178	Not Available	570	Open in IMG/M
3300005332\|Ga0066388_107275981	Not Available	556	Open in IMG/M
3300005332\|Ga0066388_108685376	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → unclassified Methylobacterium → Methylobacterium sp. B1	505	Open in IMG/M
3300005439\|Ga0070711_100850161	Not Available	776	Open in IMG/M
3300005713\|Ga0066905_101416490	Not Available	630	Open in IMG/M
3300005764\|Ga0066903_101359360	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1331	Open in IMG/M
3300005764\|Ga0066903_102635039	All Organisms → cellular organisms → Bacteria → Proteobacteria	975	Open in IMG/M
3300005764\|Ga0066903_103698984	Not Available	823	Open in IMG/M
3300005764\|Ga0066903_106691934	Not Available	599	Open in IMG/M
3300005764\|Ga0066903_107041290	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	583	Open in IMG/M
3300005764\|Ga0066903_107805471	Not Available	550	Open in IMG/M
3300005764\|Ga0066903_109121898	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Methylobacteriaceae → Methylobacterium → Methylobacterium mesophilicum	501	Open in IMG/M
3300005937\|Ga0081455_10234124	Not Available	1353	Open in IMG/M
3300005937\|Ga0081455_10434758	Not Available	901	Open in IMG/M
3300006845\|Ga0075421_100874329	Not Available	1028	Open in IMG/M
3300006845\|Ga0075421_101752262	Not Available	670	Open in IMG/M
3300006852\|Ga0075433_11201720	Not Available	658	Open in IMG/M
3300006854\|Ga0075425_101600293	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	734	Open in IMG/M
3300006871\|Ga0075434_101783875	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Rhodobacterales → Rhodobacteraceae → Pseudodonghicola → Pseudodonghicola xiamenensis	622	Open in IMG/M
3300006904\|Ga0075424_100100684	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3046	Open in IMG/M
3300006904\|Ga0075424_100521351	Not Available	1269	Open in IMG/M
3300007788\|Ga0099795_10009592	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	2816	Open in IMG/M
3300007788\|Ga0099795_10024354	Not Available	2018	Open in IMG/M
3300009012\|Ga0066710_102176177	Not Available	811	Open in IMG/M
3300009177\|Ga0105248_12271207	Not Available	618	Open in IMG/M
3300009792\|Ga0126374_10151842	Not Available	1404	Open in IMG/M
3300009792\|Ga0126374_11449665	Not Available	561	Open in IMG/M
3300009792\|Ga0126374_11800729	Not Available	512	Open in IMG/M
3300010043\|Ga0126380_10056854	Not Available	2145	Open in IMG/M
3300010046\|Ga0126384_10673567	All Organisms → cellular organisms → Bacteria → Proteobacteria	914	Open in IMG/M
3300010046\|Ga0126384_11059062	Not Available	741	Open in IMG/M
3300010046\|Ga0126384_12032999	Not Available	550	Open in IMG/M
3300010046\|Ga0126384_12273517	Not Available	523	Open in IMG/M
3300010047\|Ga0126382_10747766	Not Available	827	Open in IMG/M
3300010047\|Ga0126382_10775326	Not Available	814	Open in IMG/M
3300010358\|Ga0126370_10105967	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Chelatococcaceae → Chelatococcus → Chelatococcus daeguensis	1956	Open in IMG/M
3300010358\|Ga0126370_11083055	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	737	Open in IMG/M
3300010359\|Ga0126376_10434542	Not Available	1194	Open in IMG/M
3300010359\|Ga0126376_10647954	Not Available	1007	Open in IMG/M
3300010359\|Ga0126376_10793263	All Organisms → cellular organisms → Bacteria	924	Open in IMG/M
3300010359\|Ga0126376_12892294	Not Available	530	Open in IMG/M
3300010360\|Ga0126372_10186330	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	1710	Open in IMG/M
3300010360\|Ga0126372_10210660	Not Available	1628	Open in IMG/M
3300010360\|Ga0126372_11318019	Not Available	751	Open in IMG/M
3300010360\|Ga0126372_13051704	Not Available	520	Open in IMG/M
3300010362\|Ga0126377_10051473	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	3592	Open in IMG/M
3300010362\|Ga0126377_10139934	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	2262	Open in IMG/M
3300010362\|Ga0126377_10471431	All Organisms → cellular organisms → Bacteria	1282	Open in IMG/M
3300010362\|Ga0126377_10579335	Not Available	1164	Open in IMG/M
3300010362\|Ga0126377_10818385	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	991	Open in IMG/M
3300010362\|Ga0126377_10938087	Not Available	930	Open in IMG/M
3300010362\|Ga0126377_11205532	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	828	Open in IMG/M
3300010362\|Ga0126377_13181021	Not Available	530	Open in IMG/M
3300010397\|Ga0134124_11874751	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	635	Open in IMG/M
3300010398\|Ga0126383_10406292	Not Available	1400	Open in IMG/M
3300010401\|Ga0134121_11685340	Not Available	657	Open in IMG/M
3300012685\|Ga0137397_10006428	All Organisms → cellular organisms → Bacteria	8138	Open in IMG/M
3300012685\|Ga0137397_10034714	All Organisms → cellular organisms → Bacteria → Proteobacteria → unclassified Proteobacteria → Proteobacteria bacterium	3600	Open in IMG/M
3300012923\|Ga0137359_11480595	Not Available	567	Open in IMG/M
3300012929\|Ga0137404_10207084	Not Available	1664	Open in IMG/M
3300012930\|Ga0137407_10068219	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium → unclassified Bradyrhizobium → Bradyrhizobium sp. 150	2952	Open in IMG/M
3300012930\|Ga0137407_10223762	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae	1697	Open in IMG/M
3300012930\|Ga0137407_11340034	Not Available	680	Open in IMG/M
3300012930\|Ga0137407_11772671	Not Available	588	Open in IMG/M
3300012944\|Ga0137410_11485029	Not Available	591	Open in IMG/M
3300012948\|Ga0126375_10014606	All Organisms → cellular organisms → Bacteria	3470	Open in IMG/M
3300012948\|Ga0126375_10017841	Not Available	3228	Open in IMG/M
3300012948\|Ga0126375_10140555	All Organisms → cellular organisms → Bacteria → Proteobacteria	1506	Open in IMG/M
3300012948\|Ga0126375_10197295	Not Available	1318	Open in IMG/M
3300012948\|Ga0126375_10407418	Not Available	985	Open in IMG/M
3300012948\|Ga0126375_10748973	Not Available	767	Open in IMG/M
3300012948\|Ga0126375_11754901	Not Available	540	Open in IMG/M
3300012971\|Ga0126369_10661734	Not Available	1119	Open in IMG/M
3300012971\|Ga0126369_12405132	Not Available	613	Open in IMG/M
3300012971\|Ga0126369_12476079	Not Available	604	Open in IMG/M
3300012971\|Ga0126369_12836323	Not Available	567	Open in IMG/M
3300012987\|Ga0164307_11288276	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	610	Open in IMG/M
3300012989\|Ga0164305_12053148	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Bradyrhizobiaceae → Bradyrhizobium	523	Open in IMG/M
3300015371\|Ga0132258_10843743	All Organisms → cellular organisms → Bacteria → Proteobacteria	2311	Open in IMG/M
3300018028\|Ga0184608_10173589	Not Available	937	Open in IMG/M
3300018051\|Ga0184620_10302347	Not Available	540	Open in IMG/M
3300018052\|Ga0184638_1294874	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	549	Open in IMG/M
3300018072\|Ga0184635_10247596	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	706	Open in IMG/M
3300019789\|Ga0137408_1007517	All Organisms → cellular organisms → Bacteria → Proteobacteria	1849	Open in IMG/M
3300021073\|Ga0210378_10246753	Not Available	676	Open in IMG/M
3300025941\|Ga0207711_11731959	Not Available	568	Open in IMG/M
3300026555\|Ga0179593_1188339	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	2661	Open in IMG/M
3300027903\|Ga0209488_10000332	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	38357	Open in IMG/M
3300027907\|Ga0207428_10846844	Not Available	648	Open in IMG/M
3300027909\|Ga0209382_11991491	Not Available	557	Open in IMG/M
3300031152\|Ga0307501_10022245	Not Available	1217	Open in IMG/M
3300031152\|Ga0307501_10192898	Not Available	578	Open in IMG/M
3300031184\|Ga0307499_10347778	All Organisms → cellular organisms → Bacteria	501	Open in IMG/M
3300031198\|Ga0307500_10128000	Not Available	707	Open in IMG/M
3300031720\|Ga0307469_10322834	Not Available	1283	Open in IMG/M
3300031720\|Ga0307469_12432507	Not Available	511	Open in IMG/M
3300031740\|Ga0307468_100060024	All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria	2047	Open in IMG/M
3300031740\|Ga0307468_100540923	Not Available	935	Open in IMG/M
3300031740\|Ga0307468_102475665	Not Available	508	Open in IMG/M

Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:

Habitat	Taxonomy	Distribution
Environmental	Environmental	87.93%
Host-Associated	Host-Associated	12.07%

Habitat	Taxonomy	Distribution
Terrestrial	Environmental → Terrestrial	83.62%
Plants	Host-Associated → Plants	12.07%
Aquatic	Environmental → Aquatic	4.31%

Habitat	Taxonomy	Distribution
Soil	Environmental → Terrestrial → Soil	83.62%
Rhizosphere	Host-Associated → Plants → Rhizosphere	9.48%
Sediment	Environmental → Aquatic → Sediment	3.45%
Rhizoplane	Host-Associated → Plants → Rhizoplane	2.59%
Freshwater	Environmental → Aquatic → Freshwater	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified	62.07%
Loam	Environmental → Terrestrial → Soil → Loam	21.55%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified	9.48%
Unclassified	Environmental → Aquatic → Sediment → Unclassified	3.45%
Epiphytes	Host-Associated → Plants → Rhizoplane → Epiphytes	1.72%
Sediment	Environmental → Aquatic → Freshwater → Sediment	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Unclassified	Environmental → Terrestrial → Soil → Unclassified → Unclassified	56.90%
Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil	19.83%
Unclassified	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified	9.48%
Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil	4.31%
Unclassified	Environmental → Aquatic → Sediment → Unclassified → Unclassified	3.45%
Unclassified	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified	1.72%
Unclassified	Environmental → Aquatic → Freshwater → Sediment → Unclassified	0.86%
Grasslands	Environmental → Terrestrial → Soil → Unclassified → Grasslands	0.86%
Grasslands	Environmental → Terrestrial → Soil → Loam → Grasslands	0.86%
Agricultural Soil	Environmental → Terrestrial → Soil → Loam → Agricultural Soil	0.86%
Unclassified	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified	0.86%

