NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Metagenome / Metatranscriptome Family F078448

Metagenome / Metatranscriptome Family F078448

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Overview Alignments Structure & Topology Gene Neighborhood Phylogeny Ecosystems Sequences
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Overview

Basic Information
Family ID F078448
Family Type Metagenome / Metatranscriptome
Number of Sequences 116
Average Sequence Length 63 residues
Representative Sequence GCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Number of Associated Samples 106
Number of Associated Scaffolds 116

Quality Assessment
Transcriptomic Evidence Yes
Most common taxonomic group Bacteria
% of genes with valid RBS motifs 0.00 %
% of genes near scaffold ends (potentially truncated) 98.28 %
% of genes from short scaffolds (< 2000 bps) 90.52 %
Associated GOLD sequencing projects 104
AlphaFold2 3D model prediction Yes
3D model pTM-score0.48

Note: High quality evidence is represented by blue. Low quality evidence is represented by red.
Hidden Markov Model
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Most Common Taxonomy
Group Bacteria (98.276 % of family members)
NCBI Taxonomy ID 2
Taxonomy All Organisms → cellular organisms → Bacteria

Most Common Ecosystem
GOLD Ecosystem Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil
(7.759 % of family members)
Environment Ontology (ENVO) Unclassified
(39.655 % of family members)
Earth Microbiome Project Ontology (EMPO) Host-associated → Plant → Plant rhizosphere
(36.207 % of family members)


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Multiple Sequence Alignments

Select alignment to view:      

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Structure & Topology

Predicted Secondary Structure and Topology

Predicted Topology & Secondary Structure
Classification: Globular Signal Peptide: No Secondary Structure distribution: α-helix: 55.56%    β-sheet: 0.00%    Coil/Unstructured: 44.44%
Feature Viewer
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Predicted 3D Structure

Structure Viewer
Per-residue confidence (pLDDT):
  0-50   51-70   71-90   91-100  		pTM-score: 0.48
Powered by PDBe Molstar

Low Quality Model:

This family has a low confidence model (pTM < 0.7) and has not been screened against SCOPe or PDB.

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Gene Neighborhood

Neighboring Pfam domains

Pfam IDName % Frequency in 116 Family Scaffolds
PF00296Bac_luciferase 32.76
PF12681Glyoxalase_2 9.48
PF00903Glyoxalase 8.62
PF09084NMT1 6.90
PF03972MmgE_PrpD 2.59
PF13379NMT1_2 1.72
PF02423OCD_Mu_crystall 1.72
PF01797Y1_Tnp 1.72
PF00561Abhydrolase_1 1.72
PF00581Rhodanese 0.86
PF12695Abhydrolase_5 0.86
PF13714PEP_mutase 0.86
PF00378ECH_1 0.86
PF00528BPD_transp_1 0.86
PF01053Cys_Met_Meta_PP 0.86
PF13751DDE_Tnp_1_6 0.86
PF00866Ring_hydroxyl_B 0.86
PF00202Aminotran_3 0.86
PF12697Abhydrolase_6 0.86
PF13669Glyoxalase_4 0.86
PF13343SBP_bac_6 0.86

Neighboring Clusters of Orthologous Genes (COGs)

COG IDNameFunctional Category % Frequency in 116 Family Scaffolds
COG2141Flavin-dependent oxidoreductase, luciferase family (includes alkanesulfonate monooxygenase SsuD and methylene tetrahydromethanopterin reductase)Coenzyme transport and metabolism [H] 32.76
COG0715ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic componentInorganic ion transport and metabolism [P] 6.90
COG4521ABC-type taurine transport system, periplasmic componentInorganic ion transport and metabolism [P] 6.90
COG20792-methylcitrate dehydratase PrpDCarbohydrate transport and metabolism [G] 2.59
COG1943REP element-mobilizing transposase RayTMobilome: prophages, transposons [X] 1.72
COG2423Ornithine cyclodeaminase/archaeal alanine dehydrogenase, mu-crystallin familyAmino acid transport and metabolism [E] 1.72
COG0075Archaeal aspartate aminotransferase or a related aminotransferase, includes purine catabolism protein PucGAmino acid transport and metabolism [E] 0.86
COG01567-keto-8-aminopelargonate synthetase or related enzymeCoenzyme transport and metabolism [H] 0.86
COG0399dTDP-4-amino-4,6-dideoxygalactose transaminaseCell wall/membrane/envelope biogenesis [M] 0.86
COG0436Aspartate/methionine/tyrosine aminotransferaseAmino acid transport and metabolism [E] 0.86
COG0520Selenocysteine lyase/Cysteine desulfuraseAmino acid transport and metabolism [E] 0.86
COG0626Cystathionine beta-lyase/cystathionine gamma-synthaseAmino acid transport and metabolism [E] 0.86
COG1921Seryl-tRNA(Sec) selenium transferaseTranslation, ribosomal structure and biogenesis [J] 0.86
COG1982Arginine/lysine/ornithine decarboxylaseAmino acid transport and metabolism [E] 0.86
COG2008Threonine aldolaseAmino acid transport and metabolism [E] 0.86
COG2873O-acetylhomoserine/O-acetylserine sulfhydrylase, pyridoxal phosphate-dependentAmino acid transport and metabolism [E] 0.86
COG4100Cystathionine beta-lyase family protein involved in aluminum resistanceInorganic ion transport and metabolism [P] 0.86
COG55173-phenylpropionate/cinnamic acid dioxygenase, small subunitSecondary metabolites biosynthesis, transport and catabolism [Q] 0.86

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Phylogeny

NCBI Taxonomy

Select NCBI taxonomy Level:
NameRankTaxonomyDistribution
All OrganismsrootAll Organisms98.28 %
UnclassifiedrootN/A1.72 %

Visualization
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Associated Scaffolds