Habitat	Taxonomy	Distribution
Tropical Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil	35.34%
Tropical Forest Soil	Environmental → Terrestrial → Soil → Loam → Forest Soil → Tropical Forest Soil	19.83%
Vadose Zone Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil	12.07%
Populus Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere	7.76%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	6.03%
Hardwood Forest Soil	Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil	4.31%
Groundwater Sediment	Environmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment	3.45%
Terrestrial Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Terrestrial Soil	2.59%
Tabebuia Heterophylla Rhizosphere	Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Tabebuia Heterophylla Rhizosphere	1.72%
Switchgrass Rhizosphere	Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere	1.72%
Groundwater Sediment	Environmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment	0.86%
Soil	Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil	0.86%
Grasslands Soil	Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil	0.86%
Soil	Environmental → Terrestrial → Soil → Loam → Grasslands → Soil	0.86%
Corn, Switchgrass And Miscanthus Rhizosphere	Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere	0.86%
Arabidopsis Rhizosphere	Host-Associated → Plants → Rhizoplane → Unclassified → Unclassified → Arabidopsis Rhizosphere	0.86%

Visualization

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Associated Samples

Taxon OID	Sample Name	Habitat Type	IMG/M Link
2032320005	Soil microbial communities from sample at FACE Site 5 Oak Ridge CO2-	Environmental	Open in IMG/M
3300002568	Grasslands soil microbial communities from Hopland, California, USA - 2	Environmental	Open in IMG/M
3300005332	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 6 (Hybrid Assembly)	Environmental	Open in IMG/M
3300005439	Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG	Environmental	Open in IMG/M
3300005713	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil Plot 36 (version 2)	Environmental	Open in IMG/M
3300005764	Tropical forest soil microbial communities from Panama analyzed to predict greenhouse gas emissions - Panama Soil - Plot 1 (version 2)	Environmental	Open in IMG/M
3300005937	Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1	Host-Associated	Open in IMG/M
3300006845	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5	Host-Associated	Open in IMG/M
3300006852	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2	Host-Associated	Open in IMG/M
3300006854	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD4	Host-Associated	Open in IMG/M
3300006871	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3	Host-Associated	Open in IMG/M
3300006904	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3	Host-Associated	Open in IMG/M
3300007788	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_2	Environmental	Open in IMG/M
3300009012	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_159	Environmental	Open in IMG/M
3300009177	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG	Host-Associated	Open in IMG/M
3300009792	Tropical forest soil microbial communities from Panama - MetaG Plot_12	Environmental	Open in IMG/M
3300010043	Tropical forest soil microbial communities from Panama - MetaG Plot_26	Environmental	Open in IMG/M
3300010046	Tropical forest soil microbial communities from Panama - MetaG Plot_36	Environmental	Open in IMG/M
3300010047	Tropical forest soil microbial communities from Panama - MetaG Plot_30	Environmental	Open in IMG/M
3300010358	Tropical forest soil microbial communities from Panama - MetaG Plot_3	Environmental	Open in IMG/M
3300010359	Tropical forest soil microbial communities from Panama - MetaG Plot_15	Environmental	Open in IMG/M
3300010360	Tropical forest soil microbial communities from Panama - MetaG Plot_6	Environmental	Open in IMG/M
3300010362	Tropical forest soil microbial communities from Panama - MetaG Plot_22	Environmental	Open in IMG/M
3300010397	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-4	Environmental	Open in IMG/M
3300010398	Tropical forest soil microbial communities from Panama - MetaG Plot_35	Environmental	Open in IMG/M
3300010400	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-2	Environmental	Open in IMG/M
3300010401	Terrestrial soil microbial communities without Nitrogen fertilizer from Kellogg Biological Station, Michigan, USA - KB3-0-1	Environmental	Open in IMG/M
3300012685	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czorhiz1.16 metaG	Environmental	Open in IMG/M
3300012923	Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - Mad1_40_16 metaG	Environmental	Open in IMG/M
3300012929	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012930	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012944	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Illumina Assembly)	Environmental	Open in IMG/M
3300012948	Tropical forest soil microbial communities from Panama - MetaG Plot_14	Environmental	Open in IMG/M
3300012971	Tropical forest soil microbial communities from Panama - MetaG Plot_1	Environmental	Open in IMG/M
3300012987	Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MG	Environmental	Open in IMG/M
3300012989	Soil microbial communities amended with pyrogenic organic matter from upstate New York, USA - Whitman soil sample_237_MG	Environmental	Open in IMG/M
3300015371	Combined assembly of cpr5 and col0 rhizosphere and soil	Host-Associated	Open in IMG/M
3300018028	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_30_coex	Environmental	Open in IMG/M
3300018051	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_5_b1	Environmental	Open in IMG/M
3300018052	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_50_b2	Environmental	Open in IMG/M
3300018072	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2	Environmental	Open in IMG/M
3300019789	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_2_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300021073	Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redo	Environmental	Open in IMG/M
3300025941	Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes)	Host-Associated	Open in IMG/M
3300026555	Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug2_1_08_16fungal (PacBio error correction)	Environmental	Open in IMG/M
3300027903	Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Bulk_2 (SPAdes)	Environmental	Open in IMG/M
3300027907	Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes)	Host-Associated	Open in IMG/M
3300027909	Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD5 (SPAdes)	Host-Associated	Open in IMG/M
3300028824	Soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_DNA_197	Environmental	Open in IMG/M
3300031152	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 15_S	Environmental	Open in IMG/M
3300031184	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 13_S	Environmental	Open in IMG/M
3300031198	Soil microbial communities from Populus trichocarpa stands in riparian zone in the Pacific Northwest, United States - 14_S	Environmental	Open in IMG/M
3300031720	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515	Environmental	Open in IMG/M
3300031740	Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gases AM2C_05	Environmental	Open in IMG/M

Geographical Distribution

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Family Sequences

Protein ID	Sample Taxon ID	Habitat	Sequence
FACEORA_1057280	2032320005	Soil	EDLRFAVEVFNEGGNLKEILARLHDLDAARAGYVRAEPNTRKKLLYPSRGGRILRQSDRDDP
C688J35102_1199755652	3300002568	Soil	MTYGYIEDLNFAVEVFDEGGNLKEVLARLHDLDAARAAYKACRAKYPAKIIYLCQGGRILRRSDRDAATR*
Ga0066388_10000892711	3300005332	Tropical Forest Soil	MLYDRWIEQLNVAIEVFDERGNLLEVLARLHDLDAARAAYGACQRKYPAKLIMLCQGGRILRRSDREART*
Ga0066388_1000298681	3300005332	Tropical Forest Soil	LNSSTFSIEVFDERGNLLEVLARVHDLDAATAAYDACRRKYPAKLIMLCQGGRILRRSDREARA*
Ga0066388_1000298687	3300005332	Tropical Forest Soil	MTLYWIEELGFSVENFSESGNLLEVLARLHDLDAARAACEACRAKYPKRLLFFCQGGRTLRRSDRDVSEVRTL*
Ga0066388_1000681431	3300005332	Tropical Forest Soil	MTYGYIEDLKFVVEEFDEGGNLLEVFARVRDLDAARAAYDACRLKHPKRLLYLSQGGRILRRSDRDELAMRTL*
Ga0066388_1008342701	3300005332	Tropical Forest Soil	MLSNVHWIEDLTYSVENFSETGNLLEVLGRLHDLDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDRDVSEVRTL*
Ga0066388_1010222952	3300005332	Tropical Forest Soil	MTYGYIEDLNFAVEVFDEGGNLKEVLARLHDLDAARAAYAACRAKYPAKIIYLCQGGRTLQRSDRD*
Ga0066388_1011176863	3300005332	Tropical Forest Soil	MTYGRIEDLNFAVEVFDEGGNLKEVLARLHDLDAARAAYTACRAKYPAKIIYLCQG
Ga0066388_1036768641	3300005332	Tropical Forest Soil	MTYGYIEDLNFAVEVFDEGGNLKEVLARLHDLDAARAAYMACQIKYPAKLIMLCQGGRILRRSDRE*
Ga0066388_1041925683	3300005332	Tropical Forest Soil	MKAEHWIEDLGFSVEHFDEGGKLLEVLARLHDLDPARAAYVACRAKYPAKIIYLCQGG
Ga0066388_1053527481	3300005332	Tropical Forest Soil	MKTEHWIEDLGFSVEHLDEGGNLKEVLARLHDLDPAHAAYTACRAKYPAKIIYLCQGGRTLRRSDRDETFS*
Ga0066388_1066682101	3300005332	Tropical Forest Soil	MKTEYWIEQLGFSVEHFDERGDLLEVLGRLHDLDAARAAYSACRNQHPKKLLYLCQGGRILTRSDRDDSEVRKL*
Ga0066388_1067818141	3300005332	Tropical Forest Soil	MKTEYWIEQLGFSVEHFDERGDLPEVLGRLHDLDAARATYTACRTKYPAKIIYLCQGGRILRRSDRDDDRRNKQRESRE*
Ga0066388_1069381782	3300005332	Tropical Forest Soil	MKTEYWIEQLGFSVEHFDERGDLLEVLARLHDLDAARAAYTACRAKYPAKIIYLCQGGR
Ga0066388_1072759811	3300005332	Tropical Forest Soil	MTYGCIEDLKFAVEVFDEGGNLLEVLGRLHDLYAARAAYGACRLKYPTKLIYLCQGGRILRRS
Ga0066388_1086853761	3300005332	Tropical Forest Soil	MTHHWIEDLSYSVENFSESGNLLEVLARLHDLNAARAAYEACRAKYPKRLLYLCQGGRTLRRSDRDVSEVRAL*
Ga0070711_1008501612	3300005439	Corn, Switchgrass And Miscanthus Rhizosphere	MTYGYIEDLKFAVEVFNEGGNLKEILARLHDLDAARAGYDACRTKYPKKLLYPSQGGRILRQSDRDD
Ga0066905_1014164902	3300005713	Tropical Forest Soil	LRFSVENFDPKSGNRLEILARLHDFDAARAAYDACRIKYPKKLLYLSQGGRILRRSDRDDSEVRTL*
Ga0066903_1013593603	3300005764	Tropical Forest Soil	MTYGCIEDLNFAVEVFDEGGNLKEVLARLHDLDAARAAYRACRAKYPAKIIYLCQGGRILQRSDRDEVRTL*
Ga0066903_1026350392	3300005764	Tropical Forest Soil	MNQHWIEQLTFSVEVFDEGGNLLEVLARVHDLDAAHAAYEACRAKYPKRLLFLCQGGRTLRRSDREAEVRQL*
Ga0066903_1036989841	3300005764	Tropical Forest Soil	PMKTEYWIEQLGFSVEHFDERGDLLEVLGRLHDLDAARAAYTACREKYPAKLLYLCQGGRILRRSDRDN*
Ga0066903_1066919342	3300005764	Tropical Forest Soil	VSLSCKPIPLQVLARLHDLDAAYGARRLKCPAKLIMLCQGGRILRRSDRDDFEVRTL*