ScaffoldTaxonomyLengthIMG/M Link
3300000363|ICChiseqgaiiFebDRAFT_14308915All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1459Open in IMG/M
3300000891|JGI10214J12806_13236609All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria740Open in IMG/M
3300000891|JGI10214J12806_13430996All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4855Open in IMG/M
3300000955|JGI1027J12803_100364730All Organisms → cellular organisms → Bacteria740Open in IMG/M
3300001139|JGI10220J13317_10652413All Organisms → cellular organisms → Bacteria1555Open in IMG/M
3300003996|Ga0055467_10055688All Organisms → cellular organisms → Bacteria1035Open in IMG/M
3300004015|Ga0055462_10137753All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium741Open in IMG/M
3300004047|Ga0055499_10073086All Organisms → cellular organisms → Bacteria593Open in IMG/M
3300004157|Ga0062590_102699411All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium529Open in IMG/M
3300004463|Ga0063356_103100281All Organisms → cellular organisms → Bacteria716Open in IMG/M
3300005093|Ga0062594_100289146All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1236Open in IMG/M
3300005331|Ga0070670_100387555All Organisms → cellular organisms → Bacteria1232Open in IMG/M
3300005343|Ga0070687_100301188All Organisms → cellular organisms → Bacteria1017Open in IMG/M
3300005353|Ga0070669_101134065All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4674Open in IMG/M
3300005356|Ga0070674_101041387All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4720Open in IMG/M
3300005440|Ga0070705_101142856All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4639Open in IMG/M
3300005456|Ga0070678_101207201All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium701Open in IMG/M
3300005457|Ga0070662_101660433All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium552Open in IMG/M
3300005618|Ga0068864_100534773All Organisms → cellular organisms → Bacteria1131Open in IMG/M
3300005836|Ga0074470_11152988All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium4102Open in IMG/M
3300005844|Ga0068862_100821108All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300005844|Ga0068862_102490630All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300005874|Ga0075288_1058558All Organisms → cellular organisms → Bacteria606Open in IMG/M
3300006797|Ga0066659_10838493Not Available764Open in IMG/M
3300006844|Ga0075428_100061545All Organisms → cellular organisms → Bacteria4111Open in IMG/M
3300006844|Ga0075428_101306519All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300006846|Ga0075430_100160842All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1869Open in IMG/M
3300006846|Ga0075430_100207834All Organisms → cellular organisms → Bacteria1624Open in IMG/M
3300006852|Ga0075433_10191716All Organisms → cellular organisms → Bacteria → Proteobacteria1818Open in IMG/M
3300006871|Ga0075434_100788277All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium967Open in IMG/M
3300006876|Ga0079217_10250723All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium945Open in IMG/M
3300006881|Ga0068865_101437190All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium616Open in IMG/M
3300006894|Ga0079215_11652372All Organisms → cellular organisms → Bacteria511Open in IMG/M
3300006904|Ga0075424_101439622All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4732Open in IMG/M
3300006918|Ga0079216_10064406All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1646Open in IMG/M
3300006969|Ga0075419_10123794All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Pseudonocardiales → Pseudonocardiaceae1676Open in IMG/M
3300010047|Ga0126382_11601209All Organisms → cellular organisms → Bacteria604Open in IMG/M
3300010358|Ga0126370_10315743All Organisms → cellular organisms → Bacteria1246Open in IMG/M
3300010359|Ga0126376_11292831All Organisms → cellular organisms → Bacteria749Open in IMG/M
3300010362|Ga0126377_10503045All Organisms → cellular organisms → Bacteria1244Open in IMG/M
3300010362|Ga0126377_10869529All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium963Open in IMG/M
3300011414|Ga0137442_1159982All Organisms → cellular organisms → Bacteria503Open in IMG/M
3300011417|Ga0137326_1163376All Organisms → cellular organisms → Bacteria514Open in IMG/M
3300011419|Ga0137446_1126385All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium615Open in IMG/M
3300011428|Ga0137456_1154441All Organisms → cellular organisms → Bacteria616Open in IMG/M
3300012035|Ga0137445_1076896All Organisms → cellular organisms → Bacteria670Open in IMG/M
3300012129|Ga0137345_1052814All Organisms → cellular organisms → Bacteria526Open in IMG/M
3300012198|Ga0137364_10190792All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1499Open in IMG/M
3300012353|Ga0137367_10015375All Organisms → cellular organisms → Bacteria6065Open in IMG/M
3300012353|Ga0137367_10100880All Organisms → cellular organisms → Bacteria2126Open in IMG/M
3300012360|Ga0137375_10084149All Organisms → cellular organisms → Bacteria3306Open in IMG/M
3300012505|Ga0157339_1052179All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4545Open in IMG/M
3300012519|Ga0157352_1035573All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4682Open in IMG/M
3300012922|Ga0137394_11123211All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium650Open in IMG/M
3300012929|Ga0137404_11908491All Organisms → cellular organisms → Bacteria553Open in IMG/M
3300012987|Ga0164307_11828243All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4515Open in IMG/M
3300014305|Ga0075349_1066831All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4755Open in IMG/M
3300014320|Ga0075342_1001552All Organisms → cellular organisms → Bacteria4397Open in IMG/M
3300014881|Ga0180094_1007083All Organisms → cellular organisms → Bacteria2014Open in IMG/M
3300014968|Ga0157379_11916559All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium584Open in IMG/M
3300015245|Ga0137409_10437183All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1127Open in IMG/M
3300015254|Ga0180089_1114201All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium562Open in IMG/M
3300015372|Ga0132256_102535403All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4614Open in IMG/M
3300016387|Ga0182040_10977152All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4705Open in IMG/M
3300016422|Ga0182039_10668361All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria913Open in IMG/M
3300018031|Ga0184634_10014585All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium2871Open in IMG/M
3300018072|Ga0184635_10009467All Organisms → cellular organisms → Bacteria3352Open in IMG/M
3300018077|Ga0184633_10063367All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1890Open in IMG/M
3300018082|Ga0184639_10263809All Organisms → cellular organisms → Bacteria909Open in IMG/M
3300018082|Ga0184639_10665669All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4503Open in IMG/M
3300018084|Ga0184629_10245370All Organisms → cellular organisms → Bacteria935Open in IMG/M
3300018422|Ga0190265_10536289All Organisms → cellular organisms → Bacteria1285Open in IMG/M
3300018429|Ga0190272_10227123All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1377Open in IMG/M
3300018429|Ga0190272_11007896All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4796Open in IMG/M
3300018465|Ga0190269_11737508All Organisms → cellular organisms → Bacteria529Open in IMG/M
3300019361|Ga0173482_10280603All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium723Open in IMG/M
3300019458|Ga0187892_10280883All Organisms → cellular organisms → Bacteria839Open in IMG/M
3300020064|Ga0180107_1136609All Organisms → cellular organisms → Bacteria892Open in IMG/M
3300021073|Ga0210378_10129926All Organisms → cellular organisms → Bacteria976Open in IMG/M
3300021432|Ga0210384_10148750All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → Hyphomicrobiaceae → Rhodoplanes → unclassified Rhodoplanes → Rhodoplanes sp. Z2-YC68602102Open in IMG/M
3300022209|Ga0224497_10023246All Organisms → cellular organisms → Bacteria2825Open in IMG/M
3300022756|Ga0222622_11089170All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium588Open in IMG/M
3300025001|Ga0209618_1061538All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium585Open in IMG/M
3300025165|Ga0209108_10102992All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1538Open in IMG/M
3300025318|Ga0209519_10344456All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium859Open in IMG/M
3300025918|Ga0207662_10988250All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium597Open in IMG/M
3300025923|Ga0207681_10748584All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium814Open in IMG/M
3300025923|Ga0207681_10857501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4760Open in IMG/M
3300025932|Ga0207690_10128410All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1852Open in IMG/M
3300025960|Ga0207651_11185314All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium685Open in IMG/M
3300026045|Ga0208535_1026839All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium544Open in IMG/M
3300026046|Ga0208780_1013318All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium736Open in IMG/M
3300026071|Ga0208537_1017176Not Available926Open in IMG/M
3300027364|Ga0209967_1011811All Organisms → cellular organisms → Bacteria1229Open in IMG/M
3300027543|Ga0209999_1071820All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium664Open in IMG/M
3300027725|Ga0209178_1165589All Organisms → cellular organisms → Bacteria770Open in IMG/M
3300027765|Ga0209073_10182209All Organisms → cellular organisms → Bacteria791Open in IMG/M
3300027819|Ga0209514_10286448All Organisms → cellular organisms → Bacteria763Open in IMG/M
3300027831|Ga0209797_10203471All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4842Open in IMG/M
3300028578|Ga0272482_10144783All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria701Open in IMG/M
3300030606|Ga0299906_10912654All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium647Open in IMG/M
3300031538|Ga0310888_10303491All Organisms → cellular organisms → Bacteria913Open in IMG/M
3300031547|Ga0310887_10918720All Organisms → cellular organisms → Bacteria555Open in IMG/M
3300031573|Ga0310915_11140419All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4541Open in IMG/M
3300031677|Ga0307480_1012234All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium614Open in IMG/M
3300031716|Ga0310813_10257416All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1456Open in IMG/M
3300031720|Ga0307469_12546852All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium500Open in IMG/M
3300031858|Ga0310892_10088466All Organisms → cellular organisms → Bacteria1663Open in IMG/M
3300031941|Ga0310912_10897658All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4682Open in IMG/M
3300031943|Ga0310885_10352119All Organisms → cellular organisms → Bacteria774Open in IMG/M
3300032075|Ga0310890_10162697All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium1491Open in IMG/M
3300032075|Ga0310890_10656735All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4817Open in IMG/M
3300032144|Ga0315910_11650989All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium500Open in IMG/M
3300033413|Ga0316603_11241501All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi → Chloroflexi incertae sedis → SAR202 cluster → SAR202 cluster bacterium Io17-Chloro-G4706Open in IMG/M
3300033417|Ga0214471_10176469All Organisms → cellular organisms → Bacteria1758Open in IMG/M
3300034148|Ga0364927_0273569All Organisms → cellular organisms → Bacteria510Open in IMG/M