Ga0066903_1070412902	3300005764	Tropical Forest Soil	MTQYWIEQLQFSVEVFDERGELIEVLARLHDLDPARAAYGACRQKYPAKLIYLCQGGRILRRSDRDEP*
Ga0066903_1078054712	3300005764	Tropical Forest Soil	MTHHWIEDLGYSVENFSERGSLLEVVARLHDLDAARAAYDACRAKYPKRLLFLCHGGRTLRRSDRDDPNVHTLR*
Ga0066903_1091218981	3300005764	Tropical Forest Soil	MLYDRWIEQLNVAIEVFDERGNLLEVLARLHDLHAARAAYGACQRKYPAKLIMLCQGGRILRRSDREART*
Ga0081455_102341243	3300005937	Tabebuia Heterophylla Rhizosphere	MKAEPWIEDLRFSVENFDPKSGNRLEILARLHDLDAARAAYDACRIKYPKKLLYLSQGGRILRRSDRDGSEVRTL*
Ga0081455_104347582	3300005937	Tabebuia Heterophylla Rhizosphere	MKTKHWIEDLGFSVEHFDEGGNLKEVLARLHDLDAARVAYTACRAKYPAKIIYLCQGGRTLQWSDRDEMRPL*
Ga0075421_1008743293	3300006845	Populus Rhizosphere	MTYGYIEGLKFAVEMFDESGNLKEILARLHDLDAARAAYTACRAKYPAKIIYLCHGGRILRRSDHH*
Ga0075421_1017522621	3300006845	Populus Rhizosphere	MTYGYIENLTFAVEVFDEGGNLLEVLARLHDLDAARAAYSACRKKYPAKILYLCQGGRILRRSDADATCR*
Ga0075433_112017202	3300006852	Populus Rhizosphere	FAVEVFDEGGNLLEVLARLHDLDAARAAYSACRKKYPAKILYLCQGGRILRRSDADATCR
Ga0075425_1016002932	3300006854	Populus Rhizosphere	MTYGYTEDLKFAVEVFDKGGNLKEVLARLHDLDAARAAYTACRAKYPAKIIYLCQGGRTLQRSDRDSAT*
Ga0075434_1017838751	3300006871	Populus Rhizosphere	MTYGYIEDLKFAVEMFDESGNLKEILARLHDLDAARAAYTACRAKYPAKIIYLCHGGRILRRSDHH*
Ga0075424_1001006841	3300006904	Populus Rhizosphere	MTYGYIENLTFAVEVFDEGGNLLEVLARLHDLDAARAAYSACRKKYPAKILYLCQGGRILRRSDQDAEATCR*
Ga0075424_1005213512	3300006904	Populus Rhizosphere	MTYGYIEGLKFAVEMFDESGNLKQILARLHDLDAARAAYAACPAKYPAKIIYLCHGGRILRRSDHH*
Ga0099795_100095924	3300007788	Vadose Zone Soil	MTQYWIEQLSFAVEVFDEGSGNLIEVLARLHDLDPARAAYKECRRKYPAKLIMLCQGGRILGRSDRE*
Ga0099795_100243543	3300007788	Vadose Zone Soil	MTQYWIEQLSFSVEHFDETSGNLVEVLGRLHDLDAARAAYKECRRKYPAKVIYLCQGGRILRRSDRDNKSQDCSA*
Ga0066710_1021761773	3300009012	Grasslands Soil	MSQHWFEDLKFSVEVFDQGGNLTEVLGRLHDLDAARPAYAACCAKYPTKIIYLCQGGRTLQRNDRQ
Ga0105248_122712071	3300009177	Switchgrass Rhizosphere	MTYGYIEDLKFAVEVFDERGNLKEILARLYDLDAARAAYDVCRTKYPAKIIYLCQGGRTLRRSDRDPPG*
Ga0126374_101518421	3300009792	Tropical Forest Soil	MTHQRIEQLNFAVEVFDDGGNLIEVLARLHDLDAARAAYTACRAKYPAKKIMLCQGGMILRRSDRDDTSGAST
Ga0126374_114496651	3300009792	Tropical Forest Soil	EDLGFSVENFSESGNLLEVLARLHDLDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDREISEVRTL*
Ga0126374_118007291	3300009792	Tropical Forest Soil	MTYGCIEDLNFAVEVFDEGGNLKEVLARLHDLDAARAAYRACRAKYPAKIIYLCQGGRILRRSDRDGAEVRTL*
Ga0126380_100568541	3300010043	Tropical Forest Soil	MTYGCIEDLKFAVEVFDEGGNLLEVLGRLHDLYAARAAYGACRLKYPTKLIYLCQGGRILRRSDRDVSDVPTF*
Ga0126384_106735672	3300010046	Tropical Forest Soil	MTRHWIEDLGYSVENFSESGNLLEVLARLHDLDAARAAYEACRAKYPKRLLFLCQGGRILRRSDRDVAEVRAL*
Ga0126384_110590622	3300010046	Tropical Forest Soil	MTLYWIEELGFSVENFSESGNLLEVLARLHDLDAARAACEACRAKYPKRLLFLCQGGRTLRRSDRNAEVRTL*
Ga0126384_120329991	3300010046	Tropical Forest Soil	EVFDQGGNLREVLARLHDLAAARAAYAACREKYPAKLLYLCQGGRILHRSDRDVSEVPTF
Ga0126384_122735171	3300010046	Tropical Forest Soil	MLSNVNWIEDLKYSVENFSESGNLLEVLARLHDLDAARAAYEACRAKYPKRLLYLCQGGRTLHRSDRDVSEVRTL*