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Environmental Properties

Associated Habitat Types

Select Environment Taxonomy Level:
HabitatTaxonomyDistribution
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil7.76%
SoilEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Soil6.90%
Populus RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Populus Rhizosphere6.90%
Vadose Zone SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Vadose Zone Soil6.03%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment5.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Grasslands → Soil5.17%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural → Soil5.17%
Tropical Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Tropical Forest Soil4.31%
Agricultural SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Agricultural Soil4.31%
Natural And Restored WetlandsEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Natural And Restored Wetlands4.31%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere4.31%
Natural And Restored WetlandsEnvironmental → Aquatic → Marine → Wetlands → Unclassified → Natural And Restored Wetlands2.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Soil2.59%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil2.59%
Switchgrass RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere2.59%
Arabidopsis Thaliana RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Thaliana Rhizosphere2.59%
Groundwater SedimentEnvironmental → Aquatic → Freshwater → Sediment → Unclassified → Groundwater Sediment1.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Agricultural Land → Soil1.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil1.72%
Hardwood Forest SoilEnvironmental → Terrestrial → Soil → Unclassified → Forest Soil → Hardwood Forest Soil1.72%
SoilEnvironmental → Terrestrial → Soil → Unclassified → Uranium Contaminated → Soil1.72%
Switchgrass RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Switchgrass Rhizosphere1.72%
Corn RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere1.72%
Wetland SedimentEnvironmental → Aquatic → Freshwater → Wetlands → Unclassified → Wetland Sediment0.86%
GroundwaterEnvironmental → Aquatic → Freshwater → Groundwater → Contaminated → Groundwater0.86%
SedimentEnvironmental → Aquatic → Marine → Sediment → Unclassified → Sediment0.86%
Sediment (Intertidal)Environmental → Aquatic → Sediment → Unclassified → Unclassified → Sediment (Intertidal)0.86%
Groundwater SedimentEnvironmental → Aquatic → Sediment → Unclassified → Unclassified → Groundwater Sediment0.86%
Unplanted SoilEnvironmental → Terrestrial → Soil → Unclassified → Unclassified → Unplanted Soil0.86%
SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Soil0.86%
Rice Paddy SoilEnvironmental → Terrestrial → Soil → Wetlands → Unclassified → Rice Paddy Soil0.86%
Corn, Switchgrass And Miscanthus RhizosphereEnvironmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere0.86%
Bio-OozeEnvironmental → Terrestrial → Cave → Unclassified → Unclassified → Bio-Ooze0.86%
SedimentEnvironmental → Terrestrial → Floodplain → Sediment → Unclassified → Sediment0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere0.86%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Arabidopsis Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere0.86%
Switchgrass RhizosphereHost-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere0.86%
Miscanthus RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Miscanthus Rhizosphere0.86%
Arabidopsis RhizosphereHost-Associated → Plants → Rhizosphere → Soil → Unclassified → Arabidopsis Rhizosphere0.86%