Ga0126382_107477662	3300010047	Tropical Forest Soil	MKTENWIEDLRFSVENFDPKSGNRLEMLARLHDLDAANAAYDACRIKYPKKLLYLSQGGRILRRSDRDDSKVRTL*
Ga0126382_107753261	3300010047	Tropical Forest Soil	MTHYWIEELGFSVENFTESGNLLEVLARLHDLDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDRDASEV
Ga0126382_120618751	3300010047	Tropical Forest Soil	RWRALPTTPKSGAPMTNYWIEDLGFSVENFSESGNLLEVLARLHDLDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDRDAEVHPL*
Ga0126370_101059672	3300010358	Tropical Forest Soil	MSNVHWIEDLRYSVENFSERGDLLEVLARLRDLDAAHAAYEACRAKYPKRLLFLCQGGRTLRRSDRNAEVRTL*
Ga0126370_110830552	3300010358	Tropical Forest Soil	MTQHWFEDLKFSVEVFDQGGNLLEVLARLHDLDAARAAYEACRNKYPKKLLYLSQGGRILRRSDQDDPEVRTL*
Ga0126376_104345421	3300010359	Tropical Forest Soil	HLARWRAPDHIPQSEAPMLSNVNWIEDLKYSVENFSESGNLLEVLARSHDLDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDREISEVRTL*
Ga0126376_106479542	3300010359	Tropical Forest Soil	MTYGYVEDLKFAVEEFDGSGNLLEVFARVRDLDAARAAYDACRLKHPKRLLYLCQGGRILQRSDRE*
Ga0126376_107932632	3300010359	Tropical Forest Soil	MTYGFIEDLRFAVEVCDEGGNLQEVLARLHDLDAARAAYTARCAKYPAKIIYLCQGGRTLRRSDRDDVVR*
Ga0126376_128922941	3300010359	Tropical Forest Soil	MLSNVHWIEDLTYSVENFSETGNLLEVLGRLHDLDAARAAYEACRAKYPKRLLYLSQGGRILRRSDRDVSEVRTL*
Ga0126372_101863306	3300010360	Tropical Forest Soil	AVEVFDEGGNLKEVLARLHDLDAARAAYRACRAKYPAKIIYLCQGGRILQRSDRDEVRTL
Ga0126372_102106601	3300010360	Tropical Forest Soil	LGRWRAPDHNHRSKAPTYQHWIEDLGYSIENFSENGNLLEVLARTDDLNAAHAAYEACRVKYPARLLFLSQGGRTLRRSDRDVSEVRTL*
Ga0126372_113180192	3300010360	Tropical Forest Soil	MSNVHWIEDLRYSVENFSERGDLLEVLARLRDLDAAHAAYEACRAKYPKRLLFLCQGGRTLRRSDRDAEVRTL*
Ga0126372_130517042	3300010360	Tropical Forest Soil	YSVENFSESGNLLEVLARLHDFDAARAAYEACRAKYPKRLLYLSQGGRILRRSDRDSS*
Ga0126377_100514735	3300010362	Tropical Forest Soil	MTHYWIEELGFSVENFTESGNLLEVLARLHDLDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDRDASEVRTL*
Ga0126377_101399342	3300010362	Tropical Forest Soil	MNQHWFEDLRFSVEVFDERGNLKKVLARLHDLDAARAAYTACRAKYPAKIIYLCQGGRTLRRSDRE*
Ga0126377_104714313	3300010362	Tropical Forest Soil	MTQHWFEDLKFSVEVFDEGGNLREVLARLHDLDAARAAYEACRNKYPKKLLYLSQGGRILRRSDRDDPEVRTL*
Ga0126377_105793353	3300010362	Tropical Forest Soil	MLHDHWIEQLNFSVEVFDDRGNLVEVLARVHDLDAARAAYETCRTKYPKKLLYLSQGGRILGR
Ga0126377_108183853	3300010362	Tropical Forest Soil	MLSNVHWIEDLKYSVENFSESGNLLEVLARLHDFDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDR
Ga0126377_109380872	3300010362	Tropical Forest Soil	MTHHWTEDLKFVIGVFDRSGHLLEELARLHDLDAATAAYAACRLKYPEKLILLSQGGRTLRRSDR*
Ga0126377_112055322	3300010362	Tropical Forest Soil	MTYGYIEDLKFAVEEFDQGGNLIEVLGRLHDLDAARAAYTACRITYPKKLLYLCQGGRTLRRSDRDEMRSL*
Ga0126377_131810211	3300010362	Tropical Forest Soil	MSNVHWIEDLGFSVENFSERGDLLEVLARLRDLDAAHAAYEACRAKYPKRLLFLCQGGRTLRRSDRDVSEVRTL*
Ga0134124_118747511	3300010397	Terrestrial Soil	MTYGYIEDLKFAVEVFDERGNLKEILARLHDLDAARAAYTACRAKYPAKIIYLCQGGRTLQRSDR*
Ga0126383_104062923	3300010398	Tropical Forest Soil	MSNVHWIEDLRYSVENFSERGDLLEVLARLRDLDAAHAAYEACRAKYPKRLLFLCQGGRTLRRSDSDAEVRTL*