Visualization
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Associated Samples

Taxon OIDSample NameHabitat TypeIMG/M Link
3300000363Soil microbial communities from Great Prairies - Iowa, Continuous Corn soilEnvironmentalOpen in IMG/M
3300000891Soil microbial communities from Great Prairies - Wisconsin, Continuous corn soilEnvironmentalOpen in IMG/M
3300000955Soil microbial communities from Great Prairies - Iowa, Native Prairie soilEnvironmentalOpen in IMG/M
3300001139Soil microbial communities from Great Prairies - Wisconsin, Switchgrass soilEnvironmentalOpen in IMG/M
3300003996Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_CattailB_D2EnvironmentalOpen in IMG/M
3300004015Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Joice_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300004047Wetland microbial communities from San Francisco Bay, California, USA, that impact long-term carbon sequestration - Sandmound_ThreeSqC_D1EnvironmentalOpen in IMG/M
3300004157Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - - Combined assembly of AARS Block 2EnvironmentalOpen in IMG/M
3300004463Combined assembly of Arabidopsis thaliana microbial communitiesHost-AssociatedOpen in IMG/M
3300005093Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling - Combined assembly of KBS All BlocksEnvironmentalOpen in IMG/M
3300005331Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaGHost-AssociatedOpen in IMG/M
3300005343Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaGEnvironmentalOpen in IMG/M
3300005353Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaGHost-AssociatedOpen in IMG/M
3300005356Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaGHost-AssociatedOpen in IMG/M
3300005440Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaGEnvironmentalOpen in IMG/M
3300005456Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaGHost-AssociatedOpen in IMG/M
3300005457Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaGHost-AssociatedOpen in IMG/M
3300005618Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2Host-AssociatedOpen in IMG/M
3300005836Microbial communities from Youngs Bay mouth sediment, Columbia River estuary, Oregon - S.42_YBBEnvironmentalOpen in IMG/M
3300005844Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2Host-AssociatedOpen in IMG/M
3300005874Rice paddy soil microbial communities from Twitchell Island, California, USA - SF_Rice_20C_0N_404EnvironmentalOpen in IMG/M
3300006797Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_108EnvironmentalOpen in IMG/M
3300006844Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2Host-AssociatedOpen in IMG/M
3300006846Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4Host-AssociatedOpen in IMG/M
3300006852Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2Host-AssociatedOpen in IMG/M
3300006871Populus root and rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3Host-AssociatedOpen in IMG/M
3300006876Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS200EnvironmentalOpen in IMG/M
3300006881Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2Host-AssociatedOpen in IMG/M
3300006894Agricultural soil microbial communities from Utah to study Nitrogen management - NC ControlEnvironmentalOpen in IMG/M
3300006904Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. TD hybrid SBSTD3Host-AssociatedOpen in IMG/M
3300006918Agricultural soil microbial communities from Utah to study Nitrogen management - NC AS100EnvironmentalOpen in IMG/M
3300006969Populus root and rhizosphere microbial communities from Tennessee, USA - Soil MetaG P. deltoides SBSDD3Host-AssociatedOpen in IMG/M
3300010047Tropical forest soil microbial communities from Panama - MetaG Plot_30EnvironmentalOpen in IMG/M
3300010358Tropical forest soil microbial communities from Panama - MetaG Plot_3EnvironmentalOpen in IMG/M
3300010359Tropical forest soil microbial communities from Panama - MetaG Plot_15EnvironmentalOpen in IMG/M
3300010362Tropical forest soil microbial communities from Panama - MetaG Plot_22EnvironmentalOpen in IMG/M
3300011414Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT266_2EnvironmentalOpen in IMG/M
3300011417Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMZT500_2EnvironmentalOpen in IMG/M
3300011419Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT357_2EnvironmentalOpen in IMG/M
3300011428Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT615_2EnvironmentalOpen in IMG/M
3300012035Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMGT338_2EnvironmentalOpen in IMG/M
3300012129Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River MetaG ERMLT530_2EnvironmentalOpen in IMG/M
3300012198Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_20_16 metaGEnvironmentalOpen in IMG/M
3300012353Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_L_80_16 metaGEnvironmentalOpen in IMG/M
3300012360Vadose zone soil microbial communities from Sagehorn Ranch, Mendocino, California, USA - Sage1_R_113_16 metaGEnvironmentalOpen in IMG/M
3300012505Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.10.yng.090610Host-AssociatedOpen in IMG/M
3300012519Unplanted soil (control) microbial communities from North Carolina - M.Soil.7.yng.070610EnvironmentalOpen in IMG/M
3300012922Vadose zone soil microbial communities from Angelo Coast Range Reserve, California, USA - czobulk1.16 metaGEnvironmentalOpen in IMG/M
3300012929Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZOMad2_1_16fungal (Illumina Assembly)EnvironmentalOpen in IMG/M
3300012987Soil microbial communities amended with fresh organic matter from upstate New York, USA - Whitman soil sample_243_MGEnvironmentalOpen in IMG/M
3300014305Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushSE_TuleB_D1EnvironmentalOpen in IMG/M
3300014320Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - RushOxbow_ThreeSqA_D1EnvironmentalOpen in IMG/M
3300014881Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLIBT47_16_1DaEnvironmentalOpen in IMG/M
3300014968Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaGHost-AssociatedOpen in IMG/M
3300015245Vadose zone soil fungal communities from Angelo Coast Range Reserve, California, USA - CZODoug1_16fungal (Hybrid Assembly)EnvironmentalOpen in IMG/M
3300015254Soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaG ERMLT860_16_10DEnvironmentalOpen in IMG/M
3300015372Soil combined assemblyHost-AssociatedOpen in IMG/M
3300016387Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - flux8day.12C.oxic.44.000.176EnvironmentalOpen in IMG/M
3300016422Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - statanox.12C.anox.44.000.111EnvironmentalOpen in IMG/M
3300018031Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_200_b1EnvironmentalOpen in IMG/M
3300018072Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3_30_b2EnvironmentalOpen in IMG/M
3300018077Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b1EnvironmentalOpen in IMG/M
3300018082Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM3-1_170_b2EnvironmentalOpen in IMG/M
3300018084Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM4_32_b1EnvironmentalOpen in IMG/M
3300018422Populus adjacent soil microbial communities from riparian zone of Indian Creek, Utah, USA - 124 TEnvironmentalOpen in IMG/M
3300018429Populus adjacent soil microbial communities from riparian zone of Shoshone River, Wyoming, USA - 504 TEnvironmentalOpen in IMG/M
3300018465Populus adjacent soil microbial communities from riparian zone of Blue River, Arizona, USA - 249 ISEnvironmentalOpen in IMG/M
3300019361Soil microbial communities from Arlington Agricultural Research Station in Wisconsin, USA - Nitrogen cycling UWRJ-S133-311R-2 (version 2)EnvironmentalOpen in IMG/M
3300019458Bio-ooze microbial communities from a basaltic lava cave in the Kipuka Kanohina Cave System on the Island of Hawaii, USA - MA170107-3 metaGEnvironmentalOpen in IMG/M
3300020064Metatranscriptome of soil microbial communities from meander-bound floodplain in the East River, Colorado, USA - East River metaT ERMLIBT27_16_1Ra (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300021073Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM1_60_b1 redoEnvironmentalOpen in IMG/M
3300021432Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-2-MEnvironmentalOpen in IMG/M
3300022209Sediment microbial communities from San Francisco Bay, California, United States - SF_Jul11_sed_USGS_13EnvironmentalOpen in IMG/M
3300022756Groundwater sediment microbial communities from an aquifer in East River, Colorado, USA - PLM2_5_b1EnvironmentalOpen in IMG/M
3300025001Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 3 (SPAdes)EnvironmentalOpen in IMG/M
3300025165Soil microbial communities from Rifle, Colorado, USA - sediment 10ft 1EnvironmentalOpen in IMG/M
3300025318Soil microbial communities from Rifle, Colorado, USA - sediment 13ft 1EnvironmentalOpen in IMG/M
3300025918Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes)EnvironmentalOpen in IMG/M
3300025923Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025932Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300025960Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes)Host-AssociatedOpen in IMG/M
3300026045Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNE_CattailC_D2 (SPAdes)EnvironmentalOpen in IMG/M
3300026046Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberryNW_TuleC_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300026071Natural and restored wetland microbial communities from the San Francisco Bay, California, USA, that impact long-term carbon sequestration - MayberrySE_TuleA_D1 (SPAdes)EnvironmentalOpen in IMG/M
3300027364Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027543Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 AM (SPAdes)Host-AssociatedOpen in IMG/M
3300027725Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS200 (SPAdes)EnvironmentalOpen in IMG/M
3300027765Agricultural soil microbial communities from Georgia to study Nitrogen management - GA AS100 (SPAdes)EnvironmentalOpen in IMG/M
3300027819Subsurface groundwater microbial communities from S. Glens Falls, New York, USA - GMW37 contaminated, 5.8 m (SPAdes)EnvironmentalOpen in IMG/M
3300027831Wetland sediment microbial communities from St. Louis River estuary, USA, under dissolved organic matter induced mercury methylation - T0Bare3Fresh (SPAdes)EnvironmentalOpen in IMG/M
3300028578Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT160D0EnvironmentalOpen in IMG/M
3300030606Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT145D125EnvironmentalOpen in IMG/M
3300031538Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D1EnvironmentalOpen in IMG/M
3300031547Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D4EnvironmentalOpen in IMG/M
3300031573Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.AN111EnvironmentalOpen in IMG/M
3300031677Metatranscriptome of hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM5C_05 (Metagenome Metatranscriptome)EnvironmentalOpen in IMG/M
3300031716Soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - YN3EnvironmentalOpen in IMG/M
3300031720Hardwood forest soil microbial communities from Morgan-Monroe State Forest, Indiana, United States - atmos_gasesAM2C_515EnvironmentalOpen in IMG/M
3300031858Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - C8D2EnvironmentalOpen in IMG/M
3300031941Lab enrichment of tropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.bulkMG.OX080EnvironmentalOpen in IMG/M
3300031943Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T60D2EnvironmentalOpen in IMG/M
3300032075Lab incubated soil microbial communities from West Virginia University Organic Research Farm, Morgantown, WV, United States - T20D3EnvironmentalOpen in IMG/M
3300032144Garden soil microbial communities collected in Santa Monica, California, United States - Edamame soilEnvironmentalOpen in IMG/M
3300033413Wetland soil microbial communities from Old Woman Creek delta, Ohio, United States - OWC_soil_day10_noCTEnvironmentalOpen in IMG/M
3300033417Soil microbial communities from uranium-contaminated site in the Upper Colorado River Basin, Wyoming, United States - RVT142D155EnvironmentalOpen in IMG/M
3300034148Sediment microbial communities from East River floodplain, Colorado, United States - 18_j17EnvironmentalOpen in IMG/M

Geographical Distribution
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Family Sequences