Ga0134122_125064511	3300010400	Terrestrial Soil	LRILSDYIGGWRALPTTKKSGAPTTYGYIEDLKFAVEVFDDGGNLKEILARLYDLDAARAAYDVCRTKYPAKIIYLCQGGRTLRRSDRDPPG*
Ga0134121_116853401	3300010401	Terrestrial Soil	MTYGYIEDLKFAVEVFDEGGNLKEVLARLHDLDAARAAYDTCRAKYPAKIIYLCQGGRTLRRSDRDEDATHR*
Ga0137397_100064284	3300012685	Vadose Zone Soil	MTYGYIEDLKFAVEVFDEGGNLREVLARLHDLDAARAAYAACRAKYPAKIIYLCQGGRTLRRGDRD*
Ga0137397_100347146	3300012685	Vadose Zone Soil	MTYGCIEDLKFAVEVFDEGGNLKEVLARLHDFDSARAAYDACRAKYPKKLLYLSQRGRILRRSDRDDLVS*
Ga0137359_114805952	3300012923	Vadose Zone Soil	MTYGYIEDLKFAVEVFDDCGNLLEVLGRLHDLDAARAAYMACRAKYPAKLIYLCQGGRTLRRSNRDDDEVRAL*
Ga0137404_102070842	3300012929	Vadose Zone Soil	MTQYWIEQLTFAVEVFDEGSDNLLEELARLHDLDAARAAYAARRRKYPAKLIYLCQGGRTLRRSDRD*
Ga0137407_100682196	3300012930	Vadose Zone Soil	VFDEGGNLREVLARLHDLDAARAAYAACRLKYPAKLIYLCHGGRILQRSDRD*
Ga0137407_102237621	3300012930	Vadose Zone Soil	MTYGYIQDLNFAVEVFDEGGNLLEVLARLHDLDVARAAYAGCRQKYPAKLIHLCQGGRTLRRSDRD*
Ga0137407_113400342	3300012930	Vadose Zone Soil	AHDSILDRAAVEVFDDSSGNLIEVLGRLHDLDAARAAYAACRAKYPAKLIYLCQGGRILRRSDRPL*
Ga0137407_117726712	3300012930	Vadose Zone Soil	MTYGYIEDLKFAVEVFDDCGNLLEVLGRLHDLDAARAACTASCATYPAKLIYLCQGGRTLRR
Ga0137410_114850291	3300012944	Vadose Zone Soil	PITKKSGAPMTYGCIEDLKFAVEVFDEGGNLKEVLARLHDFDSARAAYDACRAKYPKKLLYLSQRGRILRRSDRDDLVS*
Ga0126375_100146065	3300012948	Tropical Forest Soil	RGWRALPTTKKSGAPMTYGYIEDLNFAVEVFDEGGNLKEVLARLHDLDAARAAYMACQIKYPAKLIMLCQGGRILRRSDRE*
Ga0126375_100178412	3300012948	Tropical Forest Soil	LNSSTFSIELFDERGNLLEVLARVHDLDAATAAYDACRRKYPAKLIMLCQGGRILRRSDREARA*
Ga0126375_101405554	3300012948	Tropical Forest Soil	MIGVFDTGGNLLEVLARLHDLDAATAAYAAYRLKYPEKLIMLCEGGRTLRRSDR*
Ga0126375_101972951	3300012948	Tropical Forest Soil	MNQHWIEDLGFSVENFSESGNLLEVLARLHDLDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDREISEVRTL*
Ga0126375_104074182	3300012948	Tropical Forest Soil	MTYGCIEDLNFAVEVFDEGGNLREVLARLHDLDPARAAYTACRAKYPAKIIYLCQGGRILRRSDRDETFS*
Ga0126375_107489733	3300012948	Tropical Forest Soil	MTYGYIEDLKFAVEVFDRGGNLIEVLARLRDLGAARAAYDAFRTKYPKKLLYLS
Ga0126375_117549011	3300012948	Tropical Forest Soil	SNVHWIEDLRFSVENFSERGDLLEVLARLHDLDAARAAYEACRAKYPKRLLFLCQGGRTLRRSDRDVSEVRTL*
Ga0126369_106617342	3300012971	Tropical Forest Soil	MPNVHWIEDLRYSVEHFSERGDLLEVLARLRDLDAAHAAYEACRAKYPKRLLFLCQGGRTLRRSDRDVSEVRTL*
Ga0126369_124051321	3300012971	Tropical Forest Soil	EDLGYSIENFSENGNLLEVLARTHDLNAAHAAYEACRVKYPARLLFLSQGGRTLRRSDRDVSEVRTL*
Ga0126369_124760791	3300012971	Tropical Forest Soil	MKTDHWLEDLKFSVELFDEGGNLLEVLTRLHDLDAACAAYTACREKYPTKLLYL
Ga0126369_128363232	3300012971	Tropical Forest Soil	MSNVNWIEDLRYSVENFSEKGNLLEVLARLRDLDAAHAAYEACRVKYPKRLLFLCQGGRTLRRSD
Ga0164307_112882761	3300012987	Soil	MTYGYIEDLKFSVEVFDEGGNLKEILARLHNLDAAHAAYTACRAQYPAKIIYLCQGRRTLRRSDRDPPTDP*
Ga0164305_120531481	3300012989	Soil	MKTEHWIEDLKFSIEHFDERGNLQEVLARLRDLDAARAAYMACRTKYPAKLLYLSQRGRILQRSDRDEMRPL*
Ga0132258_108437431	3300015371	Arabidopsis Rhizosphere	PGGAPMTYGYIENLTFAVEVFDEGGNLLEVLARLHDLDAARAAYSACRKKYPAKILYLCQGGRILRRSDADATCR*