Protein ID Sample Taxon ID Habitat Sequence
ICChiseqgaiiFebDRAFT_1430891533300000363SoilELGGRVGCIPTVLQVAALHGMRQCLEELKRSGTEARYFKETAGIEDTRKWYTGLGNKELKEVEAKYGY*
JGI10214J12806_1323660923300000891SoilLQVAALHGMRQCLEELKRSGTEARYFKETPGIDETRKWYTNLGNQELKELEAKYSY*
JGI10214J12806_1343099613300000891SoilWGELGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANMGNDDLKALERKYGY*
JGI1027J12803_10036473013300000955SoilGRVGCIPTVLQVAALHGMRQCLEELKRSGTETRYFKETPGIDETRKWYSELGNKELKELEAKYRY*
JGI10220J13317_1065241333300001139SoilELGGRVGCIPTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0055467_1005568833300003996Natural And Restored WetlandsAALHGMRQCLEELQKNGTEAGYFKQTPGIEDTRKWYANQGNEELKALEKKYGLS*
Ga0055462_1013775313300004015Natural And Restored WetlandsLQVAMLHGMRQCLEELVKNGTEAAYFKNTPGIDETRKWYSNMGNVELKELEKKYGY*
Ga0055499_1007308623300004047Natural And Restored WetlandsIPTVLQVAMLHGMRQCLEELKKSGTEAGYFKNTPGIDDTRKWYANMGNAELKELEKKYGY
Ga0062590_10269941123300004157SoilLHGMRQCLEELKRSGTEARYFKETAGIEDTRKWYTGLGNKELKEVEAKYGY*
Ga0063356_10310028123300004463Arabidopsis Thaliana RhizosphereIQRWGELGGRVGCIPTVLQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0062594_10028914613300005093SoilLSRWGELGGRVGCIPTVLQVAALHGMRQCLEELKKNGTEATYLKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0070670_10038755523300005331Switchgrass RhizosphereQRYGELGGRVGCIPTVLQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIDDTRKWYANMGNAELKELEKKYGY*
Ga0070687_10030118813300005343Switchgrass RhizosphereLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0070669_10113406513300005353Switchgrass RhizosphereELGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0070674_10104138723300005356Miscanthus RhizosphereQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANMGNEDLKALEKKYGY*
Ga0070705_10114285613300005440Corn, Switchgrass And Miscanthus RhizosphereWGELGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0070678_10120720113300005456Miscanthus RhizospherePTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0070662_10166043313300005457Corn RhizosphereRVGCIPTVLQVAALHGMRQCLEELKKNGTEAAYFKQTAGIEDTRKWYANLGNAELKELEKKYGY*
Ga0068864_10053477333300005618Switchgrass RhizosphereGELGGRVGCIPTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0074470_1115298813300005836Sediment (Intertidal)GGRVGCIPTVLQVAMLHGMRQCLEELKKNGTEAAYFKNTPGIEDTRKWYANMGNAELKELEKKYGY*
Ga0068862_10082110833300005844Switchgrass RhizosphereALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAERKELEKKYGY*
Ga0068862_10249063023300005844Switchgrass RhizosphereTVLQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIDDTRKWYANMGNAELKELEKKYGY*
Ga0075288_105855813300005874Rice Paddy SoilQVAALHGMRQCLEELKRSGTEARYFKDTAGIEDTRKWYTGLGNKELKELEAKYGY*
Ga0066659_1083849313300006797SoilTVLQVAALHGMRQILEELKKTGTDTRYLKETPGIDETRKWYSELGNKELKELEAKYRV*
Ga0075428_10006154513300006844Populus RhizosphereGCIPTVLQVAALHGMRQCLEELKKSGTEARYFKETPGIEDTRKWYAGLGNKELKELEAKYGY*
Ga0075428_10130651923300006844Populus RhizosphereQRWGELGGRVGCIPTVLQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIDDTRKWYANLGNAELKELEKKYGY*
Ga0075430_10016084213300006846Populus RhizosphereTILQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNEELKELEKKYGY*
Ga0075430_10020783413300006846Populus RhizosphereLGGRVGCIPTVLQVAALHGMRQCLEELKKNGTEARYFKETPGIDETRQWYSNLGNKELKEIEAKYRA*
Ga0075433_1019171613300006852Populus RhizosphereIPTVLQVAALHGMRQCLEELKRSGTETRYFKETPGIDETRKWYSELGNKELKELEAKYSY
Ga0075434_10078827723300006871Populus RhizosphereLHGMRQCLEELRKSGTEAAYFKQTAGIEATRKWYANLGNAELKELEKKYGY*
Ga0079217_1025072323300006876Agricultural SoilELGVRVGCIPTVLQVAALHGMRQCLEELKRSGTESRYFKETPGIEETRKWYTNLGNKELKELEAKYGY*
Ga0068865_10143719013300006881Miscanthus RhizosphereWGELGGRVGCIPTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKRYGY*
Ga0079215_1165237213300006894Agricultural SoilRWGELGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANMGNAELKEMEKKYGY*
Ga0075424_10143962213300006904Populus RhizosphereRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNEELKALEKKYGY*
Ga0079216_1006440623300006918Agricultural SoilGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANMGNAELKEMEKKYGY*
Ga0075419_1012379423300006969Populus RhizosphereVLQVAALHGMRQCLEELKKNGTETRYFKETPGIDETRQWYSNLGNKELKEIEAKYRA*
Ga0126382_1160120923300010047Tropical Forest SoilVLPNILQIAALHAMRQVLEELRRSGTEARYFKETPGIDETRKWYSDLGNRELKELETKYRA*
Ga0126370_1031574313300010358Tropical Forest SoilVAALHGMRQCLEELKRSGTETRYFKETPGIDETRKWYSELGNKELKELETKYRY*
Ga0126376_1129283123300010359Tropical Forest SoilLDEYGEHGVHVGVLPNILQIAALHAMRQVLEELRQSGTEARYFKETPGIDETRKWYSELGNKELKELEAKYRG*
Ga0126377_1050304523300010362Tropical Forest SoilVGCIPTVLQVAALHGMRQCLEELRKSGTEARYFKETPGIEETRQWYSNLGNKELKEIEAKYRA*
Ga0126377_1086952913300010362Tropical Forest SoilDRYGELGDRVGCIPTVLQVAALHGMRQCLEELKKSGTEARYFKETPGIDETRQWYSNLGNKELKEIEAKYRA*
Ga0137442_115998223300011414SoilPTVLQVAMLHGMRQCLEELKKNGTEAAYFKNTPGIEDTRKWYANMGNAELKEMEKKYGY*
Ga0137326_116337623300011417SoilLHGMRQCLEELKKNGTEAAYFKNTPGIEDTRKWYANMGNAELKEMEKKYGY*
Ga0137446_112638513300011419SoilLGGRVGCIPTVLKVAMLHGMRQCLEELKKSGTEAAYFKNTPGIEDTRKWYAGLGNAELKELEKKYGY*
Ga0137456_115444123300011428SoilGCIPTVLQVAMLHGMRQCLEELKKNGTEAAYFKNTPGIEDTRKWYANMGNAELKEMEKKYGY*
Ga0137445_107689623300012035SoilMLHGMRQCLEELRKSGTEAAYFKNTPGIEETRKWYASLGNAELKDLEKKYG*
Ga0137345_105281423300012129SoilLQVAMLHGMRQCLEELKKNGTEAAYFKNTPGIEDTRKWYANMGNAELKEMEKKYGY*
Ga0137364_1019079213300012198Vadose Zone SoilRVGCIPTVLQVAALHGMRQCLEELKKNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0137367_1001537563300012353Vadose Zone SoilVLQVAALHGMRQCLEELKKSGTEARYFKETPGIEDTRKWYAGLGNKELKELEAKYGY*
Ga0137367_1010088033300012353Vadose Zone SoilVLQVAALHGMRQCLEELKKSGTEARYFKETPGIEDTRKWYAGLGNEELKELEAKYGY*
Ga0137375_1008414943300012360Vadose Zone SoilALHGMRQCLEELKKSGTEARYFKETPGIEDTRKWYAGLGNEELKELEAKYGY*
Ga0157339_105217913300012505Arabidopsis RhizosphereGCIPTVLQVAALHGMRQCLEELKTNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0157352_103557313300012519Unplanted SoilGGRVGCIPTVLQVAALHGMRQCLEELKKNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0137394_1112321113300012922Vadose Zone SoilLQVAALHGMRQCLEELKKNGTETRYFKETPGIDETRKWYSELGNKELKEIEAKYGA*
Ga0137404_1190849123300012929Vadose Zone SoilGRVGCIPTVLQVAALHGMRQCLEELKKSGTETRYLKETPGIEETRQWYSNLGNKELKEIEAKYR*
Ga0164307_1182824323300012987SoilCIPTVLQVAALHGMRQCLEELKKNGTEATYLKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0075349_106683113300014305Natural And Restored WetlandsQRWGELGGRVGCIPTVLQVAMLHGMRQCLEELKKNGTEAGYFKNTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0075342_100155263300014320Natural And Restored WetlandsVLQVAMLHGMRQCLEELKKNGTEAGYFKNTPGIEDTRKWYANLGNAELKELEKRYGY*
Ga0180094_100708333300014881SoilGCIPTILQVAALHGMRQCLEELKKNGTEAGYFKATPGIEDTRKWYANLGNEQLKALEKKYGY*
Ga0157379_1191655913300014968Switchgrass RhizosphereAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0137409_1043718313300015245Vadose Zone SoilELGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEARYFKETPGIDETRKWYSDLGNKELKEIEAKYRA*
Ga0180089_111420123300015254SoilGELGGRVGCIPTVLQVAALHGMRQCLEELKRSGTEARYFKETPGIEETRKWYADLGNKELKELEAKYRY*
Ga0132256_10253540313300015372Arabidopsis RhizosphereGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY*
Ga0182040_1097715223300016387SoilCIPTVLQVAALHGMRQCLEELRRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKNYG
Ga0182039_1066836123300016422SoilLQVAALHGMRQILEELKKTGTDTRYLKETPGIDETRKWYSELGNKELKELEAKYRF
Ga0184634_1001458513300018031Groundwater SedimentVAALHGMRQCLEELKTNGTEARYFKDTPGIEDTRKWYSNLGNKELKELEAKYGY
Ga0184635_1000946753300018072Groundwater SedimentTILQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNEELKALEKKYGY
Ga0184633_1006336733300018077Groundwater SedimentWGELGGRVGCIPTVLQVAALHGMRQCLEELKMNGTEARYFKETPGIEDTRKWYANLGNAELKELEKKYAY
Ga0184639_1026380913300018082Groundwater SedimentELGGRVGCIPTVLQVAALHGMRQCLEELKMNGTEARYFKETPGIEDTRKWYSNLGNKELKELEAKYGY
Ga0184639_1066566923300018082Groundwater SedimentELGGRVGCIPTVLQVAALHGMRQCLEELKMNGTEARYFKETPGIEDTRKWYANLGNAELKELEKKYAY
Ga0184629_1024537013300018084Groundwater SedimentIPTVLQVAALHGMRQCLEELQKNGTEAGYFKATPGIEDTRKWYANLGNEQLKALEKEYGY
Ga0190265_1053628913300018422SoilCIPTVLQVAALHGMRQCLEELKNNGTEAGYFKATPGIEDTRKWYANLGNEQLKALEKQYG
Ga0190272_1022712313300018429SoilGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANMGNAELKELEKKYGY
Ga0190272_1100789623300018429SoilGELGGRVGCIPTVLQVAALHGMRQCLEELKKNGTEAAYFKNTAGIEDTRKWYANMGNTELKDLEKKYGY
Ga0190269_1173750823300018465SoilVLQVAMLHGMRQCLEELKKNGTEAGYFKNTPGIDETRKWYANMGNAELKELEKKYGY
Ga0173482_1028060313300019361SoilRVGCIPTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0187892_1028088313300019458Bio-OozeQVAALHGMRQCLEELKQSGTETRYFKETPGIEETRKWYANLGNKELKELEARYGY
Ga0180107_113660923300020064Groundwater SedimentVLQVAALHGMRQCLEELRRSGTEARYMKETPGIEDTRQWYGNLGNKELKELEKKYQV