Ga0184608_101735892	3300018028	Groundwater Sediment	LKFAVEVFDEGGDLLEVLDRLHDLDAARAGCTACRVKYPAKIIYLCQGERTLRRRDRD
Ga0184620_103023471	3300018051	Groundwater Sediment	LKFAVEVFDEGGDLLEVLDRLHDLDAARAGCTACRVKYPAKIIYLCQGERTLRR
Ga0184638_12948741	3300018052	Groundwater Sediment	VNQHWIEELRFSIESFDRESGNLLEILARLHDLDAARAAYEACRTKYPKRLLYLTQGGRIRRRSDRD
Ga0184635_102475962	3300018072	Groundwater Sediment	VNQHWIEELRFSIESFDRESGNLLEILARLHDLDAARAAYEACRTKYPKKLLYLSQGGRILRRSDRDDAEVQTLR
Ga0137408_10075175	3300019789	Vadose Zone Soil	MTQYWIEQLTFAVEVFDEGSDNLLEELARLHDLDAARAAYAARRRKYPAKLIYLCQGGRTLRRSDRD
Ga0210378_102467531	3300021073	Groundwater Sediment	MNQHWIEDLRFSVENFDSVSGNLLEILARLHDLDAARAAYEACQTKYPKKLLYLSQGGRILRRSDRDEPEVRTL
Ga0207711_117319591	3300025941	Switchgrass Rhizosphere	TQPRRSGAPMTYGYIEDLKFAVEVFDERGNLKEILARLYDLDAARAAYDVCRTKYPAKIIYLCQGGRTLRRSDRDPPG
Ga0179593_11883393	3300026555	Vadose Zone Soil	MTQYWIEQLSFSVEHFDETSGNLVEVLGRLHDLDAARAAYKECRRKYPAKVIYLCQGGRILRRSDRDNKSQDCSA
Ga0209488_1000033235	3300027903	Vadose Zone Soil	MTQYWIEQLSFAVEVFDEGSGNLIEVLARLHDLDPARAAYKECRRKYPAKLIMLCQGGRILGRSDRE
Ga0207428_108468442	3300027907	Populus Rhizosphere	AVEVFDEGGNLLEVLARLHDLDAARAAYSACRKKYPAKILYLCQGGRILRRSDADATCR
Ga0209382_119914912	3300027909	Populus Rhizosphere	MTYGYIEGLKFAVEMFDESGNLKEILARLHDLDAARAAYTACRAKYPAKIIYLCHGGRILRRSDHH
Ga0307310_102667352	3300028824	Soil	DYIGGWRALPTTKKSGAPMTYGYIEDLKFAVEVSDERGDMKEVLARLHDPDAARAAYTACRAKYPAKIIYLCQGGRILRRTDREGR
Ga0307501_100222452	3300031152	Soil	VTYGYTEDLKFAVEVFDEGGNLKEVLARLHDLDAARAAYTACRVKYPAKIIYLCQGGRILRRSDQDADANFR
Ga0307501_101928982	3300031152	Soil	MTQYWIEQLTFAVEVFDEGSGNLLEVLARLHDLDAARAAYGACRRKYPAKLIMLCQGGRILQRSDRD
Ga0307499_103477781	3300031184	Soil	MTYGYIEDLKFAVEMFDERGNLKEILAGLYDLYAARAAYDVCRAKYPAKIIYLCQGGRI
Ga0307500_101280002	3300031198	Soil	MTYGNIADLKFAVWVFDQGDNLLAVLGRLDDLDAGSAAYAACPQKYPTKLLMLCQDGRILRRSDQD
Ga0307469_103228342	3300031720	Hardwood Forest Soil	MTYGYIEDLKFAVQVFDEGGNLLEVLARLHDLDAARAAYDACRTKYPKKLLYLSQGGRILRRSDRDEMRPL
Ga0307469_124325071	3300031720	Hardwood Forest Soil	MTYGYIEDLNFAVEVFDEGGNLLEALGRLHDLDAATAAYAACRQKYPAKLIYLCQGGRTLRRSNRD
Ga0307468_1000600244	3300031740	Hardwood Forest Soil	MKTEHWIEDLGFSVEHFDEGGNLKEVLARLHDLDAARAAYTACRTKYPKKLLYLSQGGRILRRSDRDGSEVQKL
Ga0307468_1005409232	3300031740	Hardwood Forest Soil	MKTEHWIEELRFSVEHFDEGGNLKEVLARLHDLDAARAAYTACRAKYPAKIIYLCQGGRTLQRSDRDEMRPL
Ga0307468_1024756651	3300031740	Hardwood Forest Soil	MTYGYIEDLKFAVEVFDERGNLKEILARLHDLDAARAAYSACCEKYPAKIIYLCQGGRTLQRSDRDGSEVRAL

Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Metagenome Family F078351

Overview

Multiple Sequence Alignments

Structure & Topology

Predicted Secondary Structure and Topology

Predicted 3D Structure

Low Quality Model:

Gene Neighborhood

Neighboring Pfam domains

Neighboring Clusters of Orthologous Genes (COGs)

Phylogeny

NCBI Taxonomy

Associated Scaffolds

Environmental Properties

Associated Habitat Types

Associated Samples

Family Sequences