Ga0210378_1012992613300021073Groundwater SedimentMPLQRWGELGGRVGCIPTVLQVAALHGMRQCLEELKTNGTEARYFKETPGIEDTRKWYAGMGNKELKELEAKYGY
Ga0210384_1014875013300021432SoilRVGCIPTVLQVAALHGMRQCLEELKRSGTETRYFKETPGIDETRKWYSELGNKELKELEAKYRY
Ga0224497_1002324613300022209SedimentELGGRVGCIPTVLQVAALHGMRQILEELRDTGTDQRYLKETPGIEETRKWYSEMGNKELKELEAKYGY
Ga0222622_1108917023300022756Groundwater SedimentGGRVGCIPTVLQVAALHGMRQCLEELKKNGTEARYFKETPGIDETRKWYSELGNKELKEIEAKYRE
Ga0209618_106153813300025001SoilGRVGCIPTVLQVAALHGMRQCLEELKKNGTEAGHFKNTPGIEDTRKWYTSLGNEELKAFERKYGY
Ga0209108_1010299213300025165SoilMTVQRYGELGGRVGCIPTVLQVAMLHGMRQCLEELRKSGTEAAYFKNTPGIEETRKWYASLGNAELKDLEKK
Ga0209519_1034445613300025318SoilTVLQVAALHGMRQCLEELKKNGTEAGHFKNTPGIEDTRKWYTSLGNEELKAFERKYGY
Ga0207662_1098825023300025918Switchgrass RhizospherePTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0207681_1074858433300025923Switchgrass RhizosphereVGCIPTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0207681_1085750113300025923Switchgrass RhizosphereSRWGELGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0207690_1012841033300025932Corn RhizosphereGRVGCIPTVLQVAALHGMRQCLEELKKNGTEATYLKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0207651_1118531423300025960Switchgrass RhizosphereGRVGCIPTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0208535_102683913300026045Natural And Restored WetlandsVAALHGMRQCLEELKNNGTEASYFKNTPGIEDTRKWYTGLGNAELKELEKKYGY
Ga0208780_101331813300026046Natural And Restored WetlandsCIPTVLQVAALHGMRQCLEELKNNGTETGYFKNTPGIEDTRKWYTGLGNAELKELEKKYG
Ga0208537_101717613300026071Natural And Restored WetlandsRVGCIPTVLQVAALHGMRQCLEELKNNGTEASYFKNTPGIEDTRKWYTGLGNAELKELEKKYGY
Ga0209967_101181133300027364Arabidopsis Thaliana RhizosphereAALHGMRQCLEELKRSGTEARYFKETAGIEDTRKWYTGLGNKELKEVEAKYGY
Ga0209999_107182013300027543Arabidopsis Thaliana RhizosphereGRVGCIPTVLQVAALHGMRQCLEELKRSGTEARYFKETAGIEDTRKWYTGLGNKELKEVEAKYGY
Ga0209178_116558913300027725Agricultural SoilVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0209073_1018220913300027765Agricultural SoilTVLQVAALHGMRQCLEELKRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0209514_1028644823300027819GroundwaterVGCIPTVLQVAALHGMRQCLEELKRSGTEARYFKETAGIEETRKWYAELGNKELKELEAKYRY
Ga0209797_1020347123300027831Wetland SedimentIQRYGELGGRVGCIPTVLQVAMLHGMRQCLEELVKNGTEAGYFKNTPGIDDTRKWYANMGNAELKELEKNYGY
Ga0272482_1014478323300028578SoilIDRYGELGGRVGCIPTVLQVAALHGMRQCLEELKRSGTEARYFKETPGIEETRKWYTNLGNQELKELEAKYGY
Ga0299906_1091265423300030606SoilELGGRVGCIPTVLQVAALHGMRQCLEELKRSGTEAGYFKNTPGIEDTRQWYAGLGNKELKELEAKYGY
Ga0310888_1030349113300031538SoilELGGRVGCIPTVLQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIDDTRKWYANMGNAELKELEKKYGY
Ga0310887_1091872013300031547SoilPTVLQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIDDTRKWYANMGNAELKELEKKYGY
Ga0310915_1114041923300031573SoilVAALHGMRQCLEELRRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKNYGY
Ga0307480_101223413300031677Hardwood Forest SoilRGRVGCIPTVLQVAALHGMRQCLEELKKSGTEARYFKETPGIDETRKWYSDLGNKELKEIEAKYRA
Ga0310813_1025741613300031716SoilGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0307469_1254685213300031720Hardwood Forest SoilGCIPTVLQVAALHGMRQCLEELKRNGTETGYFKATPGIDETRKWYAELGNKELKELEAKYSG
Ga0310892_1008846613300031858SoilQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIDDTRKWYANMGNAELKELEKKYGY
Ga0310912_1089765823300031941SoilTVLQVAALHGMRQCLEELRRNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKNYGY
Ga0310885_1035211913300031943SoilIQRYGELGGRVGCIPTVLQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIDDTRKWYANMGNAELKELEKKYGY
Ga0310890_1016269713300032075SoilLSRWGELGGRVGCIPTVLQVAALHGMRQCLEELKKSGTEAAYFKQTPGIEDTRKWYANLGNEELKELEKKYGY
Ga0310890_1065673513300032075SoilQVAALHGMRQCLEELKTNGTEAAYFKQTPGIEDTRKWYANLGNAELKELEKKYGY
Ga0315910_1165098923300032144SoilCIPTVLQVAALHGMRQCLEELKRSGTEARYFKDTPGIEDTRKWYAGMGNKELKELETKYG
Ga0316603_1124150123300033413SoilIPTVLQVAMLHAMRQCLEELKKNGTEAGYFKNTPGIDDTRKWYANMGNAELKELEKKYGY
Ga0214471_1017646913300033417SoilRVGCIPTVLQVAALHGMRQILEELRNSGTDQRYLKETPGIEDTRKWYANLGNEELKELEAKYGY
Ga0364927_0273569_313_5103300034148SedimentGRVGCIPTVLQVAMLHGMRQCLEELKKSGTEAAYFKNTPGIDDTRKWYANLGNAELKELEKKYGY

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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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